80 results on '"Susan Rea"'
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2. Establishing Trustworthy Rational Friendships in Social Internet of Things
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Raza Ul Mustafa, Alan McGibney, and Susan Rea
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- 2023
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3. Trusted and secure composite digital twin architecture for collaborative ecosystems
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Pasindu Manisha Kuruppuarachchi, Susan Rea, and Alan McGibney
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Artificial Intelligence ,Hardware and Architecture ,Industrial and Manufacturing Engineering ,Computer Science Applications - Published
- 2022
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4. Blood Eosinophil Count and Hospital Readmission in Patients with Acute Exacerbation of Chronic Obstructive Pulmonary Disease
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Benjamin D. Horne, Frank Trudo, Denitza P. Blagev, Yen Chung, Matthew J. Hegewald, Susan Rea, and James Kreindler
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COPD ,medicine.medical_specialty ,Acute exacerbation of chronic obstructive pulmonary disease ,Exacerbation ,business.industry ,Area under the curve ,General Medicine ,Odds ratio ,Eosinophil ,medicine.disease ,Confidence interval ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,030228 respiratory system ,Internal medicine ,medicine ,030212 general & internal medicine ,business ,Cohort study - Abstract
Purpose This retrospective, observational cohort study investigated the association of blood eosinophil counts within 1 week of hospitalization for acute exacerbation of COPD (AECOPD) with subsequent risk of all-cause and COPD-related readmission from a large integrated health system. Patients and Methods Electronic medical records were extracted for index hospitalization for AECOPD at all Intermountain Healthcare hospitals. The primary outcome was the relationship of blood eosinophil count to 30-day all-cause readmission; secondary outcomes were 60-day, 90-day, and 12-month all-cause readmission, COPD-related readmission, and empiric derivation of the eosinophil count with the highest area under the curve (AUC) for predicting 30-day all-cause readmission. Results Of 2445 included patients, 1935 (79%) had a blood eosinophil count
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- 2020
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5. The Summit Score Stratifies Mortality and Morbidity in Chronic Obstructive Pulmonary Disease
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Benjamin D. Horne, Courtney Crim, Denitza P. Blagev, Susan Rea, Matthew J. Hegewald, and Tami L Bair
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medicine.medical_specialty ,COPD ,Framingham Risk Score ,business.industry ,Proportional hazards model ,General Medicine ,medicine.disease ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Blood pressure ,030228 respiratory system ,chemistry ,Randomized controlled trial ,law ,Internal medicine ,Heart failure ,medicine ,030212 general & internal medicine ,Vilanterol ,business ,Body mass index - Abstract
Introduction Tobacco use and other cardiovascular risk factors often accompany chronic obstructive pulmonary disease (COPD). This study derived and validated the Summit Score to predict mortality in people with COPD and cardiovascular risks. Methods SUMMIT trial subjects (N=16,485) ages 40-80 years with COPD were randomly assigned 50%/50% to derivation (N=8181) and internal validation (N=8304). Three external COPD validations from Intermountain Healthcare included outpatients with cardiovascular risks (N=9251), outpatients without cardiovascular risks (N=8551), and inpatients (N=26,170). Cox regression evaluated 40 predictors of all-cause mortality. SUMMIT treatments including combined fluticasone furoate (FF) 100μg/vilanterol 25μg (VI) were not included in the score. Results Mortality predictors were FEV1, heart rate, systolic blood pressure, body mass index, age, smoking pack-years, prior COPD hospitalizations, myocardial infarction, heart failure, diabetes, anti-thrombotics, anti-arrhythmics, and xanthines. Combined in the Summit Score (derivation: c=0.668), quartile 4 vs 1 had HR=4.43 in SUMMIT validation (p 19. Conclusion In this post hoc analysis of SUMMIT trial data, the Summit Score was derived and validated in multiple Intermountain COPD populations. The score was used to identify a subpopulation in which mortality risk was lower for FF 100μg/VI 25μg treatment. Trial registration The SUMMIT trial is registered at ClinicalTrials.gov as number NCT01313676.
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- 2020
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6. An Architecture for Composite Digital Twin Enabling Collaborative Digital Ecosystems
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Pasindu Kuruppuarachchi, Susan Rea, and Alan McGibney
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- 2022
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7. Association of the Intermountain Risk Score with major adverse health events in patients positive for COVID-19: an observational evaluation of a US cohort
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Benjamin D Horne, Joseph R Bledsoe, Joseph B Muhlestein, Heidi T May, Ithan D Peltan, Brandon J Webb, John F Carlquist, Sterling T Bennett, Susan Rea, Tami L Bair, Colin K Grissom, Stacey Knight, Brianna S Ronnow, Viet T Le, Edward Stenehjem, Scott C Woller, Kirk U Knowlton, and Jeffrey L Anderson
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Adult ,Male ,Adolescent ,SARS-CoV-2 ,COVID-19 ,General Medicine ,Middle Aged ,Risk Assessment ,Cohort Studies ,COVID-19 Testing ,Predictive Value of Tests ,Risk Factors ,Humans ,Female ,Prospective Studies - Abstract
ObjectivesThe Intermountain Risk Score (IMRS), composed using published sex-specific weightings of parameters in the complete blood count (CBC) and basic metabolic profile (BMP), is a validated predictor of mortality. We hypothesised that IMRS calculated from prepandemic CBC and BMP predicts COVID-19 outcomes and that IMRS using laboratory results tested at COVID-19 diagnosis is also predictive.DesignProspective observational cohort study.SettingPrimary, secondary, urgent and emergent care, and drive-through testing locations across Utah and in sections of adjacent US states. Viral RNA testing for SARS-CoV-2 was conducted from 3 March to 2 November 2020.ParticipantsPatients aged ≥18 years were evaluated if they had CBC and BMP measured in 2019 and tested positive for COVID-19 in 2020.Primary and secondary outcome measuresThe primary outcome was a composite of hospitalisation or mortality, with secondary outcomes being hospitalisation and mortality separately.ResultsAmong 3883 patients, 8.2% were hospitalised and 1.6% died. Subjects with low, mild, moderate and high-risk IMRS had the composite endpoint in 3.5% (52/1502), 8.6% (108/1256), 15.5% (152/979) and 28.1% (41/146) of patients, respectively. Compared with low-risk, subjects in mild-risk, moderate-risk and high-risk groups had HR=2.33 (95% CI 1.67 to 3.24), HR=4.01 (95% CI 2.93 to 5.50) and HR=8.34 (95% CI 5.54 to 12.57), respectively. Subjects aged ConclusionsIMRS, a simple risk score using very basic laboratory results, predicted COVID-19 hospitalisation and mortality. This included important abilities to identify risk in younger adults with few diagnosed comorbidities and to predict risk prior to SARS-CoV-2 infection.
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- 2022
8. Trust and Security Analyzer for Collaborative Digital Manufacturing Ecosystems
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Pasindu Kuruppuarachchi, Susan Rea, and Alan McGibney
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- 2022
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9. A Distributed Ledger Based Platform for Automated Energy Performance Assessment
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Tharindu Ranathunga, Ramona Marfievici, Alan McGibney, and Susan Rea
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- 2021
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10. Optimization of Polar code designs for industrial wireless communications
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Susan Rea, Yasantha Samarawickrama, Alan McGibney, and Victor Cionca
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Flexibility (engineering) ,business.industry ,Network packet ,Computer science ,Polar code ,020208 electrical & electronic engineering ,020206 networking & telecommunications ,02 engineering and technology ,Modular design ,Automation ,Packet loss ,Scalability ,0202 electrical engineering, electronic engineering, information engineering ,Wireless ,business ,Computer network - Abstract
The demand for personalised products from consumers is a growing trend and as such requires a paradigm shift from mass-production to mass-customization. The realisation of Industry 4.0 provides opportunities for the industrial sector to create modular and flexible production lines that can be rapidly adapted to cater for on-demand manufacturing needs. This modular approach demands a flexible communications infrastructure that can provide reliable connectivity across these manufacturing cells. The use of static wired networks limits adaptability and as such wireless communications are receiving far more attention. Wireless offers the advantages of low cost, seamless deployment, higher flexibility and scalability. However, before wireless communications can be leveraged they need to meet the tight constraints of industrial automation. As per Ultra Reliable Low Latency Communication (URLLC) for industrial communications, sub-millisecond-latency and 1 packet loss in 100K packets is essential. Industrial channel specific optimized approach using Polar codes is proposed as a solution.
