1,206 results on '"Mark E. Cooper"'
Search Results
2. An Engineered Nanosugar Enables Rapid and Sustained Glucose‐Responsive Insulin Delivery in Diabetic Mice (Adv. Mater. 21/2023)
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Rong Xu, Sukhvir Kaur Bhangu, Karly C. Sourris, Domitilla Vanni, Marc‐Antoine Sani, John A. Karas, Karen Alt, Be'eri Niego, Anukreity Ale, Quinn A. Besford, Brendan Dyett, Joshua Patrick, Irena Carmichael, Jonathan E. Shaw, Frank Caruso, Mark E. Cooper, Christoph E. Hagemeyer, and Francesca Cavalieri
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science - Published
- 2023
3. SGLT2 inhibitors for patients with type 2 diabetes and CKD: a narrative review
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Merlin C. Thomas, Brendon L Neuen, Stephen M Twigg, Mark E. Cooper, and Sunil V Badve
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Endocrinology ,Endocrinology, Diabetes and Metabolism ,Internal Medicine - Abstract
Sodium‐glucose co-transporter 2 (SGLT2) inhibitors have recently emerged as an effective means to protect kidney function in people with type 2 diabetes and chronic kidney disease (CKD). In this review, we explore the role of SGLT2 inhibition in these individuals. SGLT2 inhibitors specifically act to inhibit sodium and glucose reabsorption in the early proximal tubule of the renal nephron. Although originally developed as glucose-lowering agents through their ability to induce glycosuria, it became apparent in cardiovascular outcome trials that the trajectory of kidney function decline was significantly slowed and the incidence of serious falls in kidney function was reduced in participants receiving an SGLT2 inhibitor. These observations have recently led to specific outcome trials in participants with CKD, including DAPA-CKD, CREDENCE and EMPA-KIDNEY, and real-world studies, like CVD-REAL-3, that have confirmed the observation of kidney benefits in this setting. In response, recent KDIGO Guidelines have recommended the use of SGLT2 inhibitors as first line therapy in patients with CKD, alongside statins, renin–angiotensin–aldosterone system inhibitors and multifactorial risk factor management as indicated. However, SGLT2 inhibitors remain significantly underutilized in the setting of CKD. Indeed, an inertia paradox exists, with patients with more severe disease less likely to receive an SGLT2 inhibitor. Concerns regarding safety appear unfounded, as acute kidney injury, hyperkalaemia, major acute cardiovascular events and cardiac death in patients with CKD appear to be lower following SGLT2 inhibition. The first-in-class indication of dapagliflozin for CKD may begin a new approach to managing kidney disease in type 2 diabetes.
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- 2023
4. Data from The Association of High-Density Lipoprotein Cholesterol with Cancer Incidence in Type II Diabetes: A Case of Reverse Causality?
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Sophia Zoungas, Mark E. Cooper, Michel Marre, Neil R. Poulter, Giuseppe Mancia, Mark Woodward, John Chalmers, Martin K.C. Ng, and Jamie Morton
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Background: Low high-density lipoprotein cholesterol (HDL-C) and type II diabetes are associated with an increased risk for cancer. Patients with type II diabetes typically have low HDL-C; however, the association between HDL-C and cancer has not been examined in this population.Methods: A total of 11,140 patients with type II diabetes were followed for a median of 5 years. Cox proportional hazard models were used to assess the association between baseline HDL-C and risk of cancer incidence and cancer death, with adjustments made for potential confounders. To explore the possibility of reverse causation, analyses were repeated for the cancers occurring in the first and second halves of follow-up.Results: Six hundred and ninety-nine patients developed cancer, with 48% occurring within the first half of follow-up. For every 0.4 mmol/L lower baseline HDL-C, there was a 16% higher risk of cancer [HR 1.16; 95% confidence interval (CI), 1.06–1.28; P = 0.0008] and cancer death (HR 1.16; 95% CI, 1.01–1.32; P = 0.03). After adjustment for confounding, the higher risk remained significant for cancer (adjusted HR 1.10; 95% CI, 1.00–1.22; P = 0.05) but not for cancer death (adjusted HR 1.08; 95% CI, 0.93–1.25; P = 0.31). The association was driven by cancers occurring within the first half of follow-up (adjusted HR 1.22; 95% CI, 1.05–1.41; P = 0.008) as no significant association was found between HDL-C and cancer in the second half of follow-up.Conclusions: Low HDL-C is associated with cancer risk in patients with type II diabetes. However, this association may be explained by confounding and reverse causation.Impact: HDL-C is not a risk factor for cancer in type II diabetes. Cancer Epidemiol Biomarkers Prev; 22(9); 1628–33. ©2013 AACR.
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- 2023
5. Supplementary Table 1 from The Association of High-Density Lipoprotein Cholesterol with Cancer Incidence in Type II Diabetes: A Case of Reverse Causality?
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Sophia Zoungas, Mark E. Cooper, Michel Marre, Neil R. Poulter, Giuseppe Mancia, Mark Woodward, John Chalmers, Martin K.C. Ng, and Jamie Morton
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PDF file - 85K, Baseline characteristics stratified by subsequent cancer cases versus non-cases.
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- 2023
6. An Engineered Nanosugar Enables Rapid and Sustained Glucose-Responsive Insulin Delivery in Diabetic Mice
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Rong Xu, Sukhvir Kaur Bhangu, Karly C. Sourris, Domitilla Vanni, Marc-Antoine Sani, John A. Karas, Karen Alt, Be'eri Niego, Anukreity Ale, Quinn A. Besford, Brendan Dyett, Joshua Patrick, Irena Carmichael, Jonathan E. Shaw, Frank Caruso, Mark E. Cooper, Christoph E. Hagemeyer,* and Francesca Cavalieri
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Akita mice, glucose responsive insulin delivery, hepatobiliary excretion, phytoglycogen nanoparticles, super-resolution microscopy, type 1 diabetes - Abstract
Glucose-responsive insulin-delivery platforms that are sensitive to dynamic glucose concentration fluctuations and provide both rapid and prolonged insulin release have great potential to control hyperglycemia and avoid hypoglycemia diabetes. Here, biodegradable and charge-switchable phytoglycogen nanoparticles capable of glucose-stimulated insulin release are engineered. The nanoparticles are “nanosugars” bearing glucose-sensitive phenylboronic acid groups and amine moieties that allow effective complexation with insulin (≈95% loading capacity) to form nanocomplexes. A single subcutaneous injection of nanocomplexes shows a rapid and efficient response to a glucose challenge in two distinct diabetic mouse models, resulting in optimal blood glucose levels (below 200 mg dL–1) for up to 13 h. The morphology of the nanocomplexes is found to be key to controlling rapid and extended glucoseregulated insulin delivery in vivo. These studies reveal that the injected nanocomplexes enabled efficient insulin release in the mouse, with optimal bioavailability, pharmacokinetics, and safety profiles. These results highlight a promising strategy for the development of a glucose-responsive insulin delivery system based on a natural and biodegradable nanosugar.
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- 2023
7. Low- and middle-income countries demonstrate rapid growth of type 2 diabetes: an analysis based on Global Burden of Disease 1990–2019 data
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Jinli Liu, Ruhai Bai, Zhonglin Chai, Mark E. Cooper, Paul Z. Zimmet, and Lei Zhang
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Diabetes Mellitus, Type 2 ,Risk Factors ,Endocrinology, Diabetes and Metabolism ,Internal Medicine ,Humans ,Quality-Adjusted Life Years ,Global Health ,Developing Countries ,Global Burden of Disease - Abstract
Aims/hypothesis The study aims to quantify the global trend of the disease burden of type 2 diabetes caused by various risks factors by country income tiers. Methods Data on type 2 diabetes, including mortality and disability-adjusted life years (DALYs) during 1990–2019, were obtained from the Global Burden of Disease Study 2019. We analysed mortality and DALY rates and the population attributable fraction (PAF) in various risk factors of type 2 diabetes by country income tiers. Results Globally, the age-standardised death rate (ASDR) attributable to type 2 diabetes increased from 16.7 (15.7, 17.5)/100,000 person-years in 1990 to 18.5 (17.2, 19.7)/100,000 person-years in 2019. Similarly, age-standardised DALY rates increased from 628.3 (537.2, 730.9)/100,000 person-years to 801.5 (670.6, 954.4)/100,000 person-years during 1990–2019. Lower-middle-income countries reported the largest increase in the average annual growth of ASDR (1.3%) and an age-standardised DALY rate (1.6%) of type 2 diabetes. The key PAF attributing to type 2 diabetes deaths/DALYs was high BMI in countries of all income tiers. With the exception of BMI, while in low- and lower-middle-income countries, risk factors attributable to type 2 diabetes-related deaths and DALYs are mostly environment-related, the risk factors in high-income countries are mostly lifestyle-related. Conclusions/interpretation Type 2 diabetes disease burden increased globally, but low- and middle-income countries showed the highest growth rate. A high BMI level remained the key contributing factor in all income tiers, but environmental and lifestyle-related factors contributed differently across income tiers. Data availability To download the data used in these analyses, please visit the Global Health Data Exchange at http://ghdx.healthdata.org/gbd-2019. Graphical abstract
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- 2022
8. Recent advances in the pharmacotherapeutic management of diabetic kidney disease
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Tomasz J, Block, Duygu, Batu, and Mark E, Cooper
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Renin-Angiotensin System ,Pharmacology ,Dipeptidyl-Peptidase IV Inhibitors ,Diabetes Mellitus ,Humans ,Diabetic Nephropathies ,Pharmacology (medical) ,General Medicine ,Sodium-Glucose Transporter 2 Inhibitors ,Mineralocorticoid Receptor Antagonists - Abstract
Diabetic kidney disease (DKD) remains a major cause of morbidity and mortality in diabetes and is a key cause of end-stage kidney disease (ESKD) worldwide. Major clinical advances have been confirmed in large trials demonstrating renoprotection, adding to the benefits of existing intensive glucose and blood pressure control therapies. Furthermore, there are exciting new treatments predominantly at an experimental and early clinical phase which appear promising.The authors review DKD in the context of existing and emerging therapies affording cardiorenal benefits including SGLT2 inhibitors and GLP-1 receptor agonists. They explore novel therapies demonstrating potential including a newly developed mineralocorticoid receptor antagonist and endothelin receptor blockade, while evaluating the utility of DPP4 inhibitors in current clinical practice. They also consider the recent evidence of emerging therapies targeting metabolic pathways with enzyme inhibitors, anti-fibrotic agents, and agents modulating transcription factors.Significant improvements have been made in the management of DKD with SGLT2i and GLP-1 agonists providing impressive renoprotection, with novel progress in renin-angiotensin-aldosterone system (RAAS) blockade with finerenone. There is also great potential for several new experimental therapies. These advances provide us with optimism that the outlook of this devastating condition will continue to improve.
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- 2022
9. Addition of glomerular lesion severity improves the value of anemia status for the prediction of renal outcomes in Chinese patients with type 2 diabetes
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Lijun Zhao, Qianqian Han, Li Zhou, Lin Bai, Yiting Wang, Yucheng Wu, Honghong Ren, Yutong Zou, Shuangqing Li, Qiaoli Su, Huan Xu, Lin Li, Zhonglin Chai, Mark E. Cooper, Nanwei Tong, Jie Zhang, and Fang Liu
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Male ,China ,Biopsy ,Kidney Glomerulus ,Anemia ,General Medicine ,Middle Aged ,Hypoxia-Inducible Factor 1, alpha Subunit ,Critical Care and Intensive Care Medicine ,Hemoglobins ,Diabetes Mellitus, Type 2 ,Predictive Value of Tests ,Nephrology ,Disease Progression ,Humans ,Kidney Failure, Chronic ,Diabetic Nephropathies ,Female ,Longitudinal Studies ,Biomarkers ,Retrospective Studies - Abstract
We aimed to determine the utility of biopsy data and anemia for the prediction of renal outcomes in Chinese patients with type 2 diabetes. In total, 441 Chinese patients with type 2 diabetes and biopsy-confirmed diabetic nephropathy (DN) were enrolled in a retrospective study. Their renal pathology was assessed using the Renal Pathology Society system. Cox proportional hazards models were used to estimate hazard ratios (HRs) for end-stage renal disease (ESRD), and immunofluorescence staining was used to assess the expression of hypoxia-inducible factor (HIF)-α in patients' kidneys. We found that glomerular pathology classification was an independent pathological predictor of low hemoglobin concentration, according to linear and logistic regression analyses. Each 1 g/dL decrease in baseline hemoglobin concentration was associated with a 42% higher risk of an adverse renal outcome, after adjustment for clinical and pathologic covariates. In patients with severe glomerular lesions, the risk of progression to ESRD was significantly higher if mild or moderate/severe anemia was present, but in patients with mild glomerular lesions, the risk was only significantly higher in those with moderate or severe anemia than in the absence of anemia. Harrell's C Concordance was improved, but the Akaike information criterion was worsened by adding the glomerular pathology classification to the use of anemia status and clinical data. Immunofluorescence staining revealed that renal HIF-1α and HIF-2α expression was significantly higher in classes II-IV than class I. Thus, the addition of glomerular pathology classification increases the value of anemia status for the prediction of the progression to ESRD.
