1,012 results on '"Rosenheim BE"'
Search Results
2. A Spatial Model Comparing Above- and Belowground Blue Carbon Stocks in Southwest Florida Mangroves and Salt Marshes
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Kara R. Radabaugh, Ryan P. Moyer, Amanda R. Chappel, Joshua L. Breithaupt, David Lagomasino, Emma E. Dontis, Christine E. Russo, Brad E. Rosenheim, Lisa G. Chambers, Elitsa I. Peneva-Reed, and Joseph M. Smoak
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Ecology ,Aquatic Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2023
3. Comparison of home ambulatory type 2 polysomnography with a portable monitoring device and in-laboratory type 1 polysomnography for the diagnosis of obstructive sleep apnea in children
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Anne Marie O'Donnell, Jennifer Maul, Andrew Wilson, Stephen M. Stick, Ellen Rosenheim, and Adelaide Withers
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Pulmonary and Respiratory Medicine ,Sleep Apnea, Obstructive ,medicine.medical_specialty ,Adolescent ,medicine.diagnostic_test ,business.industry ,Polysomnography ,Gold standard ,Monitoring, Ambulatory ,medicine.disease ,Scientific Investigations ,respiratory tract diseases ,Obstructive sleep apnea ,Neurology ,Child, Preschool ,Ambulatory ,Physical therapy ,Humans ,Medicine ,Neurology (clinical) ,Child ,Laboratories ,Sleep ,business - Abstract
STUDY OBJECTIVES: To compare type 2 polysomnography (T2PSG) to the gold standard type 1 in-laboratory polysomnography (T1PSG) for diagnosing obstructive sleep apnea (OSA) in children; validate home T2PSG in children with suspected OSA. METHODS: Eighty-one participants (ages 6–18) with suspected OSA had simultaneous T1PSG and T2PSG in the sleep laboratory, 47 participants (ages 5–16) had T1PSG in the sleep laboratory and T2PSG performed at home. Sleep scientists staged and scored polysomnography data, and pediatric sleep physicians assigned a diagnosis of normal or OSA. Participant demographics, polysomnography variables, and diagnoses were compared using chi-square and Fisher’s exact tests for nominal variables, t test for continuous variables and Cohen’s kappa to assess concordance. RESULTS: Acceptable recordings were obtained for every home T2PSG. When T1PSG and T2PSG were simultaneous, correlation between the number of arousals, respiratory disturbance index, and sleep stages was excellent. T2PSG at home demonstrated less stage 2 sleep, more rapid eye movement sleep, and higher sleep efficiency. Comparison of home T2PSG to T1PSG for diagnosing OSA showed a false-positive rate of 6.6% and false-negative rate of 3% for those performed at home. CONCLUSIONS: T2PSG in the home is feasible with excellent concordance with T1PSG for the purposes of diagnosing OSA in children aged 5–18 years. Home T2PSG may be more representative of a “normal” night for children and could benefit those suspected of having OSA by reducing waiting times for laboratory PSG, improving access to PSG and possibly reducing costs of investigating and treating OSA. CITATION: Withers A, Maul J, Rosenheim E, O’Donnell A, Wilson A, Stick S. Comparison of home ambulatory type 2 polysomnography with a portable monitoring device and in-laboratory type 1 polysomnography for the diagnosis of obstructive sleep apnea in children. J Clin Sleep Med. 2022;18(2):393–402.
- Published
- 2022
4. Biogeochemical and historical drivers of microbial community composition and structure in sediments from Mercer Subglacial Lake, West Antarctica
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Christina Davis and Brad Rosenheim
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General Medicine - Abstract
Ice streams that flow into Ross Ice Shelf are underlain by water-saturated sediments, a dynamic hydrological system, and subglacial lakes that intermittently discharge water downstream across grounding zones of West Antarctic Ice Sheet (WAIS). A 2.06 m composite sediment profile was recently recovered from Mercer Subglacial Lake, a 15 m deep water cavity beneath a 1087 m thick portion of the Mercer Ice Stream. We examined microbial abundances, used 16S rRNA gene amplicon sequencing to assess community structures, and characterized extracellular polymeric substances (EPS) associated with distinct lithologic units in the sediments. Bacterial and archaeal communities in the surficial sediments are more abundant and diverse, with significantly different compositions from those found deeper in the sediment column. The most abundant taxa are related to chemolithoautotrophs capable of oxidizing reduced nitrogen, sulfur, and iron compounds with oxygen, nitrate, or iron. Concentrations of dissolved methane and total organic carbon together with water content in the sediments are the strongest predictors of taxon and community composition. δ¹³C values for EPS (−25 to −30‰) are consistent with the primary source of carbon for biosynthesis originating from legacy marine organic matter. Comparison of communities to those in lake sediments under an adjacent ice stream (Whillans Subglacial Lake) and near its grounding zone provide seminal evidence for a subglacial metacommunity that is biogeochemically and evolutionarily linked through ice sheet dynamics and the transport of microbes, water, and sediments beneath WAIS.
- Published
- 2023
5. Comparing the Fruit Rind Scarring That Three Early-Season Pests Cause in Mandarin Species and Sweet Orange
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Bodil N. Cass, Hanna M. Kahl, Elizabeth E. Grafton-Cardwell, and Jay A. Rosenheim
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- 2023
6. Know Before You Go: A Community-Derived Approach to Planning for and Preventing Sexual Harassment at Oceanographic Field Sites
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Abby Ackerman, Kristen Yarincik, Stephanie Murphy, Ivona Cetinić, Allison Fundis, Allison Miller, Emily Shroyer, Aly Busse, Qu'Derrick Covington, Annette DeSilva, Alison Haupt, Leah Johnson, Craig Lee, Laura Lorenzoni, Brandi Murphy, Jennifer Ramarui, Brad Rosenheim, and Deborah Steinberg
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Oceanography - Abstract
Sexual harassment is a pervasive problem on oceanographic research vessels and while conducting fieldwork in general. A variety of factors contribute to inadequate protection against sexual harassment, such as poor training in prevention, support, and response; remoteness of field sites; academic hierarchies that reinforce uneven power dynamics that extend to fieldwork; and multi-institutional teams with distinct policies or reporting structures that can lead to confusion in reporting and responding to incidents in the field. In compromising individuals’ physical and mental health, sexual harassment can negatively affect research expeditions. For example, harassed individuals may decide to refrain from working on complicated team-based tasks, which can be a safety issue. A broader concern is that sexual harassment deters talented people from pursing or maintaining employment in ocean science. Harassment must be treated with the same gravity as research misconduct and safety policy infringements. When planning a research expedition, science team leaders are responsible for the safety of their team and other colleagues aboard and would benefit from resources aimed at helping team leadership create a plan to ensure safety and inclusivity. To address this resource gap, 18 participants in the Workshop to Promote Field Safety in Ocean Sciences, convened by the Consortium for Ocean Leadership and held May 17–18, 2022, in Washington, DC, developed a checklist for use by scientific leaders and others to assist in planning for participant safety and to prevent harassment the field. The checklist specifies the timing of, and who is responsible for, specific actions that should be taken to improve safety while conducting fieldwork, whether on a research vessel or on land. It also provides additional resources and suggestions for leaders on how to amend the checklist to address their specific fieldwork situations.