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- 2021
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11. A Prognostic Tool for COVID-19 Decision Support: The Intermountain Risk Score Predicts Major Adverse Health Events in Patients Positive for COVID-19
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Viet T Le, John F. Carlquist, Jeffrey L. Anderson, Scott C. Woller, Sterling T. Bennett, Ithan D. Peltan, Stacey Knight, Kirk U. Knowlton, Joseph B. Muhlestein, Heidi T May, Edward Stenehjem, Susan Rea, Benjamin D. Horne, Tami L Bair, Joseph Bledsoe, Brandon J. Webb, Brianna S. Ronnow, and Colin K. Grissom
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medicine.medical_specialty ,Framingham Risk Score ,medicine.diagnostic_test ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Complete blood count ,Institutional review board ,Health care ,Emergency medicine ,medicine ,In patient ,Outcomes research ,business - Abstract
Background: As the COVID-19 pandemic evolves, stratifying risk is increasingly important. The Intermountain Risk Score (IMRS) uses the complete blood count (CBC) and basic metabolic profile (BMP) as a first-line predictor of mortality and is widely validated. We hypothesized that IMRS predicts COVID-19 outcomes. Methods: Intermountain Healthcare patients aged ≥18 years were evaluated if they had CBC and BMP measured in 2019 and tested positive for COVID-19 in 2020. Viral RNA testing for severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) was conducted March 3 through November 2, 2020. IMRS used published sex-specific weightings and associations were evaluated for the composite of COVID-19 hospitalization or mortality. Findings: Among 3,883 patients, 8.2% were hospitalized, 1.6% died. Subjects with low, mild, moderate, and high-risk IMRS had the composite endpoint in 3.5% (52/1,502), 8.6% (108/1,256), 15.5% (152/979), and 28.1% (41/146), respectively. Versus low-risk, subjects in mild, moderate, and high-risk groups had HR=2.33 (95% CI: 1.67, 3.24), HR=4.01 (CI: 2.93, 5.50), and HR=8.34 (CI: 5.54, 12.57), respectively. Subjects aged
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- 2021
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12. Evolution in disease severity during the E-cigarette or Vaping-Associated Lung Injury (EVALI) outbreak
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David Guidry, Colin K. Grissom, Dave S. Collingridge, Braden Anderson, Michael J. Lanspa, Susan Rea, Dixie Harris, Denitza P. Blagev, and Sean J. Callahan
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Mechanical ventilation ,medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Outbreak ,Lung injury ,medicine.disease_cause ,Exact test ,Primary outcome ,Respiratory failure ,Disease severity ,Emergency medicine ,medicine ,business ,Nasal cannula - Abstract
Introduction: In 2019, the USA experienced an outbreak of E-cigarette or Vaping-Associated Lung Injury (EVALI). Clinicians, government, and media publicized the EVALI outbreak. We hypothesized that such publicity might yield a trend of earlier presentation with less severe disease as the outbreak continued. Methods: We studied all patients who presented with EVALI at an Intermountain hospital or clinic between the first case (Jun 27, 2019) and Jan 9, 2020. We compared patients who presented early in the outbreak (prior to date of median case) to those who presented later. Our primary outcome was hospital length-of-stay (LOS), with secondary outcomes of ICU admission and respiratory failure (receipt of mechanical ventilation, non-invasive positive pressure ventilation, or high-flow nasal cannula). We used Wilcoxon rank-sum for comparison of central tendencies and Fisher’s exact test for proportions. We modeled association between date and hospital LOS and respiratory failure using regression. Results: We identified 114 patients from 13 centers. Median age was 28, 67% were male. Patients presenting later in the outbreak had shorter LOS compared to those who presented early (median 3 days, IQR 1-5 vs. 5, IQR 2-8, p Conclusions: Hospital LOS and respiratory failure decreased during the EVALI outbreak, suggesting milder presentation as the outbreak progressed.
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- 2020
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13. Prevalence of diagnoses and comorbid conditions in patients with e-cigarette, or vaping, associated lung injury (EVALI)
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Dave S. Collingridge, Michael J. Lanspa, Colin K. Grissom, Braden Anderson, David Guidry, Denitza P. Blagev, Dixie Harris, Sean J. Callahan, and Susan Rea
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medicine.medical_specialty ,business.industry ,Internal medicine ,Medicine ,In patient ,Medical diagnosis ,Lung injury ,business - Published
- 2020
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14. Blood Eosinophil Count and Hospital Readmission in Patients with Acute Exacerbation of Chronic Obstructive Pulmonary Disease
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Matthew J, Hegewald, Benjamin D, Horne, Frank, Trudo, James L, Kreindler, Yen, Chung, Susan, Rea, and Denitza P, Blagev
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Eosinophils ,Leukocyte Count ,Pulmonary Disease, Chronic Obstructive ,AECOPD ,phenotype ,Disease Progression ,electronic medical records ,Humans ,biomarkers ,eosinophils ,Patient Readmission ,Retrospective Studies ,Original Research - Abstract
Purpose This retrospective, observational cohort study investigated the association of blood eosinophil counts within 1 week of hospitalization for acute exacerbation of COPD (AECOPD) with subsequent risk of all-cause and COPD-related readmission from a large integrated health system. Patients and Methods Electronic medical records were extracted for index hospitalization for AECOPD at all Intermountain Healthcare hospitals. The primary outcome was the relationship of blood eosinophil count to 30-day all-cause readmission; secondary outcomes were 60-day, 90-day, and 12-month all-cause readmission, COPD-related readmission, and empiric derivation of the eosinophil count with the highest area under the curve (AUC) for predicting 30-day all-cause readmission. Results Of 2445 included patients, 1935 (79%) had a blood eosinophil count
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- 2020
15. Explainable AI in Healthcare
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Susan Rea, Urja Pawar, Ruairi O'Reilly, and Donna O'Shea
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Computer science ,business.industry ,Transparency (graphic) ,Accountability ,Health care ,Tracing ,business ,Data science ,GeneralLiterature_MISCELLANEOUS ,Wearable technology ,Domain (software engineering) ,Health data ,Ai systems - Abstract
Artificial Intelligence (AI) is an enabling technology that when integrated into healthcare applications and smart wearable devices such as Fitbits etc. can predict the occurrence of health conditions in users by capturing and analysing their health data. The integration of AI and smart wearable devices has a range of potential applications in the area of smart healthcare but there is a challenge in the black box operation of decisions made by AI models which have resulted in a lack of accountability and trust in the decisions made. Explainable AI (XAI) is a domain in which techniques are developed to explain predictions made by AI systems. In this paper, XAI is discussed as a technique that can used in the analysis and diagnosis of health data by AI-based systems and a proposed approach presented with the aim of achieving accountability. transparency, result tracing, and model improvement in the domain of healthcare.
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- 2020
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16. A DLT-based Trust Framework for IoT Ecosystems
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Tharindu Ranathunga, Susan Rea, Alan McGibney, and Ramona Marfievici
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Workflow ,Computer science ,Reliability (computer networking) ,Scalability ,Context (language use) ,Single point of failure ,Transparency (human–computer interaction) ,Architecture ,Computer security ,computer.software_genre ,Resilience (network) ,computer - Abstract
An IoT eco-system includes IoT network components, network services and network participants such as organizations, consumers, governments, and businesses. Due to its diversity and scale, trustworthiness is a critical concern to be considered during architectural design and the operational phase of these eco-systems. To do this, security, privacy, reliability, resilience and safety must be assured. However, existing solutions partially address these requirements using centralized approaches that come with challenges such as a single point of failure, scalability, and dependence on a third party. In this context, Distributed Ledger Technology (DLT) and Smart Contracts, due to its intrinsic properties of transparency, immutability, and underlying secure-by-design architecture, allows distributed, decentralized, automated workflows, which can be incorporated to automate the management of the next generation IoT networks. In this paper, we propose a framework for IoT eco-systems providing seamless integration between IoT and DLT to create a decentralized trusted architecture, which ensures trustworthiness of IoT eco-systems at design time and a trust reputation model based on the architecture to protect it during the run-time. Furthermore, we have presented the initial steps towards the implementation of this framework.
