113 results on '"Margarida Fardilha"'
Search Results
2. Advances in non-hormonal male contraception targeting sperm motility
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Noemia A P Mariani, Joana V Silva, Margarida Fardilha, and Erick J R Silva
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Reproductive Medicine ,Obstetrics and Gynecology - Abstract
BACKGROUND The high rates of unintended pregnancy and the ever-growing world population impose health, economic, social, and environmental threats to countries. Expanding contraceptive options, including male methods, are urgently needed to tackle these global challenges. Male contraception is limited to condoms and vasectomy, which are unsuitable for many couples. Thus, novel male contraceptive methods may reduce unintended pregnancies, meet the contraceptive needs of couples, and foster gender equality in carrying the contraceptive burden. In this regard, the spermatozoon emerges as a source of druggable targets for on-demand, non-hormonal male contraception based on disrupting sperm motility or fertilization. OBJECTIVE AND RATIONALE A better understanding of the molecules governing sperm motility can lead to innovative approaches toward safe and effective male contraceptives. This review discusses cutting-edge knowledge on sperm-specific targets for male contraception, focusing on those with crucial roles in sperm motility. We also highlight challenges and opportunities in male contraceptive drug development targeting spermatozoa. SEARCH METHODS We conducted a literature search in the PubMed database using the following keywords: ‘spermatozoa’, ‘sperm motility’, ‘male contraception’, and ‘drug targets’ in combination with other related terms to the field. Publications until January 2023 written in English were considered. OUTCOMES Efforts for developing non-hormonal strategies for male contraception resulted in the identification of candidates specifically expressed or enriched in spermatozoa, including enzymes (PP1γ2, GAPDHS, and sAC), ion channels (CatSper and KSper), transmembrane transporters (sNHE, SLC26A8, and ATP1A4), and surface proteins (EPPIN). These targets are usually located in the sperm flagellum. Their indispensable roles in sperm motility and male fertility were confirmed by genetic or immunological approaches using animal models and gene mutations associated with male infertility due to sperm defects in humans. Their druggability was demonstrated by the identification of drug-like small organic ligands displaying spermiostatic activity in preclinical trials. WIDER IMPLICATIONS A wide range of sperm-associated proteins has arisen as key regulators of sperm motility, providing compelling druggable candidates for male contraception. Nevertheless, no pharmacological agent has reached clinical developmental stages. One reason is the slow progress in translating the preclinical and drug discovery findings into a drug-like candidate adequate for clinical development. Thus, intense collaboration among academia, private sectors, governments, and regulatory agencies will be crucial to combine expertise for the development of male contraceptives targeting sperm function by (i) improving target structural characterization and the design of highly selective ligands, (ii) conducting long-term preclinical safety, efficacy, and reversibility evaluation, and (iii) establishing rigorous guidelines and endpoints for clinical trials and regulatory evaluation, thus allowing their testing in humans.
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- 2023
3. Supplementary File 1 from Novel Indole-based Tambjamine-Analogues Induce Apoptotic Lung Cancer Cell Death through p38 Mitogen-Activated Protein Kinase Activation
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Ricardo Pérez-Tomás, Vanessa Soto-Cerrato, Roberto Quesada, Juan Moya, Margarida Fardilha, Ricard Ramos, Ananda M. Rodilla, David Martínez-García, Alberto Villanueva, Elsa Hernando, Luís Korrodi-Gregório, and Pilar Manuel-Manresa
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QIAGEN Cancer Drug Targets Array file containing the raw data (Ct information) for the qPCR of all the conditions (both A549 and SW900 cell lines).
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- 2023
4. Supplementary Figures S1-S42, Supplementary Tables S1-S2, and Supplementary Materials and Methods from Novel Indole-based Tambjamine-Analogues Induce Apoptotic Lung Cancer Cell Death through p38 Mitogen-Activated Protein Kinase Activation
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Ricardo Pérez-Tomás, Vanessa Soto-Cerrato, Roberto Quesada, Juan Moya, Margarida Fardilha, Ricard Ramos, Ananda M. Rodilla, David Martínez-García, Alberto Villanueva, Elsa Hernando, Luís Korrodi-Gregório, and Pilar Manuel-Manresa
- Abstract
Supplementary Figures: Figure S1. Set of tambjamine analogues investigated; Figure S2. General reaction scheme; Figure S3. 1H NMR (DMSO-d6) of compound 3.HCl; Figure S4. 13C (DMSO-d6) of compound 3.HCl; Figure S5. HRMS (EI) of compound 3; Figure S6. 1H NMR (DMSO-d6) of compound 4.HCl; Figure S7. 13C (DMSO-d6) of compound 4.HCl; Figure S8. 13C dept (DMSO-d6) of compound 4.HCl; Figure S9. HRMS (EI) of compound 4.; Figure S10. 1H NMR (CDCl3) of compound 5.HCl; Figure S11. 13C NMR (CDCl3) of compound 5.HCl; Figure S12. 13C dept NMR (CDCl3) of compound 5.HCl; Figure S13. HRMS (EI) of compound 5.; Figure S14. 1H NMR (CDCl3) of compound 6.HCl; Figure S15. 13C NMR (CDCl3) of compound 6.HCl; Figure S16. HRMS (EI) of compound 6.; Figure S17. 1H NMR (CDCl3) of compound 7.HCl; Figure S18. 13C NMR (CDCl3) of compound 7.HCl; Figure S19. 13C dept NMR (CDCl3) of compound 7.HCl; Figure S20. HRMS (EI) of compound 7.; Figure S21. 1H NMR (CDCl3) of compound 8.HCl; Figure S22. 13C NMR (CDCl3) of compound 8.HCl; Figure S23. 13C dept NMR (CDCl3) of compound 8.HCl; Figure S24. HRMS (EI) of compound 8.; Figure S25. 1H NMR (CDCl3) of compound 9.HCl; Figure S26. 13C NMR (CDCl3) of compound 9.HCl; Figure S27. 13C dept NMR (CDCl3) of compound 9.HCl; Figure S28. HRMS (EI) of compound 9.; Figure S29. 1H NMR (CDCl3) of compound 10.HCl; Figure S30. 13C NMR (CDCl3) of compound 10.HCl; Figure S31. 13C dept NMR (CDCl3) of compound 10.HCl; Figure S32. HRMS (EI) of compound 10; Figure S33. 1H NMR (CDCl3) of compound 11.HOAc; Figure S34. 13C NMR (CDCl3) of compound 11.HOAc; Figure S35. 13C dept NMR (CDCl3) of compound 11.HOAc; Figure S36. HRMS (EI) of compound 11; Figure S37. Dose response curves in A549, DMS53, SW900 and H460 cells; Figure S38. Dose response curves in human lung tumor-derived primay cultures; Figure S39. Array validation using TaqMan gene expression assays; Figure S40. Cell cycle assay by flow cytometry; Figure S41. Western blot of apoptotic markers in the DMS53 cell line; Figure S42. Body weight recording; Supplementary Tables: Table S1. Applied biosystem probes list used for the TaqMan gene expression assays; Table S2. List of altered genes in the cancer drug targets QIAGEN RT2 Profiler Array for the SW900 cell line; Supplementary Materials and Methods: Synthesis and characterization; Cell viability; TaqMan assays; Gene expression; Cell cycle; Western blot; Mice weight.
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- 2023
5. CAVPENET Decreases Prostate Cancer Cells Proliferation and Invasion through Modulation of Protein Phosphatase Activity
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Bárbara Matos, John Howl, Carmen Jerónimo, and Margarida Fardilha
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- 2023
6. INCORPORATION OF DIFFERENT AND PURPOSEFUL STUDENTS’ ENGAGEMENT STRATEGIES TO ACHIEVE DEEP LEARNING EXPERIENCES
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Bárbara Matos, Lurdes Gonçalves, Mário Rodrigues, Fernando Ribeiro, Vânia Carlos, and Margarida Fardilha
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- 2023
7. TLR7 and TLR8 evolution in lagomorphs: different patterns in the different lineages
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Fabiana Neves, João Pedro Marques, Helena Areal, Patrícia Pinto-Pinho, Bruno Colaço, José Melo-Ferreira, Margarida Fardilha, Joana Abrantes, and Pedro José Esteves
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Toll-Like Receptor 7 ,Toll-Like Receptor 8 ,Immunology ,Genetics ,Animals ,Lagomorpha ,Rabbits ,Hares - Abstract
Toll-like receptors (TLRs) are one of the most ancient and widely studied innate immune receptors responsible for host defense against invading pathogens. Among the known TLRs, TLR7 and TLR8 sense and recognize single-stranded (ss) RNAs with a dynamic evolutionary history. While TLR8 was lost in birds and duplicated in turtles and crocodiles, TLR7 is duplicated in some birds, but in other tetrapods, there is only one copy. In mammals, with the exception of lagomorphs, TLR7 and TLR8 are highly conserved. Here, we aim to study the evolution of TLR7 and TLR8 in mammals, with a special focus in the order Lagomorpha. By searching public sequence databases, conducting evolutionary analysis, and evaluating gene expression, we were able to confirm that TLR8 is absent in hares but widely expressed in the European rabbit. In contrast, TLR7 is absent in the European rabbit and quite divergent in hares. Our results suggest that, in lagomorphs, more in particular in leporids, TLR7 and TLR8 genes have evolved faster than in any other mammalian group. The long history of interaction with viruses and their location in highly dynamic telomeric regions might explain the pattern observed.
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- 2022
8. Effects of testosterone and exercise training on bone microstructure of rats
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Catarina Jota-Baptista, Ana I. Faustino-Rocha, Margarida Fardilha, Rita Ferreira, Paula A. Oliveira, Marta Regueiro-Purriños, José A. Rodriguez-Altonaga, José M. Gonzalo-Orden, and Mário Ginja
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General Veterinary - Abstract
Background and Aim: Male hypogonadism results from failure to produce physiological levels of testosterone. Testosterone in men is essential in masculine development, sperm production, and adult man's health. Osteoporosis is one of the consequences of hypogonadism. Regular physical exercise and exogenous testosterone administration are frequently used to prevent or treat this condition. This study aimed to understand the effects of lifelong exercise training and testosterone levels (isolated and together) in the main bone structure parameters. Materials and Methods: A total of 24 rats were used and randomly divided into four groups: Control group (CG; n=6), exercised group (EG, n=6), testosterone group (TG, n=6), and testosterone EG (TEG, n=6). A micro-computed tomography equipment was used to evaluate 15 bone parameters. Results: Both factors (exercise training and testosterone) seem to improve the bone resistance and microstructure, although in different bone characteristics. Testosterone influenced trabecular structure parameters, namely, connectivity density, trabecular number, and trabecular space. The exercise promoted alterations in bone structure as well, although, in most cases, in different bone structure parameters as bone mineral density and medullar mineral density. Conclusion: Overall, exercise and testosterone therapy seems to have a synergistic contribution to the general bone structure and resistance. Further studies are warranted, comparing different individual factors, as gender, lifestyle, or testosterone protocols, to constantly improve the medical management of hypogonadism (and osteoporosis).
