2 results on '"Martins, J.M."'
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2. Admixture and breed traceability in European indigenous pig breeds and wild boar using genome-wide SNP data
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Christos Dadousis, Maria Muñoz, Cristina Óvilo, Maria Chiara Fabbri, José Pedro Araújo, Samuele Bovo, Marjeta Čandek Potokar, Rui Charneca, Alessandro Crovetti, Maurizio Gallo, Juan María García-Casco, Danijel Karolyi, Goran Kušec, José Manuel Martins, Marie-José Mercat, Carolina Pugliese, Raquel Quintanilla, Čedomir Radović, Violeta Razmaite, Anisa Ribani, Juliet Riquet, Radomir Savić, Giuseppina Schiavo, Martin Škrlep, Silvia Tinarelli, Graziano Usai, Christoph Zimmer, Luca Fontanesi, Riccardo Bozzi, European Commission, Slovenian Research Agency, Dadousis, Christos [0000-0002-7689-6443], Óvilo, Cristina [0000-0002-5738-8435], Fabbri, Maria Chiara [0000-0002-3224-745X], Araújo, José Pedro [0000-0002-1232-3160], Bovo, Samuele [0000-0002-5712-8211], Potokar, Marjeta Čandek [0000-0003-0231-126X], Charneca, Rui [0000-0002-3597-6746], Crovetti, Alessandro [0000-0002-4052-0794], García-Casco, Juan María [0000-0003-0851-608X], Karolyi, Danijel [0000-0003-0409-9071], Kušec, Goran [0000-0002-2900-4019], Mercat, Marie-José [0000-0002-3087-082X], Pugliese, Carolina [000-0002-3735-8714], Tinarelli, Silvia [0000-0001-8875-5456], Usai, Graziano [0000-0002-6002-2223], Fontanesi, Luca [00000000-0001-7050-3760-0001-7050-3760], Riccardo Bozzi [0000-0001-8854-0834], Dadousis C., Munoz M., Ovilo C., Fabbri M.C., Araujo J.P., Bovo S., Potokar M.C., Charneca R., Crovetti A., Gallo M., Garcia-Casco J.M., Karolyi D., Kusec G., Martins J.M., Mercat M.-J., Pugliese C., Quintanilla R., Radovic C., Razmaite V., Ribani A., Riquet J., Savic R., Schiavo G., Skrlep M., Tinarelli S., Usai G., Zimmer C., Fontanesi L., Bozzi R., Università degli Studi di Firenze = University of Florence (UniFI), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria = National Institute for Agricultural and Food Research and Technology (INIA), Universidade de Évora, Department of Animal Science [Zagreb], Faculty of Agriculture [Zagreb] (UNIZG), University of Zagreb-University of Zagreb, Institut du Porc (IFIP), Institut de Recerca i Tecnologia Agroalimentàries = Institute of Agrifood Research and Technology (IRTA), Génétique Physiologie et Systèmes d'Elevage (GenPhySE ), Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Slovenian Research Agency (grant number P4-0133), European Project: 634476,H2020,H2020-SFS-2014-2,TREASURE(2015), Dadousis, Christos, Óvilo, Cristina, Fabbri, Maria Chiara, Araújo, José Pedro, Bovo, Samuele, Potokar, Marjeta Čandek, Charneca, Rui, Crovetti, Alessandro, García-Casco, Juan María, Karolyi, Danijel, Kušec, Goran, Mercat, Marie-José, Pugliese, Carolina, Tinarelli, Silvia, Usai, Graziano, Fontanesi, Luca, Riccardo Bozzi, Producció Animal, and Genètica i Millora Animal
- Subjects
Pig ,Genome ,[SDV.BA.MVSA]Life Sciences [q-bio]/Animal biology/Veterinary medicine and animal Health ,[SDV.BIO]Life Sciences [q-bio]/Biotechnology ,Multidisciplinary ,Swine ,[SDV.BA]Life Sciences [q-bio]/Animal biology ,Sus scrofa ,SNP ,DAPC ,Admixture ,Polymorphism, Single Nucleotide ,pig ,local breeds ,wild boar ,admixture ,breed traceability ,Plant Breeding ,local pig ,traceability ,[SDV.BA.ZV]Life Sciences [q-bio]/Animal biology/Vertebrate Zoology ,Genomic ,Single Nucleotide Polymorphism ,Animals ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Biological Specimen Banks - Abstract
13 Pág., Preserving diversity of indigenous pig (Sus scrofa) breeds is a key factor to (i) sustain the pork chain (both at local and global scales) including the production of high-quality branded products, (ii) enrich the animal biobanking and (iii) progress conservation policies. Single nucleotide polymorphism (SNP) chips offer the opportunity for whole-genome comparisons among individuals and breeds. Animals from twenty European local pigs breeds, reared in nine countries (Croatia: Black Slavonian, Turopolje; France: Basque, Gascon; Germany: Schwabisch-Hällisches Schwein; Italy: Apulo Calabrese, Casertana, Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda; Lithuania: Indigenous Wattle, White Old Type; Portugal: Alentejana, Bísara; Serbia: Moravka, Swallow-Bellied Mangalitsa; Slovenia: Krškopolje pig; Spain: Iberian, Majorcan Black), and three commercial breeds (Duroc, Landrace and Large White) were sampled and genotyped with the GeneSeek Genomic Profiler (GGP) 70 K HD porcine genotyping chip. A dataset of 51 Wild Boars from nine countries was also added, summing up to 1186 pigs (~ 49 pigs/breed). The aim was to: (i) investigate individual admixture ancestries and (ii) assess breed traceability via discriminant analysis on principal components (DAPC). Albeit the mosaic of shared ancestries found for Nero Siciliano, Sarda and Moravka, admixture analysis indicated independent evolvement for the rest of the breeds. High prediction accuracy of DAPC mark SNP data as a reliable solution for the traceability of breed-specific pig products., This work has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 634476 for the project with acronym TREASURE. The content of this article reflects only the authors’ view and the European Union Agency is not responsible for any use that may be made of the information it contains. MŠ and MČP received core-financing by the Slovenian Research Agency (grant number P4-0133).
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- 2022
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