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- 2020
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17. Short Term Follow-Up and Readmission Risk Factors in Patients with E-Cigarette, or Vaping, Associated Lung Injury (EVALI)
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Michael J. Lanspa, Britt Anderson, Colin K. Grissom, David Guidry, Susan Rea, Dixie Harris, Denitza P. Blagev, and Sean J. Callahan
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medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,In patient ,Lung injury ,business ,Readmission risk ,Term (time) - Published
- 2020
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18. MAllEC: Fast and Optimal Scheduling of Energy Consumption for Energy Harvesting Devices
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Susan Rea, Alan McGibney, and Victor Cionca
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Battery (electricity) ,Computer Networks and Communications ,Computer science ,Network packet ,Real-time computing ,020206 networking & telecommunications ,02 engineering and technology ,Energy consumption ,Solar irradiance ,020202 computer hardware & architecture ,Computer Science Applications ,Power (physics) ,Scheduling (computing) ,Hardware and Architecture ,Signal Processing ,0202 electrical engineering, electronic engineering, information engineering ,Energy level ,Energy harvesting ,Time complexity ,Energy (signal processing) ,Information Systems - Abstract
Energy consumption scheduling algorithms allow energy harvesting Internet of Things (IoT) devices to maximize the amount of harvested energy that they consume, while maintaining uninterrupted, indefinite, operation. The existing works in the area show a tradeoff between solution quality and computational complexity. At one end fast but suboptimal algorithms can lead to energy waste and power outages. At the other, optimal algorithms are computationally prohibitive for the constrained hardware of the IoT. This paper argues that the tradeoff can be avoided, and presents the MAllEC energy consumption scheduler that maximizes the allowed energy consumption while minimizing energy waste and power outages, with linear time complexity. MAllEC is compared against the state of the art through simulations using long term (14 years) traces of solar irradiance, and shown to consistently achieve the minimum energy waste and power outage. The linear time complexity of MAllEC is measured on constrained IoT hardware (8-bit Tmote Sky) to be low enough so that MAllEC can be executed unintrusively. This paper provides proof of MAllEC’s optimality and shows that, in an application with dynamic, adjustable packet rate, MAllEC can maintain indefinite, uninterruptible, operation at an average rate of almost 100 packets per minute, where a 3-Ah battery powered device, at the same rate, would deplete after less than 200 days.
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- 2018
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19. Laboratory-Based Intermountain Validated Exacerbation (LIVE) Score and Palliative Care Referrals in Patients with Chronic Obstructive Pulmonary Disease
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Valerie G. Press, Denitza P. Blagev, Richard A. Mularski, Mehrdad Arjomandi, Siyang Zeng, Susan Rea, and Dave S. Collingridge
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medicine.medical_specialty ,Palliative care ,Exacerbation ,business.industry ,Emergency medicine ,medicine ,Pulmonary disease ,In patient ,business - Published
- 2019
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20. Creation and Validation of the Summit Score for Mortality and Morbidity Risk Stratification and Therapeutic Use for Chronic Obstructive Pulmonary Disease
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Tami L Bair, D.P. Blagev, Matthew J. Hegewald, Susan Rea, and Benjamin D. Horne
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geography ,medicine.medical_specialty ,Summit ,geography.geographical_feature_category ,business.industry ,Morbidity risk ,medicine ,Pulmonary disease ,Intensive care medicine ,business ,Stratification (mathematics) - Published
- 2019
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21. SHORT-TERM PULMONARY FUNCTION TEST CHARACTERISTICS IN PATIENTS DIAGNOSED WITH E-CIGARETTE- OR VAPING-ASSOCIATED LUNG INJURY
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Braden Anderson, David Guidry, Colin K. Grissom, Denitza P. Blagev, Michael J. Lanspa, Dixie Harris, and Susan Rea
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,In patient ,Lung injury ,Cardiology and Cardiovascular Medicine ,Critical Care and Intensive Care Medicine ,business ,Pulmonary function testing ,Term (time) - Published
- 2020
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22. Comparative evaluation of the clinical laboratory-based Intermountain risk score with the Charlson and Elixhauser comorbidity indices for mortality prediction
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Jeffrey L. Anderson, Joseph Bledsoe, Gregory L. Snow, Benjamin D. Horne, Emily L. Wilson, Susan Rea, Allison M. Butler, and Sarah Majercik
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Male ,Physiology ,Electronic Medical Records ,030204 cardiovascular system & hematology ,Geographical locations ,Database and Informatics Methods ,Mathematical and Statistical Techniques ,0302 clinical medicine ,Animal Cells ,Utah ,Medicine and Health Sciences ,Hospital Mortality ,030212 general & internal medicine ,Aged, 80 and over ,Univariate analysis ,Multidisciplinary ,Framingham Risk Score ,Mortality rate ,Statistics ,Clinical Laboratory Services ,Middle Aged ,Prognosis ,Hospitals ,Body Fluids ,Blood ,Master file ,Predictive value of tests ,Physical Sciences ,Medicine ,Female ,Anatomy ,Cellular Types ,Research Article ,Cohort study ,Adult ,Platelets ,medicine.medical_specialty ,Patients ,Death Rates ,Science ,Health Informatics ,Research and Analysis Methods ,Risk Assessment ,03 medical and health sciences ,Population Metrics ,Predictive Value of Tests ,Internal medicine ,medicine ,Humans ,Statistical Methods ,Aged ,Inpatients ,Blood Cells ,Population Biology ,business.industry ,Proportional hazards model ,Biology and Life Sciences ,Cell Biology ,medicine.disease ,Comorbidity ,United States ,Blood Counts ,Health Care ,Health Care Facilities ,North America ,People and places ,business ,Mathematics ,Forecasting - Abstract
Background The Charlson and Elixhauser comorbidity indices are mortality predictors often used in clinical, administrative, and research applications. The Intermountain Mortality Risk Scores (IMRS) are validated mortality predictors that use all factors from the complete blood count and basic metabolic profile. How IMRS, Charlson, and Elixhauser relate to each other is unknown. Methods All inpatient admissions except obstetric patients at Intermountain Healthcare’s 21 adult care hospitals from 2010–2014 (N = 197,680) were examined in a observational cohort study. The most recent admission was a patient’s index encounter. Follow-up to 2018 used hospital death records, Utah death certificates, and the Social Security death master file. Three Charlson versions, 8 Elixhauser versions, and 3 IMRS formulations were evaluated in Cox regression and the one of each that was most predictive was used in dual risk score mortality analyses (in-hospital, 30-day, 1-year, and 5-year mortality). Results Indices with the strongest mortality associations and selected for dual score study were the age-adjusted Charlson, the van Walraven version of the acute Elixhauser, and the 1-year IMRS. For in-hospital mortality, Charlson (c = 0.719; HR = 4.75, 95% CI = 4.45, 5.07), Elixhauser (c = 0.783; HR = 5.79, CI = 5.41, 6.19), and IMRS (c = 0.821; HR = 17.95, CI = 15.90, 20.26) were significant predictors (p
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- 2020
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23. Assistive Smart, Structured 3D Environmental Information for the Visually Impaired and Blind: Leveraging the INSPEX Concept
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Susan Rea, Loic Sevrin, Fabio Quaglia, David Rojas, Carl Jackson, Francois Birot, Christian Fabre, M. Correvon, Suzanne Lesecq, Julie Foucault, Andrea di Matteo, Richard Banach, John Barrett, Giuseppe Villa, Joseph Razavi, Laurent Ouvry, Gabriela Dudnik, Jean-Marc Van Gyseghem, Steve Buckley, Vincenza Di Palma, Nicolas Mareau, Florence Thiry, Rosemary O'Keeffe, Alan Mathewson, Olivier Debicki, Alan McGibney, Jean Herveg, Cian O'Murchu, and Nathalie Grandjean
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0209 industrial biotechnology ,020901 industrial engineering & automation ,Human–computer interaction ,Visually impaired ,Computer science ,020208 electrical & electronic engineering ,0202 electrical engineering, electronic engineering, information engineering ,02 engineering and technology - Published
- 2018
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24. Stability of Frequency of Severe Chronic Obstructive Pulmonary Disease Exacerbations and Health Care Utilization in Clinical Populations
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Susan Rea, Valerie G. Press, Mehrdad Arjomandi, Siyang Zeng, Denitza P. Blagev, Kyle A Carey, Dave S. Collingridge, Richard A. Mularski, and Matthew M. Churpek