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- 2023
7. Large Clones of Pre-Existing T Cells Drive Early Immunity Against SARS-COV-2 and LCMV Infection
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Martina Milighetti, Yanchun Peng, Cedric Tan, Michal Mark, Gayathri Nageswaran, Suzanne Byrne, Tahel Ronel, Tom Peacock, Andreas Mayer, Aneesh Chandran, Joshua Rosenheim, Matthew V.X. Whelan, Xuan Yao, Guihai Liu, Suet Ling Felce, Tao Dong, Alexander J. Mentzer, Julian Knight, François Balloux, Erez Greenstein, Shlomit Reich-Zeliger, Corinna Pade, Joseph Gibbons, Amanda Semper, Tim Brooks, Ashley Otter, Daniel M. Altmann, Rosemary J. Boyton, Mala K. Maini, Aine McKnight, Charlotte Manisty, Thomas A. Treibel, James C. Moon, COVIDsortium Investigators, Mahdad Noursadeghi, and Benny Chain
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- 2023
8. Genomic investigations of unexplained acute hepatitis in children
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Morfopoulou, Sofia, Buddle, Sarah, Montaguth, Oscar Enrique Torres, Atkinson, Laura, Guerra-Assunção, José Afonso, Marjaneh, Mahdi Moradi, Chiozzi, Riccardo Zenezini, Storey, Nathaniel, Campos, Luis, Hutchinson, J Ciaran, Counsell, John R, Pollara, Gabriele, Roy, Sunando, Venturini, Cristina, Antinao Diaz, Juan F, Siam, Ala'a, Tappouni, Luke J, Asgarian, Zeinab, Ng, Joanne, Hanlon, Killian S, Lennon, Alexander, McArdle, Andrew, Czap, Agata, Rosenheim, Joshua, Andrade, Catarina, Anderson, Glenn, Lee, Jack C D, Williams, Rachel, Williams, Charlotte A, Tutill, Helena, et al, and University of Zurich
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610 Medicine & health ,10027 Clinic for Neonatology - Published
- 2023
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9. Reply to Marini et al.: Insect spill-over is a double-edged sword in agriculture
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Jay A. Rosenheim, Emma Cluff, Mia K. Lippey, Bodil N. Cass, Daniel Paredes, Soroush Parsa, Daniel S. Karp, and Rebecca Chaplin-Kramer
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Multidisciplinary ,Agriculture - Published
- 2022
10. Supplementary material to 'Deep-sea stylasterid δ18O and δ13C maps inform sampling scheme for paleotemperature reconstructions'
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Theresa M. King and Brad E. Rosenheim
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- 2022
11. Assessing changes in food pantry access after extreme events
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John P. Casellas Connors, Mastura Safayet, Nathanael Rosenheim, and Maria Watson
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Agronomy and Crop Science - Abstract
Food pantries play a growing role in supporting households facing or at risk of food insecurity in the United States. They also support emergency response and recovery following disasters and extreme weather events. Although food pantries are often placed in close proximity to communities with the highest rates of poverty and risk of food insecurity, access to these facilities can be disrupted during and after extreme events. Decreased access to food pantries following disasters can be particularly problematic as the need for these services is also likely to grow after such events. Despite the vast body of research on food retail access and food environments, relatively little research has utilized spatial analysis to understand food pantry access, particularly after extreme events. Using Geographic Information Systems (GIS), we characterize changes in access to food pantries following flooding events in Harris County, Texas-a highly populated and flood prone region with high levels of food insecurity and poverty. Specifically, our study models disruptions in road networks due to flooding and assesses the impacts of these disruptions on proximity to food pantries. The results reveal that much of Harris County sees only small increases in travel distance to food pantries due to extreme flooding, but some areas may be unable to access food pantries at all. This research highlights the potential and some of the limits of private food assistance networks to support emergency response efforts.
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- 2022
12. Increasing crop field size does not consistently exacerbate insect pest problems
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Jay A. Rosenheim, Emma Cluff, Mia K. Lippey, Bodil N. Cass, Daniel Paredes, Soroush Parsa, Daniel S. Karp, and Rebecca Chaplin-Kramer
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Crops, Agricultural ,agroecology ,Agricultural ,Insecta ,Multidisciplinary ,Crop Protection ,Crops ,crop yield ,Biological ,Insect Control ,pest density ,field size ,Animals ,Pest Control ,pesticide use ,Pest Control, Biological ,Ecosystem - Abstract
Increasing diversity on farms can enhance many key ecosystem services to and from agriculture, and natural control of arthropod pests is often presumed to be among them. The expectation that increasing the size of monocultural crop plantings exacerbates the impact of pests is common throughout the agroecological literature. However, the theoretical basis for this expectation is uncertain; mechanistic mathematical models suggest instead that increasing field size can have positive, negative, neutral, or even nonlinear effects on arthropod pest densities. Here, we report a broad survey of crop field-size effects: across 14 pest species, 5 crops, and 20,000 field years of observations, we quantify the impact of field size on pest densities, pesticide applications, and crop yield. We find no evidence that larger fields cause consistently worse pest impacts. The most common outcome (9 of 14 species) was for pest severity to be independent of field size; larger fields resulted in less severe pest problems for four species, and only one species exhibited the expected trend of larger fields worsening pest severity. Importantly, pest responses to field size strongly correlated with their responses to the fraction of the surrounding landscape planted to the focal crop, suggesting that shared ecological processes produce parallel responses to crop simplification across spatial scales. We conclude that the idea that larger field sizes consistently disrupt natural pest control services is without foundation in either the theoretical or empirical record.
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- 2022
13. A FRAMEWORK FOR TRANSDISCIPLINARY RADIOCARBON RESEARCH: USE OF NATURAL-LEVEL AND ELEVATED-LEVEL 14C IN ANTARCTIC FIELD RESEARCH
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Mark L. Roberts, Alan R. Gagnon, Trista J. Vick-Majors, Kathy Kasic, Wei Li, Billy Collins, Mark D. Kurz, Brad E. Rosenheim, Ryan A Venturelli, and John C. Priscu
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Protocol (science) ,Archeology ,Research use ,Research groups ,Elevated level ,business.industry ,Environmental resource management ,Isotopic tracer ,Natural (archaeology) ,law.invention ,law ,Field research ,General Earth and Planetary Sciences ,Environmental science ,Radiocarbon dating ,business - Abstract
Radiocarbon (14C) is an isotopic tracer used to address a wide range of scientific research questions. However, contamination by elevated levels of 14C is deleterious to natural-level laboratory workspaces and accelerator mass spectrometer facilities designed to precisely measure small amounts of 14C. The risk of contaminating materials and facilities intended for natural-level 14C with elevated-level 14C-labeled materials has dictated near complete separation of research groups practicing profoundly different measurements. Such separation can hinder transdisciplinary research initiatives, especially in remote and isolated field locations where both natural-level and elevated-level radiocarbon applications may be useful. This paper outlines the successful collaboration between researchers making natural-level 14C measurements and researchers using 14C-labeled materials during a subglacial drilling project in West Antarctica (SALSA 2018–2019). Our strict operating protocol allowed us to successfully carry out 14C labeling experiments within close quarters at our remote field camp without contaminating samples of sediment and water intended for natural level 14C measurements. Here we present our collaborative protocol for maintaining natural level 14C cleanliness as a framework for future transdisciplinary radiocarbon collaborations.
- Published
- 2021
14. Deaggregation of multi-hazard damages, losses, risks, and connectivity: an application to the joint seismic-tsunami hazard at Seaside, Oregon
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Nathanael Rosenheim, Sabarethinam Kameshwar, Daniel T. Cox, and Dylan R. Sanderson
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Atmospheric Science ,education.field_of_study ,Community resilience ,Geospatial analysis ,Computer science ,business.industry ,Population ,Environmental resource management ,computer.software_genre ,Hazard ,Natural hazard ,Earth and Planetary Sciences (miscellaneous) ,Damages ,Water supply network ,Resilience (network) ,education ,business ,computer ,Water Science and Technology - Abstract
This paper presents a methodology to deaggregate the results of a multi-hazard damage analysis by extending the traditional multi-hazard damage analysis to consider both population characteristics and independent hazards. The methodology is applied to the joint seismic-tsunami hazard at Seaside, Oregon, considering four infrastructure systems: (1) buildings, (2) transportation network, (3) electric power network and (4) water supply network. Damages to all infrastructure systems are evaluated, and the networked infrastructures are used to inform parcel connectivity to critical facilities. US Census data and a probabilistic housing unit allocation method are implemented to assign detailed household demographic characteristics at the parcel level. Six dimensions of deaggregation are introduced: (1) spatial, (2) hazard type, (3) hazard intensity, (4) infrastructure system, (5) infrastructure component, and (6) housing unit characteristics. The damages, economic losses and risks, and connectivity to critical facilities are deaggregated across these six dimensions. The results show that deaggregated economic loss and risk plots can allow community resilience planners the ability to isolate high-risk events, as well as provide insights into the underlying driving forces. Geospatial representation of the results allows for the identification of both vulnerable buildings and areas within a community and is highlighted by the spatial pattern of parcel disconnection from critical facilities. The incorporation of population characteristics provides an understanding of how hazards disproportionately impact population subgroups and can aide in equitable resilience planning.
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- 2021
15. Characterizing Herbivory by European Earwigs (Dermaptera: Forficulidae) on Navel Orange Fruit with Comparison to Forktailed Bush Katydid (Orthoptera: Tettigoniidae) Herbivory
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Xinqiang Xi, Hanna M Kahl, Emma Cluff, Bodil N. Cass, Tobias G Mueller, Elizabeth E. Grafton-Cardwell, and Jay A. Rosenheim
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0106 biological sciences ,Citrus ,Orthoptera ,Tettigoniidae ,Forficulidae ,01 natural sciences ,Forficula auricularia ,Animals ,Herbivory ,Nymph ,Ecology ,biology ,05 social sciences ,050301 education ,General Medicine ,biology.organism_classification ,010602 entomology ,Horticulture ,Rutaceae ,Fruit ,Insect Science ,Earwig ,0503 education ,Citrus × sinensis ,Citrus sinensis - Abstract
In establishing Integrated Pest Management (IPM) plans for understudied pests, it is crucial to understand the nature of their herbivory and resulting damage. European earwig (Forficula auricularia L.; Dermaptera: Forficulidae) densities are increasing in citrus orchards in Central California. Field observations suggest that earwigs feed on young, developing citrus fruit, but this hypothesis had not been examined with formal experimentation. Forktailed bush katydid nymphs (Scudderia furcata Brunner von Wattenwyl; Orthoptera: Tettigoniidae) are well-known citrus herbivores that feed on young citrus fruit, and it is possible that earwig damage may be misdiagnosed as katydid damage. Here we report findings from two field experiments in navel oranges (Citrus sinensis (L.) Osbeck; Sapindales: Rutaceae) that together tested: (1) whether earwigs damage young citrus fruit; (2) whether the amount of damage earwigs generate differs across developmental stage or sex of adult earwigs; (3) the window of time during which fruit are most sensitive to earwig damage; (4) whether damaged fruit are retained to harvest; and (5) the resulting damage morphology caused by earwigs relative to katydids. Earwigs, particularly nymphs, chewed deep holes in young citrus fruit from 0 to 3 wk after petal fall. Fruit damaged by earwigs were retained and exhibited scars at harvest. The morphology and distribution of scars on mature fruit only subtly differed between earwigs and katydids. This study establishes that earwigs can be direct pests in mature navel orange trees by generating scars on fruit and likely contribute to fruit quality downgrades.