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- 2022
10. Prognostic value of metabolic syndrome in renal structural changes in type 2 diabetes
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Lijun Zhao, Yutong Zou, Lin Bai, Li Zhou, Honghong Ren, Yucheng Wu, Yiting Wang, Shuangqing Li, Qiaoli Su, Linqiao Tang, Yuancheng Zhao, Huan Xu, Lin Li, Zhonglin Chai, Mark E. Cooper, Nanwei Tong, Jie Zhang, and Fang Liu
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Metabolic Syndrome ,Diabetes Mellitus, Type 2 ,Nephrology ,Urology ,Disease Progression ,Humans ,Kidney Failure, Chronic ,Diabetic Nephropathies ,Kidney ,Prognosis ,Retrospective Studies - Abstract
To investigate the prognostic value of metabolic syndrome (MetS) and its relationship with renal structure changes in patients with type 2 diabetes and associated diabetic nephropathy (DN).411 Chinese patients with type 2 diabetes and biopsy-confirmed DN were enrolled in this retrospective study. MetS was defined according to the modified criteria of the 2005 International Diabetes Federation. Baseline demographics and clinical information at the time of renal biopsy were extracted from the hospital's electronic medical records system. Renal pathological findings were assessed according to Renal Pathology Society system. Univariate and multivariate logistic regression analyses were performed to define the pathological covariates associated with MetS. A competing risk model, with death as the competing risk, was used to estimate the sub-distribution hazard ratio (SHR) of MetS for end-stage kidney disease (ESKD).224 (55%) patients had MetS. Patients with MetS had poor renal function and more severe interstitial fibrosis tubular atrophy scores (IFTA) than those without MetS. Multivariate logistic regression analysis revealed that IFTA was significantly associated with MetS (odds ratio per score increase 1.45, 95% confidence interval [CI] 1.02-2.05). Of the patients with DN at risk, 40% of patients progressed to ESKD. After adjusting for renal function and pathological parameters, the presence of MetS was an independent predictor for progression to ESKD (SHR 1.93, 95% CI 1.34-2.79). The SHRs for progression to ESKD also increased as the number of MetS components increased. Additionally, adding the IFTA scores improved the prognostic power of a model that only contained MetS and clinical covariates for predicting future ESKD.MetS is an independent prognostic predictor of ESKD in patients with T2D and DN, while adding the IFTA scores increased the prognostic value of MetS for renal outcome.
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- 2022
11. Adverse renal effects of NLRP3 inflammasome inhibition by MCC950 in an interventional model of diabetic kidney disease
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Jakob A. Østergaard, Jay C. Jha, Arpeeta Sharma, Aozhi Dai, Judy S.Y. Choi, Judy B. de Haan, Mark E. Cooper, and Karin Jandeleit-Dahm
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Male ,Inflammasomes ,Mice, Knockout, ApoE ,Oxidative Stress/drug effects ,Diabetes Mellitus, Experimental ,Furans/adverse effects ,Indenes/adverse effects ,Inflammation/drug therapy ,NLR Family, Pyrin Domain-Containing 3 Protein ,Animals ,Diabetic Nephropathies ,MCC950 ,Furans ,Research Articles ,Diabetes & Metabolic Disorders ,Inflammation ,Diabetic Nephropathies/pathology ,Sulfonamides ,diabetic nephropathy ,Inflammasomes/drug effects ,Sulfonamides/adverse effects ,General Medicine ,Fibrosis ,NLRP3 inflammasome ,Oxidative Stress ,Indenes ,NLR Family, Pyrin Domain-Containing 3 Protein/drug effects - Abstract
Activation of nucleotide-binding oligomerization domain-like receptor pyrin domain containing 3 (NLRP3) inflammasome has been reported in diabetic complications including diabetic kidney disease (DKD). However, it remains unknown if NLRP3 inhibition is renoprotective in a clinically relevant interventional approach with established DKD. We therefore examined the effect of the NLRP3-specific inhibitor MCC950 in streptozotocin-induced diabetic mice to measure the impact of NLRP3 inhibition on renal inflammation and associated pathology in DKD. We identified an adverse effect of MCC950 on renal pathology in diabetic animals. Indeed, MCC950-treated diabetic animals showed increased renal inflammation and macrophage infiltration in association with enhanced oxidative stress as well as increased mesangial expansion and glomerulosclerosis when compared with vehicle-treated diabetic animals. Inhibition of the inflammasome by MCC950 in diabetic mice led to renal up-regulation of markers of inflammation (Il1β, Il18 and Mcp1), fibrosis (Col1, Col4, Fn1, α-SMA, Ctgf and Tgfβ1) and oxidative stress (Nox2, Nox4 and nitrotyrosine). In addition, enhanced glomerular accumulation of pro-inflammatory CD68 positive cells and pro-oxidant factor nitrotyrosine was identified in the MCC950-treated diabetic compared with vehicle-treated diabetic animals. Collectively, in this interventional model of established DKD, NLRP3 inhibition with MCC950 did not show renoprotective effects in diabetic mice. On the contrary, diabetic mice treated with MCC950 exhibited adverse renal effects particularly enhanced renal inflammation and injury including mesangial expansion and glomerulosclerosis.
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- 2022
12. Treatment of Type 2 Diabetes With
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Jakob A, Østergaard and Mark E, Cooper
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- 2022
13. Can we harness digital technologies and physiology to hasten genetic gain in US maize breeding?
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S. Lira, Mark E. Cooper, M. Jines, Dean Podlich, Carlos D. Messina, Tom Tang, Christine H. Diepenbrock, and Frank Technow
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Crops, Agricultural ,Digital Technology ,Breeding program ,Regular Issue Content ,Physiology ,Process (engineering) ,Genomics ,Gap analysis (conservation) ,Plant Science ,Biology ,Zea mays ,United States ,Plant Breeding ,Genetic gain ,Genetics ,Leverage (statistics) ,Identification (biology) ,Selection, Genetic ,Plant Physiological Phenomena ,Selection (genetic algorithm) - Abstract
Plant physiology can offer invaluable insights to accelerate genetic gain. However, translating physiological understanding into breeding decisions has been an ongoing and complex endeavor. Here we demonstrate an approach to leverage physiology and genomics to hasten crop improvement. A half-diallel maize (Zea mays) experiment resulting from crossing 9 elite inbreds was conducted at 17 locations in the USA corn belt and 6 locations at managed stress environments between 2017 and 2019 covering a range of water environments from 377 to 760 mm of evapotranspiration and family mean yields from 542 to 1,874 g m−2. Results from analyses of 35 families and 2,367 hybrids using crop growth models linked to whole-genome prediction (CGM–WGP) demonstrated that CGM–WGP offered a predictive accuracy advantage compared to BayesA for untested genotypes evaluated in untested environments (r = 0.43 versus r = 0.27). In contrast to WGP, CGMs can deal effectively with time-dependent interactions between a physiological process and the environment. To facilitate the selection/identification of traits for modeling yield, an algorithmic approach was introduced. The method was able to identify 4 out of 12 candidate traits known to explain yield variation in maize. The estimation of allelic and physiological values for each genotype using the CGM created in silico phenotypes (e.g. root elongation) and physiological hypotheses that could be tested within the breeding program in an iterative manner. Overall, the approach and results suggest a promising future to fully harness digital technologies, gap analysis, and physiological knowledge to hasten genetic gain by improving predictive skill and definition of breeding goals.
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- 2021
14. Association between serum uric acid and renal outcome in patients with biopsy-confirmed diabetic nephropathy
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Yutong Zou, Yuancheng Zhao, Rui Zhang, Fang Liu, Huan Xu, Jiali Wang, Honghong Ren, Yucheng Wu, Lijun Zhao, Chai Zhonglin, Lin Li, Mark E. Cooper, Yiting Wang, Chunmei Qin, Nan Wei Tong, Tingli Wang, and Junlin Zhang
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serum uric acid ,medicine.medical_specialty ,type 2 diabetes mellitus ,Endocrinology, Diabetes and Metabolism ,Disease ,urologic and male genital diseases ,Gastroenterology ,Diseases of the endocrine glands. Clinical endocrinology ,Diabetic nephropathy ,Endocrinology ,Internal medicine ,Biopsy ,Internal Medicine ,medicine ,renal outcome ,Survival analysis ,medicine.diagnostic_test ,Proportional hazards model ,business.industry ,Research ,diabetic nephropathy ,Hazard ratio ,Type 2 Diabetes Mellitus ,RC648-665 ,medicine.disease ,Quartile ,business - Abstract
Objective To investigate the relationship between serum uric acid (SUA) level and renal outcome in patients with type 2 diabetes mellitus (T2DM) and diabetic nephropathy (DN). Methods A total of 393 Chinese patients with T2DM and biopsy-proven DN and followed at least 1 year were enrolled in this study. Patients were stratified by the quartiles of baseline level of SUA: Q1 group: 286.02 ± 46.66 μmol/L (n = 98); Q2 group: 358.23 ± 14.03 μmol/L (n = 99); Q3 group: 405.50 ± 14.59 μmol/L (n = 98) and Q4 group: 499.14 ± 56.97μmol/L (n = 98). Renal outcome was defined by progression to end-stage renal disease (ESRD). Kaplan–Meier survival analysis and Cox proportional hazards model were used to analyze the association between SUA quartiles and the renal outcomes. Results During the median 3-year follow-up period, there were 173 ESRD outcome events (44.02%). No significant difference between SUA level and the risk of progression of DN (P = 0.747) was shown in the Kaplan–Meier survival analysis. In multivariable-adjusted model, hazard ratios for developing ESRD were 1.364 (0.621–2.992; P = 0.439), 1.518 (0.768–3.002; P = 0.230) and 1.411 (0.706–2.821; P = 0.330) for the Q2, Q3 and Q4, respectively, in comparison with the Q1 (P = 0.652). Conclusions No significant association between SUA level and renal outcome of ESRD in Chinese patients with T2DM and DN was found in our study. Besides, the role of uric acid-lowering therapy in delaying DN progression and improving ESRD outcome had not yet been proven. Further study was needed to clarify the renal benefit of the uric acid-lowering therapy in the treatment of DN.
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- 2021
15. Diabetic kidney disease, a potentially serious issue resulting from collision of the coronavirus disease 2019 and diabetes global pandemics
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Zhonglin Chai, Paul Z. Zimmet, and Mark E. Cooper
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- 2021
16. Advances in clinical research in chronic kidney disease
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Zhonglin Chai, Mark E. Cooper, Fang Liu, and Yutong Zou
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medicine.medical_specialty ,Editorial ,Clinical research ,business.industry ,Internal medicine ,Internal Medicine ,medicine ,medicine.disease ,business ,Kidney disease - Published
- 2021
17. Predicting phenotypes from genetic, environment, management, and historical data using CNNs
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Patrick O’Briant, Emre Cimen, Timothy Reeves, Jacob D. Washburn, Graeme Hammer, Greg McLean, Edward S. Buckler, Guillaume P. Ramstein, and Mark E. Cooper
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Feature engineering ,Gene by environment ,Computer science ,business.industry ,Yield (finance) ,General Medicine ,Standard methods ,Biology ,Perceptron ,Machine learning ,computer.software_genre ,Convolutional neural network ,Prediction methods ,Genetics ,Deep neural networks ,Survey data collection ,Saliency map ,Artificial intelligence ,business ,Agronomy and Crop Science ,computer ,Biotechnology ,Slightly worse - Abstract
Key Message: Convolutional Neural Networks (CNNs) can perform similarly or better than standard genomic prediction methods when sufficient genetic, environmental, and management data are provided. Abstract: Predicting phenotypes from genetic (G), environmental (E), and management (M) conditions is a long-standing challenge with implications to agriculture, medicine, and conservation. Most methods reduce the factors in a dataset (feature engineering) in a subjective and potentially oversimplified manner. Deep neural networks such as Multilayer Perceptrons (MPL) and Convolutional Neural Networks (CNN) can overcome this by allowing the data itself to determine which factors are most important. CNN models were developed for predicting agronomic yield from a combination of replicated trials and historical yield survey data. The results were more accurate than standard methods when tested on held-out G, E, and M data (r = 0.50 vs. r = 0.43), and performed slightly worse than standard methods when only G was held out (r = 0.74 vs. r = 0.80). Pre-training on historical data increased accuracy compared to trial data alone. Saliency map analysis indicated the CNN has “learned” to prioritize many factors of known agricultural importance.
