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(Abridged) We present a systematic investigation of physical conditions and elemental abundances in four optically thick Lyman-limit systems (LLSs) at $z=0.36-0.6$ discovered within the Cosmic Ultraviolet Baryon Survey (CUBS). CUBS LLSs exhibit multi-component kinematic structure and a complex mix of multiphase gas, with associated metal transitions from multiple ionization states that span several hundred km/s in line-of-sight velocity. Specifically, higher column density components (log N(HI)>16) in all four absorbers comprise dynamically cool gas with $\langle T \rangle =(2\pm1) \times10^4\,$K and modest non-thermal broadening of $5\pm3\,$ km/s. The high quality of the QSO absorption spectra allows us to infer the physical conditions of the gas, using a detailed ionization modeling that takes into account the resolved component structures of HI and metal transitions. The range of inferred gas densities indicates that these absorbers consist of spatially compact clouds with a median line-of-sight thickness of $160^{+140}_{-50}$ pc. While obtaining robust metallicity constraints for the low-density, highly ionized phase remains challenging due to the uncertain N(HI), we demonstrate that the cool-phase gas in LLSs has a median metallicity of $\mathrm{[��/H]_{1/2}}=-0.7^{+0.1}_{-0.2}$, with a 16-84 percentile range of $\mathrm{[��/H]}=(-1.3,-0.1)$. Furthermore, the wide range of inferred elemental abundance ratios ($\mathrm{[C/��]}$, $\mathrm{[N/��]}$, and $\mathrm{[Fe/��]}$) indicate a diversity of chemical enrichment histories. Combining the absorption data with deep galaxy survey data characterizing the galaxy environment of these absorbers, we discuss the physical connection between star-forming regions in galaxies and diffuse gas associated with optically thick absorption systems in the $z, Accepted for publication in MNRAS after a minor revision. 18 pages, 11 figures, and a nine-page Appendix with four additional figures

We present initial results from the Cosmic Ultraviolet Baryon Survey (CUBS). CUBS is designed to map diffuse baryonic structures at redshift z~ 17.2 over a total redshift survey pathlength of dz=9.3, and a number density of n(z)=0.43 (-0.18, +0.26). Considering all absorbers with log N(HI)/cm^-2 > 16.5 leads to n(z)=1.08 (-0.25, +0.31) at z, 26 pages, 14 figures, MNRAS in press

We introduce LATIS, the Ly$��$ Tomography IMACS Survey, a spectroscopic survey at Magellan designed to map the z=2.2-2.8 intergalactic medium (IGM) in three dimensions by observing the Ly$��$ forest in the spectra of galaxies and QSOs. Within an area of 1.7 deg${}^2$, we will observe approximately half of $\gtrsim L^*$ galaxies at z=2.2-3.2 for typically 12 hours, providing a dense network of sightlines piercing the IGM with an average transverse separation of 2.5 $h^{-1}$ comoving Mpc (1 physical Mpc). At these scales, the opacity of the IGM is expected to be closely related to the dark matter density, and LATIS will therefore map the density field in the $z \sim 2.5$ universe at $\sim$Mpc resolution over the largest volume to date. Ultimately LATIS will produce approximately 3800 spectra of z=2.2-3.2 galaxies that probe the IGM within a volume of $4 \times 10^6 h^{-3}$ Mpc${}^3$, large enough to contain a representative sample of structures from protoclusters to large voids. Observations are already complete over one-third of the survey area. In this paper, we describe the survey design and execution. We present the largest IGM tomographic maps at comparable resolution yet made. We show that the recovered matter overdensities are broadly consistent with cosmological expectations based on realistic mock surveys, that they correspond to galaxy overdensities, and that we can recover structures identified using other tracers. LATIS is conducted in Canada-France-Hawaii Telescope Legacy Survey fields, including COSMOS. Coupling the LATIS tomographic maps with the rich data sets collected in these fields will enable novel studies of environment-dependent galaxy evolution and the galaxy-IGM connection at cosmic noon., accepted to ApJ; Fig. 26 contains animated rendering of the IGM maps

Since z~1, the stellar mass density locked in low mass groups and clusters has grown by a factor of ~8. Here we make the first statistical measurements of the stellar mass content of low mass X-ray groups at 0.5, 6 pages, 4 figures, accepted to ApJ Letters

