35 results on '"Payri, Claude"'
Search Results
2. Molecular phylogenies support taxonomic revision of three species of Laurencia (Rhodomelaceae, Rhodophyta), with the description of a new genus
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De Reviers, Bruno, Le Gall, Line, Rousseau, Florence, Gey, Delphine, Kurihara, Akira, Maggs, Christine, Martin-Lescanne, Julie, Payri, Claude, Reviers, Bruno, Sherwood, Alison, Line,, Gall, L, Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Outils et Méthodes de la Systématique Intégrative (OMSI), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), University of Hawai'i [Honolulu] (UH), Boumemouth University, Ecologie marine tropicale des océans Pacifique et Indien (ENTROPIE [Nouvelle-Calédonie]), Institut de Recherche pour le Développement (IRD [Nouvelle-Calédonie])-Ifremer - Nouvelle-Calédonie, Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de la Nouvelle-Calédonie (UNC), Ifremer - Nouvelle-Calédonie, Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD [Nouvelle-Calédonie])-Université de la Nouvelle-Calédonie (UNC), Biologie Intégrative des Populations, École pratique des hautes études (EPHE)-Centre National de la Recherche Scientifique (CNRS), Unité de recherche en génomique végétale (URGV), Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE)-Institut National de la Recherche Agronomique (INRA), Systématique, adaptation, évolution (SAE), and Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)
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0106 biological sciences ,Systematics ,EPHE ,UPMC ,Laurencia crustiformans ,Evolution ,Lineage (evolution) ,[SDV]Life Sciences [q-bio] ,MNHN ,Equipe Exploration ,[SDV.BID]Life Sciences [q-bio]/Biodiversity ,[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy ,010603 evolutionary biology ,01 natural sciences ,Espèces ,Laurencia caspica ,Genus ,Botany ,UMR 7205 CNRS ,Gall ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,Laurencia flexilis ,Ecology, Evolution, Behavior and Systematics ,biology ,010604 marine biology & hydrobiology ,Biodiversité (ISyEB) ,Laurencia ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Sorbonne Universités ,Ribosomal RNA ,biology.organism_classification ,Rhodomelaceae ,Muséum National d'Histoire Naturelle ,9 Institut de Systématique ,Sister group ,QL1-991 ,QK1-989 ,Ohelopapa ,Osmundea ,Zoology ,case postale N° 39 - Abstract
The systematics of the Laurencia complex was investigated using a taxon-rich data set including the chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene only and a character-rich data set combining mitochondrial cytochrome oxidase 1 (COI-5P), the rbcL marker, and the nuclear large subunit of the ribosomal operon (LSU). Bayesian and ML analyses of these data sets showed that three species hitherto placed in the genus Laurencia J.V.Lamour. were not closely related to Laurencia s. str. Laurencia caspica Zinova & Zaberzhinskaya was the sister group of the remaining Osmundea Stackh. species, L. crustiformans McDermid joined Palisada and L. flexilis Setch. consisted of an independent lineage. In light of these results a new genus, Ohelopapa F.Rousseau, Martin-Lescanne, Payri & L.Le Gall gen. nov., is proposed to accommodate L. flexilis. This new genus is morphologically characterized by four pericentral cells in each vegetative axial segment; however, it lacks ‘corps en cerise’ in cortical cells and secondary pit connections between cortical cells, which are characteristic of Laurencia. Three novel combinations are proposed to render the classification closer to a natural system: Ohelopapa flexilis (Setch.) F.Rousseau, Martin-Lescanne, Payri & L.Le Gall comb. nov., Osmundea caspica (Zinova & Zaberzhinskaya) Maggs & L.M.McIvor comb. nov. and Palisada crustiformans (McDermid) A.R.Sherwood, A.Kurihara & K.W.Nam comb. nov.
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- 2017
3. Shedding new light on old algae : matching names and sequences in the brown algal genus Lobophora (Dictyotales, Phaeophyceae)
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Vieira, C., Camacho, O., Wynne, M. J., Mattio, L., Anderson, R. J., Bolton, J. J., Sanson, M., D'Hondt, S., Leliaert, F., Fredericq, S., Payri, Claude, and De Clerck, O.
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Ralfsia ,Zonaria ,Lobophora ,Stypopodium ,Dictyota ,type material ,types ,DNA ,Aglaozonia ,herbarium ,Pocockiella - Abstract
The existence of massive cryptic diversity in algae makes linking DNA-based lineages to existing taxa exceedingly difficult. A better integration of historical collections into modern taxonomic research is therefore highly desirable. Using the brown, algal genus Lobophora as a test case, we explore the feasibility of linking taxonomic names to clades in modern phylogenies. Despite Lobophora being a pantropical genus with probably more than 100 species, traditionally only a handful of species have been recognized. In this study we reevaluated the identity of 17 historical taxa thought to belong to Lobophora by attempting DNA amplification of herbarium material as well as specimens recently collected from the type localities (epitypes). In an attempt to assign them to Molecular Operational Taxonomic Units, the obtained sequences were integrated in a global Lobophora phylogeny based upon data derived from more than 650 specimens. Our results indicate that although five sequences were obtained from type specimens, exclusive reliance on information preserved in type specimens is problematic. Epitype material proved a more successful way forward, but this route often comes with a considerable degree of uncertainty, especially in tropical regions where the extent of sympatry among Lobophora lineages is often considerable. More problematic from a broader perspective is the fact that for 35% of historical taxa, either the type could not be traced or permission was not granted to extract DNA from the types. Such a low accessibility rate may reduce our reliance on type material and jeopardize future efforts to integrate historical taxa into a framework of a modern DNA-based taxonomy.
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- 2016
4. Reefs at the edge : coral community structure around Rapa, southernmost French Polynesia
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Adjeroud, Mehdi, Wallace, C. C., Bosserelle, P., Payri, Claude, Menou, J. L., and Pichon, M.