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- 2021
18. Pro-resolving lipid mediators: regulators of inflammation, metabolism and kidney function
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Eoin P. Brennan, Phillip Kantharidis, Mark E. Cooper, and Catherine Godson
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Inflammation ,Review Article ,Kidney ,End stage renal disease ,Impaired glucose tolerance ,End-stage renal disease ,Insulin resistance ,Diabetes mellitus ,Diabetes Mellitus ,medicine ,Humans ,Diabetic Nephropathies ,Obesity ,Renal Insufficiency, Chronic ,Molecular medicine ,business.industry ,Diabetes ,Chronic inflammation ,Lipid signaling ,Lipid Metabolism ,medicine.disease ,Lipids ,Metabolic syndrome ,Nephrology ,Immunology ,Inflammation Mediators ,medicine.symptom ,business ,Diabetic Angiopathies ,Kidney disease - Abstract
Obesity, diabetes mellitus, hypertension and cardiovascular disease are risk factors for chronic kidney disease (CKD) and kidney failure. Chronic, low-grade inflammation is recognized as a major pathogenic mechanism that underlies the association between CKD and obesity, impaired glucose tolerance, insulin resistance and diabetes, through interaction between resident and/or circulating immune cells with parenchymal cells. Thus, considerable interest exists in approaches that target inflammation as a strategy to manage CKD. The initial phase of the inflammatory response to injury or metabolic dysfunction reflects the release of pro-inflammatory mediators including peptides, lipids and cytokines, and the recruitment of leukocytes. In self-limiting inflammation, the evolving inflammatory response is coupled to distinct processes that promote the resolution of inflammation and restore homeostasis. The discovery of endogenously generated lipid mediators — specialized pro-resolving lipid mediators and branched fatty acid esters of hydroxy fatty acids — which promote the resolution of inflammation and attenuate the microvascular and macrovascular complications of obesity and diabetes mellitus highlights novel opportunities for potential therapeutic intervention through the targeting of pro-resolution, rather than anti-inflammatory pathways., Inflammation is a known driver of diabetes and obesity-associated kidney disease. This Review describes the role of endogenous lipid mediators — specialized pro-resolving lipid mediators and branched fatty acid esters of hydroxy fatty acids — in the resolution of inflammation and explores how insights into their function could identify new targets for therapeutic intervention., Key points The role of inflammation in the pathogenesis of diabetes and obesity-associated kidney disease is increasingly appreciated; cytokines and pro-inflammatory lipids have important roles as drivers of inflammation and in the pathogenesis of impaired glucose tolerance, insulin resistance and diabetes. The initiation and resolution of inflammation occurs via a coordinated host response, involving pro-inflammatory and anti-inflammatory or pro-resolving mediators, which are produced at the site of organ injury in a temporally controlled manner. The discovery of endogenously generated lipid mediators that promote the resolution of inflammation and attenuate microvascular and macrovascular complications of diabetes and obesity highlights potential opportunities for therapeutic intervention. ‘Resolution pharmacology’ is a novel therapeutic paradigm that seeks to make targeted use of endogenous pro-resolving mediators to treat chronic inflammation, such as occurs in diabetic kidney disease.
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- 2021
19. Antimicrobial screening of a historical collection of over 140 000 small molecules
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Mark E. Cooper, Mikhail M. Raihstat, Johannes Zuegg, Roman V. Semenov, Leonid D. Konyushkin, Karl A. Hansford, Alysha G. Elliott, Victor V. Semenov, and Mark A. T. Blaskovich
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chemistry.chemical_compound ,Chemical compound ,Chemistry ,General Chemistry ,Antimicrobial screening ,Antimicrobial ,Combinatorial chemistry ,Small molecule ,Volume concentration ,Antimicrobial drug - Abstract
Most of the chemical compound collection (currently about 200 000), assembled at the N. D. Zelinsky Institute of Organic Chemistry over the past 30 years, has been screened for antimicrobial activity against five ESKAPE pathogens and two fungi at the University of Queensland on a charitable basis. A total of 2517 active molecules (MIC ≤ 32 μg ml–1) were found, of which about 10% are active at very low concentrations (MIC ≤ 1 μg ml–1). Structures of 142 012 compounds and experimental data on their antimicrobial activity are publicly available through the demo version of the CheD software and the public database of the Community for Open Antimicrobial Drug Discovery.
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- 2021
20. Asymmetric Synthesis and Biological Screening of Quinoxaline-Containing Synthetic Lipoxin A4 Mimetics (QNX-sLXms)
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Catherine Tighe, Monica de Gaetano, Andrea Zanetti, Catherine Godson, Jianmin Chen, Patrick J. Guiry, Mark E. Cooper, Xavier Leroy, Kevin Gahan, Eoin P. Brennan, Derek W. Gilroy, Antonino Cacace, Mauro Perretti, Mariam Marai, Justine Newson, Andrew Gaffney, and Phillip Kantharidis
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Lipopolysaccharides ,Lipopolysaccharide ,Cell Survival ,Drug Evaluation, Preclinical ,Context (language use) ,Inflammation ,Pharmacology ,01 natural sciences ,Article ,Monocytes ,Formyl peptide receptor 2 ,Mice ,Structure-Activity Relationship ,03 medical and health sciences ,chemistry.chemical_compound ,In vivo ,Quinoxalines ,Drug Discovery ,medicine ,Animals ,Humans ,Receptors, Lipoxin ,Receptor ,Cells, Cultured ,030304 developmental biology ,0303 health sciences ,Lipoxin ,Dose-Response Relationship, Drug ,Molecular Structure ,Tumor Necrosis Factor-alpha ,Anti-Inflammatory Agents, Non-Steroidal ,NF-kappa B ,Receptors, Formyl Peptide ,In vitro ,0104 chemical sciences ,3. Good health ,010404 medicinal & biomolecular chemistry ,chemistry ,Molecular Medicine ,medicine.symptom - Abstract
Failure to resolve inflammation underlies many prevalent pathologies. Recent insights have identified lipid mediators, typified by lipoxins (LXs), as drivers of inflammation resolution, suggesting potential therapeutic benefit. We report the asymmetric preparation of novel quinoxaline-containing synthetic-LXA4-mimetics (QNX-sLXms). Eight novel compounds were screened for their impact on inflammatory responses. Structure–activity relationship (SAR) studies showed that (R)-6 (also referred to as AT-02-CT) was the most efficacious and potent anti-inflammatory compound of those tested. (R)-6 significantly attenuated lipopolysaccharide (LPS)- and tumor-necrosis-factor-α (TNF-α)-induced NF-κB activity in monocytes and vascular smooth muscle cells. The molecular target of (R)-6 was investigated. (R)-6 activated the endogenous LX receptor formyl peptide receptor 2 (ALX/FPR2). The anti-inflammatory properties of (R)-6 were further investigated in vivo in murine models of acute inflammation. Consistent with in vitro observations, (R)-6 attenuated inflammatory responses. These results support the therapeutic potential of the lead QNX-sLXm (R)-6 in the context of novel inflammatory regulators.
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- 2021
21. Pharmacological Inhibition of the Nod-Like Receptor Family Pyrin Domain Containing 3 Inflammasome with MCC950
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Reena Halai, Sarah E. Corcoran, and Mark E. Cooper
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Pharmacology ,Clinical Trials as Topic ,Sulfonamides ,Anakinra ,integumentary system ,Inflammasomes ,business.industry ,Pyroptosis ,NOD-like receptor ,NLR Proteins ,Pyrin Domain ,Inflammasome ,Disease ,Bioinformatics ,Pyrin domain ,Proinflammatory cytokine ,Canakinumab ,Indenes ,NLR Family, Pyrin Domain-Containing 3 Protein ,Humans ,Molecular Medicine ,Medicine ,Furans ,business ,medicine.drug - Abstract
Activation of the Nod-like receptor family pyrin domain containing 3 (NLRP3) inflammasome drives release of the proinflammatory cytokines interleukin (IL)-1β and IL-18 and induces pyroptosis (lytic cell death). These events drive chronic inflammation, and as such, NLRP3 has been implicated in a large number of human diseases. These range from autoimmune conditions, the simplest of which is NLRP3 gain-of-function mutations leading to an orphan disease, cryopyrin-associated period syndrome, to large disease burden indications, such as atherosclerosis, heart failure, stroke, neurodegeneration, asthma, ulcerative colitis, and arthritis. The potential clinical utility of NLRP3 inhibitors is substantiated by an expanding list of indications in which NLRP3 activation has been shown to play a detrimental role. Studies of pharmacological inhibition of NLRP3 in nonclinical models of disease using MCC950 in combination with human genetics, epigenetics, and analyses of the efficacy of biologic inhibitors of IL-1β, such as anakinra and canakinumab, can help to prioritize clinical trials of NLRP3-directed therapeutics. Although MCC950 shows excellent (nanomolar) potency and high target selectivity, its pharmacokinetic and toxicokinetic properties limited its therapeutic development in the clinic. Several improved, next-generation inhibitors are now in clinical trials. Hence the body of research in a plethora of conditions reviewed herein may inform analysis of the potential translational value of NLRP3 inhibition in diseases with significant unmet medical need. SIGNIFICANCE STATEMENT: The nod-like receptor family pyrin domain containing 3 (NLRP3) inflammasome is one of the most widely studied and best validated biological targets in innate immunity. Activation of NLRP3 can be inhibited with MCC950, resulting in efficacy in more than 100 nonclinical models of inflammatory diseases. As several next-generation NLRP3 inhibitors are entering proof-of-concept clinical trials in 2020, a review of the pharmacology of MCC950 is timely and significant.
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- 2021
22. Addressing Research Bottlenecks to Crop Productivity
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Viktor Korzun, M. John Foulkes, Gustavo A. Slafer, Ian C. Dodd, Nicolas L. Taylor, Barry J. Pogson, Mark E. Cooper, Carlos D. Messina, Bingru Huang, Graeme Hammer, Peter E. Wittich, Owen K. Atkin, Susan R. McCouch, Matthew P. Reynolds, Ian R. Henderson, Malcolm J. Bennett, and Claus Frohberg
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Crops, Agricultural ,0106 biological sciences ,0301 basic medicine ,Research areas ,Genomics ,Plant Science ,Biology ,01 natural sciences ,Crop productivity ,03 medical and health sciences ,Phenomics ,Productivity ,business.industry ,fungi ,Environmental resource management ,Public-private-partnership ,food and beverages ,Crop growth model ,Investment (macroeconomics) ,Hormones ,Recombination ,Crop Production ,Plant Breeding ,Public–private partnership ,Phenotype ,030104 developmental biology ,Genetic gain ,sink [Source] ,business ,010606 plant biology & botany - Abstract
Special Issue: Feeding the World: The Future of Plant Breeding Asymmetry of investment in crop research leads to knowledge gaps and lostopportunities to accelerate genetic gain through identifying new sources andcombinations of traits and alleles. On the basis of consultation with scientistsfrom most major seed companies, we identified several research areas withthree common features: (i) relatively underrepresented in the literature; (ii) highprobability of boosting productivity in a wide range of crops and environments;and (iii) could be researched in‘precompetitive’space, leveraging previousknowledge, and thereby improving models that guide crop breeding and man-agement decisions. Areas identified included research into hormones, recombi-nation, respiration, roots, and source–sink, which, along with new opportunitiesin phenomics, genomics, and bioinformatics, make it more feasible to explorecrop genetic resources and improve breeding strategies. The authors acknowledge the following scientists for helping to achieve a consensus on research bottlenecks with significant implications for crop improvement: Yann Manes (Syngenta), Jeremy Derory (Limagrain), Bruno Marty (BASF), and Hans Braun (recent director of the Global Wheat Program, CIMMYT). We acknowledge Renee Lafitte (Bill and Melinda Gates Foundation) for helpful feedback on the manuscript and Fatima Escalante for valuable assistance in coordinating edits to the manuscript and its formatting. M.R. acknowledges the International Wheat Yield Partnership (https://iwyp.org/) for establishing a precedent of integrating different research strands in wheat for targeted prebreeding and the Foundation for Food and Agricultural Research (https://foundationfar.org/) for supporting a translational research and prebreeding pipeline at CIMMYT to identify and stack climate resilience traits in wheat.
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- 2021
23. Key profibrotic and pro-inflammatory pathways in the pathogenesis of diabetic kidney disease
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Tieqiao Wu, Kexin Shi, Yuxin Yang, Mark E. Cooper, Devang M. Patel, and Zhonglin Chai
- Subjects
Pathogenesis ,Diabetic kidney ,business.industry ,Immunology ,Medicine ,Inflammatory pathways ,Disease ,business - Abstract
Diabetes is a noncommunicable disease and arguably represents the greatest pandemic in human history. Diabetic kidney disease (DKD) is seen in both type 1 and type 2 diabetes and can be detected in up to 30–50% of diabetic subjects. DKD is a progressive chronic kidney disease (CKD) and is a leading cause of mortality and morbidity in patients with diabetes. Renal fibrosis and inflammation are the major pathological features of DKD. There are a large number of independent and overlapping profibrotic and pro-inflammatory pathways involved in the pathogenesis and progression of DKD. Among these pathways, the transforming growth factor-β (TGF-β) pathway plays a key pathological role by promoting fibrosis. Sirtuin-1 (SIRT1) is a protein deacetylase that has been shown to be renoprotective with an anti-inflammatory effect. It is postulated that a reduction in renal SIRT1 levels could play a key role in the pathogenesis of DKD and that restoration of SIRT1 will attenuate DKD. Cell division autoantigen 1 (CDA1) synergistically enhances the profibrotic effect of TGF-β in DKD by regulating the expression of the TGF-β type I receptor (TβRI). CDA1 has also been found to be an inhibitor of SIRT1 in the DNA damage response. Indeed, targeting CDA1 in experimental DKD not only attenuates diabetes-associated renal fibrosis but also attenuates the expression of key pro-inflammatory genes such as tumor necrosis factor-α (TNF-α) and Monocyte Che moattractant Protein-1 (MCP-1). In conclusion, there is a large body of experimental data to support the view that targeting CDA1 is a superior approach to directly targeting TGF-β in DKD since it is not only safe but also efficacious in retarding both fibrosis and inflammation.