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- 2022
9. Gold nanoparticle probes for colorimetric detection of plasma galectin-3: a simple and rapid approach
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Maria António, Tânia Lima, Rita Ferreira, Margarida Fardilha, José Mesquita Bastos, Rui Vitorino, and Ana L. Daniel-da-Silva
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General Chemical Engineering ,General Engineering ,Analytical Chemistry - Abstract
First colorimetric and low-cost approach for detecting and quantifying galectin-3 using gold nanoparticles (AuNPs) bioconjugated with Gal-3 antibody.
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- 2023
10. Differential Proteomic Analysis of Human Sperm: A Systematic Review to Identify Candidate Targets to Monitor Sperm Quality
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Pedro O. Corda, Jéssica Moreira, John Howl, Pedro F. Oliveira, Margarida Fardilha, and Joana Vieira Silva
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Psychiatry and Mental health ,Aging ,Reproductive Medicine ,Urology ,Health Policy ,Public Health, Environmental and Occupational Health ,Pharmacology (medical) - Published
- 2023
11. All you need to know about sperm RNAs
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Joana Santiago, Manuel A. S. Santos, Margarida Fardilha, Joana Silva, and John Howl
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Male ,media_common.quotation_subject ,Population ,Fertility ,Biology ,Male infertility ,Histones ,Transcriptome ,Pregnancy ,medicine ,Animals ,Humans ,Epigenetics ,education ,Infertility, Male ,media_common ,Genetics ,education.field_of_study ,Obstetrics and Gynecology ,RNA ,medicine.disease ,Spermatozoa ,Sperm ,Protamine ,Reproductive Medicine ,biology.protein ,Female - Abstract
BACKGROUNDSpermatogenesis generates a small and highly specialised type of cell that is apparently incapable of transcription and translation. For many years, this dogma was supported by the assumption that (i) the compact sperm nucleus, resulting from the substitution of histones by protamine during spermatogenesis, renders the genome inaccessible to the transcriptional machinery; and (ii) the loss of most organelles, including endoplasmic reticulum and ribosomes, limits or prevents translational activity. Despite these observations, several types of coding and non-coding RNAs have been identified in human sperm. Their functional roles, particularly during fertilisation and embryonic development, are only now becoming apparent.OBJECTIVE AND RATIONALEThis review aimed to summarise current knowledge of the origin, types and functional roles of sperm RNAs, and to evaluate the clinical benefits of employing these transcripts as biomarkers of male fertility and reproductive outcomes. The possible contribution of sperm RNAs to intergenerational or transgenerational phenotypic inheritance is also addressed.SEARCH METHODSA comprehensive literature search on PubMed was conducted using the search terms ‘sperm’ AND ‘RNA’. Searches focussed upon articles written in English and published prior to August 2020.OUTCOMESThe development of more sensitive and accurate RNA technologies, including RNA sequencing, has enabled the identification and characterisation of numerous transcripts in human sperm. Though a majority of these RNAs likely arise during spermatogenesis, other data support an epididymal origin of RNA transmitted to maturing sperm by extracellular vesicles. A minority may also be synthesised by de novo transcription in mature sperm, since a small portion of the sperm genome remains packed by histones. This complex RNA population has important roles in paternal chromatin packaging, sperm maturation and capacitation, fertilisation, early embryogenesis and developmental maintenance. In recent years, additional lines of evidence from animal models support a role for sperm RNAs in intergenerational or transgenerational inheritance, modulating both the genotype and phenotype of progeny. Importantly, several reports indicate that the sperm RNA content of fertile and infertile men differs considerably and is strongly modulated by the environment, lifestyle and pathological states.WIDER IMPLICATIONSTranscriptional profiling has considerable potential for the discovery of fertility biomarkers. Understanding the role of sperm transcripts and comparing the sperm RNA fingerprint of fertile and infertile men could help to elucidate the regulatory pathways contributing to male factor infertility. Such data might also provide a molecular explanation for several causes of idiopathic male fertility. Ultimately, transcriptional profiling may be employed to optimise ART procedures and overcome some of the underlying causes of male infertility, ensuring the birth of healthy children.
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- 2021
12. Organoids of the male reproductive system: Challenges, opportunities, and their potential use in fertility research
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Daniela Patrício, João Mano, Margarida Fardilha, and Joana Santiago
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Organoids are units of function of a given organ able to reproduce, in culture, a biological structure similar in architecture and function to its counterpart in vivo. Today, it is possible to develop an organoid from a fragment of tissue, a stem cell located in an adult organ, an embryonic stem cell, or an induced pluripotent stem cell. In the past decade, many organoids have been developed which mimic stomach, pancreas, liver and brain tissues, optic cups, among many others. Additionally, different male reproductive system organs have already been developed as organoids, including the prostate and testis. These 3D cultures may be of great importance for urological cancer research and have the potential to be used in fertility research for the study of spermatozoa production and maturation, germ cells-somatic cells interactions, and mechanisms of disease. They also provide an accurate preclinical pipeline for drug testing and discovery, as well as for the study of drug resistance. In this work, we revise the current knowledge on organoid technology and its use in healthcare and research, describe the male reproductive system organoids and other biomaterials already developed, and discuss their current application. Finally, we highlight the research gaps, challenges, and opportunities in the field and propose strategies to improve the use of organoids for the study of male infertility situations. This article is categorized under: Reproductive System DiseasesStem Cells and Development Reproductive System DiseasesBiomedical Engineering.
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- 2022
13. Appraising Animal Models of Prostate Cancer for Translational Research: Future Directions
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ELISABETE NASCIMENTO-GONCALVES, FERNANDA SEIXAS, RUI M. GIL DA COSTA, MARIA JOAO PIRES, MARIA JOAO NEUPARTH, DANIEL MOREIRA-GONCALVES, MARGARIDA FARDILHA, ANA I. FAUSTINO-ROCHA, BRUNO COLACO, RITA FERREIRA, and PAULA A. OLIVEIRA
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Cancer Research ,Oncology ,General Medicine - Abstract
The growing incidence of prostate cancer has prompted a great investment in basic biology and translational studies to develop new therapies. Multiple animal models have been established to study etiological factors, cancer-preventive strategies and the molecular determinants of aggressiveness and metastases. The rat model of prostate cancer induced by chemical carcinogen N-methyl-N-nitrosourea (MNU) and testosterone exposure has become an important tool to study prostatic carcinogenesis and chemopreventive approaches. Over prolonged treatment, this model develops prostatic lesions that closely mimic those observed in human patients. By modifying the experimental conditions, different research groups have been able to induce a vast spectrum of lesions, ranging from early prostatic intraepithelial neoplasia to metastatic cancer. These carefully tuned experimental settings allowed researchers to test lifestyle interventions, and different pharmacological and chemopreventive strategies. However, this model's great flexibility requires careful planning to ensure that the experimental conditions are adequate to obtain the spectrum of lesions intended. The present review addresses such issues, highlighting the value of the rat prostate cancer model and the multiple challenges and opportunities it offers to researchers worldwide.
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- 2022
14. Long-Term Aerobic Training Improves Mitochondrial and Antioxidant Function in the Liver of Wistar Rats Preventing Hepatic Age-Related Function Decline
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Mónica Garcia Silva, Paulo Nunes, Paula Oliveira, Rita Ferreira, Margarida Fardilha, Daniel Moreira-Gonçalves, José Alberto Duarte, Maria Manuel Oliveira, and Francisco Peixoto
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General Immunology and Microbiology ,biochemistry ,aerobic training ,mitochondria ,antioxidant enzymes ,oxidative stress ,ageing ,liver ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology - Abstract
Most studies on the effects of physical exercise have focused on its influence on muscle tissue, forgetting its interference in liver function. Ageing leads to the progressive impairment of hepatic functions. Several biochemical and bioenergetics parameters were determined to test the impact of a lifelong aerobic training program in the hepatic age-related and the development of an adaptative response. Liver samples were collected from 28 male Wistar rats (4-week-old, 159.4 ± 11.9 g at the beginning of the protocol), randomly distributed into two groups: non-exercised or exercised and submitted to a treadmill exercise program (60 min/day, 5 days/week, at 70% of maximal running speed), for 24 (n = 9) or 54 weeks (n = 10). A maximal running speed test was performed to determine the training speed. Antioxidant enzyme activity, cellular redox status, oxidative stress, mitochondrial respiratory chain enzymes and respiratory activity were performed in liver samples. Lifelong exercise decreased the age-associated decline in mitochondrial dysfunction, increasing the respiratory rate in state 2 (mitochondrial respiration stimulated by the substrate in the absence of added ADP) (p = 0.03) and citrate synthase enzymatic activity (p = 0.007). Complex II (p < 0.0001) and IV (p < 0.001) showed a decrease in enzymatic activity. Ageing-related oxidative stress was also attenuated by physical exercise, as showed by the increase in first-line defense antioxidant enzymes (superoxide dismutase (p = 0.07) and catalase (p = 0.03)), decreased lipid peroxidation levels (p = 0.864 for total fraction, p = 0,27 for mitochondrial fraction) and higher glutathione reduced/oxidized ratio (p = 0.02). According to our results, the regular practice of exercise can prevent the liver’s mitochondrial dysfunction and loss of antioxidant system efficacy that may arise from ageing, highlighting the benefit of lifelong aerobic exercise in preventing age-related hepatic impairment and associated diseases.
