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CT scan of Isopsetta isolepis

CT scan of Lepidopsetta bilineata

Based on records dating from 1859 to 2021, we provide an overview of the marine animal diversity reported for Galiano Island, British Columbia, Canada. More than 650 taxa are represented by 20,000 species occurrence records in this curated dataset, which includes dive records documented through the Pacific Marine Life Surveys, museum voucher specimens, ecological data and crowd-sourced observations from the BC Cetacean Sightings Network and iNaturalist. We describe Galiano Island's marine animal diversity in relation to the Salish Sea's overall biodiversity and quantify the proportional contributions of different types of sampling effort to our current local knowledge. Overviews are provided for each taxonomic group in a format intended to be accessible to amateur naturalists interested in furthering research into the region's marine biodiversity. In summary, we find that the Pacific Marine Life Surveys, a regional community science diving initiative, account for 60% of novel records reported for Galiano Island. Voucher specimens account for 19% and crowd-sourced biodiversity data 18% of novel records, respectively, with the remaining 3% of reports coming from other sources. These findings shed light on the complementarity of different types of sampling effort and demonstrate the potential for community science to contribute to the global biodiversity research community. We present a biodiversity informatics framework that is designed to enable these practices by supporting collaboration among researchers and communities in the collection, curation and dissemination of biodiversity data.

Traditional taxonomic analysis of zooplankton is time consuming, expensive, and unable to resolve the true species diversity of a community due to a lack of diagnostic morphological characters for many taxa. This is especially true for early life stages, undescribed, and cryptic species. This limitation has led to a dramatic under-estimation of the incredible diversity of life that inhabits the ocean, hindering our understanding of the environmental conditions that structure communities. Multi-gene metabarcode high-throughput sequencing (HTS) analyses entailing field sampling and bioinformatics offer new means to rapidly and accurately characterize the species identities, diversity, and composition of entire communities. We use multiple diagnostic Illumina MiSeq HTS metabarcode assays (for mitochondrial COI, 16SRNA, and 12SRNA gene regions) and a custom bioinformatics pipeline to analyze communities of invertebrates and fishes from zooplankton net tows collected concurrently with environmental chemistry data across Puget Sound in the southern Salish Sea. We compare results among sites for spring and autumn seasons, as a prelude to multi-year analyses. Findings show considerable divergence in species composition and diversity among sites and season, reflecting differences in salinity, pH, and proximity to the ocean. This approach has great potential for wide-spread use in monitoring programs to assess the diversity of marine plankton communities in conjunction with changing conditions, including ocean acidification, hypoxia, and global temperature rise.

A voluntary commercial vessel slowdown trial was conducted through 16 nm of shipping lanes overlapping critical habitat of at-risk southern resident killer whales (SRKW) in the Salish Sea. From August 7 to October 6, 2017, the trial requested piloted vessels to slow to 11 knots speed-through-water. Analysis of AIS vessel tracking data showed that 350 of 951 (37%) piloted transits achieved this target speed, 421 of 951 (44%) transits achieved speeds within one knot of this target (i.e., ≤12 knots), and 55% achieved speeds ≤ 13 knots. Slowdown results were compared to ‘Baseline’ noise of the same region, matched across lunar months. A local hydrophone listening station in Lime Kiln State Park, 2.3 km from the shipping lane, recorded 1.2 dB reductions in median broadband noise (10–100,000 Hz, rms) compared to the Baseline period, despite longer transit. The median reduction was 2.5 dB when filtering only for periods when commercial vessels were within 6 km radius of Lime Kiln. The reductions were highest in the 1st decade band (-3.1 dB, 10–100 Hz) and lowest in the 4th decade band (-0.3 dB reduction, 10–100 kHz). A regional vessel noise model predicted noise for a range of traffic volume and vessel speed scenarios for a 1133 km2 ‘Slowdown region’ containing the 16 nm of shipping lanes. A temporally and spatially explicit simulation model evaluated the changes in traffic volume and speed on SRKW in their foraging habitat within this Slowdown region. The model tracked the number and magnitude of noise-exposure events that impacted each of 78 (simulated) SRKW across different traffic scenarios. These disturbance metrics were simplified to a cumulative effect termed ‘potential lost foraging time’ that corresponded to the sum of disturbance events described by assumptions of time that whales could not forage due to noise disturbance. The model predicted that the voluntary Slowdown trial achieved 22% reduction in ‘potential lost foraging time’ for SRKW, with 40% reductions under 100% 11-knot participation. Slower vessel speeds reduced underwater noise in the Slowdown area despite longer passage times and therefore suggest this is an effective way to benefit SRKW habitat function in the vicinity of shipping lanes.