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- 2021
24. 437-P: NOX5 in Human Peripheral Blood Mononuclear Cells Is a Potential Biomarker for Unstable Diabetic Vascular Disease
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TOMASZ J. BLOCK, KARLY SOURRIS, WAHEED KHAN, PHILLIP KANTHARIDIS, JAY C. JHA, MARK E. COOPER, JAMES SHAW, and KARIN JANDELEIT-DAHM
- Subjects
Endocrinology, Diabetes and Metabolism ,Internal Medicine - Abstract
Background: Human NADPH oxidase 5 (NOX5) is expressed and functionally active in peripheral blood mononuclear cells (PBMCs) . In those with diabetes, there is increased NOX5 expression in atherosclerotic plaques with associated coronary artery disease (CAD) and within the glomeruli in kidney biopsies. We hypothesise that NOX5 expression in circulating PBMCs is increased in patients with diabetes, particularly in those with comorbid unstable CAD and chronic kidney disease (CKD) . Methods: 55 males aged 33-83 years underwent elective or emergency coronary angiography/angioplasty at the Alfred Hospital Catheter Laboratory. PBMCs from whole blood were processed for flow-cytometry to measure NOX5 protein. In parallel, NOX5 expression was measured in PBMCs by qPCR. In vitro, human macrophages (THP-1) were incubated in normal (5 mM) and high glucose (25 mM) . NOX5 expression and inflammatory markers were measured by qPCR. Results: NOX5 protein expression in PBMCs was primarily driven by expression in monocytes (CD 45+/CD14+ cells) and was increased in diabetic and non-diabetic patients with CKD (28.7±4.2 vs. 17.3±1.7 AU; p=0.0038) and in diabetic patients with CKD versus without CKD (27.5±4.1 vs. 14.6±2.3 AU; p=0.012) . CAD with acute presentation was associated with increased NOX5 expression versus elective presentation (25.9±2.9 vs. 16.8±1.9 AU; p=0.0085) , particularly in diabetic patients presenting acutely versus electively (29.1±4.2 vs. 13.9±2.4 AU; p=0.0025) . A 4-fold upregulation of NOX5 gene was observed in patients with CKD versus without CKD irrespective of diabetes or CAD (p=0.018) . In vitro, there was a 2-fold increase in NOX5, TNF-α and IL-6 expression in THP-1 cells exposed to high glucose. Conclusion: CKD and unstable CAD appear to be key factors for increased NOX5 expression in circulating PBMCs. Measurement of NOX5 in PBMCs may serve as a valuable prognostic biomarker and attractive therapeutic target in patients with clustering diabetic complications. Disclosure T.J.Block: None. K.Sourris: None. W.Khan: None. P.Kantharidis: None. J.C.Jha: None. M.E.Cooper: Advisory Panel; Bayer AG, Merck Sharp & Dohme Corp., Consultant; Boehringer Ingelheim International GmbH, Research Support; Novo Nordisk, Speaker's Bureau; AstraZeneca, Servier Laboratories. J.Shaw: None. K.Jandeleit-dahm: None.
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- 2022
25. Urinary complement proteins and risk of end-stage renal disease: quantitative urinary proteomics in patients with type 2 diabetes and biopsy-proven diabetic nephropathy
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L Bai, Y Zhang, L Zhao, N Tong, S Wang, H Ren, L Tang, Q Su, Y Zhong, Y Zou, J Zhang, H Yang, Y Wang, S Li, Mark E. Cooper, F Liu, H Xu, L Li, S Zheng, and Z Chai
- Subjects
Male ,Proteomics ,medicine.medical_specialty ,Biopsy ,Endocrinology, Diabetes and Metabolism ,Urinary system ,Complement ,030232 urology & nephrology ,Renal function ,030209 endocrinology & metabolism ,Diabetic nephropathy ,CD59 ,Kidney ,Kidney Function Tests ,Gastroenterology ,End stage renal disease ,End-stage renal disease ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Urinary proteomics ,Internal medicine ,Drug Discovery ,medicine ,Humans ,Diabetic Nephropathies ,Correlation of Data ,Proportional Hazards Models ,Proteinuria ,business.industry ,Complement System Proteins ,Middle Aged ,Prognosis ,medicine.disease ,Complement system ,Diabetes Mellitus, Type 2 ,Factor H ,Disease Progression ,Kidney Failure, Chronic ,Original Article ,Female ,medicine.symptom ,business ,Signal Transduction - Abstract
Purpose To investigate the association between urinary complement proteins and renal outcome in biopsy-proven diabetic nephropathy (DN). Methods Untargeted proteomic and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional analyses and targeted proteomic analysis using parallel reaction-monitoring (PRM)-mass spectrometry was performed to determine the abundance of urinary complement proteins in healthy controls, type 2 diabetes mellitus (T2DM) patients, and patients with T2DM and biopsy-proven DN. The abundance of each urinary complement protein was individually included in Cox proportional hazards models for predicting progression to end-stage renal disease (ESRD). Results Untargeted proteomic and functional analysis using the KEGG showed that differentially expressed urinary proteins were primarily associated with the complement and coagulation cascades. Subsequent urinary complement proteins quantification using PRM showed that urinary abundances of C3, C9, and complement factor H (CFAH) correlated negatively with annual estimated glomerular filtration rate (eGFR) decline, while urinary abundances of C5, decay-accelerating factor (DAF), and CD59 correlated positively with annual rate of eGFR decline. Furthermore, higher urinary abundance of CFAH and lower urinary abundance of DAF were independently associated with greater risk of progression to ESRD. Urinary abundance of CFAH and DAF had a larger area under the curve (AUC) than that of eGFR, proteinuria, or any pathological parameter. Moreover, the model that included CFAH or DAF had a larger AUC than that with only clinical or pathological parameters. Conclusion Urinary abundance of complement proteins was significantly associated with ESRD in patients with T2DM and biopsy-proven DN, indicating that therapeutically targeting the complement pathway may alleviate progression of DN.
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- 2021
26. Reproductive resilience but not root architecture underpins yield improvement under drought in maize
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Geoff Graham, Randy Clark, Carlos D. Messina, Daniel McDonald, Tom Tang, Mark E. Cooper, Carla Gho, Andrea Salinas, Graeme Hammer, Hanna Poffenbarger, and Yinan Fang
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0106 biological sciences ,0301 basic medicine ,genetic gain ,Irrigation ,Physiology ,Drought tolerance ,root systems architecture ,Plant Science ,Root system ,Biology ,eXtra Botany ,maize ,water use ,Zea mays ,01 natural sciences ,Soil ,03 medical and health sciences ,Nutrient ,Hybrid ,AcademicSubjects/SCI01210 ,reproductive resilience ,Water ,Agriculture ,Ideotype ,Droughts ,Plant Breeding ,030104 developmental biology ,Agronomy ,Genetic gain ,Water use ,Research Paper ,010606 plant biology & botany - Abstract
Because plants capture water and nutrients through roots, it was proposed that changes in root systems architecture (RSA) might underpin the 3-fold increase in maize (Zea mays L.) grain yield over the last century. Here we show that both RSA and yield have changed with decades of maize breeding, but not the crop water uptake. Results from X-ray phenotyping in controlled environments showed that single cross (SX) hybrids have smaller root systems than double cross (DX) hybrids for root diameters between 2465 µm and 181µm (P, Emerging opportunity to continue long-term genetic gain in maize yield in the US corn belt by improving the balance between canopy, root, and reproductive growth and development.
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- 2021
27. The Impact of Frailty on the Effectiveness and Safety of Intensive Glucose Control and Blood Pressure–Lowering Therapy for People With Type 2 Diabetes: Results From the ADVANCE Trial
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Mark Woodward, Michel Marre, Sophia Zoungas, Clara K Chow, Richard I. Lindley, Pavel Hamet, Stephen Harrap, Bryan Williams, Tu Ngoc Nguyen, Mark E. Cooper, Stephen MacMahon, Giuseppe Mancia, John Chalmers, Anthony Rogers, Simon Heller, Neil R Poulter, and Katie Harris
- Subjects
Blood Glucose ,Male ,Research design ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Population ,Blood Pressure ,Type 2 diabetes ,Risk Factors ,Internal medicine ,Diabetes mellitus ,Internal Medicine ,medicine ,Humans ,education ,Aged ,Retrospective Studies ,Advanced and Specialized Nursing ,education.field_of_study ,Emerging Therapies: Drugs and Regimens ,Frailty ,business.industry ,Hazard ratio ,medicine.disease ,Discontinuation ,Blood pressure ,Clinical research ,Diabetes Mellitus, Type 2 ,Female ,business - Abstract
OBJECTIVE To develop a frailty index (FI) and explore the relationship of frailty to subsequent adverse outcomes on the effectiveness and safety of more intensive control of both blood glucose and blood pressure (BP), among participants with type 2 diabetes in the Action in Diabetes and Vascular Disease: Preterax and Diamicron Modified Release Controlled Evaluation (ADVANCE) trial. RESEARCH DESIGN AND METHODS Cox proportional hazard models were used to estimate the effectiveness and safety of intensive glucose control and BP intervention according to frailty (defined as FI >0.21) status. The primary outcomes were macro- and microvascular events. The secondary outcomes were all-cause mortality, cardiovascular mortality, severe hypoglycemia, and discontinuation of BP treatment due to hypotension/dizziness. RESULTS There were 11,140 participants (mean age, 65.8 years; 42.5% women, 25.7% frail). Frailty was an independent predictor of all primary outcomes and secondary outcomes. The effect of intensive glucose treatment on primary outcomes showed some evidence of attenuation in the frail: hazard ratios for combined major macro- and microvascular events 1.03 (95% CI 0.90–1.19) in the frail versus 0.84 (95% CI 0.74–0.94) in the nonfrail (P = 0.02). A similar trend was observed with BP intervention. Severe hypoglycemia rates (per 1,000 person-years) were higher in the frail: 8.39 (6.15–10.63) vs. 4.80 (3.84–5.76) in nonfrail (P < 0.001). There was no significant difference in discontinuation of BP treatment between frailty groups. CONCLUSIONS It was possible to retrospectively estimate frailty in a trial population, and this FI identified those at higher risk of poor outcomes. Participants with frailty had some attenuation of benefit from intensive glucose-lowering and BP-lowering treatments.
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- 2021
28. Synergy of the Polymyxin-Chloramphenicol Combination against New Delhi Metallo-β-Lactamase-Producing Klebsiella pneumoniae Is Predominately Driven by Chloramphenicol
- Author
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Yan Zhu, Nusaibah Abdul Rahim, Matthew D. Johnson, Hanna E. Sidjabat, David L. Paterson, John D. Boyce, Phillip J. Bergen, Roger L. Nation, Mark E. Cooper, Mark S. Butler, Jing Fu, Darren J. Creek, Soon-Ee Cheah, Heidi H. Yu, Jian Li, and Tony Velkov
- Subjects
0301 basic medicine ,biology ,medicine.drug_class ,Klebsiella pneumoniae ,Chloramphenicol ,Polymyxin ,030106 microbiology ,Antibiotics ,Drug resistance ,biology.organism_classification ,Microbiology ,03 medical and health sciences ,030104 developmental biology ,Infectious Diseases ,Antimicrobial chemotherapy ,medicine ,Rifampicin ,Polymyxin B ,medicine.drug - Abstract
Carbapenem-resistant Klebsiella pneumoniae has been classified as an Urgent Threat by the Centers for Disease Control and Prevention (CDC). The combination of two "old" antibiotics, polymyxin and chloramphenicol, displays synergistic killing against New Delhi metallo-β-lactamase (NDM)-producing K. pneumoniae. However, the mechanism(s) underpinning their synergistic killing are not well studied. We employed an in vitro pharmacokinetic/pharmacodynamic model to mimic the pharmacokinetics of the antibiotics in patients and examined bacterial killing against NDM-producing K. pneumoniae using a metabolomic approach. Metabolomic analysis was integrated with an isolate-specific genome-scale metabolic network (GSMN). Our results show that metabolic responses to polymyxin B and/or chloramphenicol against NDM-producing K. pneumoniae involved the inhibition of cell envelope biogenesis, metabolism of arginine and nucleotides, glycolysis, and pentose phosphate pathways. Our metabolomic and GSMN modeling results highlight the novel mechanisms of a synergistic antibiotic combination at the network level and may have a significant potential in developing precision antimicrobial chemotherapy in patients.
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- 2021
29. Early-onset of type 2 diabetes mellitus is a risk factor for diabetic nephropathy progression: a biopsy-based study
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Lijun Zhao, Nanwei Tong, Jiali Wang, Junlin Zhang, Yutong Zou, Fang Liu, Yiting Wang, Honghong Ren, Tingli Wang, Huan Xu, Zhonglin Chai, Yuancheng Zhao, Rui Zhang, Lin Li, Chunmei Qin, Mark E. Cooper, and Yucheng Wu
- Subjects
Adult ,Male ,Aging ,medicine.medical_specialty ,endocrine system diseases ,Biopsy ,T2DM ,Renal function ,Diabetic nephropathy ,Risk Factors ,Internal medicine ,Diabetes mellitus ,medicine ,Humans ,Diabetic Nephropathies ,Age of Onset ,Risk factor ,Proteinuria ,business.industry ,diabetic nephropathy ,nutritional and metabolic diseases ,Type 2 Diabetes Mellitus ,Cell Biology ,Middle Aged ,medicine.disease ,Middle age ,Diabetes Mellitus, Type 2 ,Cohort ,Disease Progression ,Female ,early-onset ,medicine.symptom ,business ,Research Paper - Abstract
Several studies show that patients with early-onset diabetes have higher risk of diabetic complications than those diagnosed in middle age. However, whether early-onset of type 2 diabetes mellitus (T2DM) is a risk factor for diabetic nephropathy (DN) progression remains unclear, especially a lack of data in biopsy-confirmed cohort. In This study, we enrolled 257 patients with T2DM and biopsy-confirmed DN to investigate the role of early-onset T2DM in DN progression. Participants were divided into two groups according to the age of T2DM diagnosis: early-onset group (less than 40 years) and later-onset group (40 years or older). We found that patients with early-onset T2DM had higher glomerular grades and arteriolar hyalinosis scores than those in later-onset group. After adjusted for confounding factors, early-onset of T2DM remained an independent predictor of end-stage renal disease (ESRD) for patients with DN. In conclusion, although with the comparable renal function and proteinuria, patients with early-onset T2DM and DN had worse renal pathological changes than those with later-onset. Early-onset of T2DM might be an important predictor of ESRD for patients with DN, which called more attention to early supervision and prevention for patients with early-onset T2DM and DN.