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- 2022
15. Bovine semen sexing: Sperm membrane proteomics as candidates for immunological selection of X‐ and Y‐chromosome‐bearing sperm
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Joana Santiago, António Rocha, G. Lopes, Margarida Fardilha, Joana Quelhas, and Bárbara Matos
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Male ,Proteomics ,endocrine system ,X Chromosome ,Sperm membrane ,Veterinary medicine ,medicine.medical_treatment ,Semen ,Review ,Sexing ,Computational biology ,Biology ,plasma membrane ,Y chromosome ,sperm ,Y Chromosome ,SF600-1100 ,medicine ,Animals ,Sex Preselection ,Selection (genetic algorithm) ,General Veterinary ,urogenital system ,bovine ,sexed semen ,Artificial insemination ,Spermatozoa ,Sperm ,Cattle - Abstract
The use of sexed semen in dairy and beef farms ensures the production of animals of the desired sex, resulting in a reduction of costs and an improvement of environmental sustainability. Several methods have been developed over the years, but most of them were abandoned due to their limited efficacy. Currently, the only commercially available method for the separation of X‐ and Y‐chromosome‐bearing sperm is fluorescence‐activated cell sorting. However, this technique is expensive and has limited usefulness for the industry, considering that it cannot produce doses of sexed semen with the desired number of sperm for artificial insemination. Immunological methods have emerged as an attractive alternative to flow cytometry and proteomic knowledge of X‐ and Y‐sperm could be useful to the development of a new method. In this review, we identify the main applications of sexed semen, describe the existing methods and highlight future research opportunities in the field. We consider that immunological methods, based on sperm cell's surface proteins differentially expressed between X‐ and Y‐sperm, could be an interesting and promising approach to semen sexing., Immunological methods have emerged as an attractive alternative to flow cytometry and proteomic knowledge of X‐ and Y‐sperm could be useful to the development of a new method. In this review we identify the main applications of sexed semen, describe the existing methods and highlight the future research opportunities in the field. We consider that immunological methods, based on sperm cell's surface proteins, deferentially expressed between X‐ and Y‐sperm could be an interesting and promising approach to sex selection.
- Published
- 2021
16. Disruption of protein phosphatase 1 complexes with the use of bioportides as a novel approach to target sperm motility
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SJ Publicover, Giorgio Colombo, Srinivasan Vijayaraghavan, Maria João Freitas, Sarah Jones, Joana Santiago, Sofia Guimaraes, John Howl, Margarida Fardilha, and Joana Silva
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chemistry.chemical_classification ,endocrine system ,urogenital system ,Chemistry ,Protein phosphatase inhibitor-2 ,Obstetrics and Gynecology ,Motility ,Protein phosphatase 1 ,Peptide ,Flagellum ,Sperm ,Protein–protein interaction ,Cell biology ,Reproductive Medicine ,reproductive and urinary physiology ,Sperm motility - Abstract
Objective To design protein phosphatase 1 (PP1)–disrupting peptides covalently coupled to inert cell-penetrating peptides (CPPs) as sychnologically organized bioportide constructs as a strategy to modulate sperm motility. Design Experimental study. Setting Academic research laboratory. Patient(s)/Animal(s) Normozoospermic men providing samples for routine analysis and Holstein Frisian bulls. Intervention(s) None. Main Outcome Measure(s) Effect of the bioportides on the activity and interactions of PP1γ2—a PP1 isoform expressed exclusively in testicular germ cells and sperm—and on sperm vitality and motility. Result(s) PP1-disrupting peptides were designed based on the sequences from: 1) a sperm-specific PP1 interactor (A kinase anchor protein 4); and 2) a PP1 inhibitor (protein phosphatase inhibitor 2). Those sequences were covalently coupled to inert CPPs as bioportide constructs, which were successfully delivered to the flagellum of sperm cells to induce a marked impact on PP1γ2 activity and sperm motility. Molecular modeling studies further facilitated the identification of an optimized PP1-binding sequence and enabled the development of a modified stop-sperm bioportide with reduced size and increased potency of action. In addition, a bioportide mimetic of the unique 22-amino acid C-terminus of PP1γ2 accumulated within spermatozoa to significantly reduce sperm motility and further define the PP1γ2-specific interactome. Conclusion(s) These investigations demonstrate the utility of CPPs to deliver peptide sequences that target unique protein-protein interactions in spermatozoa to achieve a significant impact upon spermatozoa motility, a key prognostic indicator of male fertility.
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- 2021
17. A peptide-centric approach to analyse quantitative proteomics data- an application to prostate cancer biomarker discovery
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Tania Lima, João Eduardo Rodrigues, Bruno Manadas, Rui Henrique, Margarida Fardilha, and Rui Vitorino
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Male ,Proteomics ,Proteome ,Biophysics ,Prostate ,Biomarkers, Tumor ,Humans ,Prostatic Neoplasms ,Peptides ,Biochemistry - Abstract
Bottom-up proteomics is a popular approach in molecular biomarker research. However, protein analysts have realized the limitations of protein-based approaches for identifying and quantifying proteins in complex samples, such as the identification of peptides sequences shared by multiple proteins and the difficulty in identifying modified peptides. Thus, there are many exciting opportunities to improve analysis methods. Here, an alternative method focused on peptide analysis is proposed as a complement to the conventional proteomics data analysis. To investigate this hypothesis, a peptide-centric approach was applied to reanalyse a urine proteome dataset of samples from prostate cancer patients and controls. The results were compared with the conventional protein-centric approach. The relevant proteins/peptides to discriminate the groups were detected based on two approaches, p-value and VIP values obtained by a PLS-DA model. A comparison of the two strategies revealed high inconsistency between protein and peptide information and greater involvement of peptides in key PCa processes. This peptide analysis unveiled discriminative features that are lost when proteins are analyzed as homogeneous entities. This type of analysis is innovative in PCa and integrated with the widely used protein-centric approach might provide a more comprehensive view of this disease and revolutionize biomarker discovery. SIGNIFICANCE: In this study, the application of a protein and peptide-centric approaches to reanalyse a urine proteome dataset from prostate cancer (PCa) patients and controls showed that many relevant proteins/peptides are missed by the conservative nature of p-value in statistical tests, therefore, the inclusion of variable selection methods in the analysis of the dataset reported in this work is fruitful. Comparison of protein- and peptide-based approaches revealed a high inconsistency between protein and peptide information and a greater involvement of peptides in key PCa processes. These results provide a new perspective to analyse proteomics data and detect relevant targets based on the integration of peptide and protein information. This data integration allows to unravel discriminative features that normally go unnoticed, to have a more comprehensive view of the disease pathophysiology and to open new avenues for the discovery of biomarkers.
- Published
- 2022
18. Tracking Prostate Carcinogenesis over Time through Urine Proteome Profiling in an Animal Model: An Exploratory Approach
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Alexandra Moreira-Pais, Rita Nogueira-Ferreira, Stephanie Reis, Susana Aveiro, António Barros, Tânia Melo, Bárbara Matos, José Duarte, Fernanda Seixas, Pedro Domingues, Francisco Amado, Margarida Fardilha, Paula Oliveira, Rita Ferreira, and Rui Vitorino
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Male ,Aging ,GeLC-MS/MS ,Proteome ,Carcinogenesis ,Organic Chemistry ,Prostate ,Prostatic Neoplasms ,General Medicine ,Catalysis ,Computer Science Applications ,Inorganic Chemistry ,Disease Models, Animal ,Cadherin-2 ,Urinary proteomics ,Retinol-binding protein 4 ,Tandem Mass Spectrometry ,Prostate adenocarcinoma ,Animals ,aging ,urinary proteomics ,prostate adenocarcinoma ,retinol-binding protein 4 ,cadherin-2 ,enolase-1 ,Enolase-1 ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy - Abstract
Prostate cancer (PCa) is one of the most lethal diseases in men, which justifies the search for new diagnostic tools. The aim of the present study was to gain new insights into the progression of prostate carcinogenesis by analyzing the urine proteome. To this end, urine from healthy animals and animals with prostate adenocarcinoma was analyzed at two time points: 27 and 54 weeks. After 54 weeks, the incidence of pre-neoplastic and neoplastic lesions in the PCa animals was 100%. GeLC-MS/MS and subsequent bioinformatics analyses revealed several proteins involved in prostate carcinogenesis. Increased levels of retinol-binding protein 4 and decreased levels of cadherin-2 appear to be characteristic of early stages of the disease, whereas increased levels of enolase-1 and T-kininogen 2 and decreased levels of isocitrate dehydrogenase 2 describe more advanced stages. With increasing age, urinary levels of clusterin and corticosteroid-binding globulin increased and neprilysin levels decreased, all of which appear to play a role in prostate hyperplasia or carcinogenesis. The present exploratory analysis can be considered as a starting point for studies targeting specific human urine proteins for early detection of age-related maladaptive changes in the prostate that may lead to cancer. info:eu-repo/semantics/publishedVersion
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- 2022
19. The mammalian two-hybrid system as a powerful tool for high-throughput drug screening
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Margarida Fardilha and Daniela Patrício
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0301 basic medicine ,Pharmacology ,Drug ,Computer science ,Drug screens ,media_common.quotation_subject ,fungi ,Throughput ,Cell Communication ,Computational biology ,High-Throughput Screening Assays ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Hybrid system ,Protein Interaction Mapping ,Drug Discovery ,Animals ,Humans ,Protein Binding ,Signal Transduction ,media_common - Abstract
Protein-protein interactions (PPIs) are the backbone of signaling pathways, responsible for the basis of cell communication and, when deregulated, several diseases. Consequently, identifying and modulating PPIs can unravel the pathophysiological mechanisms of diseases. The two-hybrid system, particularly the mammalian two-hybrid system (MTH), is an efficient technique to validate PPIs ex vivo. Combining MTH with high-throughput screening has a huge advantage in biomedical research. In this review, we describe methodologies developed from MTH and the role of these adaptations in PPI discovery. We also highlight the powerful contribution of MTH to the identification of disease-related PPIs and its use in the development of potential new drug screens.
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- 2020
20. Integration of Automatic Text Mining and Genomic and Proteomic Analysis to Unravel Prostate Cancer Biomarkers
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Tânia Lima, Rita Ferreira, Marina Freitas, Rui Henrique, Rui Vitorino, and Margarida Fardilha
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Male ,Proteomics ,Biomarkers, Tumor ,Prostate ,Data Mining ,Humans ,Prostatic Neoplasms ,General Chemistry ,Genomics ,Biochemistry - Abstract
Prostate cancer (PCa) is the most prevalent noncutaneous cancer among men. The limited accuracy and/or invasive nature of the current diagnostic tools have driven the demand for new and noninvasive biomarkers. Urine as a noninvasive sample that contains prostatic secretions is a promising source of PCa markers. The automatic text-mining functionality of VOSviewer was used to retrieve and create co-occurrence networks of terms associated with PCa. These results were complemented with DisGENET data, a repository of PCa associations, and with a recent bioinformatic analysis integrating all differentially expressed proteins identified in tumor tissue and urine from PCa patients to address the limited term selection of VOSviewer. Afterward, the results were integrated with gene expression data from the Gene Expression Omnibus database to correlate gene and protein levels. This study suggests AXIN2, GSTM2, KLK3, LGALS3, MSMB, PRTFDC1, and SH3RF1 as important entities in PCa context. KLK, LGALS3, and MSMB proteins are common to a previous bioinformatic analysis, and a concordance was found between the levels of gene and protein expression. The applicability of the pipeline presented here was validated by showing altered urinary levels of galectin-3 protein in PCa patients compared to noncancer subjects.