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Exacerbation ,Chronic Obstructive Pulmonary Disease ,Clinical Trials and Supportive Activities ,Pulmonary disease ,macromolecular substances ,Severe chronic obstructive pulmonary disease ,03 medical and health sciences ,COPD exacerbation ,0302 clinical medicine ,Clinical Research ,Internal medicine ,health care utilization ,Health care ,Medicine ,COPD ,030212 general & internal medicine ,Veterans Affairs ,Lung ,Original Research ,business.industry ,stability ,Health Services ,medicine.disease ,respiratory tract diseases ,Infectious Diseases ,Good Health and Well Being ,030228 respiratory system ,Copd exacerbation ,Cohort ,Respiratory ,business - Abstract
Rationale: Although chronic obstructive pulmonary disease (COPD) exacerbation frequency is stable in research cohorts, whether severe COPD exacerbation frequency can be used to identify patients at high risk for future severe COPD exacerbations and/or mortality is unknown. Methods: Severe COPD exacerbation frequency stability was determined in 3 distinct clinical cohorts. A total of 17,450 patients with COPD in Intermountain Healthcare were categorized based on the number of severe COPD exacerbations per year. We determined whether exacerbation frequency was stable and whether it predicted mortality. These findings were validated in 83,134 patients from the U.S. Veterans Affairs (VA) nationwide health care system and 3326 patients from the University of Chicago Medicine health system. Results: In the Intermountain Healthcare cohort, the majority (84%, 14,706 patients) had no exacerbations in 2009 and were likely to remain non-exacerbators with a significantly lower 6-year mortality compared with frequent exacerbators (2 or more exacerbations per year) (25% versus 57%, p
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- 2018
25. Epidemiology and Clinical Features of Invasive Fungal Infection in a US Health Care Network
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James Spalding, Brandon J. Webb, Susan Rea, Jeffrey P. Ferraro, Stephanie Kaufusi, and Bruce E. Goodman
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0301 basic medicine ,medicine.medical_specialty ,medicine.medical_treatment ,030106 microbiology ,Population ,invasive fungal infection ,mucormycosis ,03 medical and health sciences ,Internal medicine ,Epidemiology ,Major Article ,medicine ,Coccidioides ,education ,Immunodeficiency ,Candida ,education.field_of_study ,biology ,business.industry ,Incidence (epidemiology) ,Mucormycosis ,Immunosuppression ,medicine.disease ,biology.organism_classification ,Editor's Choice ,Aspergillus ,030104 developmental biology ,Infectious Diseases ,Oncology ,Cohort ,epidemiology ,business - Abstract
Background A better understanding of the epidemiology and clinical features of invasive fungal infection (IFI) is integral to improving outcomes. We describe a novel case-finding methodology, reporting incidence, clinical features, and outcomes of IFI in a large US health care network. Methods All available records in the Intermountain Healthcare Enterprise Data Warehouse from 2006 to 2015 were queried for clinical data associated with IFI. The resulting data were overlaid in 124 different combinations to identify high-probability IFI cases. The cohort was manually reviewed, and exclusions were applied. European Organization for Research and Treatment of Cancer/Invasive Fungal Infections Cooperative Group and the National Institute of Allergy and Infectious Diseases Mycoses Study Group Consensus Group definitions were adapted to categorize IFI in a broad patient population. Linear regression was used to model variation in incidence over time. Results A total of 3374 IFI episodes occurred in 3154 patients. The mean incidence was 27.2 cases/100 000 patients per year, and there was a mean annual increase of 0.24 cases/100 000 patients (P = .21). Candidiasis was the most common (55%). Dimorphic fungi, primarily Coccidioides spp., comprised 25.1% of cases, followed by Aspergillus spp. (8.9%). The median age was 55 years, and pediatric cases accounted for 13%; 26.1% of patients were on immunosuppression, 14.9% had autoimmunity or immunodeficiency, 13.3% had active malignancy, and 5.9% were transplant recipients. Lymphopenia preceded IFI in 22.1% of patients. Hospital admission occurred in 76.2%. The median length of stay was 16 days. All-cause mortality was 17.0% at 42 days and 28.8% at 1 year. Forty-two-day mortality was highest in Aspergillus spp. (27.5%), 20.5% for Candida, and lowest for dimorphic fungi (7.5%). Conclusions In this population, IFI was not uncommon, affected a broad spectrum of patients, and was associated with high crude mortality.
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- 2018
26. Generating Models for Model Predictive Control in Buildings
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Susan Rea, Kritchai Witheephanich, Clement Fauvel, Alan McGibney, Suzanne Lesecq, Commissariat à l'énergie atomique et aux énergies alternatives - Laboratoire d'Electronique et de Technologie de l'Information (CEA-LETI), Direction de Recherche Technologique (CEA) (DRT (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), NIMBUS Centre [Cork] (NIMBUS), Cork Institute of Technology (CIT), and European Project: 676760,H2020,H2020-EeB-2015,TOPAs(2015)
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Computer science ,Energy management ,model predictive control ,energy management system ,Control (management) ,System identification ,lcsh:A ,Astrophysics::Cosmology and Extragalactic Astrophysics ,7. Clean energy ,Industrial engineering ,Energy management system ,modelling ,Model predictive control ,Distributive property ,Software deployment ,[INFO.INFO-AU]Computer Science [cs]/Automatic Control Engineering ,building ,lcsh:General Works ,Efficient energy use - Abstract
International audience; There are strong policy drivers for the promotion of energy efficiency in buildings. In the literature, Model Predictive Control (MPC) is seen as a promising solution to deal with the energy management problem in buildings. Model identification is the primary task involved in the design of MPC control and defining the good level of complexity for the thermal dynamic model is a critical question. This paper focuses on the development of reliable models that can be used to support the deployment of (Distributive (Di)) MPC application.
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- 2018
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27. QoS-Aware Routing for Industrial Wireless Sensor Networks
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Dirk Pesch, Susan Rea, and Berta Carballido Villaverde
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Dynamic Source Routing ,Zone Routing Protocol ,Key distribution in wireless sensor networks ,Link-state routing protocol ,business.industry ,Computer science ,Multipath routing ,Mobile wireless sensor network ,Wireless Routing Protocol ,business ,Wireless sensor network ,Computer network - Published
- 2017
- Full Text
- View/download PDF
28. Industrial Wireless Sensor Networks
- Author
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Honggang Wang, Nouha Oualha, Elif Uysal, Mikael Gidlund, Ozgur Gurbuz, Ozlem Durmaz Incel, Dirk Pesch, and Susan Rea
- Subjects
Flexibility (engineering) ,Engineering ,Standardization ,business.industry ,Software deployment ,Network security ,Systems engineering ,Electrical engineering ,Wireless ,Resource management ,business ,Automation ,Wireless sensor network - Abstract
The collaborative nature of industrial wireless sensor networks (IWSNs) brings several advantages over traditional wired industrial monitoring and control systems, including self-organization, rapid deployment, flexibility, and inherent intelligent processing. In this regard, IWSNs play a vital role in creating more reliable, efficient, and productive industrial systems, thus improving companies competitiveness in the marketplace. Industrial Wireless Sensor Networks: Applications, Protocols, and Standards examines the current state of the art in industrial wireless sensor networks and outlines future directions for research. What Are the Main Challenges in Developing IWSN Systems? Featuring contributions by researchers around the world, this book explores the software and hardware platforms, protocols, and standards that are needed to address the unique challenges posed by IWSN systems. It offers an in-depth review of emerging and already deployed IWSN applications and technologies, and outlines technical issues and design objectives. In particular, the book covers radio technologies, energy harvesting techniques, and network and resource management. It also discusses issues critical to industrial applications, such as latency, fault tolerance, synchronization, real-time constraints, network security, and cross-layer design. A chapter on standards highlights the need for specific wireless communication standards for industrial applications. A Starting Point for Further Research Delving into wireless sensor networks from an industrial perspective, this comprehensive work provides readers with a better understanding of the potential advantages and research challenges of IWSN applications. A contemporary reference for anyone working at the cutting edge of industrial automation, communication systems, and networks, it will inspire further exploration in this promising research area.