We present the data release of the Gemini-South GMOS spectroscopy in the fields of 11 galaxy groups at $0.850$ per cent complete for galaxies within the virial radius, and with stellar mass $M_{\rm star}>10^{10.3}M_\odot$. Including galaxies with photometric redshifts we have an effective sample size of $\sim 400$ galaxies within the virial radii of these groups. We present group velocity dispersions, dynamical and stellar masses. Combining with the GCLASS sample of more massive clusters at the same redshift we find the total stellar mass is strongly correlated with the dynamical mass, with $\log{M_{200}}=1.20\left(\log{M_{\rm star}}-12\right)+14.07$. This stellar fraction of $~\sim 1$ per cent is lower than predicted by some halo occupation distribution models, though the weak dependence on halo mass is in good agreement. Most groups have an easily identifiable most massive galaxy (MMG) near the centre of the galaxy distribution, and we present the spectroscopic properties and surface brightness fits to these galaxies. The total stellar mass distribution in the groups, excluding the MMG, compares well with an NFW profile with concentration $4$, for galaxies beyond $\sim 0.2R_{200}$. This is more concentrated than the number density distribution, demonstrating that there is some mass segregation., Accepted for publication in MNRAS. The appendix is omitted due to large figures. The full version will be available from the MNRAS website and from http://quixote.uwaterloo.ca/~mbalogh/papers/GEEC2_data.pdf. Long data tables are available from MNRAS or by contacting the first author

We use Chandra data to study the incidence and properties of Active Galactic Nuclei (AGN) in 16 intermediate redshift ($0.5 < z < 1.1$) X-ray-selected galaxy groups in the Chandra Deep Field-South. We measure an AGN fraction of $f(L_{X,H} > 10^{42}; M_R 10^{41}$ erg/s) = 25), we find only 4 emission-line AGN, 3 of which are also X-ray bright. Furthermore, most of the X-ray AGN in our groups are optically-dull (i.e. lack strong emission-lines) similar to those found in low redshift X-ray groups and clusters of galaxies. This contrasts with the AGN population found in low redshift optically-selected groups which are dominated by emission-line AGN. The differences between the optically and X-ray-selected AGN populations in groups are consistent with a scenario where most AGN in the densest environments are currently in a low accretion state., 8 pages, 4 figures, accepted for publication in ApJ

We report the discovery of a transparent sightline at projected distances of �� < 20 kpc to an interacting pair of mature galaxies at z = 0.12. The sightline of the UV-bright quasar PG1522+101 at z = 1.328 passes at �� = 11.5 kpc from the higher-mass galaxy (M_* = 10^10.6 M_Sun) and �� = 20.4 kpc from the lower-mass one (M_* = 10^10.0 M_Sun). The two galaxies are separated by 9 kpc in projected distance and 30 km/s in line-of-sight velocity. Deep optical images reveal tidal features indicative of close interactions. Despite the small projected distances, the quasar sightline shows little absorption associated with the galaxy pair with a total HI column density it no greater than log N(HI) = 13.65. This limiting HI column density is already two orders-of-magnitude less than what is expected from previous halo gas studies. In addition, we detect no heavy-element absorption features associated with the galaxy pair with 3-�� limits of log N(MgII) < 12.2 and log N(OVI) < 13.7. The probability of seeing such little absorption in a sightline passing at a small projected distance from two non-interacting galaxies is 0.2%. The absence of strong absorbers near the close galaxy pair suggests that the cool gas reservoirs of the galaxies have been significantly depleted by the galaxy interaction. These observations therefore underscore the potential impact of galaxy interactions on the gaseous halos around galaxies., MNRAS accepted: 11 pages, 3 figures

We present new absorption-line analysis and new galaxy survey data obtained for the field around PKS0405-123 at z=0.57. Combining previously known OVI absorbers with new identifications in the higher S/N UV spectra obtained with COS, we have established a sample of 7 OVI absorbers and 12 individual components at z=0.0918-0.495 along the sightline toward PKS0405-123. We complement the available UV absorption spectra with galaxy survey data that reach 100% completeness at projected distances rho0.04L* at rho0.3L* at rho13.6 and no detectable OVI absorption features. The Lya-only absorbers serve as a control sample in seeking the discriminating galactic features that result in the observed OVI absorbing gas at large galactic radii. We find a clear distinction in the radial profiles of mean galaxy surface brightness around different absorbers. Specifically, OVI absorbers are found to reside in regions of higher mean surface brightness at rho, 16 pages, 7 figures; accepted to Monthly Notices of the Royal Astronomical Society