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- 2021
16. Scientific access into Mercer Subglacial Lake: scientific objectives, drilling operations and initial observations
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Jim McManis, Al Gagnon, Amy Leventer, Timothy Campbell, John Winans, Graham Roberts, John E. Dore, Molly O. Patterson, Brent C. Christner, Ryan A Venturelli, John C. Priscu, Edward Krula, Helen A. Fricker, Kathy Kasic, Dar Gibson, Dennis Duling, J. D. Barker, Ok-Sun Kim, Wei Li, Robert Zook, Matthew R. Siegfried, Chloe Gustafson, Justin Burnett, Christopher B. Gardner, Billy Collins, Brad E. Rosenheim, David M. Harwood, C. Davis, Cooper Elsworth, Mark Bowling, Jonas Kalin, Mark L. Skidmore, Trista J. Vick-Majors, Anatoly Mironov, Alex Michaud, Martyn Tranter, and W. Berry Lyons
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010504 meteorology & atmospheric sciences ,Earth science ,Subglacial lake ,Drilling ,010502 geochemistry & geophysics ,01 natural sciences ,Geology ,0105 earth and related environmental sciences ,Earth-Surface Processes - Abstract
The Subglacial Antarctic Lakes Scientific Access (SALSA) Project accessed Mercer Subglacial Lake using environmentally clean hot-water drilling to examine interactions among ice, water, sediment, rock, microbes and carbon reservoirs within the lake water column and underlying sediments. A ~0.4 m diameter borehole was melted through 1087 m of ice and maintained over ~10 days, allowing observation of ice properties and collection of water and sediment with various tools. Over this period, SALSA collected: 60 L of lake water and 10 L of deep borehole water; microbes >0.2 μm in diameter from in situ filtration of ~100 L of lake water; 10 multicores 0.32–0.49 m long; 1.0 and 1.76 m long gravity cores; three conductivity–temperature–depth profiles of borehole and lake water; five discrete depth current meter measurements in the lake and images of ice, the lake water–ice interface and lake sediments. Temperature and conductivity data showed the hydrodynamic character of water mixing between the borehole and lake after entry. Models simulating melting of the ~6 m thick basal accreted ice layer imply that debris fall-out through the ~15 m water column to the lake sediments from borehole melting had little effect on the stratigraphy of surficial sediment cores.
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- 2021
17. Pathways to the density‐dependent expression of cannibalism, and consequences for regulated population dynamics
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Jay Rosenheim and Sebastian Schreiber
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Food Chain ,Predatory Behavior ,Population Dynamics ,Animals ,Cannibalism ,Models, Biological ,Ecology, Evolution, Behavior and Systematics - Abstract
Cannibalism, once viewed as a rare or aberrant behavior, is now recognized to be widespread and to contribute broadly to the self-regulation of many populations. Cannibalism can produce endogenous negative feedback on population growth because it is expressed as a conditional behavior, responding to the deteriorating ecological conditions that flow, directly or indirectly, from increasing densities of conspecifics. Thus, cannibalism emerges as a strongly density-dependent source of mortality. In this synthesis, we review recent research that has revealed a rich diversity of pathways through which rising density elicits increased cannibalism, including both factors that (a) elevate the rate of dangerous encounters between conspecifics and (b) enhance the likelihood that such encounters will lead to successful cannibalistic attacks. These pathways include both features of the autecology of cannibal populations and features of interactions with other species, including food resources and pathogens. Using mathematical models, we explore the consequences of including density-dependent cannibal attack rates on population dynamics. The conditional expression of cannibalism generally enhances stability and population regulation in single-species models but also may increase opportunities for alternative states and prey population escape from control by cannibalistic predators.
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- 2022
18. Immune boosting by B.1.1.529
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Catherine J, Reynolds, Corinna, Pade, Joseph M, Gibbons, Ashley D, Otter, Kai-Min, Lin, Diana, Muñoz Sandoval, Franziska P, Pieper, David K, Butler, Siyi, Liu, George, Joy, Nasim, Forooghi, Thomas A, Treibel, Charlotte, Manisty, James C, Moon, Amanda, Semper, Tim, Brooks, Áine, McKnight, Daniel M, Altmann, Rosemary J, Boyton, Hakam, Abbass, Aderonke, Abiodun, Mashael, Alfarih, Zoe, Alldis, Oliver E, Amin, Mervyn, Andiapen, Jessica, Artico, João B, Augusto, Georgina L, Baca, Sasha N L, Bailey, Anish N, Bhuva, Alex, Boulter, Ruth, Bowles, Olivia V, Bracken, Ben, O'Brien, Natalie, Bullock, Gabriella, Captur, Olivia, Carr, Nicola, Champion, Carmen, Chan, Aneesh, Chandran, Tom, Coleman, Jorge, Couto de Sousa, Xose, Couto-Parada, Eleanor, Cross, Teresa, Cutino-Moguel, Silvia, D'Arcangelo, Rhodri H, Davies, Brooke, Douglas, Cecilia, Di Genova, Keenan, Dieobi-Anene, Mariana O, Diniz, Anaya, Ellis, Karen, Feehan, Malcolm, Finlay, Marianna, Fontana, Sasha, Francis, David, Gillespie, Derek, Gilroy, Matt, Hamblin, Gabrielle, Harker, Georgia, Hemingway, Jacqueline, Hewson, Wendy, Heywood, Lauren M, Hickling, Bethany, Hicks, Aroon D, Hingorani, Lee, Howes, Ivie, Itua, Victor, Jardim, Wing-Yiu Jason, Lee, Melaniepetra, Jensen, Jessica, Jones, Meleri, Jones, Vikas, Kapil, Caoimhe, Kelly, Hibba, Kurdi, Jonathan, Lambourne, Aaron, Lloyd, Sarah, Louth, Mala K, Maini, Vineela, Mandadapu, Katia, Menacho, Celina, Mfuko, Kevin, Mills, Sebastian, Millward, Oliver, Mitchelmore, Christopher, Moon, James, Moon, Sam M, Murray, Mahdad, Noursadeghi, Ashley, Otter, Susana, Palma, Ruth, Parker, Kush, Patel, Mihaela, Pawarova, Steffen E, Petersen, Brian, Piniera, Lisa, Rannigan, Alicja, Rapala, Amy, Richards, Matthew, Robathan, Joshua, Rosenheim, Cathy, Rowe, Matthew, Royds, Jane, Sackville West, Genine, Sambile, Nathalie M, Schmidt, Hannah, Selman, Andreas, Seraphim, Mihaela, Simion, Angelique, Smit, Michelle, Sugimoto, Leo, Swadling, Stephen, Taylor, Nigel, Temperton, Stephen, Thomas, George D, Thornton, Art, Tucker, Ann, Varghese, Jessry, Veerapen, Mohit, Vijayakumar, Tim, Warner, Sophie, Welch, Hannah, White, Theresa, Wodehouse, Lucinda, Wynne, Dan, Zahedi, and Benjamin, Chain
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B-Lymphocytes ,Mice ,SARS-CoV-2 ,T-Lymphocytes ,Spike Glycoprotein, Coronavirus ,Immunization, Secondary ,Animals ,COVID-19 ,Humans ,Cross Reactions ,Antibodies, Viral ,Antibodies, Neutralizing ,BNT162 Vaccine - Abstract
The Omicron, or Pango lineage B.1.1.529, variant of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) carries multiple spike mutations with high transmissibility and partial neutralizing antibody (nAb) escape. Vaccinated individuals show protection against severe disease, often attributed to primed cellular immunity. We investigated T and B cell immunity against B.1.1.529 in triple BioNTech BNT162b2 messenger RNA-vaccinated health care workers (HCWs) with different SARS-CoV-2 infection histories. B and T cell immunity against previous variants of concern was enhanced in triple-vaccinated individuals, but the magnitude of T and B cell responses against B.1.1.529 spike protein was reduced. Immune imprinting by infection with the earlier B.1.1.7 (Alpha) variant resulted in less durable binding antibody against B.1.1.529. Previously infection-naïve HCWs who became infected during the B.1.1.529 wave showed enhanced immunity against earlier variants but reduced nAb potency and T cell responses against B.1.1.529 itself. Previous Wuhan Hu-1 infection abrogated T cell recognition and any enhanced cross-reactive neutralizing immunity on infection with B.1.1.529.