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- 2021
30. Apoptotic Ablation of Platelets Reduces Atherosclerosis in Mice With Diabetes
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Man K.S. Lee, Emma C. Josefsson, Elizabeth Morriss, Nordin M J Hanssen, Michelle C Flynn, Camilla Bertuzzo-Veiga, Dragana Dragoljevic, Olivia D. Cooney, Andrew J. Murphy, Fatima Baig, Gopalkrishna Sreejit, Benjamin T. Kile, Annas Al-Sharea, Michael J Kraakman, Prabhakara R Nagareddy, Mark E. Cooper, Interne Geneeskunde, RS: Carim - V01 Vascular complications of diabetes and metabolic syndrome, MUMC+: MA Med Staf Artsass Cardiologie (9), Vascular Medicine, AGEM - Amsterdam Gastroenterology Endocrinology Metabolism, ACS - Diabetes & metabolism, and ACS - Atherosclerosis & ischemic syndromes
- Subjects
Male ,0301 basic medicine ,Pathology ,medicine.medical_treatment ,Apoptosis ,030204 cardiovascular system & hematology ,Piperazines ,DISEASE ,GLUCOSE ,Nitrophenols ,0302 clinical medicine ,Risk Factors ,cardiovascular disease ,Leukocytes ,MONOCYTE ,HETEROGENEITY ,Platelet ,Mice, Knockout ,Sulfonamides ,DUAL ANTIPLATELET THERAPY ,Ablation ,Haematopoiesis ,medicine.anatomical_structure ,Female ,Myelopoiesis ,Cardiology and Cardiovascular Medicine ,leukocyte ,Blood Platelets ,medicine.medical_specialty ,bone marrow ,mice ,RETICULATED PLATELETS ,HEMATOPOIESIS ,Article ,Diabetes Mellitus, Experimental ,03 medical and health sciences ,Diabetes mellitus ,medicine ,Animals ,Humans ,ACCUMULATION ,Platelet Count ,business.industry ,Monocyte ,Biphenyl Compounds ,MYELOPOIESIS ,medicine.disease ,Mice, Inbred C57BL ,030104 developmental biology ,Receptors, LDL ,VOLUME ,Bone marrow ,atherosclerosis ,business ,Diabetic Angiopathies - Abstract
Objective: People with diabetes are at a significantly higher risk of cardiovascular disease, in part, due to accelerated atherosclerosis. Diabetic subjects have increased number of platelets that are activated, more reactive, and respond suboptimally to antiplatelet therapies. We hypothesized that reducing platelet numbers by inducing their premature apoptotic death would decrease atherosclerosis. Approach and Results: This was achieved by targeting the antiapoptotic protein Bcl-x L (B-cell lymphoma-extra large; which is essential for platelet viability) via distinct genetic and pharmacological approaches. In the former, we transplanted bone marrow from mice carrying the Tyr15 to Cys loss of function allele of Bcl-x (known as Bcl-x Plt20 ) or wild-type littermate controls into atherosclerotic-prone Ldlr +/− mice made diabetic with streptozotocin and fed a Western diet. Reduced Bcl-x L function in hematopoietic cells significantly decreased platelet numbers, exclusive of other hematologic changes. This led to a significant reduction in atherosclerotic lesion formation in Bcl-x Plt20 bone marrow transplanted Ldlr +/− mice. To assess the potential therapeutic relevance of reducing platelets in atherosclerosis, we next targeted Bcl-x L with a pharmacological strategy. This was achieved by low-dose administration of the BH3 (B-cell lymphoma-2 homology domain 3) mimetic, ABT-737 triweekly, in diabetic Apoe −/− mice for the final 6 weeks of a 12-week study. ABT-737 normalized platelet numbers along with platelet and leukocyte activation to that of nondiabetic controls, significantly reducing atherosclerosis while promoting a more stable plaque phenotype. Conclusions: These studies suggest that selectively reducing circulating platelets, by targeting Bcl-x L to promote platelet apoptosis, can reduce atherosclerosis and lower cardiovascular disease risk in diabetes. Graphic Abstract: A graphic abstract is available for this article.
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- 2021
31. The comparative effects of intensive glucose lowering in diabetes patients aged below or above 65 years: Results from the <scp>ADVANCE</scp> trial
- Author
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Neil R Poulter, Giuseppe Mancia, Michel Marre, Stephen Harrap, Mark E. Cooper, John Chalmers, Pavel Hamet, Toshiaki Ohkuma, and Mark Woodward
- Subjects
Adult ,Blood Glucose ,Male ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,030209 endocrinology & metabolism ,Type 2 diabetes ,030204 cardiovascular system & hematology ,Hypoglycemia ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Internal medicine ,Diabetes mellitus ,Internal Medicine ,medicine ,Humans ,Hypoglycemic Agents ,Aged ,Macrovascular disease ,Aged, 80 and over ,Glycated Hemoglobin ,Proportional hazards model ,business.industry ,Hazard ratio ,Middle Aged ,medicine.disease ,Confidence interval ,Glucose ,Clinical research ,Diabetes Mellitus, Type 2 ,Female ,business - Abstract
AIMS: For relatively old patients with diabetes, current guidelines recommend adjustment of glycaemic goals based on patients' cognitive function, or coexisting chronic illnesses. However, the evidence which supports the efficacy and safety of intensive glucose lowering in older patients with diabetes is scarce. The objective of the present study was to compare the efficacy and safety of intensive glucose lowering in patients with type 2 diabetes stratified by age (
- Published
- 2021
32. Strategies and considerations for implementing genomic selection to improve traits with additive and non-additive genetic architectures in sugarcane breeding
- Author
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Ben J. Hayes, Karen S. Aitken, Mark E. Cooper, Xianming Wei, Elizabeth M. Ross, Matthias Frisch, and Kai P. Voss-Fels
- Subjects
0106 biological sciences ,Breeding program ,business.industry ,General Medicine ,Biology ,Quantitative trait locus ,01 natural sciences ,Genetic architecture ,Biotechnology ,Genetic gain ,Genetic model ,Genetic variation ,Genetics ,Trait ,business ,Agronomy and Crop Science ,Selection (genetic algorithm) ,010606 plant biology & botany - Abstract
Simulations highlight the potential of genomic selection to substantially increase genetic gain for complex traits in sugarcane. The success rate depends on the trait genetic architecture and the implementation strategy. Genomic selection (GS) has the potential to increase the rate of genetic gain in sugarcane beyond the levels achieved by conventional phenotypic selection (PS). To assess different implementation strategies, we simulated two different GS-based breeding strategies and compared genetic gain and genetic variance over five breeding cycles to standard PS. GS scheme 1 followed similar routines like conventional PS but included three rapid recurrent genomic selection (RRGS) steps. GS scheme 2 also included three RRGS steps but did not include a progeny assessment stage and therefore differed more fundamentally from PS. Under an additive trait model, both simulated GS schemes achieved annual genetic gains of 2.6-2.7% which were 1.9 times higher compared to standard phenotypic selection (1.4%). For a complex non-additive trait model, the expected annual rates of genetic gain were lower for all breeding schemes; however, the rates for the GS schemes (1.5-1.6%) were still greater than PS (1.1%). Investigating cost-benefit ratios with regard to numbers of genotyped clones showed that substantial benefits could be achieved when only 1500 clones were genotyped per 10-year breeding cycle for the additive genetic model. Our results show that under a complex non-additive genetic model, the success rate of GS depends on the implementation strategy, the number of genotyped clones and the stage of the breeding program, likely reflecting how changes in QTL allele frequencies change additive genetic variance and therefore the efficiency of selection. These results are encouraging and motivate further work to facilitate the adoption of GS in sugarcane breeding.
- Published
- 2021
33. Association between atherosclerotic cardiovascular diseases risk and renal outcome in patients with type 2 diabetes mellitus
- Author
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Honghong Ren, Lijun Zhao, Junlin Zhang, Ruikun Guo, Mark E. Cooper, Yiting Wang, Rui Zhang, Jiali Wang, Lin Li, Tingli Wang, Yucheng Wu, Fang Liu, Yitao Zhu, Yutong Zou, and Huan Xu
- Subjects
Male ,China ,medicine.medical_specialty ,030232 urology & nephrology ,end-stage renal disease renal biopsy ,Disease ,atherosclerotic cardiovascular diseases ,030204 cardiovascular system & hematology ,urologic and male genital diseases ,Critical Care and Intensive Care Medicine ,Severity of Illness Index ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Diabetes mellitus ,medicine ,Humans ,Diabetic Nephropathies ,In patient ,Retrospective Studies ,Diabetic kidney ,urogenital system ,business.industry ,Type 2 Diabetes Mellitus ,General Medicine ,Middle Aged ,Atherosclerosis ,Prognosis ,medicine.disease ,diabetic kidney disease ,Diseases of the genitourinary system. Urology ,Logistic Models ,Diabetes Mellitus, Type 2 ,Cardiovascular Diseases ,Nephrology ,diabetes mellitus ,Disease Progression ,Clinical Study ,Kidney Failure, Chronic ,Female ,RC870-923 ,business ,Glomerular Filtration Rate ,Research Article ,Kidney disease - Abstract
Background Chronic kidney disease (CKD) and diabetes mellitus increase atherosclerotic cardiovascular diseases (ASCVD) risk. However, the association between renal outcome of diabetic kidney disease (DKD) and ASCVD risk is unclear. Methods This retrospective study enrolled 218 adult patients with type 2 diabetes mellitus and biopsy-proven DKD, and without known cardiovascular diseases. These patients were followed up at least 1 year. Baseline characteristics were obtained and the 10-year ASCVD risk score was calculated using the Pooled Cohort Equation (PCE). Renal outcome was defined as progression to end-stage renal disease (ESRD). The association between ASCVD risk and renal function and outcome was further analyzed with logistic regression and Cox proportional hazard analysis. Results Among all patients, the median 10-year ASCVD risk score was 14.1%. The median of ASCVD risk score in CKD stage 1, 2, 3, and 4 was 10.9%, 12.3%, 16.5%, and 14.8%, respectively (P = 0.268). Compared with patients with lower ASCVD risk(༜14.1%), those with higher ASCVD risk had lower eGFR, higher systolic blood pressure, and more severe renal interstitial inflammation. High ASCVD risk(> 14.1%) was an independent indicator of renal dysfunction in multivariable-adjusted logistic analysis(odds ratio [OR], 3.997; 95% confidence interval [CI], 1.385–11.530;P = 0.010). However, univariate and multivariate COX proportional hazard analysis showed the 10-year ASCVD risk score failed to be an independent risk factor for ESRD in patients with type 2 diabetes mellitus. Conclusions PCE can estimate ASCVD risk in patients with DKD, and DKD patients even in CKD stage 1 had comparable ASCVD risk score to patients in CKD stage 2, 3, and 4. Higher ASCVD risk indicated severe renal insufficiency, while no prognostic value of ASVCD risk for renal outcome was observed, which implied macroangiopathy and microangiopathy in patients with DKD were related, but relatively independent.