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- 2022
21. Stress response pathways in the male germ cells and gametes
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Manuel A. S. Santos, Joana Silva, Margarida Fardilha, and Joana Santiago
- Subjects
Male ,Protein Folding ,endocrine system ,Embryology ,Apoptosis ,Cellular stress ,Unfolded proteins ,Mitochondrion ,Biology ,Endoplasmic Reticulum ,Unfolded protein response ,03 medical and health sciences ,Cytosol ,0302 clinical medicine ,Downregulation and upregulation ,Testis ,Genetics ,Protein biosynthesis ,Animals ,Humans ,Molecular Biology ,Transcription factor ,Infertility, Male ,Heat-shock response ,030304 developmental biology ,0303 health sciences ,030219 obstetrics & reproductive medicine ,Endoplasmic reticulum ,Obstetrics and Gynecology ,Cell Biology ,Spermatozoa ,Mitochondria ,Cell biology ,Fertility ,Gene Expression Regulation ,Reproductive Medicine ,Male fertility ,Unfolded Protein Response ,Signal transduction ,Heat-Shock Response ,Transcription Factors ,Developmental Biology - Abstract
The unfolded protein response (UPR) is a conserved and essential cellular pathway involved in protein quality control that is activated in response to several cellular stressors such as diseases states, ageing, infection and toxins. The cytosol, endoplasmic reticulum (ER) and mitochondria are continuously exposed to new proteins and in situations of aberrant protein folding; one of three lines of defence may be activated: (i) heat-shock response, (ii) mitochondrial UPR and (iii) ER UPR. These pathways lead to different signal transduction mechanisms that activate or upregulate transcription factors that, in turn, regulate genes that increase the cell's ability to correct the conformation of poorly folded proteins or, ultimately, lead to apoptosis. Despite the recent progress in understanding such biological processes, few studies have focused on the implications of the UPR in male infertility, highlighting the need for a first approach concerning the presence of these components in the male reproductive system. In testis, there is a high rate of protein synthesis, and the UPR mechanisms are well described. However, the presence of these mechanisms in spermatozoa, apparently transcriptionally inactive cells, is contentious, and it is unclear how sperm cells deal with stress. Here, we review current concepts and mechanisms of the UPR and highlight the relevance of these stress response pathways in male fertility, especially the presence and functional activation of those components in male germinal cells and spermatozoa.
- Published
- 2019
22. The Oncogenic Potential of TCTEX1D4 is Modulated by the Phosphoprotein Phosphatase PP1
- Author
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Juliana Felgueiras, Luís Sousa, Ana Luísa Luísa Teixeira, Bárbara Regadas, Luís Korrodi-Gregório, Georg Luers, Ann-Kristin Ahlers, Rui Medeiros, and Margarida Fardilha
- Subjects
macromolecular substances - Abstract
Protein phosphatase 1 (PP1) regulates several cellular events via interaction with multiple regulatory subunits. The human prostate proteome includes various PP1-interacting proteins; however, a very limited number of interactions is yet characterized and their role in prostate tumorigenesis remains poorly understood. Tctex1 domain-containing protein 4 (TCTEX1D4) was previously identified as a PP1-interacting protein, but its function, as well as the relevance of its interaction with PP1, are virtually unknown. In this study we addressed the role of the PP1/TCTEX1D4 complex in prostate tumorigenesis. We found distinct expression levels and subcellular distributions for TCTEX1D4 and PP1γ in human prostate epithelial normal-like and malignant cells. Moreover, we showed that TCTEX1D4 participates in the regulation of cell proliferation and modulation of microRNAs expression and that its interaction with PP1 controls its function. Taken together, our study provides first evidence for the involvement of the PP1/TCTEX1D4 complex in prostate tumorigenesis.
- Published
- 2021
23. PP1, PP2A and PP2B Interplay in the Regulation of Sperm Motility: Lessons from Protein Phosphatase Inhibitors
- Author
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Ana F. Ferreira, Joana Santiago, Joana V. Silva, Pedro F. Oliveira, and Margarida Fardilha
- Subjects
Male ,Epididymis ,Calcineurin ,Organic Chemistry ,General Medicine ,Spermatozoa ,Catalysis ,Computer Science Applications ,Inorganic Chemistry ,Semen ,Protein Phosphatase 1 ,Sperm Motility ,Humans ,Female ,Protein Phosphatase 2 ,Enzyme Inhibitors ,Phosphorylation ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy - Abstract
Male fertility relies on the ability of spermatozoa to fertilize the egg in the female reproductive tract (FRT). Spermatozoa acquire activated motility during epididymal maturation; however, to be capable of fertilization, they must achieve hyperactivated motility in the FRT. Extensive research found that three protein phosphatases (PPs) are crucial to sperm motility regulation, the sperm-specific protein phosphatase type 1 (PP1) isoform gamma 2 (PP1γ2), protein phosphatase type 2A (PP2A) and protein phosphatase type 2B (PP2B). Studies have reported that PP activity decreases during epididymal maturation, whereas protein kinase activity increases, which appears to be a requirement for motility acquisition. An interplay between these PPs has been extensively investigated; however, many specific interactions and some inconsistencies remain to be elucidated. The study of PPs significantly advanced following the identification of naturally occurring toxins, including calyculin A, okadaic acid, cyclosporin, endothall and deltamethrin, which are powerful and specific PP inhibitors. This review aims to overview the protein phosphorylation-dependent biochemical pathways underlying sperm motility acquisition and hyperactivation, followed by a discussion of the PP inhibitors that allowed advances in the current knowledge of these pathways. Since male infertility cases still attain alarming numbers, additional research on the topic is required, particularly using other PP inhibitors.
- Published
- 2022
24. Protein Mimicry and the Design of Bioactive Cell-Penetrating Peptides: The Genesis of STOPSPERM Bioportides
- Author
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John, Howl, Joana Vieira, Silva, Margarida, Fardilha, and Sarah, Jones
- Subjects
Male ,Drug Delivery Systems ,Biomimetics ,Humans ,Proteins ,Amino Acid Sequence ,Cell-Penetrating Peptides - Abstract
The mature spermatozoon, a highly differentiated cell equipped for the sole purpose of fertilization, lacks the protein machinery required for conventional endocytotic mechanisms. Perhaps contrary to expectation, cell-penetrating peptides (CPPs) rapidly translocate across the unique sperm plasma membrane to accrete within distinct intracellular compartments. Confocal microscopy, employing red-fluorescent CPPs and bioportides, is a convenient platform to study this membrane translocation process. In the virtual absence of genetic expression, rapid physiological responses of human sperm are dependent upon protein-protein interactions that may be regulated by posttranslational modifications including phosphorylation. This chapter provides an outline of the design of bioactive CPPs, or bioportides, which include protein-mimetic sequences from the interaction domains of sperm proteins. Protocols are included which enable the biological assessment of the impact of bioportides upon the viability and motility of spermatozoa.
- Published
- 2021
25. Protein Mimicry and the Design of Bioactive Cell-Penetrating Peptides: The Genesis of STOPSPERM Bioportides
- Author
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Joana Silva, Margarida Fardilha, Sarah Jones, and John Howl
- Subjects
medicine.anatomical_structure ,Spermatozoon ,urogenital system ,Chemistry ,Cellular differentiation ,Cell ,medicine ,Motility ,Phosphorylation ,Sperm ,Intracellular ,Cell biology ,Sperm plasma membrane - Abstract
The mature spermatozoon, a highly differentiated cell equipped for the sole purpose of fertilization, lacks the protein machinery required for conventional endocytotic mechanisms. Perhaps contrary to expectation, cell-penetrating peptides (CPPs) rapidly translocate across the unique sperm plasma membrane to accrete within distinct intracellular compartments. Confocal microscopy, employing red-fluorescent CPPs and bioportides, is a convenient platform to study this membrane translocation process. In the virtual absence of genetic expression, rapid physiological responses of human sperm are dependent upon protein-protein interactions that may be regulated by posttranslational modifications including phosphorylation. This chapter provides an outline of the design of bioactive CPPs, or bioportides, which include protein-mimetic sequences from the interaction domains of sperm proteins. Protocols are included which enable the biological assessment of the impact of bioportides upon the viability and motility of spermatozoa.
- Published
- 2021
26. G-Protein Coupled Receptors in Human Sperm: An In Silico Approach to Identify Potential Modulatory Targets
- Author
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Margarida Fardilha, Pedro Oliveira Corda, and Joana Santiago
- Subjects
Male ,Proteomics ,Proteome ,Organic Chemistry ,Contraceptive Agents, Male ,Pharmaceutical Science ,Receptors, Cell Surface ,Cadherins ,Spermatozoa ,Receptors, G-Protein-Coupled ,Analytical Chemistry ,Mice ,Semen ,Chemistry (miscellaneous) ,Drug Discovery ,Sperm Motility ,Animals ,Humans ,Molecular Medicine ,Physical and Theoretical Chemistry ,Infertility, Male - Abstract
G protein-coupled receptors (GPCRs) are involved in several physiological processes, and they represent the largest family of drug targets to date. However, the presence and function of these receptors are poorly described in human spermatozoa. Here, we aimed to identify and characterize the GPCRs present in human spermatozoa and perform an in silico analysis to understand their potential role in sperm functions. The human sperm proteome, including proteomic studies in which the criteria used for protein identification was set as
- Published
- 2022
27. PP1 catalytic isoforms are differentially expressed and regulated in human prostate cancer
- Author
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Juliana Felgueiras, João Lobo, Vânia Camilo, Isa Carneiro, Bárbara Matos, Rui Henrique, Carmen Jerónimo, and Margarida Fardilha
- Subjects
Cell Nucleus ,Male ,Carcinogenesis ,Protein Phosphatase 1 ,Humans ,Prostatic Neoplasms ,Protein Isoforms ,Cell Biology ,Phosphorylation - Abstract
The Ser/Thr-protein phosphatase PP1 (PP1) is a positive regulator of the androgen receptor (AR), which suggests major roles for PP1 in prostate carcinogenesis. However, studies dedicated to the characterization of PP1 in PCa are currently scarce. Here we analyzed the expression and localization of the PP1 catalytic (PP1c) isoforms in formalin-fixed, paraffin-embedded prostate tissue samples, as well as in PCa cell lines. We also analyzed well-characterized PCa cohorts to determine their transcript levels, identify genetic alterations, and assess promoter methylation of PP1c-coding genes. We found that PP-1A was upregulated and relocalized towards the nucleus in PCa and that PPP1CA was frequently amplified in PCa, particularly in advanced stages. PP-1B was downregulated in PCa but upregulated in a subset of tumors with AR amplification. PP-1G transcript levels were found to be associated with Gleason score. PP1c-coding genes were rarely mutated in PCa and were not prone to regulation by promoter methylation. Protein phosphorylation, on the other hand, might be an important regulatory mechanism of PP1c isoforms' activity. Altogether, our results suggest differential expression, localization, and regulation of PP1c isoforms in PCa and support the need for investigating isoform-specific roles in prostate carcinogenesis in future studies.