- Published
- 2022
19. A double-edged sword: parental care increases risk of offspring infection by a maternally vectored parasite
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Jay Rosenheim and Rebecca Jean Millena
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Insecta ,Wasps ,Animals ,General Agricultural and Biological Sciences ,Agricultural and Biological Sciences (miscellaneous) ,Nesting Behavior - Abstract
Parental care can protect offspring from predators but can also create opportunities for parents to vector parasites to their offspring. We hypothesized that the risk of infection by maternally vectored parasites would increase with the frequency of mother–offspring contact. Ammophila spp. wasps (Hymenoptera: Sphecidae) build nests in which they rear a single offspring. Ammophila species exhibit varied offspring provisioning behaviours: some species enter the nest once to provision a single, large caterpillar, whereas others enter the nest repeatedly to provision with many smaller caterpillars. We hypothesized that each nest visit increases the risk of offspring parasitism by Paraxenos lugubris (Strepsiptera: Xenidae), whose infectious stages ride on the mother wasp (phoresy) to reach the vulnerable Ammophila offspring. We quantified parasitism risk by external examination of museum-curated Ammophila specimens—the anterior portion of P. lugubris protrudes between the adult host's abdominal sclerites and reflects infection during the larval stage. As predicted, Ammophila species that receive larger numbers of provisions incur greater risks of parasitism, with nest provisioning behaviour explaining ca 90% of the interspecific variation in mean parasitism. These findings demonstrate that parental care can augment, rather than reduce, the risk of parasite transmission to offspring.
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- 2022
20. A double-edged sword: parental care increases risk of offspring infection by a maternally vectored parasite
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Millena, Rebecca Jean A and Rosenheim, Jay A
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Evolutionary Biology ,Insecta ,Prevention ,Wasps ,Paraxenos lugubris ,parental care ,Biological Sciences ,Nesting Behavior ,Ammophila ,Vaccine Related ,Infectious Diseases ,Emerging Infectious Diseases ,Good Health and Well Being ,Animals ,2.2 Factors relating to the physical environment ,vertical transmission ,Strepsiptera ,Aetiology ,provisioning ,Infection - Abstract
Parental care can protect offspring from predators but can also create opportunities for parents to vector parasites to their offspring. We hypothesized that the risk of infection by maternally vectored parasites would increase with the frequency of mother-offspring contact. Ammophila spp. wasps (Hymenoptera: Sphecidae) build nests in which they rear a single offspring. Ammophila species exhibit varied offspring provisioning behaviours: some species enter the nest once to provision a single, large caterpillar, whereas others enter the nest repeatedly to provision with many smaller caterpillars. We hypothesized that each nest visit increases the risk of offspring parasitism by Paraxenos lugubris (Strepsiptera: Xenidae), whose infectious stages ride on the mother wasp (phoresy) to reach the vulnerable Ammophila offspring. We quantified parasitism risk by external examination of museum-curated Ammophila specimens-the anterior portion of P. lugubris protrudes between the adult host's abdominal sclerites and reflects infection during the larval stage. As predicted, Ammophila species that receive larger numbers of provisions incur greater risks of parasitism, with nest provisioning behaviour explaining ca 90% of the interspecific variation in mean parasitism. These findings demonstrate that parental care can augment, rather than reduce, the risk of parasite transmission to offspring.
- Published
- 2022
21. Large clones of pre-existing T cells drive early immunity against SARS-COV-2 and LCMV infection
- Author
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Milighetti, M, Peng, Y, Tan, C, Mark, M, Nageswaran, G, Byrne, S, Ronel, T, Peacock, T, Mayer, A, Chandran, A, Rosenheim, J, Whelan, M, Yao, X, Liu, G, Felce, SL, Dong, T, Mentzer, AJ, Knight, JC, Balloux, F, Greenstein, E, Reich-Zeliger, S, Pade, C, Gibbons, JM, Semper, A, Brooks, T, Otter, A, Altmann, DM, Boyton, RJ, Maini, MK, McKnight, A, Manisty, C, Treibel, TA, Moon, JC, COVIDsortium Investigators, Noursadeghi, M, and Chain, B
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Multidisciplinary - Abstract
T cell responses precede antibody and may provide early control of infection. We analyzed the clonal basis of this rapid response following SARS-COV-2 infection. We applied T cell receptor (TCR) sequencing to define the trajectories of individual T cell clones immediately. In SARS-COV-2 PCR+ individuals, a wave of TCRs strongly but transiently expand, frequently peaking the same week as the first positive PCR test. These expanding TCR CDR3s were enriched for sequences functionally annotated as SARS-COV-2 specific. Epitopes recognized by the expanding TCRs were highly conserved between SARS-COV-2 strains but not with circulating human coronaviruses. Many expanding CDR3s were present at high frequency in pre-pandemic repertoires. Early response TCRs specific for lymphocytic choriomeningitis virus epitopes were also found at high frequency in the preinfection naive repertoire. High-frequency naive precursors may allow the T cell response to respond rapidly during the crucial early phases of acute viral infection.
- Published
- 2023
22. Linked networks reveal dual roles of insect dispersal and species sorting for bacterial communities in flowers
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Rachel L. Vannette, Jay A. Rosenheim, and Ash T. Zemenick
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0106 biological sciences ,media_common.quotation_subject ,Insect ,Hymenoptera ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,media_common ,0303 health sciences ,Modularity (networks) ,biology ,Ecology ,Visitor pattern ,fungi ,food and beverages ,Species sorting ,15. Life on land ,DUAL (cognitive architecture) ,biology.organism_classification ,Ecological network ,Plant species ,Nestedness ,Biological dispersal ,Arthropod ,Network approach - Abstract
Due to the difficulty of tracking microbial dispersal, it is rarely possible to disentangle the relative importance of dispersal and species sorting for microbial community assembly. Here, we leverage a detailed multilevel network to examine drivers of bacterial community assembly within flowers. We observed flower visitors to 20 focal plant species in a coflowering community in the Sierra Nevada, revealing 289 species of arthropods. We also analyzed bacterial communities on flowers of each species. We found that plant species with similar visitor communities tend to have similar bacterial communities, and visitor identity to be more important than plant relatedness in structuring floral bacterial communities. However, plant species that were hubs of arthropod visitation were not necessarily hubs of floral bacteria, suggesting an important role for species sorting. Across plant species, the composition of flower‐visiting Diptera (flies), bees and non‐bee Hymenoptera best predicted bacterial species composition on flowers. Taken together, our analyses suggest dispersal is important in determining similarity in microbial communities across plant species, but not as important in determining the overall macrostructure (nestedness, modularity) and microstructure (connectedness based on shared interactors) of the floral bacterial network. A multilevel network approach thus allows us to address features of community assembly that cannot be considered when viewing networks as separate entities.
- Published
- 2021
23. The causes and consequences of pest population variability in agricultural landscapes
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Daniel Paredes, Jay A. Rosenheim, and Daniel S. Karp
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Crops, Agricultural ,Insecticides ,Farms ,Ecology ,Agriculture ,Pest Control, Biological ,Ecosystem - Abstract
Variability in population densities is key to the ecology of natural systems but also has great implications for agriculture. Farmers' decisions are heavily influenced by their risk-aversion to pest outbreaks that result in major yield losses. However, the need for long-term pest population data across many farms has prevented researchers from exploring the drivers and implications of pest population variability. Here, we demonstrate the critical importance of population variability for sustainable farming by analyzing 13-yrs of pest densities across >1300 Spanish olive orchards and vineyards. Variable populations were more likely to cause major yield losses, but also occasionally created temporal windows when densities fell below insecticide spray thresholds. Importantly, environmental factors regulating pest variability were very distinct from factors regulating mean density, suggesting variability needs to be uniquely managed. Finally, we found diversifying landscapes may be a win-win for conservation and farmers, as diversified landscapes promote less abundant and less variable pest populations. Therefore, we encourage agricultural stakeholders to increase complexity of the landscapes surrounding their farms through conserving/restoring natural habitat and/or diversifying crops.
- Published
- 2022
24. Implication of building inventory accuracy on physical and socio-economic resilience metrics for informed decision-making in natural hazards
- Author
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Milad Roohi, John W. van de Lindt, Nathanael Rosenheim, Harvey Cutler, and Yuchen Hu
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021110 strategic, defence & security studies ,Community resilience ,Mechanical Engineering ,0211 other engineering and technologies ,020101 civil engineering ,Ocean Engineering ,02 engineering and technology ,Building and Construction ,Geotechnical Engineering and Engineering Geology ,0201 civil engineering ,Natural hazard ,Sociology ,Safety, Risk, Reliability and Quality ,Resilience (network) ,Environmental planning ,Civil and Structural Engineering - Abstract
The data and information available at the community-scale are directly linked to the ability to make a resilience-informed decision in natural hazards. This paper develops a systematic approach to ...