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- 2021
34. Effect of linagliptin versus placebo on cardiovascular and kidney outcomes in nephrotic-range proteinuria and type 2 diabetes: the CARMELINA randomized controlled trial
- Author
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John H. Alexander, Darren K. McGuire, Vlado Perkovic, Mark E. Cooper, Christoph Wanner, Julio Rosenstock, Robert D. Toto, Carmelina investigators, Egon Pfarr, Bernard Zinman, Odd Erik Johansen, Nicholas D. Gollop, Jyothis T. George, Steven E. Kahn, Nikolaus Marx, Maximilian von Eynatten, and Sven Schnaidt
- Subjects
linagliptin ,renal impairment ,medicine.medical_specialty ,HbA1c ,kidney disease ,Urology ,Renal function ,Type 2 diabetes ,030204 cardiovascular system & hematology ,Linagliptin ,albuminuria ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,DPP-4 inhibitor ,030212 general & internal medicine ,AcademicSubjects/MED00340 ,Transplantation ,Creatinine ,Proteinuria ,business.industry ,Original Articles ,medicine.disease ,chemistry ,Nephrology ,Albuminuria ,medicine.symptom ,business ,Nephrotic syndrome ,Kidney disease ,medicine.drug - Abstract
Background Nephrotic-range proteinuria (NRP) is associated with rapid kidney function loss and increased cardiovascular (CV) disease risk. We assessed the effects of linagliptin (LINA) on CV and kidney outcomes in people with Type 2 diabetes (T2D) with or without NRP. Methods Cardiovascular and renal microvascular outcome study with LINA randomized participants with T2D and CV disease and/or kidney disease to LINA 5 mg or placebo (PBO). The primary endpoint [time to first occurrence of 3-point major adverse cardiac events (3P-MACE)], and kidney outcomes, were evaluated by NRP status [urinary albumin:creatinine ratio (UACR) ≥2200 mg/g] at baseline (BL) in participants treated with one or more dose of study medication. Results NRP was present in 646/6979 [9.3% (LINA/PBO n = 317/n = 329); median UACR 3486 (Q1: 2746/Q3: 4941) mg/g] participants, who compared with no-NRP were younger (62.3/66.1 years) and had lower estimated glomerular filtration rate (eGFR) (39.9/56.1 mL/min/1.73 m2). Over a median of 2.2 years, 3P-MACE occurred with a 2.0-fold higher rate in NRP versus no-NRP (PBO group), with a neutral LINA effect, regardless of NRP. The composite of time to renal death, end-stage kidney disease (ESKD) or decrease of ≥40 or ≥50% in eGFR, occurred with 12.3- and 13.6-fold higher rate with NRP (PBO group); evidence of heterogeneity of effects with LINA was observed for the former [NRP yes/no: hazard ratio 0.80 (0.63–1.01)/1.25 (1.02–1.54); P-interaction 0.005], but not the latter [0.83 (0.64–1.09)/1.17 (0.91–1.51), P-interaction 0.07]. No heterogeneity was observed for renal death or ESKD [0.88 (0.64–1.21)/0.94 (0.67–1.31), P-interaction 0.79]. Glycated haemoglobin A1c (HbA1c) was significantly reduced regardless of NRP, without increasing hypoglycaemia risk. Regression to normoalbuminuria [1.20 (1.07–1.34)] and reduction of UACR ≥50% [1.15 (1.07–1.25)] from BL, occurred more frequently with LINA, regardless of NRP status (P-interactions >0.05). Conclusions Individuals with T2D and NRP have a high disease burden. LINA reduces their albuminuria burden and HbA1c, without affecting CV or kidney risk., Graphical Abstract
- Published
- 2021
35. Development and internal validation of machine learning algorithms for end-stage renal disease risk prediction model of people with type 2 diabetes mellitus and diabetic kidney disease
- Author
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Yutong Zou, Lijun Zhao, Junlin Zhang, Yiting Wang, Yucheng Wu, Honghong Ren, Tingli Wang, Rui Zhang, Jiali Wang, Yuancheng Zhao, Chunmei Qin, Huan Xu, Lin Li, Zhonglin Chai, Mark E. Cooper, Nanwei Tong, and Fang Liu
- Subjects
Machine Learning ,Diabetes Mellitus, Type 2 ,Nephrology ,Humans ,Kidney Failure, Chronic ,Diabetic Nephropathies ,General Medicine ,Critical Care and Intensive Care Medicine ,Algorithms - Abstract
Diabetic kidney disease (DKD) is the most common cause of end-stage renal disease (ESRD) and is associated with increased morbidity and mortality in patients with diabetes. Identification of risk factors involved in the progression of DKD to ESRD is expected to result in early detection and appropriate intervention and improve prognosis. Therefore, this study aimed to establish a risk prediction model for ESRD resulting from DKD in patients with type 2 diabetes mellitus (T2DM).Between January 2008 and July 2019, a total of 390 Chinese patients with T2DM and DKD confirmed by percutaneous renal biopsy were enrolled and followed up for at least 1 year. Four machine learning algorithms (gradient boosting machine, support vector machine, logistic regression, and random forest (RF)) were used to identify the critical clinical and pathological features and to build a risk prediction model for ESRD.There were 158 renal outcome events (ESRD) (40.51%) during the 3-year median follow up. The RF algorithm showed the best performance at predicting progression to ESRD, showing the highest AUC (0.90) and ACC (82.65%). The RF algorithm identified five major factors: Cystatin-C, serum albumin (sAlb), hemoglobin (Hb), 24-hour urine urinary total protein, and estimated glomerular filtration rate. A nomogram according to the aforementioned five predictive factors was constructed to predict the incidence of ESRD.Machine learning algorithms can efficiently predict the incident ESRD in DKD participants. Compared with the previous models, the importance of sAlb and Hb were highlighted in the current model.Highlights
- Published
- 2022
36. Multi-Institution Research and Education Collaboration Identifies New Antimicrobial Compounds
- Author
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Amelia A. Fuller, Amy B. Dounay, Mark A. T. Blaskovich, Kristiana Tenorio, Johannes Zuegg, Martin J. O'Donnell, Karl A. Hansford, Yanira Méndez, Sarah Burris-Hiday, Daniel G. Rivera, William L. Scott, J. Geno Samaritoni, Mark E. Cooper, Alysha G. Elliott, Douglas Schirch, and Jacob R Hitchens
- Subjects
0301 basic medicine ,Knowledge management ,Computer science ,Phenotypic screening ,Microbial Sensitivity Tests ,01 natural sciences ,Biochemistry ,Education ,03 medical and health sciences ,Minimum inhibitory concentration ,Anti-Infective Agents ,Humans ,010405 organic chemistry ,Extramural ,business.industry ,Drug discovery ,Reproducibility of Results ,Articles ,General Medicine ,Antimicrobial ,3. Good health ,0104 chemical sciences ,Antimicrobial drug ,Multiple drug resistance ,Important research ,Interinstitutional Relations ,Organizational Affiliation ,030104 developmental biology ,Molecular Medicine ,business - Abstract
New antibiotics are urgently needed to address increasing rates of multidrug resistant infections. Seventy-six diversely functionalized compounds, comprising five structural scaffolds, were synthesized and tested for their ability to inhibit microbial growth. Twenty-six compounds showed activity in the primary phenotypic screen at the Community for Open Antimicrobial Drug Discovery (CO-ADD). Follow-up testing of active molecules confirmed that two unnatural dipeptides inhibit the growth of Cryptococcus neoformans with a minimum inhibitory concentration (MIC) ≤ 8 μg/mL. Syntheses were carried out by undergraduate students at five schools implementing Distributed Drug Discovery (D3) programs. This report showcases that a collaborative research and educational process is a powerful approach to discover new molecules inhibiting microbial growth. Educational gains for students engaged in this project are highlighted in parallel to the research advances. Aspects of D3 that contribute to its success, including an emphasis on reproducibility of procedures, are discussed to underscore the power of this approach to solve important research problems and to inform other coupled chemical biology research and teaching endeavors.
- Published
- 2020
37. A risk model for relapsed/refractory aggressive NHL integrating clinical risk factors and pretransplant Deauville score
- Author
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Mark E. Cooper, Vishal Kukreti, David C. Hodgson, John Kuruvilla, Sang Eun Yoon, Ur Metser, Keren Isaev, Yael Eshet, Kyung-Han Lee, Sita Bhella, Seok Jin Kim, Anca Prica, Chae-Hong Lim, Noemie Lang, Michael Crump, Katherine Lajkosz, Robert Kridel, Ho-Young Yhim, Won Seog Kim, Richard W. Tsang, and Wei Xu
- Subjects
Oncology ,medicine.medical_specialty ,Transplantation, Autologous ,03 medical and health sciences ,0302 clinical medicine ,Autologous stem-cell transplantation ,International Prognostic Index ,Refractory ,Risk Factors ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,Humans ,Medicine ,Retrospective Studies ,Lymphoid Neoplasia ,Framingham Risk Score ,business.industry ,Lymphoma, Non-Hodgkin ,Hazard ratio ,Hematopoietic Stem Cell Transplantation ,Hematology ,Confidence interval ,B symptoms ,030220 oncology & carcinogenesis ,Cohort ,medicine.symptom ,business ,030215 immunology - Abstract
There are limited data regarding the combined value of the pretransplant Deauville score (DS) from a positron emission tomography scan and clinical risk factors in patients with relapsed/refractory aggressive non-Hodgkin lymphoma (NHL). We performed a retrospective analysis to assess the prognostic role of pretransplant DS in patients with relapsed/refractory aggressive NHL who underwent salvage chemotherapy and autologous stem cell transplantation (ASCT). We identified 174 eligible patients between January 2013 and March 2019. In multivariable analysis, pretransplant DS, B symptoms, and secondary International Prognostic Index (sIPI) were independent risk factors for event-free survival (EFS). These variables were used to derive an integrated risk score that categorized 166 patients with available information for all risk factors into 3 groups: low (n = 92; 55.4%), intermediate (n = 48; 28.9%), and high (n = 26; 15.7%). The new prognostic index showed a strong association with EFS (low-risk vs intermediate-risk hazard ratio [HR], 3.94; 95% confidence interval [CI], 2.16-7.17; P < .001; low-risk vs high-risk HR, 10.83; 95% CI, 5.81-20.19; P < .001) and outperformed models based on clinical risk factors or DS alone. These results were validated in 60 patients from an independent external cohort (low-risk vs intermediate-risk HR, 4.04; 95% CI, 1.51-10.82; P = .005; low-risk vs high-risk HR, 10.49; 95% CI, 4.11-26.73; P < .001). We propose and validate a new prognostic index that risk-stratifies patients undergoing salvage chemotherapy followed by ASCT, thereby identifying patients at high risk for posttransplant treatment failure.
- Published
- 2020
38. Contemporary Management of Heart Failure in Patients With Diabetes
- Author
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Mark E. Cooper and James Shaw
- Subjects
Blood Glucose ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Management of heart failure ,MEDLINE ,030209 endocrinology & metabolism ,Type 2 diabetes ,03 medical and health sciences ,0302 clinical medicine ,Diabetes mellitus ,Clinical investigation ,Internal Medicine ,Humans ,Hypoglycemic Agents ,Medicine ,In patient ,030212 general & internal medicine ,Intensive care medicine ,Sodium-Glucose Transporter 2 Inhibitors ,Heart Failure ,Advanced and Specialized Nursing ,Type 1 diabetes ,business.industry ,medicine.disease ,Glucose ,Diabetes Mellitus, Type 2 ,Heart failure ,business - Abstract
Both heart failure and diabetes are increasing in prevalence in Western communities. The interrelationship between these two conditions is well known, with conventional heart failure therapies including several newer drug classes providing benefit to subjects with diabetes. Furthermore, several of the more recently introduced medications for type 2 diabetes have resulted in significant cardiovascular morbidity and mortality benefits with a marked improvement in heart failure symptoms and hospital presentations as well as deaths. This review outlines current therapies used to treat patients with or at risk for heart failure and their particular role in subjects with diabetes. Newer therapies, including certain glucose-lowering medications and their benefits in treating heart failure patients with and without diabetes, are also discussed. Finally, heart failure is also observed in long-duration, aging patients with type 1 diabetes, but this clinical issue has not been as extensively explored as in patients with type 2 diabetes and warrants further clinical investigation.
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- 2020
39. Alternative kidney filtration markers and the risk of major macrovascular and microvascular events, and <scp>all‐cause</scp> mortality in individuals with type 2 diabetes in the <scp>ADVANCE</scp> trial
- Author
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Dan Wang, Neil R Poulter, Mark E. Cooper, Pavel Hamet, Min Jun, Mark Woodward, Elizabeth Selvin, Giuseppe Mancia, Sophia Zoungas, John Chalmers, Michel Marre, Stephen B. Harrap, Hyunju Kim, and Casey M. Rebholz
- Subjects
Male ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Renal function ,030209 endocrinology & metabolism ,Type 2 diabetes ,030204 cardiovascular system & hematology ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Risk Factors ,Cause of Death ,Internal medicine ,Diabetes mellitus ,Outcome Assessment, Health Care ,Humans ,Medicine ,Vascular Diseases ,Cystatin C ,Antihypertensive Agents ,Aged ,Creatinine ,biology ,business.industry ,Proportional hazards model ,Vascular disease ,Middle Aged ,medicine.disease ,Obesity ,Diabetes Mellitus, Type 2 ,chemistry ,Indapamide ,Perindopril ,biology.protein ,Drug Therapy, Combination ,Female ,beta 2-Microglobulin ,business ,Biomarkers ,Glomerular Filtration Rate - Abstract
Background Creatinine-based estimated glomerular filtration rate (eGFR) is biased in the setting of obesity and other conditions. Alternative kidney filtration markers may be useful in adults with diabetes, but few studies examined the associations with risk of clinical outcomes. Methods In the Action in Diabetes and Vascular Disease: Preterax and Diamicron Modified Release Controlled Evaluation (ADVANCE) trial, we evaluated whether baseline levels and change in eGFR based on creatinine (Cr), cystatin c (Cys), β2 -microglobulin (B2M), eGFRCr-Cys , and the average of three estimates (eGFRCr-Cys-B2M ) assessed in 7217 participants at baseline and a random sample of 640 participants at the 1 year visit are associated with clinical outcomes. We examined associations with major macrovascular and microvascular events together and separately, and all-cause mortality using Cox regression models, adjusting for established risk factors. Results Over a median follow-up of 5 years, 1313 major macrovascular (n = 748) and microvascular events (n = 637), and 743 deaths occurred. Lower levels of eGFR based on all filtration markers individually and combined were associated with 1.4 to 3.0 times higher risk of major macrovascular and microvascular events (combined and separately) and all-cause mortality. Per 30% decline in eGFRCys , eGFR Cr-Cys , and eGFRCr-Cys-B2M were associated with a > 2-fold higher risk of all clinical outcomes. Conclusions In adults with type 2 diabetes, baseline levels of eGFR based on alternative filtration markers and per 30% decline in eGFRCys , eGFR Cr-Cys , and eGFRCr-Cys-B2M were associated with clinical outcomes. Measurement of alternative filtration markers, particularly B2M in adults with type 2 diabetes may be warranted. This article is protected by copyright. All rights reserved.