The presence of substructure in galaxy groups and clusters is believed to be a sign of recent galaxy accretion and can be used not only to probe the assembly history of these structures, but also the evolution of their member galaxies. Using the Dressler-Shectman (DS) Test, we study substructure in a sample of intermediate redshift (z ~ 0.4) galaxy groups from the Group Environment and Evolution Collaboration (GEEC) group catalog. We find that 4 of the 15 rich GEEC groups, with an average velocity dispersion of ~525 km s-1, are identified as having significant substructure. The identified regions of localized substructure lie on the group outskirts and in some cases appear to be infalling. In a comparison of galaxy properties for the members of groups with and without substructure, we find that the groups with substructure have a significantly higher fraction of blue and star-forming galaxies and a parent colour distribution that resembles that of the field population rather than the overall group population. In addition, we observe correlations between the detection of substructure and other dynamical measures, such as velocity distributions and velocity dispersion profiles. Based on this analysis, we conclude that some galaxy groups contain significant substructure and that these groups have properties and galaxy populations that differ from groups with no detected substructure. These results indicate that the substructure galaxies, which lie preferentially on the group outskirts and could be infalling, do not exhibit signs of environmental effects, since little or no star-formation quenching is observed in these systems., Comment: 21 pages, 13 figures, MNRAS accepted

We present the global group properties of two samples of galaxy groups containing 39 high quality X-ray selected systems and 38 optically (spectroscopically) selected systems in coincident spatial regions at 0.12, Accepted for publication in the Astrophysical Journal (ApJ). 27 pages, 14 figures, 12 tables

We examine the star formation properties of group and field galaxies in two surveys, the Sloan Digital Sky Survey (SDSS; at z ~ 0.08) and the Group Environment and Evolution Collaboration (GEEC; at z ~ 0.4). Using UV imaging from the GALEX space telescope, along with optical and, for GEEC, near infrared photometry, we compare the observed spectral energy distributions to large suites of stellar population synthesis models. This allows us to accurately determine star formation rates and stellar masses. We find that star forming galaxies of all environments undergo a systematic lowering of their star formation rate between z=0.4 and z=0.08 regardless of mass. Nonetheless, the fraction of passive galaxies is higher in groups than the field at both redshifts. Moreover, the difference between the group and field grows with time and is mass-dependent, in the sense the the difference is larger at low masses. However, the star formation properties of star forming galaxies, as measured by their average specific star formation rates, are consistent within the errors in the group and field environment at fixed redshift. The evolution of passive fraction in groups between z=0.4 and z=0 is consistent with a simple accretion model, in which galaxies are environmentally affected 3 Gyrs after falling into a ~ 10E13 Msun group. This long timescale appears to be inconsistent with the need to transform galaxies quickly enough to ensure that star forming galaxies appear similar in both the group and field, as observed., Comment: 19 pages, MNRAS, in press

(Abridged) We present an imaging and spectroscopic survey of galaxies in fields around QSOs HE0226-4110, PKS0405-123, and PG1216+069. The fields are selected to have ultraviolet echelle spectra available, which uncover 195 Lya absorbers and 13 OVI absorbers along the three sightlines. We obtain robust redshifts for 1104 galaxies of rest-frame absolute magnitude M_R-5log h = 14 and OVI absorbers exhibit a comparable clustering amplitude as emission-line dominated galaxies and a factor of ~ 6 weaker amplitude than absorption-line dominated galaxies on co-moving projected distance scales of r_p < 3 h^{-1} Mpc; (2) weak Lya absorbers of log N(HI), 27 journal-style pages, 15 figures; ApJ in press; full-resolution version is available at http://lambda.uchicago.edu/public/tmp/imacs_cm09.pdf

To better understand the mechanism or mechanisms that lead to AGN activity today, we measure the X-ray AGN fraction in a new sample of nearby clusters and examine how it varies with galaxy properties, projected cluster-centric radius, and cluster velocity dispersion. We present new wide-field Chandra X-ray Observatory observations of Abell 85, Abell 754 and the background cluster Abell 89B out to their virial radii. Out of seventeen X-ray sources associated with galaxies in these clusters, we classify seven as X-ray AGN with L_{X,B} > 10^{41} erg/s. Only two of these would be classified as AGN based on their optical spectra. We combine these observations with archival data to create a sample of X-ray AGN from six z < 0.08 clusters and find that 3.4+1.1/-0.8% of M_R < -20 galaxies host X-ray AGN with L_{X,B} > 10^{41} erg/s. We find that more X-ray AGN are detected in more luminous galaxies and attribute this to larger spheriods in more luminous galaxies and increased sensitivity to lower Eddington-rate accretion from black holes in those spheroids. At a given X-ray luminosity limit, more massive black holes can be accreting less efficiently, yet still be detected. If interactions between galaxies are the principal drivers of AGN activity, then the AGN fraction should be higher in lower velocity dispersion clusters and the outskirts of clusters. However, the tendency of the most massive and early-type galaxies to lie in the centers of the richest clusters could dilute such trends. While we find no variation in the AGN fraction with projected cluster-centric radius, we do find that the AGN fraction increases significantly from 2.6+1.0/-0.8% in rich clusters to 10.0+6.2/-4.3% in those with lower velocity dispersions., Accepted by Astrophysical Journal, 17 pages using emulateapj.cls, 10 B & W Figures (degraded): Full resolution paper available at http://www.astronomy.ohio-state.edu/~sivakoff/AGN/XAGN_A85_A754.pdf