- Published
- 2022
28. Immunomodulatory effect of human bone marrow‐derived mesenchymal stromal/stem cells on peripheral blood T cells from rheumatoid arthritis patients
- Author
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Artur Paiva, Paula Laranjeira, Francisco dos Santos, Brígida Antunes, António Martinho, Tânia Ribeiro, Joana Gomes, Susana Pedreiro, Margarida Fardilha, M. Rosário M. Domingues, Monia Pedrosa, José António Pereira da Silva, Manuel Abecasis, and Cátia Duarte
- Subjects
Adult ,CD4-Positive T-Lymphocytes ,Male ,Stromal cell ,T-Lymphocytes ,medicine.medical_treatment ,T cell ,0206 medical engineering ,Biomedical Engineering ,Medicine (miscellaneous) ,Bone Marrow Cells ,02 engineering and technology ,CD8-Positive T-Lymphocytes ,Immunophenotyping ,Arthritis, Rheumatoid ,Immunomodulation ,Biomaterials ,03 medical and health sciences ,Antigen ,Bone Marrow ,medicine ,Humans ,Cytotoxic T cell ,Aged ,Cell Proliferation ,030304 developmental biology ,Immunosuppression Therapy ,0303 health sciences ,Chemistry ,Mesenchymal Stem Cells ,Middle Aged ,020601 biomedical engineering ,Cytokine ,medicine.anatomical_structure ,Cancer research ,Cytokines ,Female ,Tumor necrosis factor alpha ,Stem cell ,Immunosuppressive Agents ,CD8 - Abstract
Rheumatoid arthritis (RA) is a Th1/Th17-mediated autoimmune disease whose current treatment, consisting in the blockage of inflammatory cytokines by disease-modifying antirheumatic drugs, is not effective for all patients. The therapeutic potential of mesenchymal stromal/stem cells' (MSCs) immunomodulatory properties is being explored in RA. Here, we investigate the effect of human bone marrow (BM)-MSCs on the expression of cytokines involved in RA physiopathology by the distinct functional compartments of CD4+ and CD8+ T cells from RA patients. Peripheral blood mononuclear cells from healthy individuals (n = 6) and RA patients (n = 12) were stimulated with phorbol myristate acetate plus ionomycin and cultured in the presence/absence of BM-MSCs. The expression of (interleukin) IL-2, tumor necrosis factor alpha (TNF-α), and interferon-gamma (IFN-γ) was evaluated in naive, central memory, effector memory, and effector CD4+ and CD8+ T cells, whereas IL-6, IL-9, and IL-17 expression was measured in total CD4+ and CD8+ T cells. mRNA expression of IL-4, IL-10, transforming growth factor beta (TGF-β), cytotoxic T-lymphocyte-associated antigen 4, and/or forkhead box P3 was quantified in fluorescence-activated cell sorting-purified CD4+ T cells, CD8+ T cells, and CD4+ Treg. BM-MSCs inhibited the production of TNF-α, IL-17, IL-6, IL-2, IFN-γ, and IL-9 by T cells from RA patients, mainly by reducing the percentage of cells producing cytokines. This inhibitory effect was transversal to all T cell subsets analyzed. At mRNA level, BM-MSCs increased expression of IL-10 and TGF-β by CD4+ and CD8+ T cells. BM-MSCs displayed a striking inhibitory action over T cells from RA patients, reducing the expression of cytokines involved in RA physiopathology. Remarkably, BM-MSC-derived immunomodulation affected either naive, effector, and memory T cells.
- Published
- 2019
29. Exposure to mercury and human reproductive health: A systematic review
- Author
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Margarida Fardilha, Susana Loureiro, Magda Carvalho Henriques, and Maria Teresa Herdeiro
- Subjects
Male ,Infertility ,Epidemiology ,media_common.quotation_subject ,Physiology ,chemistry.chemical_element ,Fertility ,010501 environmental sciences ,Toxicology ,01 natural sciences ,Abnormal sperm morphology ,03 medical and health sciences ,Human reproduction ,Human fertility ,Ovarian Follicle ,Humans ,Medicine ,030304 developmental biology ,0105 earth and related environmental sciences ,Unexplained infertility ,media_common ,0303 health sciences ,Reproductive function ,business.industry ,Reproduction ,Mercury ,Mercury exposure ,medicine.disease ,Spermatozoa ,3. Good health ,Mercury (element) ,Reproductive Health ,Systematic review ,chemistry ,Environmental Pollutants ,Female ,business - Abstract
Background Evidences from human and animal studies suggest that reproductive function may be affected by mercury. The aim of this review was to explore the mercury influence on human fertility. Methods A systematic search was made in PubMED for papers published between 1975–2017, according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. Results Increased mercury levels were associated with infertility or subfertility status. Further, infertile subjects with unexplained infertility showed higher levels of mercury in hair, blood and urine than fertile ones. Mercury exposure induced sperm DNA damage and abnormal sperm morphology and motility. Additionally, mercury levels were related with higher incidence of menstrual and hormonal disorders and increased rates of adverse reproductive outcomes. Conclusions Our review showed that mercury negatively impacts human reproduction, affecting the reproductive and endocrine systems in both male and female. However, the molecular mechanisms underlying the mercury-associated decline on fertility remains unknown.
- Published
- 2019
30. Modulation of serine/threonine-protein phosphatase 1 (PP1) complexes: A promising approach in cancer treatment
- Author
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Carmen Jerónimo, Bárbara Matos, Margarida Fardilha, and John Howl
- Subjects
Pharmacology ,Drug ,business.industry ,media_common.quotation_subject ,Phosphatase ,Cancer ,Protein phosphatase 1 ,medicine.disease ,Small molecule ,In vitro ,Serine ,Multiprotein Complexes ,Neoplasms ,Protein Phosphatase 1 ,Drug Discovery ,medicine ,Cancer research ,Humans ,Threonine ,business ,media_common - Abstract
Cancer is the second leading cause of death worldwide. Despite the availability of numerous therapeutic options, tumor heterogeneity and chemoresistance have limited the success of these treatments, and the development of effective anticancer therapies remains a major focus in oncology research. The serine/threonine-protein phosphatase 1 (PP1) and its complexes have been recognized as potential drug targets. Research on the modulation of PP1 complexes is currently at an early stage, but has immense potential. Chemically diverse compounds have been developed to disrupt or stabilize different PP1 complexes in various cancer types, with the objective of inhibiting disease progression. Beneficial results obtained in vitro now require further pre-clinical and clinical validation. In conclusion, the modulation of PP1 complexes seems to be a promising, albeit challenging, therapeutic strategy for cancer.
- Published
- 2021
31. Bioinformatic analysis of dysregulated proteins in prostate cancer patients reveals putative urinary biomarkers and key biological pathways
- Author
-
Rui Vitorino, Rui Henrique, Tânia Lima, and Margarida Fardilha
- Subjects
Cancer Research ,Bladder cancer ,business.industry ,Cancer ,Hematology ,General Medicine ,Computational biology ,urologic and male genital diseases ,medicine.disease ,Proteomics ,03 medical and health sciences ,Prostate cancer ,0302 clinical medicine ,medicine.anatomical_structure ,Oncology ,Prostate ,030220 oncology & carcinogenesis ,Proteome ,Medicine ,Biomarker (medicine) ,MSMB ,business - Abstract
Prostate cancer (PCa) is one of the most common cancer types among men. The quantification of prostate-specific antigen used for PCa detection has revealed limited applicability. Thus, it is crucial to identify new minimally invasive biomarkers for PCa. It is believed that the integration of proteomics data from different studies is vital for identifying new biomarkers for PCa, but studies carried out in this regard have few converging results. Using a different approach, this study aimed to unveil molecular features consistently dysregulated in PCa and potential urinary biomarkers for PCa. The novelty of this analysis relies on the comparison of urinary and tissue proteomes from PCa patients and consequent exclusion of kidney and bladder cancer interference. The conducted bioinformatic analysis revealed molecular processes dysregulated in urine from PCa patients that mirror the alterations in prostate tumor tissue. To identify putative urinary biomarkers, proteins previously detected in kidney and bladder tissues were eliminated from the final list of potential urinary biomarkers for PCa. After a detailed analysis, MSMB, KLK3, ITIH4, ITIH2, HPX, GP2, APOA2 and AZU1 proteins stood out as candidate urinary biomarkers for PCa.
- Published
- 2021
32. PP1 Catalytic Isoforms are Differentially Expressed and Regulated in Human Prostate Cancer
- Author
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Juliana Felgueiras, João Lobo, Vânia Camilo, Isa Carneiro, Rui Henrique, Carmen Jeronimo, and Margarida Fardilha
- Subjects
History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2021
33. The Impact of Lifestyle on Prostate Cancer: A Road to the Discovery of New Biomarkers
- Author
-
Catarina Leitão, Bárbara Matos, Maria Teresa Herdeiro, Fátima Roque, and Margarida Fardilha
- Subjects
inflammation ,lifestyle patterns ,biomarkers ,General Medicine ,prostate cancer - Abstract
Prostate cancer (PCa) is one of the most common cancers among men, and its incidence has been rising through the years. Several risk factors have been associated with this disease and unhealthy lifestyles and inflammation were appointed as major contributors for PCa development, progression, and severity. Despite the advantages associated with the currently used diagnostic tools [prostate-specific antigen(PSA) serum levels and digital rectal examination (DRE)], the development of effective approaches for PCa diagnosis is still necessary. Finding lifestyle-associated proteins that may predict the development of PCa seems to be a promising strategy to improve PCa diagnosis. In this context, several biomarkers have been identified, including circulating biomarkers (CRP, insulin, C-peptide, TNFα-R2, adiponectin, IL-6, total PSA, free PSA, and p2PSA), urine biomarkers (PCA3, guanidine, phenylacetylglycine, and glycine), proteins expressed in exosomes (afamin, vitamin D-binding protein, and filamin A), and miRNAs expressed in prostate tissue (miRNA-21, miRNA-101, and miRNA-182). In conclusion, exploring the impact of lifestyle and inflammation on PCa development and progression may open doors to the identification of new biomarkers. The discovery of new PCa diagnostic biomarkers should contribute to reduce overdiagnosis and overtreatment.
