1. Complex MHC Class I Gene Transcription Profiles and Their Functional Impact in Orangutans
- Author
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de Groot, Natasja G, Heijmans, Corrine M C, van der Wiel, Marit K H, Blokhuis, Jeroen H, Mulder, Arend, Guethlein, Lisbeth A, Doxiadis, Gaby G M, Claas, Frans H J, Parham, Peter, Bontrop, Ronald E, Theoretical Biology and Bioinformatics, Sub Theoretical Biology, Theoretical Biology and Bioinformatics, and Sub Theoretical Biology
- Subjects
0301 basic medicine ,Pongo abelii ,Evolution ,Immunology ,Genes, MHC Class I ,chemical and pharmacologic phenomena ,Biology ,Major histocompatibility complex ,Research Support ,Article ,MHC Class I ,Evolution, Molecular ,03 medical and health sciences ,Pongo pygmaeus ,Gene duplication ,MHC class I ,Immunology and Allergy ,Animals ,Humans ,Amino Acid Sequence ,Allele ,Non-U.S. Gov't ,Gene ,Phylogeny ,Genetics ,Reverse Transcriptase Polymerase Chain Reaction ,Research Support, Non-U.S. Gov't ,Haplotype ,MHC Class I Gene ,Molecular ,High-Throughput Nucleotide Sequencing ,Allotype ,030104 developmental biology ,Genes ,Haplotypes ,biology.protein ,Transcriptome - Abstract
MHC haplotypes of humans and the African great ape species have one copy of the MHC-A, -B, and -C genes. In contrast, MHC haplotypes of orangutans, the Asian great ape species, exhibit variation in the number of gene copies. An in-depth analysis of the MHC class I gene repertoire in the two orangutan species, Pongo abelii and Pongo pygmaeus, is presented in this article. This analysis involved Sanger and next-generation sequencing methodologies, revealing diverse and complicated transcription profiles for orangutan MHC-A, -B, and -C. Thirty-five previously unreported MHC class I alleles are described. The data demonstrate that each orangutan MHC haplotype has one copy of the MHC-A gene, and that the MHC-B region has been subject to duplication, giving rise to at least three MHC-B genes. The MHC-B*03 and -B*08 lineages of alleles each account for a separate MHC-B gene. All MHC-B*08 allotypes have the C1-epitope motif recognized by killer cell Ig-like receptor. At least one other MHC-B gene is present, pointing to MHC-B alleles that are not B*03 or B*08. The MHC-C gene is present only on some haplotypes, and each MHC-C allotype has the C1-epitope. The transcription profiles demonstrate that MHC-A alleles are highly transcribed, whereas MHC-C alleles, when present, are transcribed at very low levels. The MHC-B alleles are transcribed to a variable extent and over a wide range. For those orangutan MHC class I allotypes that are detected by human monoclonal anti-HLA class I Abs, the level of cell-surface expression of proteins correlates with the level of transcription of the allele.
- Published
- 2015