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marginal ,subtropical reefs ,community structure ,coral reefs ,scleractinian corals ,Austral Islands ,environments ,spatial patterns - Abstract
Rapa (27 degrees 36S, 144 degrees 20W) is a small (similar to 40km(2)) volcanic island isolated in the Southern Austral Archipelago, where direct anthropogenic stressors are extremely limited. Here, we present the results of the first quantitative survey of coral community structure across habitats and depths around the island. Despite its geographical isolation in the depauperate South Central Pacific, its small size and unfavourable environmental conditions (competition with macroalgae, low sea surface temperatures, reduced reef accretion), the diversity of scleractinian corals at Rapa is particularly high (112 species from 32 genera, including 37 species of Acropora) in comparison to other French Polynesian islands and subtropical Pacific locations. Our results indicate that the abundance (>100 colonies per 10m(2) recorded at nine of the 17 sampling stations) and cover (>40% at four stations) of corals are relatively high for a marginal reef location. Strong spatial heterogeneity was found, with high variation in diversity, abundance, cover and community composition among stations. Variation in community composition was related to habitat types, with distinct assemblages among fringing reefs within bays, reef formations at bay entrances, and those on the submerged platform surrounding the island. On the platform, a depth gradient was detected, with generic richness, abundance and cover generally greater at deeper stations (18-20m depth) compared with medium-depth (10-12m) and shallow (1-3m) stations. A gradient was also recorded along bays, with increasing coral diversity and abundance from the bay heads to the bay entrances. The coral community at Rapa was characterized by the presence of several taxa not found in other French Polynesian archipelagos and the rarity of others that are common and abundant in the Society and the Tuamotu islands. Another distinctive feature of reef communities at Rapa is the high cover and dominance of macroalgae, particularly in the shallower parts of the surrounding platform, which probably explains the lower densities of coral colonies recorded there. These characteristics of the diversity and biogeographical composition of coral assemblages at Rapa provide considerable ecological grounds for its conservation.
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- 2016
5. A phylogenetic re-appraisal of the family liagoraceae sensu lato (nemaliales, rhodophyta) based on sequence analyses of two plastid genes and postfertilization development
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Lin, S. M., Rodriguez-Prieto, C., Huisman, J. M., Guiry, M. D., Payri, Claude, Nelson, W. A., and Liu, S. L.
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Nemaliaceae ,Yamadaellaceae ,Liagoraceae sensu stricto ,fam. nov ,Liagoropsidaceae ,rbcL ,psaA ,molecular phylogeny ,carposporophyte development - Abstract
The marine red algal family Liagoraceae sensu lato is shown to be polyphyletic based on analyses of a combined rbcL and psaA data set and the pattern of carposporophyte development. Fifteen of eighteen genera analyzed formed a monophyletic lineage that included the genus Liagora. Nemalion did not cluster with Liagoraceae sensu stricto, and Nemaliaceae is reinstated, characterized morphologically by the formation of the primary gonimolobes by longitudinal divisions of the gonimoblast initial. Yamadaella and Liagoropsis, previously placed in the Dermonemataceae, are shown to be independent lineages and are recognized as two new families Yamadaellaceae and Liagoropsidaceae. Yamadaellaceae is characterized by two gonimoblast initials cut off bilaterally from the fertilized carpogonium and diffusely spreading gonimoblast filaments. Liagoropsidaceae is characterized by at least three gonimoblast initials cut off by longitudinal septa from the fertilized carpogonium. In contrast, Liagoraceae sensu stricto is characterized by a single gonimoblast initial cut off transversely or diagonally from the fertilized carpogonium. Reproductive features, such as diffuse gonimoblasts and unfused carpogonial branches following postfertilization, appear to have evolved on more than one occasion in the Nemaliales and are therefore not taxonomically diagnostic at the family level, although they may be useful in recognizing genera.
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- 2015
6. Two new species of Platoma (Schizymeniaceae) from the western South Pacific Ocean
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D'Archino, R., Nelson, W. A., Payri, Claude, and Zuccarello, G. C.
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New Caledonia ,rbcL ,Rhodophyta ,Nemastomatales ,New Zealand ,Taxonomy - Abstract
Recent collections in northern New Zealand and New Caledonia revealed a single undescribed species of Platoma in each of these countries. Platoma novae-zealandiae sp. nov. is distinguished from its New Caledonian congener by its less foliose habit, subterete to flattened branches decreasing in width with increasing level of branching, distinctive protuberant ostiolate cystocarps, and large granular 'gland' cells. These features contrast with the morphology of Platoma novae-caledoniae sp. nov., which was irregularly to pseudodichotomously branched, with branches of almost equal width throughout, more blade-like and polymorphic, with barely protuberant nonostiolate cystocarps and uniformly refractive gland cells. These two species add to the regional floras of these highly biodiverse areas. These new taxa of Platoma increase the total number of species to 10; of these, five are known from the western Pacific, of which four are endemic to the region.
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- 2015
7. Why fight if you can escape? Strategies of the brown algal genus Lobophora (Dictyotales, Phaeophyceae) against herbivores
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Vieira, Christophe, Pierre-Louis Stenger, Moleana, Thibaud, Clerck, Olivier De, and Payri, Claude
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- 2015
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8. Species diversityand molecular phylogeny of the crustose coralline algae (corallinales, rhodophyta) from the warm water western Pacific ocean with an emphasis on species from Taiwan
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Lin, S. M., Liu, L. C., and Payri, Claude
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- 2015
9. Overgrowth and killing of corals by the brown alga Lobophora hederacea (Dictyotales, Phaeophyceae) on healthy reefs in New Caledonia : a new case of the epizoism syndrome
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Vieira, C., Payri, Claude, and De Clerck, O.