- Published
- 2017
- Full Text
- View/download PDF
29. The Laboratory-Based Intermountain Validated Exacerbation (LIVE) Score Identifies Chronic Obstructive Pulmonary Disease Patients at High Mortality Risk
- Author
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Denitza P. Blagev, Dave S. Collingridge, Susan Rea, Benjamin D. Horne, Valerie G. Press, Matthew M. Churpek, Kyle A. Carey, Richard A. Mularski, Siyang Zeng, and Mehrdad Arjomandi
- Subjects
medicine.medical_specialty ,Exacerbation ,Psychological intervention ,Recursive partitioning ,risk stratification ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,COPD ,informatics ,030212 general & internal medicine ,LIVE Score ,Veterans Affairs ,Original Research ,lcsh:R5-920 ,business.industry ,General Medicine ,medicine.disease ,Comorbidity ,3. Good health ,comorbidity ,030228 respiratory system ,Informatics ,Cohort ,Medicine ,lcsh:Medicine (General) ,business ,cluster analysis - Abstract
Background: Identifying COPD patients at high risk for mortality or healthcare utilization remains a challenge. A robust system for identifying high-risk COPD patients using Electronic Health Record (EHR) data would empower targeting interventions aimed at ensuring guideline compliance and multimorbidity management. The purpose of this study was to empirically derive, validate, and characterize subgroups of COPD patients based on routinely collected clinical data widely available within the EHR.Methods: Cluster analysis was used in 5,006 patients with COPD at Intermountain to identify clusters based on a large collection of clinical variables. Recursive Partitioning (RP) was then used to determine a preferred tree that assigned patients to clusters based on a parsimonious variable subset. The mortality, COPD exacerbations, and comorbidity profile of the identified groups were examined. The findings were validated in an independent Intermountain cohort and in external cohorts from the United States Veterans Affairs (VA) and University of Chicago Medicine systems.Measurements and Main Results: The RP algorithm identified five LIVE Scores based on laboratory values: albumin, creatinine, chloride, potassium, and hemoglobin. The groups were characterized by increasing risk of mortality. The lowest risk, LIVE Score 5 had 8% 4-year mortality vs. 56% in the highest risk LIVE Score 1 (p < 0.001). These findings were validated in the VA cohort (n = 83,134), an expanded Intermountain cohort (n = 48,871) and in the University of Chicago system (n = 3,236). Higher mortality groups also had higher COPD exacerbation rates and comorbidity rates.Conclusions: In large clinical datasets across different organizations, the LIVE Score utilizes existing laboratory data for COPD patients, and may be used to stratify risk for mortality and COPD exacerbations.
- Published
- 2017
30. Tales from the C130 Horror Room
- Author
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Susan Rea, Dirk Pesch, Alan McGibney, David Rojas, Pablo Corbalán, and Ramona Marfievici
- Subjects
Computer science ,Network packet ,business.industry ,Reliability (computer networking) ,010401 analytical chemistry ,Real-time computing ,020206 networking & telecommunications ,02 engineering and technology ,01 natural sciences ,0104 chemical sciences ,Network planning and design ,Noise ,Software deployment ,0202 electrical engineering, electronic engineering, information engineering ,Wireless ,Data center ,business ,Wireless sensor network - Abstract
An important aspect of the management and control of modern data centers is cooling and energy optimization. Airflow and temperature measurements are key components for modeling and predicting environmental changes and cooling demands. For this, a wireless sensor network (WSN) can facilitate the sensor deployment and data collection in a changing environment. However, the challenging characteristics of these scenarios, e.g., temperature fluctuations, noise, and large amounts of metal surfaces and wiring, make it difficult to predict network behavior and therefore network planning and deployment. In this paper we report a 17-month long deployment of 30 wireless sensor nodes in a small data center room, where temperature, humidity and airflow were collected, along with RSSI, LQI, and battery voltage. After an initial unreliable period, a connectivity assessment performed on the network revealed a high noise floor in some of the nodes, which together with a default low CCA threshold triggered no packet transmissions, yielding a low PDR for those nodes. Increasing the CCA setting and relocating the sink allowed the network to achieve a reliability of 99.2% for the last eight months of the deployment, therefore complying with the project requirements. This highlights the necessity of using proper tools and dependable protocols, and defining design methodologies for managing and deploying WSNs in real-world environments.
- Published
- 2017
- Full Text
- View/download PDF
31. Identifying COPD patients at risk for hospitalizations and Emergency Department Visits using the Electronic Medical Record
- Author
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Dave S. Collingridge, Susan Rea, and Denitza P. Blagev
- Subjects
Copd patients ,business.industry ,medicine ,Electronic medical record ,Medical emergency ,Emergency department ,medicine.disease ,business - Published
- 2017
- Full Text
- View/download PDF
32. Constrained model predictive control for operation of a building-integrated microgrid
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Susan Rea, Samira Roshany-Yamchi, Kritchai Witheephanich, and Alan McGibney
- Subjects
Cogeneration ,Model predictive control ,Cost efficiency ,Computer science ,020209 energy ,Storage tank ,Hybrid system ,Control (management) ,0202 electrical engineering, electronic engineering, information engineering ,02 engineering and technology ,Microgrid ,Energy (signal processing) ,Reliability engineering - Abstract
Building energy consumption in Ireland makes accounts for 40% of total energy usage, so reducing building energy usage is of great importance. Building integration with microgrids offers a transition to a more energy and cost efficient infrastructure with more fine grained control being possible. To guarantee microgrid stability and efficient operation, this paper formulates a constrained model predictive control problem by using a simplified hybrid system model with logic constraints; and building load and energy price predictions for the dynamic energy management of the microgrid. In terms of a use case we focus on the microgrid installed at our research building comprising of a combined heat and power unit/boilers/storage tank/battery bank. The effectiveness of the proposed control algorithm is illustrated through numerical simulations.
- Published
- 2017
- Full Text
- View/download PDF
33. Identifying risk groups for any cause hospitalizations in COPD patients
- Author
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Dave S. Collingridge, Susan Rea, and Denitza P. Blagev
- Subjects
medicine.medical_specialty ,Risk groups ,Copd patients ,business.industry ,Internal medicine ,medicine ,business - Published
- 2017
- Full Text
- View/download PDF
34. Globally Optimised Energy-Efficient Data Centres
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V. Zavrel, Susan Rea, Robert Birke, Lara Lopez, Vassilios A. Tsachouridis, Thomas Scherer, Jan Hensen, J. Ignacio Torrens, Enric Pages, Diarmuid Grimes, Ton Engbersen, Dirk Pesch, Deepak Mehta, Barry O'Sullivan, Jacinta Townley, and Lydia Y. Chen
- Subjects
Computer science ,020206 networking & telecommunications ,02 engineering and technology ,Thermal management of electronic devices and systems ,7. Clean energy ,Energy analysis ,Reliability engineering ,Workload management ,020204 information systems ,0202 electrical engineering, electronic engineering, information engineering ,Energy efficient data centres ,Thermal management ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,Integrated data centre energy management platform ,Efficient energy use - Abstract
Data centres are part of today's critical information and communication infrastructure, and the majority of business transactions as well as much of our digital life now depend on them. At the same time, data centres are large primary energy consumers, with energy consumed by IT and server room air conditioning equipment and also by general building facilities. In many data centres, IT equipment energy and cooling energy requirements are not always coordinated, so energy consumption is not optimised. Most data centres lack an integrated energy management system that jointly optimises and controls all its energy consuming equipments in order to reduce energy consumption and increase the usage of local renewable energy sources. In this chapter, the authors discuss the challenges of coordinated energy management in data centres and present a novel scalable, integrated energy management system architecture for data centre wide optimisation. A prototype of the system has been implemented, including joint workload and thermal management algorithms. The control algorithms are evaluated in an accurate simulation‐based model of a real data centre. Results show significant energy savings potential, in some cases up to 40%, by integrating workload and thermal management.