While ocean acidification was first investigated as a global phenomenon, coastal acidification has received significant attention in recent years, as its impacts have been felt by different socio-economic sectors (e.g., high mortality of shellfish larvae in aquaculture farms). As a region that connects land and ocean, the Salish Sea (consisting of Puget Sound and the Straits of Juan de Fuca and Georgia) receives inputs from many different sources (rivers, wastewater treatment plants, industrial waste treatment facilities, etc.), making these coastal waters vulnerable to acidification. Moreover, the lowering of pH in the Northeast Pacific Ocean also affects the Salish Sea, as more acidic waters get transported into the bottom waters of the straits and estuaries. Here, we use a numerical ocean model of the Salish Sea to improve our understanding of the carbonate system in Puget Sound; in particular, we studied the sensitivity of carbonate variables (e.g., dissolved inorganic carbon, total alkalinity, pH, saturation state of aragonite) to ocean and freshwater inputs. The model is an updated version of our FVCOM-ICM framework, with new carbonate-system and sediment modules. Sensitivity experiments altering concentrations at the open boundaries and freshwater sources indicate that not only ocean conditions entering the Strait of Juan de Fuca, but also the dilution of carbonate variables by freshwater sources, are key drivers of the carbonate system in Puget Sound.

Circulation in typical fjords is characterized by a shallow brackish layer at the surface over a deep long and narrow saltwater column. This surface layer is responsible for the outflow of water from the fjord and is important for flushing of the basin and water quality maintenance. The vertical structure of circulation and transport is known to be easily disrupted, and we postulate that the stability of fjordal circulation may also be vulnerable to impacts from anthropogenic alterations, such as floating structures, which could constrict the mixing and transport in the upper layers of the water column. First, using simplified fjord geometry and a three-dimensional finite volume coastal ocean model (FVCOM), a baseline examination of tidally averaged current profiles in basins with and without sills is presented. The response, varying from a partially mixed estuary regime to classical fjord conditions matches many fjord-like basins such as those in Puget Sound, Washington. The effect of surface obstruction on tidally averaged currents and residence times was then examined by incorporation of a narrow block in the surface layer of the model across the width of the simplified fjord channel such that normal velocity in the horizontal direction was forced to zero. This block approximated the presence of a floating bridge and was further tested using the geometry of Hood Canal, a fjordal sub-basin with a sill in Puget Sound. The results show that tidally averaged mean outflow under the influence of such a constraint at the water surface could be reduced significantly. In the case of Hood Canal, preliminary results indicate that the presence of the floating bridge might have increased the residence times in the basin by 8–13%, which could be an important factor affecting water quality.

Global expansion of oxygen-deficient (hypoxic) waters will have detrimental effects on marine life in the Northeast Pacific Ocean (NEP) where some of the largest proportional losses in aerobic habitat are predicted to occur. However, few in situ studies have accounted for the high environmental variability in this region while including natural community-assembly dynamics. Here, we present results from a 14-month deployment of a benthic camera platform tethered to the VENUS cabled observatory in the seasonally hypoxic Saanich Inlet. Our time series continuously recorded natural cycles of deoxygenation and reoxygenation that allowed us to test whether a community from the NEP showed hysteresis in its recovery compared to hypoxia-induced decline, and to address the processes driving temporal beta diversity under variable states of hypoxia. Using high-frequency ecological time series, we reveal (i) differences in the response and recovery of the epibenthic community are rate-limited by recovery of the sessile species assemblage; (ii) both environmental and biological processes influence community assembly patterns at multiple timescales; and (iii) interspecific processes can drive temporal beta diversity in seasonal hypoxia. Ultimately, our results illustrate how different timescale-dependent drivers can influence the response and recovery of a marine habitat under increasing stress from environmental change.

Like other coastal zones around the world, the inland sea ecosystem of Washington (USA) and British Columbia (Canada), an area known as the Salish Sea, is changing under pressure from a growing human population, conversion of native forest and shoreline habitat to urban development, toxic contamination of sediments and species, and overharvest of resources. While billions of dollars have been spent trying to restore other coastal ecosystems around the world, there still is no successful model for restoring estuarine or marine ecosystems like the Salish Sea. Despite the lack of a guiding model, major ecological principles do exist that should be applied as people work to design the Salish Sea and other large marine ecosystems for the future. We suggest that the following 10 ecological principles serve as a foundation for educating the public and for designing a healthy Salish Sea and other coastal ecosystems for future generations: (1) Think ecosystem: political boundaries are arbitrary; (2) Account for ecosystem connectivity; (3) Understand the food web; (4) Avoid fragmentation; (5) Respect ecosystem integrity; (6) Support nature’s resilience; (7) Value nature: it’s money in your pocket; (8) Watch wildlife health; (9) Plan for extremes; and (10) Share the knowledge.