- Published
- 2020
25. Profile of Fork-Tailed Bush Katydid (Orthoptera: Tettigoniidae) Feeding on Fruit of Clementine Mandarins
- Author
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Xinqiang Xi, Jay A. Rosenheim, Bodil N. Cass, Tobias G Mueller, Hanna M Kahl, and Elizabeth E. Grafton-Cardwell
- Subjects
0106 biological sciences ,Citrus ,Ecology ,biology ,Orthoptera ,Tettigoniidae ,food and beverages ,General Medicine ,biology.organism_classification ,Sapindales ,01 natural sciences ,010602 entomology ,Horticulture ,Rutaceae ,Abscission ,Frugivore ,Fruit ,Insect Science ,Animals ,Clementine ,Citrus × sinensis ,Citrus sinensis ,010606 plant biology & botany - Abstract
Sweet oranges (Citrus sinensis (L.) Osbeck Sapindales: Rutaceae) dominated commercial citrus production in California until recently when there has been a shift to mandarins, mostly Citrus reticulata (Blanco) mandarins and Citrus clementina (hort. ex Tanaka) clementines. Past analyses of commercial field scouting and harvest data indicated that fork-tailed bush katydids (Scudderia furcata Brunner von Wattenwyl), a major pest in oranges, are present in clementine groves, but that fruit scarring attributed to katydids is rare. Conversely, jagged or web-like scarring attributed to caterpillars was more prevalent than expected. We used two field experiments in four representative cultivars of clementines to test four explanatory hypotheses for this observation: 1) katydids do not feed on clementine fruit, 2) damaged clementine fruit recover, 3) damaged clementine fruit preferentially abscise, and 4) katydid scars on clementine fruit have a different, undocumented morphology, not recognized as katydid damage. We find support for the latter two hypotheses. Katydids fed readily on the clementine fruit of all cultivars tested, chewing irregular holes that developed into jagged or web-like scars of a range of shapes and often led to splitting and abscission of maturing fruit. The katydid scars often more closely resembled chewing caterpillar damage than the round katydid scars in oranges, suggesting that katydid damage is being misclassified in clementines. The resistance documented in some other mandarins was not observed. Katydids are clearly a frugivorous pest causing previously unrecognized scarring in clementines.
- Published
- 2020
26. A solitary ground‐nesting wasp truncates its parental investment in response to detection of parasites
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Jay A. Rosenheim
- Subjects
Brood parasite ,Ecology ,Insect Science ,Zoology ,Nesting (computing) ,Biology ,Parental investment - Published
- 2020
27. Bugs scaring bugs: enemy‐risk effects in biological control systems
- Author
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Andrew Sih, Jay A. Rosenheim, and Michael Culshaw-Maurer
- Subjects
0106 biological sciences ,Integrated pest management ,Food Chain ,Ecology (disciplines) ,Biological pest control ,biological control ,natural enemies ,Ecological systems theory ,010603 evolutionary biology ,01 natural sciences ,predation risk ,Agricultural ecology ,Animals ,Natural enemies ,Pest Control, Biological ,Trophic cascade ,Environmental planning ,Ecosystem ,Ecology, Evolution, Behavior and Systematics ,Biological Products ,non‐consumptive effects ,Ecology ,010604 marine biology & hydrobiology ,Risk effect ,behavioural ecology ,food and beverages ,enemy‐risk effects ,Adversary ,Biological Evolution ,pest management ,Predatory Behavior ,predator–prey ecology ,trophic cascades ,Reviews and Syntheses - Abstract
Enemy‐risk effects, often referred to as non‐consumptive effects (NCEs), are an important feature of predator–prey ecology, but their significance has had little impact on the conceptual underpinning or practice of biological control. We provide an overview of enemy‐risk effects in predator–prey interactions, discuss ways in which risk effects may impact biocontrol programs and suggest avenues for further integration of natural enemy ecology and integrated pest management. Enemy‐risk effects can have important influences on different stages of biological control programs, including natural enemy selection, efficacy testing and quantification of non‐target impacts. Enemy‐risk effects can also shape the interactions of biological control with other pest management practices. Biocontrol systems also provide community ecologists with some of the richest examples of behaviourally mediated trophic cascades and demonstrations of how enemy‐risk effects play out among species with no shared evolutionary history, important topics for invasion biology and conservation. We conclude that the longstanding use of ecological theory by biocontrol practitioners should be expanded to incorporate enemy‐risk effects, and that community ecologists will find many opportunities to study enemy‐risk effects in biocontrol settings., We provide a synthetic review of enemy‐risk effects in biological control of arthropod pests. We provide a conceptual overview of enemy‐risk effects, review the current body of literature documenting risk effects in biocontrol systems and describe in detail ways in which risk effects may impact the implementation of biocontrol programs.
- Published
- 2020
28. Insect diversity over 36 years at a protected Sierra Nevada (California) site: towards an evaluation of the insect apocalypse hypothesis
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Philip S. Ward and Jay A. Rosenheim
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Ecology ,Insect Science ,media_common.quotation_subject ,Insect ,Biology ,media_common ,Diversity (politics) - Published
- 2020
29. Ladislav Cabada, Šárka Waisová a kol.: Bezpečnostní, zahraniční a evropská politika Visegrádské skupiny
- Author
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Adam Rosenheim
- Subjects
Political Science and International Relations ,lcsh:International relations ,book review ,lcsh:JZ2-6530 - Abstract
Visegrádská skupina se po rozpadu sovětského bloku stala nejvýraznějšímregionálním uskupením v prostoru střední Evropy. Historicky se jedná oregion s mimořádnou geopolitickou senzitivitou, přičemž po pádu železnéopony se státy v něm ležící jednoznačně vyslovily pro definitivní začleněnído západních integračních struktur. Nehledě na úspěch tohoto snažení ačlenství v EU a NATO vnímají i v současnosti státy střední Evropy svouperiferní pozici a snaží se společně čelit hrozbám a výzvám pro svoubezpečnost. Naše kniha analyzuje, jaké strategie a přístupy Visegrádskáčtyřka a její členské státy v oblasti bezpečnostní a zahraniční politikypreferují, jaká rizika vnímají jako nejvýraznější a jaké návrhy opatření ařešení společně či jednostranně prosazují.
- Published
- 2020
- Full Text
- View/download PDF
30. Table S1 from A double-edged sword: parental care increases risk of offspring infection by a maternally vectored parasite
- Author
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Millena, Rebecca Jean A. and Rosenheim, Jay A.
- Subjects
fungi - Abstract
Parental care can protect offspring from predators but can also create opportunities for parents to vector parasites to their offspring. We hypothesized that the risk of infection by maternally vectored parasites would increase with the frequency of mother–offspring contact. Ammophila spp. wasps (Hymenoptera: Sphecidae) build nests in which they rear single offspring. Ammophila species exhibit varied offspring provisioning behaviours: some species enter the nest once to provision a single, large caterpillar, whereas others enter the nest repeatedly to provision with many smaller caterpillars. We hypothesized that each nest visit increases the risk of offspring parasitism by Paraxenos lugubris (Strepsiptera: Xenidae), whose infectious stages ride on the mother wasp (phoresy) to reach the vulnerable Ammophila offspring. We quantified parasitism risk by external examination of museum-curated Ammophila specimens—the anterior portion of P. lugubris protrudes between the adult host's abdominal sclerites and reflects infection during the larval stage. As predicted, Ammophila species that receive larger numbers of provisions incur greater risks of parasitism, with nest provisioning behaviour explaining ca 90% of the interspecific variation in mean parasitism. These findings demonstrate that parental care can augment, rather than reduce, the risk of parasite transmission to offspring.
- Published
- 2022
- Full Text
- View/download PDF
31. (Figure S1) Contrasts Mapped Onto Phylogeny from A double-edged sword: parental care increases risk of offspring infection by a maternally vectored parasite
- Author
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Millena, Rebecca Jean A. and Rosenheim, Jay A.
- Abstract
Phylogenetic contrasts of mean number of prey provisioned (black) and parasitism rates (red) plotted onto a phylogenetic tree of ten Ammophila spp., taken from Field et al., 2011
- Published
- 2022
- Full Text
- View/download PDF
32. ESM_files.docx from A double-edged sword: parental care increases risk of offspring infection by a maternally vectored parasite
- Author
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Millena, Rebecca Jean A. and Rosenheim, Jay A.
- Subjects
fungi - Abstract
Parental care can protect offspring from predators but can also create opportunities for parents to vector parasites to their offspring. We hypothesized that the risk of infection by maternally vectored parasites would increase with the frequency of mother–offspring contact. Ammophila spp. wasps (Hymenoptera: Sphecidae) build nests in which they rear single offspring. Ammophila species exhibit varied offspring provisioning behaviours: some species enter the nest once to provision a single, large caterpillar, whereas others enter the nest repeatedly to provision with many smaller caterpillars. We hypothesized that each nest visit increases the risk of offspring parasitism by Paraxenos lugubris (Strepsiptera: Xenidae), whose infectious stages ride on the mother wasp (phoresy) to reach the vulnerable Ammophila offspring. We quantified parasitism risk by external examination of museum-curated Ammophila specimens—the anterior portion of P. lugubris protrudes between the adult host's abdominal sclerites and reflects infection during the larval stage. As predicted, Ammophila species that receive larger numbers of provisions incur greater risks of parasitism, with nest provisioning behaviour explaining ca 90% of the interspecific variation in mean parasitism. These findings demonstrate that parental care can augment, rather than reduce, the risk of parasite transmission to offspring.