We present a study of the distribution of AGN in clusters of galaxies with a uniformly selected, spectroscopically complete sample of 35 AGN in eight clusters at z = 0.06 to 0.31. We find that the 12 AGN with L_X > 10^42 erg/s in galaxies more luminous than a rest-frame M_R < -20 mag are more centrally concentrated than typical cluster galaxies of this luminosity, although these AGN have comparable velocity and substructure distributions to other cluster members. In contrast, a larger sample of 30 cluster AGN with L_X > 10^41 erg/s do not show evidence for greater concentration than inactive members, nor evidence for a different kinematic or substructure distribution. As we do see clear differences in the spatial and kinematic distributions of the blue Butcher-Oemler and red galaxy populations, any difference in the AGN and inactive galaxy population must be less distinct than that between these two pairs of populations. Comparison of the AGN fraction selected via X-ray emission in this study to similarly-selected AGN in the field indicates that the AGN fraction is not significantly lower in clusters, contrary to AGN identified via visible-wavelength emission lines, but similar to the approximately constant radio-selected AGN fraction in clusters and the field. We also find significant evidence for variation between clusters and explore the dependence of cluster AGN fraction on redshift, velocity dispersion, cluster substructure, and Butcher-Oemler fraction. While we see weak evidence for several trends, correlations between these four parameters in our small sample precludes identification of which one(s) most strongly influence the cluster AGN fraction., ApJ accepted, 16 pages, 10 figs, eTable 2 and high-res version available at http://www.astronomy.ohio-state.edu/~martini/professional/publications/index.html Updated to match published version

We present the results of the 2-dimensional XMM-Newton Group Survey (2dXGS), an archival study of nearby galaxy groups. In this paper we consider eleven nearby systems (z, 18 pages, ApJ, 646, 143, 2006

We have completed a spectroscopic survey of X-ray point sources in eight low-redshift clusters of galaxies (0.0510^{41}) ~ 5%. We stress that additional, lower-luminosity AGN are expected to be present in the M_R < -20 mag cluster members. Our data unambiguously demonstrate that cluster galaxies host AGN more frequently than previously expected. Only four of these galaxies have obvious visible-wavelength AGN signatures, even though their X-ray luminosities are too high for their X-ray emission to be due to populations of low-mass X-ray binaries or hot, gaseous halos. We attribute the significant difference in visible and X-ray AGN identification to dilution of low-luminosity AGN spectral signatures by host galaxy starlight and/or obscuration of accretion onto the central, supermassive black hole., Comment: ApJ accepted, 20 pages, 15 figures, emulateapj

We present a pilot study of the clustering properties of Lya absorbers with respect to known galaxies based on 112 Lya absorbers and 482 galaxies identified at z= 14 shows a comparable strength to the galaxy auto-correlation function xi_{gg} on co-moving, projection distance scales < 1 h^{-1} Mpc, while there remains a lack of cross-correlation signal when using only absorption-line dominated galaxies. This signifies a morphology-dependent xi_{ga} and indicates that strong absorbers of log N(HI) >= 14 and emission-line galaxies reside in the same halo population. (2) A maximum-likelihood analysis shows that Lya absorbers of log N(HI) < 13.6 are consistent with being more randomly distributed with respect to known galaxies. Finally, (3) we find based on this single sightline that the amplitude of xi_{ga} does not depend sensitively on N(HI) for strong absorbers of log N(HI) >= 13.6., 5 pages, including 2 figures; to appear in ApJ Letters, the 2005 August 10 issue

As part of a program to study the evolution of active galactic nuclei (AGN) in clusters of galaxies, we present our results for Abell 2104. A deep Chandra observation of this massive, z = 0.154 cluster reveals a significant X-ray point source excess over the expectations of blank fields, including eight X-ray counterparts with R, ApJL Accepted, 12 pages including 3 embedded ps figures. Version with higher resolution figure 1 available at http://www.ociw.edu/~martini/pubs/

We use a sample of 20 poor groups of galaxies to study the low L_x tail of the L_x-sigma relationship. We have obtained redshifts for fainter members and deep X-ray imaging of these groups. We find that the L_x-sigma relationship derived for the rich clusters in the sample of Mushotzky & Scharf (1997) is consistent with the data for our 20 poor groups. However, it is not possible to reach strong conclusions about differences in the L_x-sigma relationship for groups and clusters in general at the present time because of significant differences between various cluster samples., 4 pages, 1 figure. Contribution to "Tracing Cosmic Evolution with Galaxy Clusters" (Sesto2001), ASP Conference Series