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Seriatopora ,coral killer ,macroalgal-coral competition - Abstract
Coral reef degradation is often associated with regime shifts from coral- to macroalgal-dominated reefs. These shifts demonstrate that under certain conditions (e.g. coral mortality, decrease in herbivory, increased nutrients supply) some macroalgae may overgrow corals. The outcome of the competition is dependent on algal aggressiveness and the coral susceptibility. In undisturbed reefs, herbivore grazing is regulating macroalgal cover, thus preventing the latter from overgrowing corals. However, some macroalgae have evolved strategies not only to outcompete corals but also to escape herbivory to some extent, allowing overgrowth of some coral species in undisturbed reefs. Epizoism represents one of those successful strategies, and has been previously documented with red algae, cyanobacteria and Lobophora variegata (Dictyotales, Phaeophyceae). Here we report a new case of epizoism leading to coral mortality, involving a recently described species of Lobophora, L.hederacea, overgrowing the coral Seriatopora caliendrum (Pocilloporidae) in undisturbed reefs in New Caledonia.
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- 2015
10. Vallitalea pronyensis sp nova, isolated from a marine alkaline hydrothermal chimney
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Ben Aissa, F., Postec, A., Erauso, G., Payri, Claude, Pelletier, Bernard, Hamdi, M., Ollivier, Bernard, and Fardeau, Marie-Laure
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A novel thermotolerant, anaerobic, Gram-stain-positive, spore-forming bacterium was isolated from a hydrothermal chimney in Prony Bay, New Caledonia. This strain, designated FatNl3(T), grew at 15-55 degrees C (optimum 30 degrees C) and at pH 5.8-8.9 (optimum 7.7). It was slightly halophilic, requiring at least 0.5% NaCl for growth (optimum 2.5-3.0 %), and was able to grow at up to 6% NaCl. Sulfate, thiosulfate, elemental sulfur, sulfite, nitrate and nitrite were not used as terminal electron acceptors. Growth of strain FatNl3(T) was inhibited in the presence of sulfite (2 mM) or nitrite (2 mM). Strain FatNl3(T) fermented cellobiose, glucose, mannose, maltose, sucrose, galactose, lactose, ribose, fructose, rhannnose, raffinose, xylose, yeast extract, peptone and biotrypticase. The main fermentation products from glucose metabolism were acetate, ethanol, H-2 and CO2. The predominant cellular fatty acids were iso-C-15:0 and anteiso-C-15:0. The main polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, and unknown glycolipids and phospholipids. The G+C content of the genomic DNA was 36.6 mol%. On the basis of phylogenetic and physiological properties, strain FatNl3(T) (=DSM 25904=JCM 18391) belonging to the phylum Firmicutes, class Clostridia, order Clostridiales, is proposed as the type strain of a novel species of the genus Vallitalea, for which the name Vallitalea pronyensis sp. nov. is proposed.
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- 2014
11. North meets south : taxonomic and biogeographic implications of a phylogenetic assessment of Sargassum subgenera Arthrophycus and Bactrophycus (Fucales, Phaeophyceae)
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Dixon, R. R. M., Mattio, L., Huisman, J. M., Payri, Claude, Bolton, J. J., and Gurgel, C. F. D.
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cox3 ,Biogeography ,Halochloa ,Molecular phylogenetics ,Arthrophycus ,rbcL-S spacer ,Bactrophycus ,Taxonomic revision ,ITS-2 - Abstract
The Sargassum subgenera Bactrophycus and Arthrophycus were considered to be geographically restricted to the northern and southern hemispheres, respectively. Phylogenetic analyses of 19 Sargassum subgenus Bactrophycus species and eight Sargassum subgenus Arthrophycus species, based on a concatenated dataset of the loci ITS-2, cox3 and the rbcL-S spacer, showed that they formed a single clade, with Arthrophycus species nested within Bactrophycus section Halochloa. We merged the two subgenera as subgenus Bactrophycus and transferred "Arthrophycus" species to Sargassum section Halochloa. The genus now includes only the two subgenera, Sargassum and Bactrophycus, and both were found at temperate and subtropical latitudes; only subgenus Sargassum occurred at low latitudes near the equator, whereas subgenus Bactrophycus had an antitropical, disjunct distribution.
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- 2014
12. Characterization of Liagora ceranoides (Liagoraceae, Rhodophyta) on the basis of rbcL sequence analyses and carposporophyte development, including Yoshizakia indopacifica gen. et sp. nov. from the Indo-Pacific region
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Lin, S. M., Huisman, J. M., and Payri, Claude
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rbcL ,Indo-Pacific Oceans ,Rhodophyta ,Molecular phylogeny ,Liagoraceae ,Carposporophyte development ,Yoshizakia indopacifica gen. et sp nov ,Liagora ceranoides - Abstract
Liagora ceranoides, originally described from the Virgin Islands in the Caribbean Sea, has been widely reported from the Indo-Pacific but can easily be confused with other species/ genera of the Liagoraceae in the field. In this study, we examined the vegetative and reproductive morphology of L. ceranoides-like specimens from Taiwan and New Caledonia in the western Pacific Ocean and from Western Australia in the eastern Indian Ocean, and we inferred their phylogenetic relationships along with related genera on the basis of rbcL sequence analyses. The molecular analyses demonstrated that the L. ceranoides-like specimens clustered into two distantly related clades that were characterized reproductively: clade I possessed unfused postfertilization carpogonial-branch cells and slightly diffuse gonimoblasts and clade II (including specimens from the type region of L. ceranoides) had fused postfertilization carpogonial-branch cells and compact gonimoblasts. We therefore proposed the new genus and species Yoshizakia indopacifica to include the specimens identified in clade I. Our phylogenetic analyses indicated that Liagoracean genera with relatively long involucral filaments and unfused carpogonial branches were closely related. Yoshizakia was readily separated from related genera by a combination of the behaviour of the carpogonial-branch cells and the development of involucral filaments and gonimoblasts following presumed fertilization. In addition, our rbcL sequence analyses have confirmed the previously suggested occurrence in the northeast Indian Ocean and the southwest Pacific Ocean of Titanophycus setchellii, Neoizziella asiatica and Macrocarpus perennis, all originally described from the northern or central Pacific Ocean.