- Published
- 2022
- Full Text
- View/download PDF
33. A transitory pool of labile organic carbon hosted in global fjords revealed by thermal pyrolytic decomposition analysis
- Author
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Xingqian Cui, Thomas Bianchi, and Brad Rosenheim
- Published
- 2022
34. Table S2 from A double-edged sword: parental care increases risk of offspring infection by a maternally vectored parasite
- Author
-
Millena, Rebecca Jean A. and Rosenheim, Jay A.
- Subjects
fungi - Abstract
Parental care can protect offspring from predators but can also create opportunities for parents to vector parasites to their offspring. We hypothesized that the risk of infection by maternally vectored parasites would increase with the frequency of mother–offspring contact. Ammophila spp. wasps (Hymenoptera: Sphecidae) build nests in which they rear single offspring. Ammophila species exhibit varied offspring provisioning behaviours: some species enter the nest once to provision a single, large caterpillar, whereas others enter the nest repeatedly to provision with many smaller caterpillars. We hypothesized that each nest visit increases the risk of offspring parasitism by Paraxenos lugubris (Strepsiptera: Xenidae), whose infectious stages ride on the mother wasp (phoresy) to reach the vulnerable Ammophila offspring. We quantified parasitism risk by external examination of museum-curated Ammophila specimens—the anterior portion of P. lugubris protrudes between the adult host's abdominal sclerites and reflects infection during the larval stage. As predicted, Ammophila species that receive larger numbers of provisions incur greater risks of parasitism, with nest provisioning behaviour explaining ca 90% of the interspecific variation in mean parasitism. These findings demonstrate that parental care can augment, rather than reduce, the risk of parasite transmission to offspring.
- Published
- 2022
- Full Text
- View/download PDF
35. 6.2 - Multiparameter Sensorik zur Überwachung von Brauprozessen
- Author
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T. Brengartner, S. Lopatin, J. Rosenheim, and J. Schleiferböck
- Published
- 2022
36. (Figure S2) Regression of Contrasts from A double-edged sword: parental care increases risk of offspring infection by a maternally vectored parasite
- Author
-
Millena, Rebecca Jean A. and Rosenheim, Jay A.
- Subjects
humanities - Abstract
Linear regression of phylogenetic contrasts between ten Ammophila spp. included in the molecular phylogeny of the tribe Ammophilini from Field et al. (2011). Datapoints jittered for visibility. Shaded area represents the 95% confidence interval for the linear regression.
- Published
- 2022
- Full Text
- View/download PDF
37. Effect of Residential Building Wind Retrofits on Social and Economic Community-Level Resilience Metrics
- Author
-
Wanting Wang, John W. van de Lindt, Nathanael Rosenheim, Diego Calderon, Brad Hartman, Jong Sung Lee, and Harvey Cutler
- Subjects
Community resilience ,Open source ,Geography ,business.industry ,Natural hazard ,Small footprint ,Environmental resource management ,food and beverages ,Economic community ,Tornado ,business ,Resilience (network) ,Civil and Structural Engineering - Abstract
Tornadoes occur at a high frequency in the United States compared with other natural hazards but have a substantially small footprint. A single high-intensity tornado can result in high cas...
- Published
- 2021
38. History of Anvers-Hugo Trough, western Antarctic Peninsula shelf, since the Last Glacial Maximum. Part II: Palaeo-productivity and palaeoceanographic changes during the Last Glacial Transition
- Author
-
Zoë A. Roseby, James A. Smith, Claus-Dieter Hillenbrand, Claire S. Allen, Amy Leventer, Kelly Hogan, Matthieu J.B. Cartigny, Brad E. Rosenheim, Gerhard Kuhn, and Robert D. Larter
- Subjects
Archeology ,Global and Planetary Change ,Geology ,Ecology, Evolution, Behavior and Systematics - Abstract
Following the Last Glacial Maximum (LGM; ca. 23-19 calibrated [cal.] kyr before present [BP]), atmospheric and oceanic warming, together with global sea-level rise, drove widespread deglaciation of the Antarctic Ice Sheet, increasing the flux of freshwater to the ocean and leading to substantial changes in marine biological productivity. On the Antarctic continental shelf, periods of elevated biological productivity, often preserved in the sediment record as laminated (and sometimes varved) diatomaceous oozes (LDO), have been reported from several locations and are typically associated with the formation of calving bay re-entrants during ice sheet retreat. Understanding what drives the formation and deposition of LDOs, and the impact of deglacial processes on biogenic productivity more generally, can help inform how Antarctic coastal environments will respond to current and future ice sheet melting. In this study we utilise a suite of sediment cores recovered from Anvers-Hugo Trough (AHT), western Antarctic Peninsula shelf, which documents the transition from subglacial to glacimarine conditions following retreat of an expanded ice stream after the LGM. We present quantitative absolute diatom abundance (ADA) and species assemblage data, to investigate changes in biological productivity during the Last Glacial Transition (19-11 cal kyr BP). In combination with radiocarbon dating, we show that seasonally open marine conditions were established on the mid-shelf by 13.6 cal kyr BP, but LDOs did not start to accumulate until ∼11.5 cal kyr BP. The ∼1.4 kyr delay between the onset of seasonally open marine conditions and LDO deposition indicates that physiographic changes, and specifically the establishment of a calving bay in AHT, is insufficient to explain LDO deposition alone. LDO deposition in AHT coincides with the early Holocene climatic optimum (∼11.5 – 9.0 kyr) and is therefore explained in terms of increased atmospheric/ocean temperatures, high rates of sea and glacial ice melt and the formation of a well-stratified water column in the austral spring. An implication of our study is that extensive bathymetric mapping in conjunction with detailed core analyses is required to reliably infer environmental controls on LDO deposition.
- Published
- 2022
39. History of Anvers-Hugo Trough, western Antarctic Peninsula shelf, since the Last Glacial Maximum. Part I: Deglacial history based on new sedimentological and chronological data
- Author
-
Zoë A. Roseby, James A. Smith, Claus-Dieter Hillenbrand, Matthieu J.B. Cartigny, Brad E. Rosenheim, Kelly A. Hogan, Claire S. Allen, Amy Leventer, Gerhard Kuhn, Werner Ehrmann, and Robert D. Larter
- Subjects
Archeology ,Global and Planetary Change ,Geology ,Ecology, Evolution, Behavior and Systematics - Abstract
Reconstructing the advance and retreat of past ice sheets provides important long-term context for recent change(s) and enables us to better understand ice sheet responses to forcing mechanisms and external boundary conditions that regulate grounding line retreat. This study applies various radiocarbon dating techniques, guided by a detailed sedimentological analyses, to reconstruct the glacial history of Anvers-Hugo Trough (AHT), one of the largest bathymetric troughs on the western Antarctic Peninsula (WAP) shelf. Existing records from AHT indicate that the expanded Antarctic Peninsula Ice Sheet (APIS) advanced to, or close to, the continental shelf edge during the Last Glacial Maximum (LGM; 23-19 cal kyr BP [ = calibrated kiloyears before present]), with deglaciation of the outer shelf after ∼16.3 cal kyr BP. Our new chronological data show that the APIS had retreated to the middle shelf by ∼15.7 cal kyr BP. Over this 600-year interval, two large grounding-zone wedges (GZW) were deposited across the middle (GZW2) and inner shelf (GZW3), suggesting that their formation occurred on centennial rather than millennial timescales. Expanded sequences of sub-ice shelf sediments occur seaward of the inner GZW3, which suggests that the grounding line remained stationary for a prolonged period over the middle shelf. Grounding-line retreat rates indicate faster retreat across the outer to middle shelf compared to retreat across the middle to inner shelf. We suggest that variable retreat rates relate to the broad-scale morphology of the trough, which is characterised by a relatively smooth, retrograde seabed on the outer to middle shelf and rugged morphology with a locally landward shallowing bed and deep basin on the inner shelf. A slowdown in retreat rate could also have been promoted by convergent ice flow over the inner shelf and the availability of pinning points associated with bathymetric highs around Anvers Island and Hugo Island.