- Published
- 2017
- Full Text
- View/download PDF
35. INSPEX: Optimize Range Sensors for Environment Perception as a Portable System
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Susan Rea, Fabio Quaglia, Steve Buckley, Gabriela Dudnik, Francois Birot, Julie Foucault, M. Correvon, Vincenza Di Palma, Joseph Razavi, Hugues de Chaumont, John Barrett, Marco Passoni, Andrea di Matteo, Laurent Ouvry, Jean Herveg, Richard Banach, Alan McGibney, Cian O'Murchu, Rosemary O'Keeffe, Nicolas Mareau, Olivier Debicki, Tiana Rakotovao, and Suzanne Lesecq
- Subjects
LiDAR ,Portable device ,Wearable ,Computer science ,Real-time computing ,Ultra-wideband radar ,Wearable computer ,02 engineering and technology ,Smart system ,lcsh:Chemical technology ,01 natural sciences ,Biochemistry ,Article ,Analytical Chemistry ,law.invention ,Visually impaired and blind (VIB) ,law ,Ultrasound ,Obstacle avoidance ,lcsh:TP1-1185 ,Electrical and Electronic Engineering ,Radar ,Instrumentation ,Environment perception ,010401 analytical chemistry ,Data fusion ,021001 nanoscience & nanotechnology ,Sensor fusion ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Lidar ,Obstacle ,Robot ,0210 nano-technology ,Portable - Abstract
Environment perception is crucial for the safe navigation of vehicles and robots to detect obstacles in their surroundings. It is also of paramount interest for navigation of human beings in reduced visibility conditions. Obstacle avoidance systems typically combine multiple sensing technologies (i.e., LiDAR, radar, ultrasound and visual) to detect various types of obstacles under different lighting and weather conditions, with the drawbacks of a given technology being offset by others. These systems require powerful computational capability to fuse the mass of data, which limits their use to high-end vehicles and robots. INSPEX delivers a low-power, small-size and lightweight environment perception system that is compatible with portable and/or wearable applications. This requires miniaturizing and optimizing existing range sensors of different technologies to meet the user&rsquo, s requirements in terms of obstacle detection capabilities. These sensors consist of a LiDAR, a time-of-flight sensor, an ultrasound and an ultra-wideband radar with measurement ranges respectively of 10 m, 4 m, 2 m and 10 m. Integration of a data fusion technique is also required to build a model of the user&rsquo, s surroundings and provide feedback about the localization of harmful obstacles. As primary demonstrator, the INSPEX device will be fixed on a white cane.
- Published
- 2019
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- View/download PDF
36. R4Platform: A Reliable Data Platform For Continuous Performance Auditing In Buildings
- Author
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Alan McGibney, Jean Michel Rubillon, and Susan Rea
- Subjects
Wireless Sensor Networks, Energy Management, Open BMS - Abstract
This poster presents the R4Platform which provides an integrated set of tools and services that can be used as an enabler for continuous performance auditing in the built environment. The objective is to provide a modular set of components that when composed can provide an end-to-end auditing system for building managers, ESCOs and energy providers. The poster will present the platform architecture and its application in a real world environment, this will include a visual demonstration of the platform., The authors wish to acknowledge the support of Enterprise Ireland under commercialisation fund programme CF2014-4623A part of the ERDF2014-2020
- Published
- 2017
- Full Text
- View/download PDF
37. TOPAs, an IoT Driven Framework for Energy Efficiency in Buildings
- Author
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Alan McGibney, Dominik Wystrcil, Maxime Louvel, Susan Rea, Joern Ploennigs, Suzanne Lesecq, Nicolas Réhault, and Publica
- Subjects
Thermische Anlagen und Gebäudetechnik ,Open platform ,Computer science ,Process (engineering) ,IoT platform ,energy prediction modelling ,lcsh:A ,02 engineering and technology ,Audit ,01 natural sciences ,7. Clean energy ,Performance audit ,0103 physical sciences ,11. Sustainability ,building operation ,010302 applied physics ,Building management system ,performance gap ,Betriebsführung und Gesamtenergiekonzept ,Energy consumption ,021001 nanoscience & nanotechnology ,buildings ,auditing ,Core (game theory) ,Risk analysis (engineering) ,13. Climate action ,Gebäudeenergietechnik ,lcsh:General Works ,0210 nano-technology ,Efficient energy use - Abstract
The energy consumption of buildings lies often far above the performance objectives of the design phase. This is due to several factors among other serious deficits in the energy operation of building services. TOPAs adopts the principle of continuous performance auditing by not only considering energy use but also knowledge and understanding of the buildings use and their climatic state. Thus it provides a holistic performance auditing process through supporting tools and methodologies that try to minimise the gap between predicted and actual energy use. TOPAs offers an open BMS (Building Management System) IoT driven framework. This framework is composed of core services to connect to any BMS and aggregate all the information in an open platform. Add-on services are also available to improve the understanding of buildings and reduce further the gap.
- Published
- 2017
- Full Text
- View/download PDF
38. Provisioning within a WSAN cloud concept
- Author
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Susan Rea, Dirk Pesch, and Muhammad Sohaib Aslam
- Subjects
System of systems ,Service (systems architecture) ,business.industry ,Computer science ,End user ,Distributed computing ,Provisioning ,Cloud computing ,Network as a service ,Computer Science (miscellaneous) ,Orchestration (computing) ,Software architecture ,business ,Engineering (miscellaneous) - Abstract
Traditionally, Wireless Sensor and Actuator Networks or ( WSANs ) have been used as a standalone technology for a specific application purpose such as heating control. The current growth in embedded ICT infrastructure is leading to the deployment of a wide range of embedded systems in our environment, which motivates System of Systems [5] architectures and ultimately, with deployment of IP technologies into this space, the Internet of Things [10] paradigm. However, to simplify system operation and maintenance as well as to reduce costs, WSANs must become an infrastructure that is capable of providing services to multiple end users concurrently rather than requiring a new infrastructure for a new purpose. Here, we present the concept of a WSAN infrastructure as a WSAN Cloud , which provides services to multiple application and data collection systems following the cloud computing paradigm. Each instance of the WSAN cloud (i.e. a specific set of services configured by a particular end user/system) utilises the WSAN infrastructure as if it was a unique network provisioned for specific requirements. A realisation of the WSAN Cloud in the form of Network as a Service or NaaS requires a WSAN to support a service orientated software architecture allowing other systems to provision the WSAN infrastructure for their specific needs and allowing multiple systems to use the WSAN uniquely and concurrently. The WSAN-Service Orchestration Architecture " WSAN-SOrA " presented here, is a novel approach to service provisioning of embedded networked systems and enables WSANs to act as cloud ready infrastructures that facilitate on-demand provisioning for potentially multiple individual backend systems.
- Published
- 2013
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- View/download PDF
39. Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project
- Author
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Les Westberg, Christopher G. Chute, Susan Rea, Peter J. Haug, Thomas A. Oniki, Jyotishman Pathak, Cui Tao, Stanley M. Huff, Guergana Savova, Calvin E. Beebe, and Craig G. Parker
- Subjects
Service (systems architecture) ,Meaningful Use ,Standardization ,Computer science ,Health information technology ,Interoperability ,Health Informatics ,Health informatics ,Article ,World Wide Web ,Health care ,Diabetes Mellitus ,Electronic Health Records ,Humans ,Medical Informatics Applications ,Natural Language Processing ,business.industry ,Clinical Coding ,Health information exchange ,Genomics ,Models, Theoretical ,Data science ,Computer Science Applications ,Phenotype ,Informatics ,Database Management Systems ,business ,Algorithms - Abstract
Graphical abstractDisplay Omitted Highlights? Innovative technologies to accelerate meaningful use of health care IT are described. ? The SHARPn team is developing an open-source framework for EHR data interoperability. ? Parallel development of tools for patient phenotyping uses standardized EHR data. ? Disparate EHR data were normalized and accessed by a phenotyping rules engine. ? A data throughput test informed design of the framework. Challenges are discussed. The Strategic Health IT Advanced Research Projects (SHARP) Program, established by the Office of the National Coordinator for Health Information Technology in 2010 supports research findings that remove barriers for increased adoption of health IT. The improvements envisioned by the SHARP Area 4 Consortium (SHARPn) will enable the use of the electronic health record (EHR) for secondary purposes, such as care process and outcomes improvement, biomedical research and epidemiologic monitoring of the nation's health. One of the primary informatics problem areas in this endeavor is the standardization of disparate health data from the nation's many health care organizations and providers. The SHARPn team is developing open source services and components to support the ubiquitous exchange, sharing and reuse or 'liquidity' of operational clinical data stored in electronic health records. One year into the design and development of the SHARPn framework, we demonstrated end to end data flow and a prototype SHARPn platform, using thousands of patient electronic records sourced from two large healthcare organizations: Mayo Clinic and Intermountain Healthcare. The platform was deployed to (1) receive source EHR data in several formats, (2) generate structured data from EHR narrative text, and (3) normalize the EHR data using common detailed clinical models and Consolidated Health Informatics standard terminologies, which were (4) accessed by a phenotyping service using normalized data specifications. The architecture of this prototype SHARPn platform is presented. The EHR data throughput demonstration showed success in normalizing native EHR data, both structured and narrative, from two independent organizations and EHR systems. Based on the demonstration, observed challenges for standardization of EHR data for interoperable secondary use are discussed.