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- 2013
13. The genus Melanthalia (Gracilariales, Rhodophyta) : new insights from New Caledonia and New Zealand
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Nelson, W. A., Payri, Claude, Sutherland, J. E., and Dalen, J.
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Gracilariales ,M. vieillardii ,New Caledonia ,rbcL ,M. abscissa ,M. fastigiata ,M. obtusata ,psbA ,Melanthalia ,M. concinna ,New Zealand - Abstract
The Southern Hemisphere red algal genus Melanthalia (Gracilariales) was investigated as part of a study comparing shared elements in the floras of northern New Zealand and southern New Caledonia. Molecular sequence data were obtained from specimens that were collected from throughout New Caledonia and New Zealand and that encompassed the range of morphological variation. Before this study two species were recognised from New Caledonia and a single species from New Zealand. Our results supported the recognition of a single well-delimited monophyletic species that exhibited extreme phenotypic plasticity in New Caledonia, whereas in samples from New Zealand three lineages were identified, with two monophyletic and a third lineage, currently known from a single specimen. Between the New Zealand lineages there was only modest morphological variation but there was genetic differentiation between northern and southern populations. A single species, M. abscissa, was recognised in New Zealand pending further research to clarify species boundaries and enable description of new taxa. On the basis of sequence data, Melanthalia in New Zealand was distinct from Australian species, with a closer relationship shown between New Zealand and New Caledonia than between either of these and Australia. The two New Caledonian species were synonymised, with M. vieillardii having priority.
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- 2013
14. Alert thresholds for monitoring environmental variables : a new approach applied to seagrass beds diversity in New Caledonia
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Van Wynsberge, S., Gilbert, A., Guillemot, Nicolas, Payri, Claude, and Andréfouët, Serge
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Power analysis ,Monitoring ,Indicators ,Alert threshold ,Seagrass - Abstract
Monitoring ecological variables is mandatory to detect abnormal changes in ecosystems. When the studied variables exceed predefined alert thresholds, management actions may be required. In the past, alert thresholds have been typically defined by expert judgments and descriptive statistics. Recently, approaches based on statistical power were also used. In New Caledonia, seagrass monitoring is a priority given their vulnerability to natural and anthropic disturbances. To define a suitable monitoring strategy and alert thresholds, we compared a Percentile Based Approach (PBA) and a sensitivity analysis of power (SAP). Both methods defined statistically relevant alert thresholds, but the SAP approach-was more robust to spatial and temporal variability of seagrass cover. Moreover, this method characterized the sensitivity of threshold values to sampling efforts, a useful knowledge for managers.
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- 2013
15. Diversity of Halimeda (Bryopsidales, Chlorophyta) in New Caledonia : a combined morphological and molecular study
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Dijoux, Laury, Verbruggen, H., Mattio, L., Duong, Nathalie, and Payri, Claude
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revision ,New Caledonia ,rbcL ,taxonomic ,coral reefs ,Halimeda ,tufA ,biodiversity - Abstract
Halimeda is a genus of calcified and segmented green macroalgae in the order Bryopsidales. In New Caledonia, the genus is abundant and represents an important part of the reef flora. Previous studies recorded 19 species that were identified using morphological criteria. The aim of this work was to reassess the diversity of the genus in New Caledonia using morpho-anatomical examinations and molecular analyses of the plastid tufA and rbcL genes. Our results suggest the occurrence of 22 species. Three of these are reported for the first time from New Caledonia: Halimeda kanaloana, H. xishaensis, and an entity resembling H. stuposa. DNA analyses revealed that the species H. fragilis exhibits cryptic or pseudocryptic diversity in New Caledonia. We also show less conclusive evidence for cryptic species within H. taenicola
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- 2012
16. Characterization of Gracilaria vieillardii (Gracilariaceae, Rhodophyta) and molecular phylogeny of foliose species from the western Pacific Ocean, including a description of G. taiwanensis sp. nov
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Lin, S. M., Liu, L. C., and Payri, Claude
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Foliose ,New Caledonia ,Gracilaria taiwanensis sp nov ,rbcL ,Gracilaria vieillardii ,Taiwan ,Western Pacific Ocean ,Molecular phylogeny ,Carposporophyte development - Abstract
Gracilaria vieillardii has been widely reported from the western Pacific Ocean; however, these records remained provisional due to the absence of morphological details for material from the type locality, New Caledonia. To clarify the taxonomic position of G. 'vieillardii' from Taiwan and the interspecific relationships of the foliose Gracilaria species from the western Pacific Ocean, we used rbcL sequences and inferred their molecular phylogeny along with that of other foliose species from around the world. Foliose species with textorii-type spermatangial conceptacles, collected from the western Pacific Ocean, were analyzed here along with foliose species from South Africa. These formed a natural assemblage. In contrast, those foliose species with textorii-type spermatangial conceptacles, which were collected from the tropical Atlantic Ocean, did not form a monophyletic clade. We described Gracilaria taiwanensis sp. nov., based upon a foliose species with marginal teeth, that was previously recorded from Taiwan as G. vieillardii Our molecular analyses indicated that G. taiwanensis was sister to the clade of G. vieillardii from the type locality, New Caledonia; however, they differed by 28 base pairs among 1390 aligned nucleotides of the rbcL gene. Gracilaria taiwanensis was characterized by its palmate, prostrate thallus and thicker cystocarp floor (180-300 mu m thick). In contrast, G. vieillardii possessed bushy, slightly prostrate thalli, and the cystocarp floor was not as thick (100-150 mu m thick).