- Published
- 2022
40. Vascular origin in acute transient visual disturbance: A prospective study
- Author
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Amélie Yavchitz, Rabih Hage, Olivier Gout, Cédric Lamirel, Catherine Vignal, Julien Savatovsky, Pierre Amarenco, Michael Obadia, Pierre Seners, Samuel Bidot, Elena Meseguer, Philippa C. Lavallée, Michel Rosenheim, Candice Sabben, and Kevin Zuber
- Subjects
Diplopia ,medicine.medical_specialty ,business.industry ,Amaurosis fugax ,Emergency department ,Neurovascular bundle ,Confidence interval ,Cohort Studies ,Stroke ,Neurology ,Ischemic Attack, Transient ,Risk Factors ,Internal medicine ,Visual Disturbance ,Cohort ,medicine ,Humans ,Neurology (clinical) ,Prospective Studies ,medicine.symptom ,Prospective cohort study ,business ,Aged - Abstract
Background and purpose This study was undertaken to validate a clinical score of vascular origin in patients with acute transient visual disturbances (TVDs) without diplopia. Methods We conducted a prospective study in an ophthalmology emergency department and a transient ischemic attack (TIA) clinic. Patients underwent clinical evaluation including a tailored questionnaire, brain, vascular, and ophthalmologic investigations, and 3-month follow-up. TVDs were classified according to vascular or nonvascular origin by three independent experts based on all clinical, cerebrovascular, and ophthalmologic investigations, but blind to the questionnaire results. A clinical score was derived based on clinical variables independently associated with a vascular origin, and was externally validated in an independent cohort. Results An ischemic origin of TVD was found in 45% (67/149) of patients in the derivation cohort. Age and six questions were independently associated with an ischemic origin. A nine-point score (≥70 years old = 2; monocular visual loss = 2; black or white vision = 1; single episode = 1; lack of headache = 2; diffuse, constricted, altitudinal, or lateralized visual loss pattern on drawings = 1) showed good discriminative power in identifying ischemic origin (c-statistic = 0.82) and was replicated in the validation cohort (n = 130, 25% of ischemic origin, c-statistic = 0.75). With a score ≥ 4, sensitivity was 85% (95% confidence interval = 68-95) and specificity was 52% (95% confidence interval = 41-62). In both cohorts, ophthalmologic evaluation found a vascular cause in 4% and was noncontributive in 85%. After 3 months, no patients had a stroke, TIA, or retinal infarct. Conclusions Our score may assist in predicting a vascular origin of TVD. Ophthalmologic evaluation, when not readily available, should not delay the neurovascular evaluation.
- Published
- 2021
41. Probabilistic Risk Assessment of Coupled Natural-Physical-Social Systems: Cascading Impact of Hurricane-Induced Damages to Civil Infrastructure in Galveston, Texas
- Author
-
Ehsan Fereshtehnejad, Jamie E. Padgett, Tori Tomiczek, Shannon Van Zandt, Daniel T. Cox, Nathanael Rosenheim, Walter Gillis Peacock, and Ioannis Gidaris
- Subjects
021110 strategic, defence & security studies ,010504 meteorology & atmospheric sciences ,Severe weather ,Probabilistic risk assessment ,animal diseases ,fungi ,0211 other engineering and technologies ,food and beverages ,General Social Sciences ,Storm surge ,02 engineering and technology ,Building and Construction ,01 natural sciences ,Natural (archaeology) ,Social system ,parasitic diseases ,Damages ,Forensic engineering ,Environmental science ,Civil infrastructure ,geographic locations ,0105 earth and related environmental sciences ,General Environmental Science ,Civil and Structural Engineering - Abstract
The combined effect of storm surge and wave action during severe storms in coastal regions can cause significant damage to civil infrastructures with cascading consequences to coastal commu...
- Published
- 2021
42. Pre-existing polymerase-specific T cells expand in abortive seronegative SARS-CoV-2 infection
- Author
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Christine Y.L. Tham, Laura E. McCoy, Corinna Pade, Lucy van Dorp, Áine McKnight, Francois Balloux, Antonio Bertoletti, Joseph M Gibbons, Gloryanne Aidoo-Micah, Ana M. Valdes, Cedric C.S. Tan, Emily Shaw, Joshua Rosenheim, Daniel M. Altmann, Leo Swadling, Rosemary J. Boyton, Stephanie Kucyowicz, Mariana O. Diniz, Mala K. Maini, George Joy, Aneesh Chandran, Melanie P. Jensen, Jessica Davies, Thomas A. Treibel, James C. Moon, Charlotte Manisty, COVIDsortium Investigators, Anthony T. Tan, Oliver E. Amin, Mahdad Noursadeghi, Nathalie M. Schmidt, and Nina Le Bert
- Subjects
Biology ,biology.organism_classification ,medicine.disease_cause ,Virology ,Neutralization ,medicine.anatomical_structure ,In vivo ,Cohort ,biology.protein ,medicine ,Coronaviridae ,Antibody ,Seroconversion ,Memory T cell ,Coronavirus - Abstract
Individuals with likely exposure to the highly infectious SARS-CoV-2 do not necessarily develop PCR or antibody positivity, suggesting some may clear sub-clinical infection before seroconversion. T cells can contribute to the rapid clearance of SARS-CoV-2 and other coronavirus infections1–5. We hypothesised that pre-existing memory T cell responses, with cross-protective potential against SARS-CoV-26–12, would expand in vivo to mediate rapid viral control, potentially aborting infection. We studied T cells against the replication transcription complex (RTC) of SARS-CoV-2 since this is transcribed first in the viral life cycle13–15and should be highly conserved. We measured SARS-CoV-2-reactive T cells in a cohort of intensively monitored healthcare workers (HCW) who remained repeatedly negative by PCR, antibody binding, and neutralisation for SARS-CoV-2 (exposed seronegative, ES). 16-weeks post-recruitment, ES had memory T cells that were stronger and more multispecific than an unexposed pre-pandemic cohort, and more frequently directed against the RTC than the structural protein-dominated responses seen post-detectable infection (matched concurrent cohort). The postulate that HCW with the strongest RTC-specific T cells had an abortive infection was supported by a low-level increase in IFI27 transcript, a robust early innate signature of SARS-CoV-2 infection16. We showed that the RNA-polymerase within RTC was the largest region of high sequence conservation across human seasonal coronaviruses (HCoV) and was preferentially targeted by T cells from UK and Singapore pre-pandemic cohorts and from ES. RTC epitope-specific T cells capable of cross-recognising HCoV variants were identified in ES. Longitudinal samples from ES and an additional validation cohort, showed pre-existing RNA-polymerase-specific T cells expanded in vivo following SARS-CoV-2 exposure, becoming enriched in the memory response of those with abortive compared to overt infection. In summary, we provide evidence of abortive seronegative SARS-CoV-2 infection with expansion of cross-reactive RTC-specific T cells, highlighting these highly conserved proteins as targets for future vaccines against endemic and emerging Coronaviridae.
- Published
- 2021
43. Herbivory by European Earwigs (Forficula auricularia; Dermaptera: Forficulidae) on Citrus Species Commonly Cultivated in California
- Author
-
Hanna M Kahl, Tobias G Mueller, Bodil N Cass, Xinqiang Xi, Emma Cluff, and Jay A Rosenheim
- Subjects
Citrus ,Ecology ,Auricularia ,Insect Science ,Fruit ,food and beverages ,Animals ,General Medicine ,Herbivory ,Citrus sinensis - Abstract
Agricultural plant species differ in susceptibility to herbivores; therefore, identifying natural resistances or tolerances to pests can be leveraged to develop preventative, integrated pest management approaches. While many Citrus species are grown in California, most pest management guidelines are based upon research conducted on navel oranges [Citrus sinensis (L.) Osbeck; Sapindales: Rutaceae]. A recent study has established European earwigs (Forficula auricularia L.; Dermaptera: Forficulidae) as herbivores of young navel orange fruit, causing damage ranging from small bite marks to large chewed holes. It is unknown whether earwigs damage fruit of other citrus species. We conducted field experiments in which we caged earwigs to branch terminals bearing young fruit to explore potential differences in susceptibility of Citrus species to European earwigs. Specifically, we tested whether three species, navel oranges, clementines (C. clementina hort. ex Tanaka), and true mandarins (C. reticulata Blanco) exhibit differences in: 1) feeding deterrence to earwigs; 2) suitability as food for earwigs; 3) preferential abscission of damaged fruit; and 4) healing of damaged fruit. Earwigs caused heavy damage on navel orange and clementine fruit, whereas heavy damage was rare on true mandarin fruit. There was little evidence of preferential abscission of damaged fruit or healing of seriously damaged fruit. Consequently, several heavily damaged navel orange and one clementine fruit were retained to harvest and developed large scars. Overall, we found that Citrus fruit vary in their susceptibility to earwigs, and pest management strategies for earwigs should be refined to consider their varying effects on different Citrus species.
- Published
- 2021
44. Integration of detailed household and housing unit characteristic data with critical infrastructure for post-hazard resilience modeling
- Author
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Roberto Guidotti, Walter Gillis Peacock, Nathanael Rosenheim, and Paolo Gardoni
- Subjects
Physical infrastructure ,Community resilience ,Geography, Planning and Development ,Building and Construction ,Environmental economics ,Hazard ,Critical infrastructure ,Social system ,Business ,Safety, Risk, Reliability and Quality ,Resilience (network) ,Spatial analysis ,Social vulnerability ,Civil and Structural Engineering - Abstract
This paper presents a methodology that generates and links high-resolution spatial data on households and housing units with heterogeneous characteristics (i.e., size, tenure status, occupi...