- Published
- 2020
40. Sex‐specific associations between cardiovascular risk factors and myocardial infarction in patients with type 2 diabetes: The <scp>ADVANCE‐ON</scp> study
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Min Jun, Neil R Poulter, Mark Woodward, Sanne A.E. Peters, Mark E. Cooper, John Chalmers, Toshiaki Ohkuma, Pavel Hamet, and Stephen B. Harrap
- Subjects
Male ,Endocrinology, Diabetes and Metabolism ,Myocardial Infarction ,Type 2 diabetes ,030204 cardiovascular system & hematology ,MELLITUS ,0302 clinical medicine ,Endocrinology ,cardiovascular disease ,64 COHORTS ,Risk Factors ,FAILURE ,Myocardial infarction ,Hazard ratio ,Absolute risk reduction ,WOMEN ,MEN ,Cardiovascular Diseases ,Female ,type 2 diabetes ,Life Sciences & Biomedicine ,Cohort study ,medicine.medical_specialty ,DURATION ,macrovascular disease ,030209 endocrinology & metabolism ,Endocrinology & Metabolism ,03 medical and health sciences ,Sex Factors ,Internal medicine ,Diabetes mellitus ,cohort study ,Internal Medicine ,medicine ,Humans ,CORONARY-HEART-DISEASE ,METAANALYSIS ,Science & Technology ,HYPERTENSION ,business.industry ,1103 Clinical Sciences ,medicine.disease ,INDIVIDUALS ,Diabetes Mellitus, Type 2 ,Heart Disease Risk Factors ,Relative risk ,cardiovascular disease, cohort study, macrovascular disease, type 2 diabetes ,ADVANCE Collaborative Group ,business ,Body mass index ,Follow-Up Studies - Abstract
Aim To examine possible sex differences in the excess risk of myocardial infarction (MI) consequent to a range of conventional risk factors in a large-scale international cohort of patients with diabetes, and to quantify these potential differences both on the relative and absolute scales. Materials and methods Eleven thousand and sixty-five participants (42% women) with type 2 diabetes in the ADVANCE trial and its post-trial follow-up study, ADVANCE-ON, were included. Cox regression models were used to estimate hazard ratios (HRs) for associations between risk factors and MI (fatal and non-fatal) by sex, and the women-to-men ratio of HRs (RHR). Results Over a median of 9.6 years of follow-up, 719 patients experienced MI. Smoking status, smoking intensity, higher systolic blood pressure (SBP), HbA1c, total and LDL cholesterol, duration of diabetes, triglycerides, body mass index (BMI) and lower HDL cholesterol were associated with an increased risk of MI in both sexes. Furthermore, some variables were associated with a greater relative risk of MI in women than men: RHRs were 1.75 (95% CI: 1.05-2.91) for current smoking, 1.53 (1.00-2.32) for former smoking, 1.18 (1.02-1.37) for SBP, and 1.13 (95% CI, 1.003-1.26) for duration of diabetes. Although incidence rates of MI were higher in men (9.3 per 1000 person-years) compared with women (5.8 per 1000 person-years), rate differences associated with risk factors were greater in women than men, except for HDL cholesterol and BMI. Conclusions In patients with type 2 diabetes, smoking, higher SBP and longer duration of diabetes had a greater relative and absolute effect in women than men, highlighting the importance of routine sex-specific approaches and early interventions in women with diabetes.
- Published
- 2020
41. Discovery of Cephalosporin-3′-Diazeniumdiolates That Show Dual Antibacterial and Antibiofilm Effects against Pseudomonas aeruginosa Clinical Cystic Fibrosis Isolates and Efficacy in a Murine Respiratory Infection Model
- Author
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Mark A. T. Blaskovich, Vikashini Ravikumar, Mark E. Cooper, Michael J. Kelso, Johannes Zuegg, M. Reza Naimi-Jamal, Scott A. Rice, Gregory M. Cook, Ardeshir Rineh, Saul N. Faust, Wee Han Poh, Myron Christodoulides, Chen-Yi Cheung, Alysha G. Elliott, Timothy McEwan, Odel Soren, Fereshteh Azamifar, Jeremy S. Webb, and Victoria Dolange
- Subjects
0301 basic medicine ,biology ,business.industry ,medicine.drug_class ,Pseudomonas aeruginosa ,030106 microbiology ,Cephalosporin ,Antibiotics ,Biofilm ,Respiratory infection ,biochemical phenomena, metabolism, and nutrition ,medicine.disease_cause ,biology.organism_classification ,medicine.disease ,Cystic fibrosis ,3. Good health ,Microbiology ,03 medical and health sciences ,Chronic infection ,030104 developmental biology ,Infectious Diseases ,Medicine ,business ,Bacteria - Abstract
The formation of biofilms provides a formidable defense for many bacteria against antibiotics and host immune responses. As a consequence, biofilms are thought to be the root cause of most chronic infections, including those occurring on medical indwelling devices, endocarditis, urinary tract infections, diabetic and burn wounds, and bone and joint infections. In cystic fibrosis (CF), chronic Pseudomonas aeruginosa (P. aeruginosa) respiratory infections are the leading cause of morbidity and mortality in adults. Previous studies have shown that many bacteria can undergo a coordinated dispersal event in the presence of low concentrations of nitric oxide (NO), suggesting that NO could be used to initiate biofilm dispersal in chronic infections, enabling clearance of the more vulnerable planktonic cells. In this study, we describe efforts to create "all-in-one"cephalosporin-based NO donor prodrugs (cephalosporin-3′-diazeniumdiolates, C3Ds) that show both direct β-lactam mediated antibacterial activity and antibiofilm effects. Twelve novel C3Ds were synthesized and screened against a panel of P. aeruginosa CF clinical isolates and other human pathogens. The most active compound, AMINOPIP2 ((Z)-1-(4-(2-aminoethyl)piperidin-1-yl)-2-(((6R,7R)-7-((Z)-2-(2-aminothiazol-4-yl)-2-(((2-carboxypropan-2-yl)oxy)imino)acetamido)-2-carboxy-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-en-3-yl)methoxy)diazene 1-oxide)-ceftazidime 12, showed higher antibacterial potency than its parent cephalosporin and front-line antipseudomonal antibiotic ceftazidime, good stability against β-lactamases, activity against ceftazidime-resistant P. aeruginosa in vitro biofilms, and efficacy equivalent to ceftazidime in a murine P. aeruginosa respiratory infection model. The results support further evaluation of AMINOPIP2-ceftazidime 12 for P. aeruginosa lung infections in CF and a broader study of "all-in-one"C3Ds for other chronic infections.
- Published
- 2020
42. Towards a multiscale crop modelling framework for climate change adaptation assessment
- Author
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Frank Ewert, Joshua Elliott, Hyungsuk Kimm, Robert F. Grant, Graeme Hammer, Carl J. Bernacchi, C. Eduardo Vallejos, Elizabeth A. Ainsworth, Mark E. Cooper, Wang Zhou, Xinyou Yin, Bin Peng, Kaiyu Guan, Senthold Asseng, Alex Wu, Danica Lombardozzi, Evan H. DeLucia, Jinyun Tang, David M. Lawrence, James W. Jones, Amy Marshall-Colon, Carlos D. Messina, Yan Li, Zhenong Jin, David I. Gustafson, James C. Schnable, and Donald R. Ort
- Subjects
Crops, Agricultural ,0106 biological sciences ,0301 basic medicine ,Crop Physiology ,Process (engineering) ,Computer science ,Acclimatization ,Climate Change ,Climate change ,Plant Science ,Models, Biological ,01 natural sciences ,Crop ,03 medical and health sciences ,Life Science ,Predictability ,2. Zero hunger ,9. Industry and infrastructure ,business.industry ,Agricultural ecosystems ,Environmental resource management ,15. Life on land ,PE&RC ,Identification (information) ,030104 developmental biology ,13. Climate action ,Agriculture ,Climate change adaptation ,business ,010606 plant biology & botany - Abstract
Predicting the consequences of manipulating genotype (G) and agronomic management (M) on agricultural ecosystem performances under future environmental (E) conditions remains a challenge. Crop modelling has the potential to enable society to assess the efficacy of G × M technologies to mitigate and adapt crop production systems to climate change. Despite recent achievements, dedicated research to develop and improve modelling capabilities from gene to global scales is needed to provide guidance on designing G × M adaptation strategies with full consideration of their impacts on both crop productivity and ecosystem sustainability under varying climatic conditions. Opportunities to advance the multiscale crop modelling framework include representing crop genetic traits, interfacing crop models with large-scale models, improving the representation of physiological responses to climate change and management practices, closing data gaps and harnessing multisource data to improve model predictability and enable identification of emergent relationships. A fundamental challenge in multiscale prediction is the balance between process details required to assess the intervention and predictability of the system at the scales feasible to measure the impact. An advanced multiscale crop modelling framework will enable a gene-to-farm design of resilient and sustainable crop production systems under a changing climate at regional-to-global scales.
- Published
- 2020
43. Nox (NADPH Oxidase) 1, Nox4, and Nox5 Promote Vascular Permeability and Neovascularization in Retinopathy
- Author
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Karin Jandeleit-Dahm, Rhian M. Touyz, Jay C. Jha, Chris R. J. Kennedy, Devy Deliyanti, Jennifer L. Wilkinson-Berka, Mark E. Cooper, and Saeed F. Alrashdi
- Subjects
Blood Glucose ,0301 basic medicine ,medicine.medical_specialty ,Blood Pressure ,Mice, Transgenic ,Vascular permeability ,Retinal Neovascularization ,Retina ,Diabetes Mellitus, Experimental ,Capillary Permeability ,Neovascularization ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Internal Medicine ,Animals ,Medicine ,chemistry.chemical_classification ,Reactive oxygen species ,Diabetic Retinopathy ,NADPH oxidase ,biology ,business.industry ,Body Weight ,Endothelial Cells ,NADPH Oxidase 1 ,NOX4 ,Diabetic retinopathy ,medicine.disease ,Rats ,Oxidative Stress ,030104 developmental biology ,Endocrinology ,NADPH Oxidase 5 ,chemistry ,NADPH Oxidase 4 ,cardiovascular system ,030221 ophthalmology & optometry ,biology.protein ,Cattle ,medicine.symptom ,business ,Retinopathy - Abstract
Hypertension is a risk factor for the vascular permeability and neovascularization that threatens vision in diabetic retinopathy. Excess reactive oxygen species derived from the Nox (NADPH oxidase) isoforms, Nox1 and Nox4, contributes to vasculopathy in diabetic retinopathy; however, if Nox1/4 inhibition is beneficial in hypertensive diabetic retinopathy is unknown. Here, we determined that diabetic spontaneously hypertensive rats had exacerbated retinal vascular permeability and expression of angiogenic and inflammatory factors, compared with normotensive diabetic Wistar Kyoto rats. GKT136901, a specific dual inhibitor of Nox1 and Nox4, prevented these events in diabetic Wistar Kyoto rats and spontaneously hypertensive rats. Retinal neovascularization does not develop in diabetic rodents, and therefore, the oxygen-induced retinopathy model is used to evaluate this pathology. We previously demonstrated that Nox1/4 inhibition reduced retinal neovascularization in oxygen-induced retinopathy. However, although Nox5 is expressed in human retina, its contribution to retinopathy has not been studied in vivo, largely due to its absence from the rodent genome. We generated transgenic mice with inducible human Nox5 expressed in endothelial cells (vascular endothelial-cadherin + Nox5 + mice). In vascular endothelial-cadherin + Nox5 + mice with oxygen-induced retinopathy, retinal vascular permeability and neovascularization, as well as the expression of angiogenic and inflammatory factors, were increased compared with wild-type littermates. In bovine retinal endothelial cells, which express Nox1, Nox4, and Nox5, Nox1/4 inhibition, as well as Nox5 silencing RNA, reduced the high glucose–induced upregulation of oxidative stress, angiogenic, and inflammatory factors. Collectively, these data indicate the potential of Nox1, Nox4, and Nox5 inhibition to reduce vision-threatening damage to the retinal vasculature.