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- 2012
17. 190 years of Sargassum taxonomy, facing the advent of DNA phylogenies
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Mattio, Lydiane and Payri, Claude
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Systematic ,Taxonomic review ,DNA markers ,Section ,Fucales ,Classification - Abstract
Sargassum C. Agardh is one of the morphologically most complex phaeophyceaen genera and represents the most species-rich genus of the brown algal order Fucales Bory de Saint-Vincent (Phaeophyceae). The genus' classification system dates back to the 19th century and is based on observed differences in macro-morphological characters. Those morphological characters may display important variation within individual species, and several authors have linked the taxonomic complexity of the genus to its highly polymorphic nature and phenotypic plasticity. Among the large choice of existing species and subspecies epithets (about 1000), identifying taxa accurately is a difficult task, often relying on authors' interpretation of short Latin diagnoses or descriptions published in local Floras. Recently, the study of individual species' morphological range and DNA phylogenies underlined inconsistencies within low taxonomic levels (sections, subsections, series and species groups). Results highlighted the weak taxonomic value of traditional characters used to classify species, and pointed out significant taxonomic issues. The four Sargassum subgenera (S. subgen. Arthrophycus, Bactrophycus, Sargassum and Phyllotrichia) are now subdivided into a total of 12 sections and further subdivisions were abandoned. Two possible new sections need to be assessed. In the present paper, we raise the hypothesis that S. subgen. Arthrophycus could be merged to S. subgen. Bactrophycus, and that S. subgen. Phyllotrichia could be transferred to the recently reinstated genus Sargassopsis Trevisan. We also propose that two sections of the S. subgen. Bactrophycus: S. sect. Halochloa and Repentia be merged. A summary of the actual classification is given along with an identification key for Sargassum subdivisions.
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- 2011
18. Evolutionary history of the Corallinales (Corallinophycidae, Rhodophyta) inferred from nuclear, plastidial and mitochonclrial genomes
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Bittner, L., Payri, Claude, Maneveldt, G. W., Couloux, A., Cruaud, C., de Reviers, B., and Le Gall, L.
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COI ,SSU rDNA ,LSU rDNA ,Corallinales ,Porolithon ,psbA ,Phylogeny ,Mastophoroideae - Abstract
Systematics of the red algal order Corallinales has a long and convoluted history. In the present study, molecular approaches were used to assess the phylogenetic relationships based on the analyses of two datasets: a large dataset of SSU sequences including mainly sequences from GenBank; and a combined dataset including four molecular markers (two nuclear: SSU, LSU; one plastidial: psbA; and one mitochondrial: COI). Phylogenetic analyses of both datasets re-affirmed the monophyly of the Corallinales as well as the two families (Corallinaceae and Hapalidiaceae) currently recognized within the order. Three of the four subfamilies of the Corallinaceae (Corallinoideae, Lithophylloideae, Metagoniolithoideae) were also resolved as a monophyletic lineage whereas members of the Mastophoroideae were resolved as four distinct lineages. We therefore propose to restrict the Mastophoroideae to the genera Mastophora, Metamastophora, and possibly Lithoporella in the aim of rendering this subfamily monophyletic. In addition, our phylogenies resolved the genus Hydrolithon in two unrelated lineages, one containing the generitype Hydrolithon reinboldii and the second containing Hydrolithon onkodes, which used to be the generitype of the now defunct genus Porolithon. We therefore propose to resurrect the genus Porolithon for the second lineage encompassing those species with primarily monomerous thalli, and trichocyte arrangements in large pustulate horizontal rows. Moreover, our phylogenetic analyses revealed the presence of cryptic diversity in several taxi, shedding light on the need for further studies to better circumscribe species frontiers within the diverse order Corallinales, especially in the genera Mesophyllum and Neogoniolithon.
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- 2011
19. Use of habitats as surrogates of biodiversity for efficient coral reef conservation planning in Pacific Ocean Islands
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Dalleau, Mayeul, Andréfouët, Serge, Wabnitz, C. C. C., Payri, Claude, Wantiez, L., Pichon, M., Friedman, K., Vigliola, Laurent, and Benzoni, F.
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remote sensing ,marine protected area ,congruence ,accumulation curves ,Wallis ,biodiversity surrogacy ,Millennium Coral Reef Mapping Project ,richness - Abstract
Marine protected areas (MPAs) have been highlighted as a means toward effective conservation of coral reefs. New strategies are required to more effectively select MPA locations and increase the pace of their implementation. Many criteria exist to design MPA networks, but generally, it is recommended that networks conserve a diversity of species selected for, among other attributes, their representativeness, rarity, or endemicity. Because knowledge of species' spatial distribution remains scarce, efficient surrogates are urgently needed. We used five different levels of habitat maps and six spatial scales of analysis to identify under which circumstances habitat data used to design MPA networks for Wallis Island provided better representation of species than random choice alone. Protected-area site selections were derived from a rarity-complementarity algorithm. Habitat surrogacy was tested for commercial fish species, all fish species, commercially harvested invertebrates, corals, and algae species. Efficiency of habitat surrogacy varied by species group, type of habitat map, and spatial scale of analysis. Maps with the highest habitat thematic complexity provided better surrogates than simpler maps and were more robust to changes in spatial scales. Surrogates were most efficient for commercial fishes, corals, and algae but not for commercial invertebrates. Conversely, other measurements of species-habitat associations, such as richness congruence and composition similarities provided weak results. We provide, in part, a habitat-mapping methodology for designation of MPAs for Pacific Ocean islands that are characterized by habitat zonations similar to Wallis. Given the increasing availability and affordability of space-borne imagery to map habitats, our approach could appreciably facilitate and improve current approaches to coral reef conservation and enhance MPA implementation.