- Published
- 2019
45. Integration of physical infrastructure and social systems in communities’ reliability and resilience analysis
- Author
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Paolo Gardoni, Nathanael Rosenheim, and Roberto Guidotti
- Subjects
021110 strategic, defence & security studies ,education.field_of_study ,Community resilience ,021103 operations research ,Computer science ,Event (computing) ,media_common.quotation_subject ,Population ,0211 other engineering and technologies ,Physical system ,Probabilistic logic ,02 engineering and technology ,Industrial and Manufacturing Engineering ,Critical infrastructure ,Interdependence ,Risk analysis (engineering) ,Safety, Risk, Reliability and Quality ,education ,Resilience (network) ,media_common - Abstract
This paper proposes probabilistic flow-based models for the capacity and demand of critical infrastructure considering different levels of resolution. The models are set in a probabilistic procedure that captures the impact of the damaging event on the infrastructure. The procedure predicts the reduction or loss of functionality of the infrastructure in terms of their ability to provide essential goods or services. In the aftermath of a damaging event, infrastructure change their capacities, due to the damage to the physical components, and they may not be able to satisfy pre-event demands. Furthermore, the post-event demands at the nodes of the infrastructure might change because of the human response (e.g., evacuation or relocation.) The probabilistic procedure presented in this paper integrates physical infrastructure and social systems to predict the change in demand on the infrastructure. As an example, the paper applies the proposed procedure to the modeling of the potable water network of Seaside, Oregon considering a seismic event as the damaging event. The paper shows that neglecting the interdependency between physical infrastructure and social systems may result in estimates of i) higher demands on the physical systems; ii) slower recovery; and iii) smaller impacts on society in terms of population dislocation.
- Published
- 2019
46. Probabilistic framework for evaluating food security of households in the aftermath of a disaster
- Author
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Maria Perez, Hussam Mahmoud, Bruce R. Ellingwood, Nathanael Rosenheim, and Saeed Nozhati
- Subjects
021110 strategic, defence & security studies ,Food security ,Natural resource economics ,Food availability ,Mechanical Engineering ,digestive, oral, and skin physiology ,fungi ,0211 other engineering and technologies ,food and beverages ,020101 civil engineering ,Ocean Engineering ,02 engineering and technology ,Building and Construction ,Geotechnical Engineering and Engineering Geology ,Critical infrastructure ,0201 civil engineering ,Natural hazard ,Threatened species ,Income level ,Business ,Safety, Risk, Reliability and Quality ,Probabilistic framework ,Resilience (network) ,Civil and Structural Engineering - Abstract
For households of all income levels, and especially for those that are food insecure, food access can be threatened by natural hazards. Extreme natural hazards can disrupt critical infrastructure s...
- Published
- 2019
47. Compositional and beam‐size‐dependent effects on pressure baseline in clumped isotope mass spectrometry
- Author
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Ryan A Venturelli and Brad E. Rosenheim
- Subjects
Isotope ,Chemistry ,Mathematics::History and Overview ,010401 analytical chemistry ,Organic Chemistry ,Mass spectrometry ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Computational physics ,chemistry.chemical_compound ,Range (statistics) ,Carbonate ,Isotope-ratio mass spectrometry ,Spectroscopy ,Intensity (heat transfer) ,Beam (structure) ,Line (formation) - Abstract
RATIONALE The analysis of carbonate samples for the application of clumped isotopes to paleoclimate reconstruction necessitates smaller beam intensities. However, there is a relationship between beam intensity and pressure-dependent baseline (PBL), and therefore between beam intensity and the correction for PBL. Here we explain the relationship between PBL and beam intensity to develop a better correction protocol and an improved understanding of clumped isotope mass spectrometry. METHODS We describe a beam size experiment using our Isoprime isotope ratio mass spectrometer in which samples of the carbonate standard IAEA-C1 were analyzed at 30, 50, and 70 nA to establish an optimal protocol and a new method to correct for PBL using the theoretical constraint of invariable Δ47 over a range of δ47 (bulk isotope composition) values. We also explore the effects of both over- and under-correction of PBL on equilibrated and heated gas samples to understand the effect of mis-correction of PBL. RESULTS The results of our beam size experiments showed that a direct measurement of the baseline consistently introduced variability to measurements of the Δ47 of heated gases, equilibrated gases, and carbonate standards. These results necessitated a new protocol to account for PBL in our system. Our new approach flattens the reference frame line slope to 0 and, importantly, reduces the variability of data points about the heated gas line. We also describe, for the first time, an empirically derived description of the compositional effect of PBL. CONCLUSIONS A seemingly small change in our isotope ratio mass spectrometer resulted in a better understanding of PBL, for which we have developed an empirically based correction protocol to apply. Our new protocol has the potential to reduce analytical time for laboratories measuring PBL, and supports the need for carbonate mineral-based clumped isotope standards.
- Published
- 2018
48. Multiple sclerosis: Is there a risk of worsening after yellow fever vaccination?
- Author
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Catherine Goujon, C. Papeix, Catherine Lubetzki, Christine Lebrun-Frenay, Bruno Stankoff, Jean-Sébastien Vidal, Elisabeth Maillart, C. Bensa, Julie Mazoyer, Odile Launay, Valérie Pourcher, Serge Mrejen, Céline Louapre, Anne-Laure Dubessy, and Michel Rosenheim
- Subjects
medicine.medical_specialty ,Multiple Sclerosis ,Yellow fever vaccine ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Multiple Sclerosis, Relapsing-Remitting ,Yellow fever vaccination ,Yellow Fever ,medicine ,Humans ,030212 general & internal medicine ,Retrospective Studies ,Potential risk ,business.industry ,Multiple sclerosis ,Yellow fever ,Vaccination ,medicine.disease ,Dermatology ,Neurology ,Neurology (clinical) ,business ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Background: Yellow fever vaccine (YFV) is not advised for multiple sclerosis (MS) patients because of the potential risk of post-vaccine relapses. Objective: To assess the risk of relapsing-remitting multiple sclerosis (RR-MS) worsening after YFV. Methods: Non-interventional observational retrospective, exposed/non-exposed cohort study nested in the French national cohort including MS. Results: 128 RR-MS were included. The 1-year annualized relapse rate (ARR) following YFV did not differ between exposed: 0.219 (0.420) and non-exposed subjects: 0.208 (0.521) ( p = 0.92). Time to first relapse was not different between groups (adjusted hazard ratio (HR) = 1.33; 95% confidence interval (CI) = 0.53–3.30, p = 0.54). Conclusion: These results suggest that YFV does not worsen the course of RR-MS.
- Published
- 2021
49. Reply to Comment by R. Parkinson on 'Increasing Rates of Carbon Burial in Southwest Florida Coastal Wetlands' by J. Breithaupt et al
- Author
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Laura C. Feher, Christian J. Sanders, Brad E. Rosenheim, Gordon H. Anderson, Ryan P. Moyer, Lisa G. Chambers, Donald R. Cahoon, Kara R. Radabaugh, James C. Lynch, Joshua L. Breithaupt, Thomas S. Bianchi, Kevin R.T. Whelan, Derrick R. Vaughn, Michael J. Osland, and Joseph M. Smoak
- Subjects
Total organic carbon ,Atmospheric Science ,geography ,geography.geographical_feature_category ,Ecology ,Paleontology ,Soil Science ,chemistry.chemical_element ,Forestry ,Wetland ,Aquatic Science ,Accretion (finance) ,Oceanography ,Sea level rise ,chemistry ,Environmental science ,Carbon ,Water Science and Technology - Published
- 2021
50. Non-severe SARS-CoV-2 infection is characterised by very early T cell proliferation independent of type 1 interferon responses and distinct from other acute respiratory viruses
- Author
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Charlotte Manisty, Mahdad Noursadeghi, Amanda Semper, Leo Swadling, Mala K. Maini, Rishi K Gupta, Corrina Pade, Joseph M Gibbons, José Afonso Guerra-Assunção, Matthew Whelan, Gayathrie Nageswaran, Marc Robert de Massy, Tim Brooks, Gabriele Pollara, Tahel Ronel, Joshua Rosenheim, Áine McKnight, Thomas A. Treibel, Aneesh Chandran, Blanca Sanz-Magallon Duque De Estrada, James C. Moon, Rosemary J. Boyton, Annemarie Woolston, Gillian S. Tomlinson, COVIDsortium Investigators, Daniel M. Altmann, and Benjamin M. Chain
- Subjects
Cell growth ,viruses ,T cell ,T-cell receptor ,Biology ,Virus ,Transcriptome ,medicine.anatomical_structure ,Interferon ,Immunology ,medicine ,biology.protein ,Cytotoxic T cell ,Antibody ,medicine.drug - Abstract
The correlates of natural protective immunity to SARS-CoV-2 in the majority who experience asymptomatic infection or non-severe disease are not fully characterised, and remain important as new variants emerge. We addressed this question using blood transcriptomics, multiparameter flow cytometry and T cell receptor (TCR) sequencing spanning the time of incident infection. We identified a type 1 interferon (IFN) response common to other acute respiratory viruses, and a cell proliferation response that discriminated SARS-CoV-2 from other viruses. These responses peaked by the time the virus was first detected, and in some preceded virus detection. Cell proliferation was most evident in CD8 T cells and associated with rapid expansion of SARS-CoV-2 reactive TCRs. We found an equally rapid increase in immunoglobulin transcripts, but circulating virus-specific antibodies lagged by 1-2 weeks. Our data support a protective role for rapid induction of type 1 IFN and CD8 T cell responses to SARS-CoV-2.
- Published
- 2021
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