- Published
- 2022
34. Application of Proteogenomics to Urine Analysis towards the Identification of Novel Biomarkers of Prostate Cancer: An Exploratory Study
- Author
-
Tânia Lima, António S. Barros, Fábio Trindade, Rita Ferreira, Adelino Leite-Moreira, Daniela Barros-Silva, Carmen Jerónimo, Luís Araújo, Rui Henrique, Rui Vitorino, and Margarida Fardilha
- Subjects
Cancer Research ,Oncology ,prostate cancer ,urine ,human ,biomarker ,proteome ,proteogenome ,label-free quantitation ,immunoblot ,urologic and male genital diseases - Abstract
To identify new protein targets for PCa detection, first, a shotgun discovery experiment was performed to characterize the urinary proteome of PCa patients. This revealed 18 differentially abundant urinary proteins in PCa patients. Second, selected targets were clinically tested by immunoblot, and the soluble E-cadherin fragment was detected for the first time in the urine of PCa patients. Third, the proteogenome landscape of these PCa patients was characterized, revealing 1665 mutant protein isoforms. Statistical analysis revealed 6 differentially abundant mutant protein isoforms in PCa patients. Analysis of the likely effects of mutations on protein function and PPIs involving the dysregulated mutant protein isoforms suggests a protective role of mutations HSPG2*Q1062H and VASN*R161Q and an adverse role of AMBP*A286G and CD55*S162L in PCa patients. This work originally characterized the urinary proteome, focusing on the proteogenome profile of PCa patients, which is usually overlooked in the analysis of PCa and body fluids. Combined analysis of mass spectrometry data using two different software packages was performed for the first time in the context of PCa, which increased the robustness of the data analysis. The application of proteogenomics to urine proteomic analysis can be very enriching in mutation-related diseases such as cancer.
- Published
- 2022
35. New evidences of ubiquitin-proteasome system activity in human sperm
- Author
-
Mário Sousa, Alberto Barros, Joana Silva, Joana Santiago, Margarida Fardilha, and Pedro Fontes Oliveira
- Subjects
Adult ,Male ,Proteasome Endopeptidase Complex ,Adolescent ,Chemistry ,Leupeptins ,Ubiquitin ,Cell Biology ,Middle Aged ,Sperm ,Spermatozoa ,Cell biology ,Protein Aggregates ,Young Adult ,Proteasome ,Humans ,Molecular Biology - Published
- 2020
36. Bioinformatic analysis of dysregulated proteins in prostate cancer patients reveals putative urinary biomarkers and key biological pathways
- Author
-
Tânia, Lima, Rui, Henrique, Rui, Vitorino, and Margarida, Fardilha
- Subjects
Male ,Gene Ontology ,Databases, Factual ,Proteome ,Biomarkers, Tumor ,Prostate ,Computational Biology ,Gene Expression ,Humans ,Prostatic Neoplasms ,Protein Interaction Maps - Abstract
Prostate cancer (PCa) is one of the most common cancer types among men. The quantification of prostate-specific antigen used for PCa detection has revealed limited applicability. Thus, it is crucial to identify new minimally invasive biomarkers for PCa. It is believed that the integration of proteomics data from different studies is vital for identifying new biomarkers for PCa, but studies carried out in this regard have few converging results. Using a different approach, this study aimed to unveil molecular features consistently dysregulated in PCa and potential urinary biomarkers for PCa. The novelty of this analysis relies on the comparison of urinary and tissue proteomes from PCa patients and consequent exclusion of kidney and bladder cancer interference. The conducted bioinformatic analysis revealed molecular processes dysregulated in urine from PCa patients that mirror the alterations in prostate tumor tissue. To identify putative urinary biomarkers, proteins previously detected in kidney and bladder tissues were eliminated from the final list of potential urinary biomarkers for PCa. After a detailed analysis, MSMB, KLK3, ITIH4, ITIH2, HPX, GP2, APOA2 and AZU1 proteins stood out as candidate urinary biomarkers for PCa.
- Published
- 2020
37. The disruption of protein-protein interactions as a therapeutic strategy for prostate cancer
- Author
-
Carmen Jerónimo, Bárbara Matos, John Howl, and Margarida Fardilha
- Subjects
0301 basic medicine ,Male ,Protein-protein interactions ,medicine.medical_treatment ,Antineoplastic Agents ,Drug resistance ,Disease ,Bioinformatics ,03 medical and health sciences ,Therapeutic approach ,Prostate cancer ,0302 clinical medicine ,Antineoplastic Combined Chemotherapy Protocols ,Medicine ,Animals ,Humans ,Molecular Targeted Therapy ,Protein Interaction Maps ,Pharmacology ,business.industry ,Small molecules ,Cancer ,Prostatic Neoplasms ,medicine.disease ,Neoplasm Proteins ,Clinical trial ,Radiation therapy ,Treatment ,030104 developmental biology ,Drug Resistance, Neoplasm ,030220 oncology & carcinogenesis ,Drug Design ,Hormonal therapy ,Disruption ,business ,Peptides ,Signal Transduction - Abstract
Prostate cancer (PCa) is one of the most common male-specific cancers worldwide, with high morbidity and mortality rates associated with advanced disease stages. The current treatment options of PCa are prostatectomy, hormonal therapy, chemotherapy or radiotherapy, the selection of which is usually dependent upon the stage of the disease. The development of PCa to a castration-resistant phenotype (CRPC) is associated with a more severe prognosis requiring the development of a new and effective therapy. Protein-protein interactions (PPIs) have been recognised as an emerging drug modality and targeting PPIs is a promising therapeutic approach for several diseases, including cancer. The efficacy of several compounds in which target PPIs and consequently impair disease progression were validated in phase I/II clinical trials for different types of cancer. In PCa, various small molecules and peptides proved successful in inhibiting important PPIs, mainly associated with the androgen receptor (AR), Bcl-2 family proteins, and kinases/phosphatases, thus impairing the growth of PCa cells in vitro. Moreover, a majority of these compounds require further validation in vivo and, preferably, in clinical trials. In addition, several other PPIs associated with PCa progression have been identified and now require experimental validation as potential therapeutic loci. In conclusion, we consider the disruption of PPIs to be a promising though challenging therapeutic strategy for PCa. Agents which modulate PPIs might be employed as a monotherapy or as an adjunct to classical chemotherapeutics to overcome drug resistance and improve efficacy. The discovery of new PPIs with important roles in disease progression, and of novel optimized strategies to target them are major challenges for the scientific and pharmacological communities. published
- Published
- 2020
38. Protein phosphatase 1 in tumorigenesis: is it worth a closer look?
- Author
-
Carmen Jerónimo, Juliana Felgueiras, and Margarida Fardilha
- Subjects
0301 basic medicine ,Cancer Research ,Cell signaling ,Carcinogenesis ,Phosphatase ,Biology ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,Protein Phosphatase 1 ,Genetics ,medicine ,Humans ,Protein phosphorylation ,Phosphorylation ,Kinase ,Cancer ,Protein phosphatase 1 ,medicine.disease ,Cell biology ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Cancer cell ,Mutation ,Signal Transduction - Abstract
Cancer cells take advantage of signaling cascades to meet their requirements for sustained growth and survival. Cell signaling is tightly controlled by reversible protein phosphorylation mechanisms, which require the counterbalanced action of protein kinases and protein phosphatases. Imbalances on this system are associated with cancer development and progression. Protein phosphatase 1 (PP1) is one of the most relevant protein phosphatases in eukaryotic cells. Despite the widely recognized involvement of PP1 in key biological processes, both in health and disease, its relevance in cancer has been largely neglected. Here, we provide compelling evidence that support major roles for PP1 in tumorigenesis.
- Published
- 2020
39. More Than Androgens: Hormonal and Paracrine Signaling in Prostate Development and Homeostasis
- Author
-
Margarida Fardilha, Carmen Jerónimo, Juliana Felgueiras, and Vânia Camilo
- Subjects
Paracrine signalling ,Cell signaling ,medicine.anatomical_structure ,Prostate ,medicine ,Human embryogenesis ,Cell fate determination ,Biology ,Autocrine signalling ,Homeostasis ,Hormone ,Cell biology - Abstract
The prostate is the major exocrine gland of the male reproductive system. The prostatic epithelium secretes an alkaline fluid, the prostatic fluid, that constitutes about 20–30% volume of the seminal fluid. It provides proteins and ions essential to control the ejaculation process and to regulate proteins involved in sperm maturation (e.g. human kallikrein-related peptidases, phosphatases, polyamines, pepsinogen II, citrate, glucose, and Zn2+, among others). The prostate exhibits some particularities when compared to other organs: it accumulates the highest levels of Zn2+ of any soft tissue; epithelial cells can produce energy by glycolysis (similarly to highly proliferative cells); and, it is the only gland that tends to grow with aging, being associated with disorders of elderly, such as benign prostatic hyperplasia and carcinoma. Prostate development starts early in embryogenesis, but prostate maturation is only concluded in puberty. Specification of the prostate during human embryogenesis occurs before clear morphological evidence of a developing structure and involves the expression of signaling molecules that drive cells from the urogenital sinus to a prostatic cell fate. Prostate development and homeostasis are regulated by several hormones and growth factors and are highly dependent on autocrine and paracrine signaling. Efforts have been made to identify the mediators of prostate signaling as revised in this chapter, however this has been compromised by experimental constrains. Furthermore, most of the studies has been performed in rodent models, which makes extrapolations to other species difficult, given the inter-species variability on prostate anatomy and morphology.