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- 2010
20. Four new species of Rhodophyceae from Fiji, Polynesia and Vanuatu, South Pacific
- Author
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N'Yeurt, Antoine and Payri, Claude
- Subjects
new species ,South Pacific ,taxonomy ,Chondria bullata ,Meristotheca peltata ,Halymenia nukuhivensis ,Rhodophyceae ,Jania articulata - Abstract
Four new species of Rhodophyceae are described from the South Pacific, with type localities in Fiji, French Polynesia and Vanuatu. Chondria bullata from the Tuamotus (French Polynesia), Vanuatu, Palmerston Atoll (Cook Islands) and Fiji is unique owing to its non-constricted axes with markedly protruding, bubble-like cortical cells. Halymenia nukuhivensis, from the Marquesas Islands in French Polynesia, is distinguished from others in the genus by its dichotomous, papery blades issued from a strap-shaped basal region, and the equal proportion of anti-clinal, periclinal and oblique filaments in its medullary layer. Jania articulata, so far known only from the Tuamotus in French Polynesia and Manihiki in the Northern Cook Islands, superficially resembles the genus Amphiroa with its articulated branches with numerous genicula between successive dichotomies, and its large axis diameter. Meristotheca peltata from the Fiji Islands is unique among the genus by its distinctly peltate, erect habit. The recent high number of newly described species from the South Pacific region emphasizes the need for more in-depth surveys, particularly in deeper outer reef slope habitats, which remain for the most part unexplored and could yield particularly interesting new taxa or distributional records.
- Published
- 2009
21. Pseudocodium mucronatum, a new species from New Caledonia, and an analysis of the evolution of climatic preferences in the genus (Bryopsidales, Chlorophyta)
- Author
-
Payri, Claude and Verbruggen, H.
- Subjects
phylogenetics ,taxonomy ,climatic affinities ,Bryopsidales ,evolution ,morphology ,macroecology ,molecular ,Pseudocodium mucronatum - Abstract
A new species, Pseudocodium mucronatum, is described from the Chesterfield platform off the west coast of New Caledonia. The species differs from its congeners in having mucronate utricules. A phylogenetic analysis of rbcL and tufA sequences showed that P. mucronatum is most closely associated with P. natalense De Clerck, Coppejans et Verbruggen and P. devriesii Weber Bosse, with which it shares compressed axes, depressed apices, and plastids in the utricles and the medullar siphons. We studied the evolution of climatic and ecological preferences in the genus using an interdisciplinary approach consisting of relaxed molecular clock analysis, extraction of macroecological data from satellite imagery in a geographic information system (GIS) framework, and ancestral character state estimation. It was shown that the genus originated in tropical waters during the Early Mesozoic. Whereas the P. floridanum-okinawense lineage remained tropical, the lineage including P. natalense, P. devriesii, and P. mucronatum gradually invaded more temperate waters during Cenozoic times. Except for P. devriesii, which occurs in shallow and intertidal habitats, all Pseudocodium species grow in deep-water habitats, and this ecological preference appears to be ancestral.
- Published
- 2009
22. Taxonomic revision and geographic distribution of the subgenus Sargassum (fucales, phaeophyceae) in the western and central pacific islands based on morphological and molecular analyses
- Author
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Mattio, Lydiane, Payri, Claude, and Verlaque, M.
- Subjects
cox3 ,taxonomy ,rbcLS ,Vanuatu ,section Polycystae ,Solomon Islands ,Fiji ,DNA phylogeny ,Wallis ,ITS-2 - Abstract
The species diversity of the subgenus Sargassum was reassessed for the southwestern Pacific with special focus on the Solomon Islands, Vanuatu, Fiji, and Wallis. Five taxa were recognized on the basis of morphological characters and corroborated by DNA analyses of the nuclear internal transcribed spacer 2 (ITS-2), chloroplastic partial rbcLS-operon, and mitochondrial cox3. Based on the study of diagnoses and type specimens, four taxa were identified to S. polyphyllum J. Agardh, S. polycystum C. Agardh, S. aquifolium (Turner) C. Agardh, and S. ilicifolium (Turner) C. Agardh, while one taxon remained unidentified. We present a key for identification that includes detailed descriptions of the species and illustrations of their morphological variability. In light of our findings, we propose to consider several new synonymies for S. aquifolium, S. ilicifolium, S. polycystum, and S. polyphyllum. We also include a review of Sargassum floras from Samoa, Tonga, and Nauru and discuss species distribution in the southwest and central Pacific. Finally, DNA phylogenies pointed to the polyphyly of section Acanthocarpicae and underlined the need for a new section in which to place S. polycystum, S. herporhizum Setch. et N. L. Gardner, and S. stolonifolium Phang et T. Yoshida. The new section Polycystae Mattio et Payri is described to fit species of the subgenus Sargassum with stolon-like branches.