- Published
- 2012
- Full Text
- View/download PDF
40. InRout – A QoS aware route selection algorithm for industrial wireless sensor networks
- Author
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Susan Rea, Dirk Pesch, and Berta Carballido Villaverde
- Subjects
Routing protocol ,Wi-Fi array ,Computer Networks and Communications ,Network packet ,business.industry ,Computer science ,Distributed computing ,Quality of service ,Key distribution in wireless sensor networks ,Hardware and Architecture ,Sensor node ,Wireless ,Overhead (computing) ,business ,Wireless sensor network ,Selection algorithm ,Software ,Computer network - Abstract
Wireless sensor networks are a key enabling technology for industrial monitoring applications where the use of wireless infrastructure allows high adaptivity and low cost in terms of installation and retrofitting. To facilitate the move from the current wired designs to wireless designs, concerns regarding reliability must be satisfied. Current standardization efforts for industrial wireless systems lack specification on efficient routing protocols that mitigate reliability concerns. Consequently, this work presents the InRout route selection algorithm, where local information is shared among neighbouring nodes to enable efficient, distributed route selection while satisfying industrial application requirements and considering sensor node resource limitations. Route selection is described as a multi-armed bandit task and uses Q-learning techniques to obtain the best available solution with low overhead. A performance comparison with existing approaches demonstrates the benefits of the InRout algorithm, which satisfies typical quality of service requirements for industrial monitoring applications while considering sensor node resources. Simulation results show that InRout can provide gains ranging from 4% to 60% in the number of successfully delivered packets when compared to current approaches with much lower control overhead.
- Published
- 2012
- Full Text
- View/download PDF
41. BLOOD EOSINOPHIL COUNT AND SUBSEQUENT ANY-CAUSE HOSPITAL READMISSION RISK IN PATIENTS ADMITTED WITH ACUTE EXACERBATION OF CHRONIC OBSTRUCTIVE PULMONARY DISEASE
- Author
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Frank Trudo, Benjamin D. Horne, Matthew J. Hegewald, Susan Rea, Kathleen Fox, James Kreindler, and Denitza P. Blagev
- Subjects
Pulmonary and Respiratory Medicine ,Acute exacerbation of chronic obstructive pulmonary disease ,Hospital readmission ,medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,In patient ,Cardiology and Cardiovascular Medicine ,Critical Care and Intensive Care Medicine ,medicine.disease ,business ,Blood eosinophil - Published
- 2018
- Full Text
- View/download PDF
42. Any Resource Sharing via HWN* Routing
- Author
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Susan Rea, Dirk Pesch, and Chong Shen
- Subjects
Routing protocol ,Dynamic Source Routing ,Static routing ,Adaptive quality of service multi-hop routing ,Computer science ,Wireless ad hoc network ,business.industry ,Distributed computing ,ComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKS ,Policy-based routing ,Wireless Routing Protocol ,Multipath routing ,business ,Computer network - Abstract
In this paper we present an adaptive distributed cross-layer routing algorithm (ADCR) for hybrid wireless network with dedicated relay stations (HWN*). To support versatile multimedia communication for Mobile Terminals (MTs), the HWN* integrates a cellular network, an ad hoc network and fixed relay nodes (RNs). A MT may borrow cellular data channels that are available thousands mile away via secure multi-hop RNs, where RNs are placed at flexible locations in the network. The MT can also communicate with each other or access internet ubiquitously. We discuss cross media access and network layers routing issues. The ADCR establishes routing paths across RNs or cellular network while providing appropriate QoS (quality of service). Through simulation, we verify the routing performance benefits of HWN* over conventional cellular systems and other hybrid network frameworks. It is anticipated that the simulation results reported in this paper will serve as a guideline for research based on distributed source routing involving heterogeneous wireless technologies.
- Published
- 2008
- Full Text
- View/download PDF
43. Open BMS - IoT driven architecture for the internet of buildings
- Author
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Susan Rea, Joern Ploennigs, and Alan McGibney
- Subjects
Architectural engineering ,Engineering ,business.industry ,Energy management ,020208 electrical & electronic engineering ,05 social sciences ,02 engineering and technology ,7. Clean energy ,0202 electrical engineering, electronic engineering, information engineering ,Systems engineering ,Holistic management ,0501 psychology and cognitive sciences ,The Internet ,Architecture ,Internet of Things ,business ,050107 human factors - Abstract
This paper describes the creation of an IoT driven architecture to support the realization of an OpenBMS approach to managing blocks of buildings. The objective is to overcome the complexities of integration, operation and management of heterogeneous building systems by leveraging existing IoT approaches. The goal is to eliminate vertical data silos and enable the holistic management of energy across existing and new building blocks.
- Published
- 2016
- Full Text
- View/download PDF
44. Managing wireless sensor networks within IoT ecosystems
- Author
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Susan Rea, Alan McGibney, and Alejandro Esquiva Rodriguez
- Subjects
Service (systems architecture) ,Computer science ,Data stream mining ,media_common.quotation_subject ,Context (language use) ,Computer security ,computer.software_genre ,Negotiation ,Key distribution in wireless sensor networks ,Wireless sensor networks internet of things ,Ecosystem ,Reference architecture ,Wireless sensor network ,computer ,media_common - Abstract
Within the context of Internet of Things there is an expectation that devices will always be connected and an assumption that data will always be available, however there is little concern for the physical devices producing these data streams. There is a need to balance the appetite for data with the constraints and capabilities of the supporting physical infrastructure. This paper presents a management framework for wireless sensor networks within IoT ecosystems. This framework through cooperation and negotiation can lead to the creation of multiple virtual networks deployed over the same physical infrastructure to share resources, context, insight etc., in order to meet dynamic service requirements. This necessitates a shift from traditional management approaches focused on centralized management for bespoke solutions to the development of novel approaches for autonomous management via distributed intelligent gateways that proactively monitor and manage IoT WSN infrastructures to support multiple application verticals.
- Published
- 2015
- Full Text
- View/download PDF
45. Characterizing the Structure of a Patient's Care Team through Electronic Encounter Data Analysis
- Author
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Shan, He, Greg, Gurr, Susan, Rea, and Sidney N, Thornton
- Subjects
Access to Information ,Patient Care Team ,Data Mining ,Electronic Health Records ,Information Storage and Retrieval ,Practice Patterns, Physicians' ,United States - Abstract
As the field of medicine grows more complicated and doctors become more specialized in a particular field, the number of healthcare providers involved in healing an individual patient increases. This is particularly true of patients with multiple chronic conditions. Establishing effective communications among the care providers becomes critical to facilitate care coordination and more efficient resource use, which will ultimately result in health outcome improvement. The first step for care coordination is to understand who have been involved in a patient's care and their relationships with the patient. The widespread adoption of Electronic Health Records provides us an opportunity to explore solutions to well-coordinated care. This paper presents the concept of a patient's care team and demonstrates the feasibility of identifying relevant healthcare providers for an individual patient by leveraging electronic patient encounter data. Combined with network analysis techniques, we further visualize the care team structure with quantified strength of patient-provider relationships. Our work is foundational to the larger goal of patient-centered, coordinated care in the digital age of healthcare.