- Published
- 2020
40. Sperm Signaling Specificity: From Sperm Maturation to Oocyte Recognition
- Author
-
Maria João Freitas, Daniela Patrício, and Margarida Fardilha
- Subjects
endocrine system ,urogenital system ,Cell ,Acrosome reaction ,Motility ,Biology ,Epididymis ,Oocyte ,Sperm ,Cell biology ,medicine.anatomical_structure ,medicine ,Signal transduction ,reproductive and urinary physiology ,Sperm motility - Abstract
The sperm cell is unique in its function. It is the only human cell that must leave the body where it is produced and fulfills its goal in a different organism being, thus, a highly specialized cell. Sperm cells are produced in the testis, acquire motility during the epididymis journey and fertilize the oocyte in the female reproductive system. Moreover, since these cells are virtually transcriptionally silent, they rely exclusively on protein-protein interactions and post translational modifications to control signaling pathways. These sperm cell unique features are reflected in sperm-specific signaling. Several sperm-specific/enriched proteins are responsible for controlling sperm functions such as sperm motility and acrosome reaction. In this chapter, we describe the signaling events that characterize sperm motility and acrosome reaction as well as the unique proteins that control such events.
- Published
- 2020
41. Human Bone Marrow Mesenchymal Stromal/Stem Cells Regulate the Proinflammatory Response of Monocytes and Myeloid Dendritic Cells from Patients with Rheumatoid Arthritis
- Author
-
Paula Laranjeira, Mónia Pedrosa, Cátia Duarte, Susana Pedreiro, Brígida Antunes, Tânia Ribeiro, Francisco dos Santos, António Martinho, Margarida Fardilha, M. Rosário Domingues, Manuel Abecasis, José António Pereira da Silva, and Artur Paiva
- Subjects
Pharmaceutical Science ,mesenchymal stromal cells ,mesenchymal stem cells ,immunomodulation ,rheumatoid arthritis ,dendritic cells ,monocytes ,cytokines ,chemokines - Abstract
Rheumatoid arthritis (RA) is a disabling autoimmune disease whose treatment is ineffective for one-third of patients. Thus, the immunomodulatory potential of mesenchymal stromal/stem cells (MSCs) makes MSC-based therapy a promising approach to RA. This study aimed to explore the immunomodulatory action of human bone marrow (BM)-MSCs on myeloid dendritic cells (mDCs) and monocytes, especially on cytokines/chemokines involved in RA physiopathology. For that, LPS plus IFNγ-stimulated peripheral blood mononuclear cells from RA patients (n = 12) and healthy individuals (n = 6) were co-cultured with allogeneic BM-MSCs. TNF-α, CD83, CCR7 and MIP-1β protein levels were assessed in mDCs, classical, intermediate, and non-classical monocytes. mRNA expression of other cytokines/chemokines was also evaluated. BM-MSCs effectively reduced TNF-α, CD83, CCR7 and MIP-1β protein levels in mDCs and all monocyte subsets, in RA patients. The inhibition of TNF-α production was mainly achieved by the reduction of the percentage of cellsproducing this cytokine. BM-MSCs exhibited a remarkable suppressive action over antigen-presenting cells from RA patients, potentially affecting their ability to stimulate the immune adaptive response at different levels, by hampering their migration to the lymph node and the production of proinflammatory cytokines and chemokines. Accordingly, MSC-based therapies can be a valuable approach for RA treatment, especially for non-responder patients.
- Published
- 2022
42. The deletion of the protein phosphatase 1 regulator NIPP1 in testis causes hyperphosphorylation and degradation of the histone methyltransferase EZH2
- Author
-
Iris Verbinnen, Mónica Ferreira, Margarida Fardilha, Aleyde Van Eynde, and Mathieu Bollen
- Subjects
Male ,0301 basic medicine ,germ cells ,Biochemistry ,Histones ,Mice ,Protein Phosphatase 1 ,Testis ,Histone methylation ,Polycomb group ,Phosphorylation ,Mice, Knockout ,phosphoprotein phosphatase 1 (PP1) ,biology ,Chemistry ,EZH2 ,Intracellular Signaling Peptides and Proteins ,Polycomb Repressive Complex 2 ,Cell biology ,Histone ,protein stability ,Histone methyltransferase ,cell cycle ,PRC2 ,proteolysis ,macromolecular substances ,testis ,Methylation ,03 medical and health sciences ,Histone H3 ,Germ cell proliferation ,protein phosphatase 1 ,Animals ,Enhancer of Zeste Homolog 2 Protein ,histone methylation ,Epigenetics ,Spermatogenesis ,Molecular Biology ,epigenetics ,Cell Biology ,spermatogenesis ,protein phosphorylation ,030104 developmental biology ,Accelerated Communications ,Proteolysis ,NIPP1 ,biology.protein ,chromatin ,Gene Deletion - Abstract
Germ cell proliferation is epigenetically controlled, mainly through DNA methylation and histone modifications. However, the pivotal epigenetic regulators of germ cell self-renewal and differentiation in postnatal testis are still poorly defined. The histone methyltransferase enhancer of zeste homolog 2 (EZH2) is the catalytic subunit of Polycomb repressive complex 2, represses target genes through trimethylation of histone H3 at Lys-27 (H3K27me3), and interacts (in)directly with both protein phosphatase 1 (PP1) and nuclear inhibitor of PP1 (NIPP1). Here, we report that postnatal, testis-specific ablation of NIPP1 in mice results in loss of EZH2 and reduces H3K27me3 levels. Mechanistically, the NIPP1 deletion abrogated PP1-mediated EZH2 dephosphorylation at two cyclin-dependent kinase sites (Thr-345/487), thereby generating hyperphosphorylated EZH2, which is a substrate for proteolytic degradation. Accordingly, alanine mutation of these residues prolonged the half-life of EZH2 in male germ cells. Our study discloses a key role for the PP1:NIPP1 holoenzyme in stabilizing EZH2 and maintaining the H3K27me3 mark on genes that are important for germ cell development and spermatogenesis. ispartof: JOURNAL OF BIOLOGICAL CHEMISTRY vol:293 issue:47 pages:18031-18039 ispartof: location:United States status: published
- Published
- 2018
43. Photodynamic therapy of prostate cancer using porphyrinic formulations
- Author
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Mariana Q. Mesquita, Daniela Ribeiro, Maria da Graça P. M. S. Neves, Margarida Fardilha, Ana Rita Ferreira, and Maria A. F. Faustino
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Male ,Programmed cell death ,Porphyrins ,Drug Compounding ,medicine.medical_treatment ,Biophysics ,Down-Regulation ,Apoptosis ,Photodynamic therapy ,macromolecular substances ,Prostate cancer ,Cell Line, Tumor ,Chlorin ,medicine ,Humans ,Bcl-2 ,Radiology, Nuclear Medicine and imaging ,Cytotoxicity ,chemistry.chemical_classification ,Reactive oxygen species ,Photosensitizing Agents ,Radiation ,Radiological and Ultrasound Technology ,Caspase 3 ,Chemistry ,technology, industry, and agriculture ,Povidone ,Prostatic Neoplasms ,Cancer ,Polyvinylpyrrolidone ,medicine.disease ,Mitochondria ,Cell killing ,Photochemotherapy ,Proto-Oncogene Proteins c-bcl-2 ,Cancer research ,Nanoparticles ,Reactive Oxygen Species - Abstract
Prostate cancer (PCa) is the second most frequent cancer diagnosed in men worldwide. Among the common treatment options, photodynamic therapy (PDT) is being considered a promising local therapy to treat this cancer. Although PDT is an established treatment modality approved for several types of cancer, the low solubility, the reduced tumor selectivity, the absorption in the therapeutic window and the poor clearance from the body of the currently approved photosensitizers (PS) hampers its wide clinical application. In this regard, herein we synthesized three fluorinated porphyrinoid derivatives and entrapped them into polyvinylpyrrolidone (PVP) to prevent their aggregation and preserve their desirable photophysical properties under the physiological environment. In vitro studies revealed the negligible dark cytotoxicity of all PVP formulations (PS1@PVP, PS2@PVP and PS3@PVP) at the tested concentrations (5.0 to 20 μM), but also confirmed the significant photodynamic effect of PS2@PVP and PS3@PVP towards the PCa cell line PC-3, upon red light irradiation at an irradiance of 17.6 mW.cm−2. To provide insight into the underlying mechanisms of cell death under PDT treatment induced by PS2@PVP and PS3@PVP, their intracellular localization in PC-3 cells was firstly investigated by confocal microscopy. Since both PS2@PVP and PS3@PVP nanoparticles were mainly localized in mitochondria, the involvement of this organelle in PDT-induced apoptosis mediated by both formulations was further explored. Western blot analysis revealed that PDT treatment of PC-3 cells with either PS2@PVP or PS3@PVP resulted in the reduction of the expression level of the anti-apoptotic protein Bcl-2. As the photodamage to Bcl-2 after PDT with PS2@PVP and PS3@PVP was accompanied by the further activation of pro-caspase-3, we assumed that upon irradiation the photogenerated reactive oxygen species (ROS) were able to activate a caspase-dependent apoptotic response as a consequence of a post-mitochondrial event. Taken together, these findings demonstrate that among the tested fluorinated porphyrinoids, PS2@PVP and, particularly, PS3@PVP, are significantly more effective in overall PC-3 cell killing than PS1@PVP, thus highlighting their great potential as therapeutic agents for PCa.