- Published
- 2009
23. Taxonomic revision of Sargassum species (fucales, phaeophyceae) from New Caledonia based on morphological and molecular analyses
- Author
-
Mattio, Lydiane and Payri, Claude
- Subjects
cox3 ,taxonomy ,Sargassum turbinarioides ,Phyllotrichia ,rbcLS ,endemic ,DNA phylogeny ,biogeography ,ITS-2 - Abstract
Sargassum C. Agardh (1820) is a taxonomically difficult genus distributed worldwide and reported as the most species-rich genus of the Fucales. It is especially abundant in the Pacific where decreasing species richness is reported to occur from west to east. New Caledonia has been recognized as one of the hotspots of Sargassum diversity; however, species lists available for this region are old and incomplete and have not yet been updated with regard to the latest taxonomic revisions published. This study aimed at revising Sargassum diversity in New Caledonia and to assess its geographic affinities with neighboring Pacific regions. We used combined morphological and DNA analyses on new collections and examined numerous type specimens. Although 45 taxa have been listed in the literature, most of them have been either transferred to synonymy since or misidentified, and in this study, only 12 taxa were recognized as occurring in New Caledonia. They belong to the subgenus Sargassum sect. Binderianae (Grunow) Mattio et Payri (2), sect. Ilicifoliae (J. Agardh) Mattio et Payri (2), sect. Polycystae Mattio et Payri. (1), sect. Sargassum (4), sect. Zygocarpicae (J. Agardh) Setch. (2), and subgenus Phyllotrichia (Aresh.) J. Agardh (1). New Caledonian Sargassum flora appeared as the second richest in the region after the Pacific coast of Australia, with which it has shown high similarity, and shared species with all neighboring regions. One species, S. turbinarioides Grunow, is considered as endemic to New Caledonia. The low genetic diversity detected among several polymorphic species belonging to sect. Sargassum is also discussed.
- Published
- 2009
24. Sebdenia cerebriformis sp. nov (Sebdeniaceae, Sebdeniales) from the south and western Pacific Ocean
- Author
-
N' Yeurt, Antoine and Payri, Claude
- Abstract
A new species of red alga, Sebdenia cerebriformis N'Yeurt et Payri sp. nov. (Sebdeniaceae, Sebdeniales), is described from various localities in the south and western Pacific including Fiji, New Caledonia, the Solomon Islands, Vanuatu, and Indonesia (Java Sea). The new species is characterized by a ruffled thallus with multiple perennial stipitate holdfasts, large conspicuous inner cortical stellate cells, and a lax filamentous medulla.
- Published
- 2008
25. Diversity, biomass and distribution pattern of Sargassum beds in the South West lagoon of New Caledonia (South Pacific)
- Author
-
Mattio, L., Dirberg, G., Payri, Claude, and Andréfouët, Serge
- Subjects
Habitat management ,Sargassaceae ,Coral reef ,Remote sensing ,Large brown algae - Abstract
Sargassum (Phaeophyceae, Fucales) is a genus of worldwide distribution recently recognised to proliferate in several regions of the South Pacific. In New Caledonia, species of this genus naturally structure one of the major lagoon habitats but their extent, composition and biomass remain largely unknown. To fill these gaps in our knowledge over large areas, we applied a combination of remote sensing and in situ methods applied to the Neo Caledonian South West Lagoon. Space borne high resolution Landsat (30-m resolution) and Quickbird (2.4-m resolution) images of the Neo Caledonian South West lagoon were used to estimate the spatial extent of the different beds of interest. Species composition was determined for 11 Sargassum beds and seasonal variations were investigated for four representative beds over an 18 month period using quadrats and transects. Relationships between surface cover and biomass were estimated from seasonal field data sets. Finally, four methods requiring variable levels of sampling effort were designed to estimate the total biomass at the scale of each bed, considering (or not) the specific composition, and spatial and temporal variations. Seven Sargassaceae species were identified. Mean surface cover (24.4-51.6%) and total biomass [3.4-1,461.9 t dry matter (DM)] varied widely between beds. Overall, biomass temporal variations were not significantly different, but species-level variations seemed to be bed-specific. The extent of the 11 beds was 9 km(2); their total biomass was estimated and compared using each of the four methods, and the most precise method provided an estimate of 2,900 t DM. This study demonstrates a way of characterising Sargassum beds, efficiently and on a large scale, using a combination of remotely sensed and in situ data. These methods should be useful for possible future biomonitoring of Sargassum beds in New Caledonia, and in other areas worldwide.
- Published
- 2008
26. Taxonomic revison of Sargassum (Fucales, Phaeophyceae) from French Polynesia based on morphological and molecular analyses
- Author
-
Mattio, Lydiane, Payri, Claude, and Stiger-Pouvreau, V.
- Subjects
cox3 ,rbcLS ,Sargassum ,ITS2 ,French Polynesia ,biogeography ,molecular phylogeny ,taxonomic revision - Abstract
An assessment of Sargassum in French Polynesia was done through the critical revision of the literature, type specimens, and specimens from type localities. Sargassum samples were newly collected, and four morphotypes were identified on the basis of morphological characters. Molecular analysis of the nuclear ITS2, chloroplastic partial rbcLS, and mitochondrial cox3 markers generated two clades and confirmed the recent divergence suspected between closely related species. Although 18 different epithets have been attributed to French Polynesian Sargassum since 1828, only three species are considered valid in this study. Most of these species were transferred to S. pacificum Bory, the only species present in the Society Archipelago, while S. obtusifolium J. Agardh was restricted to the Austral Archipelago, and S. echinocarpum J. Agardh was confirmed for the Austral and Gambier Archipelagos. A morphological identification key is provided, along with descriptions and illustrations for each polymorphic species. Moreover, the study of several regional collections underlined similar and low specific diversity among Sargassum populations in the southeastern Pacific. As a result of this study, we propose that S. bacciferum J. Agardh var. latiuscula Grunow, S. bisserula f. pacifica Grunow, S. boraborense (Grunow) Setch., S. mangarevense (Grunow) Setch., S. sociale (Grunow) Setch., and S. tahitense Grunow be considered as heterotypic synonyms of S. pacificum. Sargassum skottsbergii Sjostedt, S. hawaiiensis Doty et Newhouse, S. divaricatum var. chilensis Grunow, S. obtusifolium J. Agardh f. chamberlainii Grunow, and S. obtusifolium J. Agardh f. lendigeroides Grunow are further regarded as heterotypic synonyms of S. obtusifolium.