- Published
- 2015
46. Variation in Cohorts Derived from EHR Data in Four Care Delivery Settings
- Author
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Susan, Rea, Kent R, Bailey, Jyotishman, Pathak, and Peter J, Haug
- Subjects
Articles - Published
- 2015
47. Preferential expression of a mutant allele of the amplifiedMDR1 (ABCB1) gene in drug-resistant variants of a human sarcoma
- Author
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Norman J. Lacayo, Kevin G. Chen, Yan Wang, J. Martin Brown, George E. Duran, C. Dana Bangs, Susan Rea, Athena M. Cherry, Mary S. Kovacs, and Branimir I. Sikic
- Subjects
Regulation of gene expression ,Genetics ,Cancer Research ,Mutant ,Locus (genetics) ,Amplicon ,Biology ,Molecular biology ,Null allele ,Gene dosage ,polycyclic compounds ,Allele ,Gene - Abstract
Activation of the MDR1 (ABCB1) gene is a common event conferring multidrug resistance (MDR) in human cancers. We investigated MDR1 activation in MDR variants of a human sarcoma line, some of which express a mutant MDR1, which facilitated the study of allelic gene expression. Structural alterations of MDR1, gene copy numbers, and allelic expression were analyzed by cytogenetic karyotyping, oligonucleotide hybridization, Southern blotting, polymerase chain reaction, and DNA heteroduplex assays. Both chromosome 7 alterations and several cytogenetic changes involving the 7q21 locus are associated with the development of MDR in these sarcoma cells. Multistep-selected cells and their revertants contain three- to six-fold MDR1 gene amplification compared with that of the drug-sensitive parental cell line MES-SA and single-step doxorubicin-selected mutants. MDR1 gene amplification precedes the emergence of a mutant allele in cells that were coselected with doxorubicin and a cyclosporin inhibitor of P-glycoprotein (P-gp). Allele-specific oligonucleotide hybridization showed that the endogenous mutant allele was present as a single copy, with multiple copies of the normal allele. Reselection of revertant cells with doxorubicin in either the presence or the absence of the P-gp inhibitor resulted in exclusive reexpression of the mutant MDR1 allele, regardless of the presence of multiple wild-type MDR1 alleles. These data provide new insights into how multiple alleles are regulated in the amplicon of drug-resistant cancer cells and indicate that increased expression of an amplified gene can result from selective transcription of a single mutant allele of the gene.
- Published
- 2002
- Full Text
- View/download PDF
48. Semantics-empowered middleware implementation for home ecosystem gateway
- Author
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Dirk Pesch, Susan Rea, Navid Hassanzadeh, and Jasvinder Singh
- Subjects
Residential gateway ,business.industry ,Computer science ,computer.internet_protocol ,Distributed computing ,Service-oriented architecture ,Gateway (computer program) ,Ontology (information science) ,computer.software_genre ,Metadata ,Home automation ,Middleware (distributed applications) ,Message oriented middleware ,business ,computer - Abstract
To support rapid prototype development and integration of emerging smart home applications, we discuss a flexible and modular middleware framework implementation for home gateway system. The suggested implementation allows for uniting all heterogeneous networked resources with the gateway and publishes semantic enhancement of the cues being triggered by network resources to be processed in a meaningful way by applications responsible for autonomic management and control of home ecosystem. The fundamental building blocks of middleware framework includes (i) a communication middleware that aims for disguising the networked infrastructure heterogeneity, and for facilitating auto-commissioning or auto-registration of disparate resources (sensors, actuators, appliances, meters etc.) (ii) a semantic middleware built on unified ontological model for semantic uplifting of networked resource descriptions and measurements with metadata (i.e., resource capabilities, observed phenomena, spatial properties, etc.) with reasoning ability to deduce temporal situations in home environment at high-level abstraction. These inferred situations are subsequently exposed to an array of applications agents. The integrated middleware framework is implemented using OSGi (open system gateway infrastructure) based service-oriented architecture and its functionality has been validated for number of scenarios realized on real test bed made-up of heterogeneous networked resources from different manufactures.
- Published
- 2014
- Full Text
- View/download PDF
49. Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium
- Author
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Dingcheng Li, Kevin J. Peterson, Vinod C. Kaggal, Timothy A. Miller, Harold R. Solbrig, Dale Suesse, Lacey A. Hart, Cory M. Endle, Thomas A. Oniki, Hongfang Liu, Christopher G. Chute, Sunghwan Sohn, Dmitriy Dligach, Craig Stancl, Les Westberg, Kyle Marchant, Jyotishman Pathak, Cui Tao, Steven Bethard, Susan Rea, David Carrell, Calvin E. Beebe, Stephen Wu, Pei Chen, James J. Masanz, David P. Taylor, Martha Palmer, Guergana Savova, Stanley M. Huff, Peter J. Haug, Kent R. Bailey, and Ning Zhuo
- Subjects
Biomedical Research ,Standardization ,Computer science ,Health Informatics ,computer.software_genre ,Research and Applications ,Terminology ,Knowledge extraction ,Data Mining ,Electronic Health Records ,Humans ,Medical Informatics Applications ,Computer Security ,Natural Language Processing ,Information retrieval ,Unstructured data ,Data flow diagram ,Phenotype ,Vocabulary, Controlled ,Information model ,Informatics ,Data quality ,Data mining ,computer ,Algorithms ,Software - Abstract
Research objective To develop scalable informatics infrastructure for normalization of both structured and unstructured electronic health record (EHR) data into a unified, concept-based model for high-throughput phenotype extraction. Materials and methods Software tools and applications were developed to extract information from EHRs. Representative and convenience samples of both structured and unstructured data from two EHR systems—Mayo Clinic and Intermountain Healthcare—were used for development and validation. Extracted information was standardized and normalized to meaningful use (MU) conformant terminology and value set standards using Clinical Element Models (CEMs). These resources were used to demonstrate semi-automatic execution of MU clinical-quality measures modeled using the Quality Data Model (QDM) and an open-source rules engine. Results Using CEMs and open-source natural language processing and terminology services engines—namely, Apache clinical Text Analysis and Knowledge Extraction System (cTAKES) and Common Terminology Services (CTS2)—we developed a data-normalization platform that ensures data security, end-to-end connectivity, and reliable data flow within and across institutions. We demonstrated the applicability of this platform by executing a QDM-based MU quality measure that determines the percentage of patients between 18 and 75 years with diabetes whose most recent low-density lipoprotein cholesterol test result during the measurement year was
- Published
- 2013
50. Serviceware - A service based management approach for WSN cloud infrastructures
- Author
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Susan Rea, Muhammad Sohaib Aslam, and Dirk Pesch
- Subjects
System of systems ,business.industry ,Computer science ,End user ,Cloud computing ,Virtualization ,computer.software_genre ,Converged infrastructure ,Middleware ,ComputerSystemsOrganization_SPECIAL-PURPOSEANDAPPLICATION-BASEDSYSTEMS ,Smart environment ,business ,computer ,Wireless sensor network ,Computer network - Abstract
With the push for smart environments and the advent of concepts like Systems of Systems and Internet of Things, the need for underlying large-scale wireless sensor networks (WSNs) infrastructures is evident, however it is likely that no single private user could justify the costs to be incurred for a large-scale WSN deployment and the subsequent management and maintenance costs. In order to drive down costs and maximize the WSN utility a shared infrastructure approach makes large-scale multipurpose WSNs viable. The shared infrastructure paradigm where multiple applications and end users act on a single physical WSN infrastructure in parallel requires a fundamental change in the way WSN resources are managed are, specifically at the WSN device level. This paper draws on the cloud computing infrastructure as a service (IaaS) model and presents Serviceware - a middleware approach for infrastructure virtualization in next generation WSNs, where the WSN resources are exposed as services. Virtualization enables the slicing of the physical infrastructure into unique segments or virtual sensor networks that can be configured for individual end users according to their specific requirements.
- Published
- 2013
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