- Published
- 2020
44. Diabetic Retinopathy, Classified Using the Lesion-Aware Deep Learning System, Predicts Diabetic End-Stage Renal Disease in Chinese Patients
- Author
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Yutong Zou, Junlin Zhang, Lijun Zhao, Honghong Ren, Lin Li, Rui Zhang, Yiting Wang, Yana Cao, Fang Liu, Nanwei Tong, Huan Xu, Jie Zhang, Mark E. Cooper, Yucheng Wu, and Dan Meng
- Subjects
Vascular Endothelial Growth Factor A ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Urology ,Renal function ,030209 endocrinology & metabolism ,macromolecular substances ,urologic and male genital diseases ,End stage renal disease ,Diabetic nephropathy ,03 medical and health sciences ,Deep Learning ,0302 clinical medicine ,Endocrinology ,Risk Factors ,Diabetes mellitus ,medicine ,Humans ,Diabetic Nephropathies ,Longitudinal Studies ,030212 general & internal medicine ,Diabetic Retinopathy ,Proteinuria ,business.industry ,Hazard ratio ,General Medicine ,Diabetic retinopathy ,medicine.disease ,Diabetes Mellitus, Type 2 ,Kidney Failure, Chronic ,medicine.symptom ,business ,Retinopathy - Abstract
Objective: To characterize the relationship between diabetic retinopathy (DR) and diabetic nephropathy (DN) in Chinese patients and to determine whether the severity of DR predicts end-stage renal disease (ESRD). Methods: Bilateral fundic photographs of 91 Chinese type 2 diabetic patients with biopsy-confirmed DN, not in ESRD stage, were obtained at the time of renal biopsy in this longitudinal study. The baseline severity of DR was determined using the Lesion-aware Deep Learning System (RetinalNET) in an open framework for deep learning and was graded using the Early Treatment Diabetic Retinopathy Study severity scale. Cox proportional hazard models were used to estimate the hazard ratio (HR) for the effect of the severity of diabetic retinopathy on ESRD. Results: During a median follow-up of 15 months, 25 patients progressed to ESRD. The severity of retinopathy at the time of biopsy was a prognostic factor for progression to ESRD (HR 2.18, 95% confidence interval 1.05 to 4.53, P = .04). At baseline, more severe retinopathy was associated with poor renal function, and more severe glomerular lesions. However, 30% of patients with mild retinopathy and severe glomerular lesions had higher low-density lipo-protein-cholesterol and more severe proteinuria than those with mild glomerular lesions. Additionally, 3% of patients with severe retinopathy and mild glomerular changes were more likely to have had diabetes a long time than those with severe glomerular lesions. Conclusion: Although the severity of DR predicted diabetic ESRD in patients with type 2 diabetes mellitus and DN, the severities of DR and DN were not always consistent, especially in patients with mild retinopathy or microalbuminuria. Abbreviations: CI = confidence interval; DM = diabetic mellitus; DN = diabetic nephropathy; DR = diabetic retinopathy; eGFR = estimated glomerular filtration rate; ESRD = end-stage renal disease; HbA1c = hemoglobin A1c; HR = hazard ratio; NPDR = nonproliferative diabetic retinopathy; PDR = proliferative diabetic retinopathy; SBP = systolic blood pressure; T2DM = type 2 diabetes mellitus; VEGF = vascular endothelial growth factor.
- Published
- 2020
45. Renal protection: What have we learnt from ADVANCE about kidney disease in type 2 diabetes?
- Author
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Mark E. Cooper and Søren T. Knudsen
- Subjects
medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,macrovascular disease ,030209 endocrinology & metabolism ,Type 2 diabetes ,030204 cardiovascular system & hematology ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Endocrinology ,Randomized controlled trial ,cardiovascular disease ,law ,Internal medicine ,Diabetes mellitus ,Internal Medicine ,Perindopril ,medicine ,Humans ,Hypoglycemic Agents ,Antihypertensive Agents ,Randomized Controlled Trials as Topic ,antidiabetic drug ,business.industry ,diabetic nephropathy ,Indapamide ,clinical trial ,medicine.disease ,Clinical trial ,Observational Studies as Topic ,glycaemic control ,Diabetes Mellitus, Type 2 ,chemistry ,Hypertension ,Kidney Diseases ,Glycated hemoglobin ,business ,medicine.drug ,Kidney disease - Abstract
The Action in Diabetes and Vascular Disease: Preterax and Diamicron Modified Release Controlled Evaluation (ADVANCE) factorial trial was a landmark randomized controlled clinical trial in 11 140 type 2 diabetic patients from 215 centers in 20 countries with a two-by-two factorial design. In the blood pressure-lowering arm, patients were treated using a fixed combination of the ACE-inhibitor, perindopril, and the thiazide-like diuretic, indapamide, or placebo, whereas in the glucose-lowering arm, the intervention compared the sulphonylurea gliclazide plus other glucose-lowering drugs, targeting a glycated hemoglobin value of 6.5% or less, with standard glucose control. Primary end-points were major macro- and microvascular events in both arms. This review gives an overview of the results of the primary randomized trial, results from observational follow-up studies, and results of several biomarker studies and discusses the perspectives of these data in the context of recent major outcome trials for current medical treatment.
- Published
- 2020
46. Flow-cytometry detection of fluorescent magnetic nanoparticle clusters increases sensitivity of dengue immunoassay
- Author
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Mark A. T. Blaskovich, K.C. Sanjaya, Paul R. Young, Andrea Ranzoni, Daniel Watterson, Mark E. Cooper, and Jacky Hung
- Subjects
Analyte ,Nanoparticle ,02 engineering and technology ,Viral Nonstructural Proteins ,Sensitivity and Specificity ,01 natural sciences ,Biochemistry ,Analytical Chemistry ,Flow cytometry ,Paramagnetism ,Antigen ,medicine ,Humans ,Environmental Chemistry ,Spectroscopy ,Immunoassay ,Detection limit ,Chromatography ,medicine.diagnostic_test ,Chemistry ,Magnetic Phenomena ,010401 analytical chemistry ,Antibodies, Monoclonal ,Dengue Virus ,Flow Cytometry ,021001 nanoscience & nanotechnology ,Fluorescence ,0104 chemical sciences ,Nanoparticles ,0210 nano-technology ,Biomarkers - Abstract
We report a flow-cytometry based method capable of detecting a range of analytes by monitoring the analyte-induced clustering of magnetic and fluorescent nanoparticles with flow cytometry. Using the dengue viral antigen (NS1) as an example, antibodies were conjugated to magnetic and fluorescent nanoparticles in a sandwich immunoassay format. These nanoparticles formed clusters when NS1 was present in a sample and the cluster formation was directly proportional to the concentration of antigen. Simultaneous flow cytometry measurement of cluster size, as detected by the forward scatter channel, combined with fluorescence intensity led to a reduction in the assay background signal, resulting in improved analytical sensitivity. We were able to detect 2.5 ng mL−1 of NS1 in serum samples by quantifying the clusters, a two-log fold improvement in the assay limit of detection over total fluorescence quantification alone.
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- 2020
47. Effects of Intensive Glycemic Control on Clinical Outcomes Among Patients With Type 2 Diabetes With Different Levels of Cardiovascular Risk and Hemoglobin A1c in the ADVANCE Trial
- Author
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Sophia Zoungas, Toshiaki Ohkuma, Ji-Guang Wang, Mark E. Cooper, Mark Woodward, Jingyan Tian, Stephen B. Harrap, Neil R Poulter, Giuseppe Mancia, and John Chalmers
- Subjects
Advanced and Specialized Nursing ,Research design ,medicine.medical_specialty ,business.industry ,Proportional hazards model ,Vascular disease ,Endocrinology, Diabetes and Metabolism ,Hazard ratio ,030209 endocrinology & metabolism ,Type 2 diabetes ,medicine.disease ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,law ,Diabetes mellitus ,Internal medicine ,Internal Medicine ,Medicine ,030212 general & internal medicine ,business ,Glycemic - Abstract
OBJECTIVE To study whether the effects of intensive glycemic control on major vascular outcomes (a composite of major macrovascular and major microvascular events), all-cause mortality, and severe hypoglycemia events differ among participants with different levels of 10-year risk of atherosclerotic cardiovascular disease (ASCVD) and hemoglobin A1c (HbA1c) at baseline. RESEARCH DESIGN AND METHODS We studied the effects of more intensive glycemic control in 11,071 patients with type 2 diabetes (T2D), without missing values, in the Action in Diabetes and Vascular Disease: Preterax and Diamicron Modified Release Controlled Evaluation (ADVANCE) trial, using Cox models. RESULTS During 5 years’ follow-up, intensive glycemic control reduced major vascular events (hazard ratio [HR] 0.90 [95% CI 0.83–0.98]), with the major driver being a reduction in the development of macroalbuminuria. There was no evidence of differences in the effect, regardless of baseline ASCVD risk or HbA1c level (P for interaction = 0.29 and 0.94, respectively). Similarly, the beneficial effects of intensive glycemic control on all-cause mortality were not significantly different across baseline ASCVD risk (P = 0.15) or HbA1c levels (P = 0.87). The risks of severe hypoglycemic events were higher in the intensive glycemic control group compared with the standard glycemic control group (HR 1.85 [1.41–2.42]), with no significant heterogeneity across subgroups defined by ASCVD risk or HbA1c at baseline (P = 0.09 and 0.18, respectively). CONCLUSIONS The major benefits for patients with T2D in ADVANCE did not substantially differ across levels of baseline ASCVD risk and HbA1c.
- Published
- 2020
48. Integrating genetic gain and gap analysis to predict improvements in crop productivity
- Author
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Graeme Hammer, Tim Hart, Mark E. Cooper, Carla Gho, Tom Tang, and Carlos D. Messina
- Subjects
0106 biological sciences ,Yield (finance) ,Context (language use) ,04 agricultural and veterinary sciences ,Agricultural engineering ,Gap analysis ,Biology ,01 natural sciences ,Identification (information) ,Resource (project management) ,Empirical research ,Genetic gain ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Predictability ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
A Crop Growth Model (CGM) is used to demonstrate a biophysical framework for predicting grain yield outcomes for Genotype by Environment by Management (G×E×M) scenarios. This required development of a CGM to encode contributions of genetic and environmental determinants of biophysical processes that influence key resource (radiation, water, nutrients) use and yield‐productivity within the context of the target agricultural system. Prediction of water‐driven yield‐productivity of maize for a wide range of G×E×M scenarios in the U.S. corn‐belt is used as a case study to demonstrate applications of the framework. Three experimental evaluations are conducted to test predictions of G×E×M yield expectations derived from the framework: (1) A maize hybrid genetic gain study, (2) A maize yield potential study, and (3) A maize drought study. Examples of convergence between key G×E×M predictions from the CGM and the results of the empirical studies are demonstrated. Potential applications of the prediction framework for design of integrated crop improvement strategies are discussed. The prediction framework opens new opportunities for rapid design and testing of novel crop improvement strategies based on an integrated understanding of G×E×M interactions. Importantly the CGM ensures that the yield predictions for the G×E×M scenarios are grounded in the biophysical properties and limits of predictability for the crop system. The identification and delivery of novel pathways to improved crop productivity can be accelerated through use of the proposed framework to design crop improvement strategies that integrate genetic gains from breeding and crop management strategies that reduce yield gaps.
- Published
- 2020
49. Cardiovascular and kidney outcomes of linagliptin treatment in older people with type 2 diabetes and established cardiovascular disease and/or kidney disease: A prespecified subgroup analysis of the randomized, placebo‐controlled CARMELINA® trial
- Author
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Yutaka Seino, Christoph Wanner, Odd Erik Johansen, Douglas Clark, Mark E. Cooper, Julio Rosenstock, Sven Schnaidt, and Takashi Kadowaki
- Subjects
Adult ,medicine.medical_specialty ,Adolescent ,Endocrinology, Diabetes and Metabolism ,Renal function ,Linagliptin ,030209 endocrinology & metabolism ,Type 2 diabetes ,030204 cardiovascular system & hematology ,Kidney ,Placebo ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Double-Blind Method ,Internal medicine ,Internal Medicine ,medicine ,Clinical endpoint ,Humans ,Hypoglycemic Agents ,Aged ,Glycated Hemoglobin ,Dipeptidyl-Peptidase IV Inhibitors ,business.industry ,Hazard ratio ,Original Articles ,medicine.disease ,Treatment Outcome ,Diabetes Mellitus, Type 2 ,Cardiovascular Diseases ,Albuminuria ,Kidney Diseases ,Original Article ,medicine.symptom ,business ,medicine.drug ,Kidney disease - Abstract
Aims In CARMELINA®, linagliptin demonstrated cardiovascular and renal safety in patients with type 2 diabetes (T2D) with high renal and cardiovascular disease (CVD) risk. We investigated safety and efficacy of this dipeptidyl peptidase‐4 inhibitor in older participants. Materials and methods Subjects aged ≥18 years with T2D and established CVD with urinary albumin‐to‐creatinine ratio (UACR) >30 mg/g, and/or prevalent kidney disease, were randomized to linagliptin or placebo added to usual care. The primary endpoint (time to first occurrence of 3P‐MACE: cardiovascular death, non‐fatal myocardial infarction or non‐fatal stroke) and other outcomes were evaluated across age groups
- Published
- 2020
50. Light‐Activated Rhenium Complexes with Dual Mode of Action against Bacteria
- Author
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Angelo Frei, Mark A. T. Blaskovich, Maite Amado, and Mark E. Cooper
- Subjects
Methicillin-Resistant Staphylococcus aureus ,Staphylococcus aureus ,drug design ,medicine.drug_class ,Antibiotics ,Mutant ,chemistry.chemical_element ,metal-based drugs ,010402 general chemistry ,01 natural sciences ,antibiotics ,Catalysis ,Antibiotic resistance ,Coordination Complexes ,Escherichia coli ,medicine ,Antibacterial drug ,Full Paper ,biology ,010405 organic chemistry ,Organic Chemistry ,Light activated ,Dual mode ,General Chemistry ,Full Papers ,Rhenium ,biology.organism_classification ,Anti-Bacterial Agents ,0104 chemical sciences ,chemistry ,Biochemistry ,Light‐Activated Antibiotics ,Bacteria - Abstract
New antibiotics and innovative approaches to kill drug‐resistant bacteria are urgently needed. Metal complexes offer access to alternative modes of action but have only sparingly been investigated in antibacterial drug discovery. We have developed a light‐activated rhenium complex with activity against drug‐resistant S. aureus and E. coli. The activity profile against mutant strains combined with assessments of cellular uptake and synergy suggest two distinct modes of action., Shining a light on rhenium: A light‐activated rhenium complex with activity against drug‐resistant bacteria has been developed. The activity profile against mutant strains combined with assessments of cellular uptake and synergy suggest two distinct modes of action.
- Published
- 2020
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