- Published
- 2008
27. Grammephora peyssonnelioides gen. et sp nov (Rhodophyta, Rhodymeniaceae) from the Solomon Islands, South Pacific
- Author
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N'Yeurt, Antoine and Payri, Claude
- Subjects
new species ,reproduction ,taxonomy ,morphology ,Rhodophyta ,Solomon Islands ,new genus ,Rhodymeniaceae ,Grammephora peyssonnelioides gen. et sp nov - Abstract
A new genus and species of red alga in the Rhodymeniaceae, Grammephora peyssonnelioides, is described from both shallow and deepwater habitats in the Solomon Islands, South Pacific. The new genus and species is characterized by prostrate overlapping lobes with a strongly cartilaginous flexible texture, distinct surface linear markings perpendicular to the growing margins, and a compact three to four celled medulla of relatively small refractive cells. Tetrasporangia are elongate and decussately divided, and occur in large scattered dorsal surface sori. Cystocarps are prominent and conical, on the dorsal surface of the blade, with a network of nutritive filaments and basal nutritive tissue around the suspended, centrally located carposporophyte, with all gonimoblast initials becoming carposporangia. The columnar fusion cell is uniquely crowned by a ring of discoid cells of nonalgal origin.
- Published
- 2007
28. Extraordinarily high giant clam density under protection in Tatakoto atoll (Eastern Tuamotu archipelago, French Polynesia)
- Author
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Gilbert, Antoine, Yan, L., Remoissenet, G., Andrefouët, Serge, Payri, Claude, and Chancerelle, Y.
- Published
- 2005
29. Benthic algal and seagrass communities in Baa Atoll, Maldives
- Author
-
Payri, Claude, N'Yeurt, A.D.R., Mattio, L., and Andréfouët, Serge (ed.)
- Subjects
MACROPHYTE MARIN ,INVENTAIRE DE VEGETATION ,DIVERSITE SPECIFIQUE ,DISTRIBUTION SPATIALE ,ALGUE MARINE ,ABONDANCE
30. Molecular diversity of the Caulerpa racemosa-Caulerpa peltata complex (Caulerpaceae, Bryopsidales) in New Caledonia, with new Australasian records for C. racemosa var. cylindracea
- Author
-
Sauvage, Thomas, Payri, Claude, Draisma, Stefano G. A., Reine, Willem F. Prud Homme, Heroen Verbruggen, Belton, Gareth S., Gurgel, C. Frederico D., Gabriel, Daniela, Sherwood, Alison R., and Fredericq, Suzanne
31. Taxonomic revision of Sargassum sect. Acanthocarpicae (Fucales, Phaeophyceae)
- Author
-
Lydiane Mattio, Payri, Claude E., Verlaque, Marc, and Reviers, Bruno
- Subjects
Acanthocarpicae ,Ilicifoliae ,Binderianae ,molecular phylogeny ,taxonomic revision ,Pacific - Abstract
Sargassum is one of the morphologically most complex phaeophyceaen genera, and is divided into subgenera, sections, subsections, series and species groups based on highly polymorphic characters. Recent DNA analyses have highlighted incongruities in the traditional classification of the genus and especially within Sargassum subg. Sargassum sect. Acanthocalpicae. Our goal was to re-assess the relationships among taxa currently attributed to this section in the Pacific basin. We undertook the taxonomic study in two main steps: (I) the morphological examination of large collections from inter-tropical Pacific islands and type specimens from worldwide localities; and (2) DNA analyses using a set of three markers (ITS-2, partial rbcLS-operon, cox3). Morphological and DNA analyses confirmed that S. sect. Acanthocarpicae is based on unsuitable morphological characters and is not monophyletic. On the basis of this study, we propose (1) abandoning subsections within S. sect. Acanthocarpicae; (2) synonymization of S. sect. Acanthocarpicae and sect. Malacocarpicae with sect. Sargassum; and (3) the elevation of S. ser. Ilicifoliae and ser. Binderianae to sectional rank as well as their re-description according to new sets of morphological characters.
32. MATCHING NAMES AND CLADES IN THE BROWN ALGAL GENUS LOBOPHORA (DICTYOTALES, PHAEOPHYCEAE): AN EFFORT TO INTEGRATE TYPE SPECIMENS IN MODERN TAXONOMY
- Author
-
Vieira, Christophe, Camacho, Olga, Wynne, Michael J., Lydiane Mattio, Anderson, Robert J., Bolton, John J., Sanson, Marta, D Hondt, Sofie, Fredericq, Suzanne, Payri, Claude, and Clerck, Olivier
33. Molecular diversity of the Caulerpa racemosa - Caulerpa peltata complex (Caulerpaceae, Bryopsidales) in New Caledonia, with new Australasian records for C. racemosa var. cylindracea. (vol 52, pg 6, 2013)
- Author
-
Sauvage, Thomas, Payri, Claude, Draisma, Stefano G. A., Reine, Willem F. Prud Homme, Verbruggen, Heroen, Belton, Gareth S., Carlos Frederico Deluqui Gurgel, Gabriel, Daniela, Sherwood, Alison R., and Fredericq, Suzanne
34. Vulnerability of mangroves, seagrasses and intertidal flats in the tropical Pacific to climate change
- Author
-
Waycott, Michelle, Leonard McKenzie, Mellors, Jane E., Ellison, Joanna C., Sheaves, Marcus T., Collier, Catherine, Schwarz, Anne-Maree, Webb, Arthur, Johnson, Johanna E., and Payri, Claude E.
35. Substances naturelles : des trésors cachés
- Author
-
Sylvain PETEK, Payri, Claude (ed.), and Moatti, Jean-Paul (pref.)
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