- Published
- 2021
44. Novel Indole-based Tambjamine-Analogues Induce Apoptotic Lung Cancer Cell Death through p38 Mitogen-Activated Protein Kinase Activation
- Author
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Ananda M. Rodilla, Alberto Villanueva, Margarida Fardilha, Pilar Manuel-Manresa, J. Moya, Elsa Hernando, Roberto Quesada, Luís Korrodi-Gregório, David Martínez-García, Ricard Ramos, Vanessa Soto-Cerrato, and Ricardo Pérez-Tomás
- Subjects
0301 basic medicine ,Cancer Research ,Programmed cell death ,Indoles ,Lung Neoplasms ,Apoptosis Inhibitor ,Survivin ,p38 mitogen-activated protein kinases ,Chemistry, Organic ,Apoptosis ,Biology ,p38 Mitogen-Activated Protein Kinases ,Inhibitor of Apoptosis Proteins ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Line, Tumor ,Genetics ,medicine ,Animals ,Humans ,Pyrroles ,Kinase ,Cell Cycle ,Química orgánica ,Apoptosi ,Cell cycle ,Xenograft Model Antitumor Assays ,Pirroles ,Cell biology ,Enzyme Activation ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Proto-Oncogene Proteins c-bcl-2 ,Oncology ,Mechanism of action ,chemistry ,Efectes secundaris dels medicaments ,Càncer de pulmó ,Drug side effects ,Tambjamine ,Lung cancer ,medicine.symptom ,Genètica - Abstract
Lung cancer has become the leading killer cancer worldwide, due to late diagnosis and lack of efficient anticancer drugs. We have recently described novel natural-derived tambjamine analogues that are potent anion transporters capable of disrupting cellular ion balance, inducing acidification of the cytosol and hyperpolarization of cellular plasma membranes. Although these tambjamine analogues were able to compromise cell survival, their molecular mechanism of action remains largely unknown. Herein we characterize the molecular cell responses induced by highly active indole-based tambjamine analogues treatment in lung cancer cells. Expression changes produced after compounds treatment comprised genes related to apoptosis, cell cycle, growth factors and its receptors, protein kinases and topoisomerases, among others. Dysregulation of BCL2 and BIRC5/survivin genes suggested the apoptotic pathway as the induced molecular cell death mechanism. In fact, activation of several proapoptotic markers (caspase-9, caspase-3, and PARP) and reversion of the cytotoxic effect upon treatment with an apoptosis inhibitor (Z-VAD-FMK) were observed. Moreover, members of the Bcl-2 protein family suffered changes after tambjamine analogues treatment, with a concomitant protein decrease towards the prosurvival members. Besides this, it was observed cellular accumulation of ROS upon compound treatment and an activation of the stress-kinase p38 MAPK route that, when inhibited, reverted the cytotoxic effect of the tambjamine analogues. Finally, a significant therapeutic effect of these compounds was observed in subcutaneous and orthotopic lung cancer mice models. Taken together, these results shed light on the mechanism of action of novel cytotoxic anionophores and demonstrate the therapeutic effects against lung cancer., Spanish Government and EU funds through the Fondo de Investigaciones Sanitarias (FIS, project PI13/ 00089) and from La Marat o de TV3 Foundation (project 20132730) to R. P erez-Tom as. R. Ramos was supported by the Sociedad Espa~nola de Neumología y Cirugía Tor acica (SEPAR, Project 017/2013), R. Quesada by the Consejería de Educación de la Junta de Castilla y León (project BU340U13) and by the La Marat o de TV3 Foundation (project 20132732) and A. Villanueva by the FIS (project PI13/01339).
- Published
- 2017
45. Construction and analysis of a human testis/sperm-enriched interaction network: Unraveling the PPP1CC2 interactome
- Author
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Kris Gevaert, Joana Silva, S. Y. Yoon, Alexander V. Goltsev, Margarida Fardilha, José F. F. Mendes, and Pieter-Jan De Bock
- Subjects
Male ,0301 basic medicine ,endocrine system ,Protein subunit ,Biophysics ,A Kinase Anchor Proteins ,Context (language use) ,Biology ,Biochemistry ,Interactome ,Male infertility ,03 medical and health sciences ,Interaction network ,Testis ,medicine ,Humans ,Protein Interaction Maps ,Spermatogenesis ,Molecular Biology ,Sperm motility ,Nuclear Proteins ,RNA-Binding Proteins ,Protein phosphatase 1 ,Janus Kinase 2 ,Lamin Type A ,medicine.disease ,Spermatozoa ,Phenotype ,Cell biology ,DNA-Binding Proteins ,030104 developmental biology ,Infertility ,Receptor-Interacting Protein Serine-Threonine Kinases ,Sperm Motility - Abstract
Background Phosphoprotein phosphatase 1 catalytic subunit gamma 2 (PPP1CC2), a PPP1CC tissue-specific alternative splice restricted to testicular germ cells and spermatozoa, is essential for spermatogenesis and spermatozoa motility. The key to understand PPP1CC2 regulation lies on the characterization of its interacting partners. Methods We construct a testis/sperm-enriched protein interaction network and analyzed the topological properties and biological context of the network. Further the interaction of a potential target for pharmacological intervention was validated in human spermatozoa. Results A total of 1778 proteins and 32,187 interactions between them were identified in the testis/sperm-enriched network. The network analysis revealed the members of functional modules that interact more tightly with each other. In the network, PPP1CC was located in the fourth maximum core part (k = 41) and had 106 direct interactors. Sixteen PPP1CC interactors were involved in spermatogenesis-related categories. Also, PPP1CC had 50 direct interactors, highly interconnected and many of them part of the network maximum core (k = 44), associated with motility-related annotations, including several previously uncharacterized interactors, such as, LMNA, JAK2 and RIPK3. Conclusions In this study we integrated tissue-specific protein expression and protein-protein interaction data in order to identify key PPP1CC2 complexes for male reproductive functions. One of the most intriguing interactors was A-kinase anchor protein 4 (AKAP4), a testis-specific protein related to infertility phenotypes and involved in all major motility-related annotations. General significance We demonstrated for the first time the interaction between PPP1CC2 and AKAP4 in human spermatozoa and the potential of the complex as contraceptive target.
- Published
- 2017
46. High-intensity, high-volume exercise in addition to school exercise classes reduces endothelial progenitor cells, inflammation and catabolism in adolescent boys
- Author
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Raquel Fernandes, Magda Carvalho Henriques, Ilda Patrícia Ribeiro, Ana Cristina Gonçalves, Fernando Ribeiro, Rita Ferreira, Margarida Fardilha, and Rui Santos
- Subjects
Male ,medicine.medical_specialty ,Adolescent ,Epidemiology ,Inflammation ,Vascular health ,Internal medicine ,medicine ,Humans ,Progenitor cell ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,Exercise ,Endothelial Progenitor Cells ,Schools ,Catabolism ,business.industry ,High intensity ,Endocrinology ,Metabolism ,Volume (thermodynamics) ,Body Composition ,medicine.symptom ,Cardiology and Cardiovascular Medicine ,business ,Biomarkers ,Sports - Abstract
Submitted by Margarida Fardilha (mfardilha@ua.pt) on 2020-10-01T09:38:01Z No. of bitstreams: 1 high_intensity_draft.pdf: 217813 bytes, checksum: ea51b7b07a25aeea7e9322eb6940ba98 (MD5) Approved for entry into archive by Rita Gonçalves (ritaisabel@ua.pt) on 2020-10-21T17:18:05Z (GMT) No. of bitstreams: 1 high_intensity_draft.pdf: 217813 bytes, checksum: ea51b7b07a25aeea7e9322eb6940ba98 (MD5) Made available in DSpace on 2020-10-21T17:18:05Z (GMT). No. of bitstreams: 1 high_intensity_draft.pdf: 217813 bytes, checksum: ea51b7b07a25aeea7e9322eb6940ba98 (MD5) Previous issue date: 2019-10-24 published
- Published
- 2019
47. Isoform-specific GSK3A activity is negatively correlated with human sperm motility
- Author
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Cameron Brothag, Srinivasan Vijayaraghavan, Joana Silva, B Regadas-Correia, Maria João Freitas, and Margarida Fardilha
- Subjects
0301 basic medicine ,Male ,Embryology ,Interactome ,Cell ,Gene Expression ,GSK3 ,Glycogen Synthase Kinase 3 ,Mice ,0302 clinical medicine ,Protein Interaction Mapping ,Testis ,Phosphorylation ,Sperm motility ,reproductive and urinary physiology ,030219 obstetrics & reproductive medicine ,Obstetrics and Gynecology ,Spermatozoa ,Isoenzymes ,medicine.anatomical_structure ,Asthenozoospermia ,Sperm Motility ,Original Article ,Protein Binding ,Gene isoform ,Adult ,endocrine system ,animal structures ,Motility ,Male contraceptive ,macromolecular substances ,Biology ,Andrology ,03 medical and health sciences ,Genetics ,medicine ,Animals ,Humans ,Spermatogenesis ,Molecular Biology ,urogenital system ,Gene Expression Profiling ,Cell Biology ,Sperm ,030104 developmental biology ,Fertility ,Reproductive Medicine ,Sperm biochemistry ,Cattle ,Protein Processing, Post-Translational ,Developmental Biology - Abstract
In mouse and bovine sperm, GSK3 activity is inversely proportional to motility. Targeted disruption of the GSK3A gene in testis results in normal spermatogenesis, but mature sperm present a reduced motility, rendering male mice infertile. On the other hand, GSK3B testis-specific KO is fertile. Yet in human sperm, an isoform-specific correlation between GSK3A and sperm motility was never established. In order to analyze GSK3 function in human sperm motility, normospermic and asthenozoospermic samples from adult males were used to correlate GSK3 expression and activity levels with human sperm motility profiles. Moreover, testicular and sperm GSK3 interactomes were identified using a yeast two-hybrid screen and coimmunoprecipitation, respectively. An extensive in-silico analysis of the GSK3 interactome was performed. The results proved that inhibited GSK3A (serine phosphorylated) presents a significant strong positive correlation (r = 0.822, P = 0.023) with the percentage of progressive human sperm, whereas inhibited GSK3B is not significantly correlated with sperm motility (r = 0.577, P = 0.175). The importance of GSK3 in human sperm motility was further reinforced by in-silico analysis of the GSK3 interactome, which revealed a high level of involvement of GSK3 interactors in sperm motility-related functions. The limitation of techniques used for GSK3 interactome identification can be a drawback, since none completely mimics the physiological environment. Our findings prove that human sperm motility relies on isoform-specific functions of GSK3A within this cell. Given the reported relevance of GSK3 protein-protein interactions in sperm motility, we hypothesized that they stand as potential targets for male contraceptive strategies based on sperm motility modulation. published
- Published
- 2018
48. Fighting Bisphenol A-Induced Male Infertility: The Power of Antioxidants
- Author
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Joana Silva, Joana Santiago, Margarida Fardilha, Manuel A. S. Santos, and Instituto de Investigação e Inovação em Saúde
- Subjects
0301 basic medicine ,Infertility ,endocrine system ,medicine.medical_specialty ,Physiology ,bisphenol A ,Clinical Biochemistry ,Review ,010501 environmental sciences ,medicine.disease_cause ,01 natural sciences ,Biochemistry ,male infertility ,Male infertility ,03 medical and health sciences ,Internal medicine ,medicine ,oxidative stress ,Molecular Biology ,Testosterone ,0105 earth and related environmental sciences ,urogenital system ,business.industry ,lcsh:RM1-950 ,Cell Biology ,phytochemicals ,medicine.disease ,Sperm ,endocrine disruptors ,antioxidants ,lcsh:Therapeutics. Pharmacology ,030104 developmental biology ,Endocrinology ,Endocrine disruptor ,Toxicity ,business ,Spermatogenesis ,hormones, hormone substitutes, and hormone antagonists ,Oxidative stress ,medicinal plants - Abstract
Bisphenol A (BPA), a well-known endocrine disruptor present in epoxy resins and poly-carbonate plastics, negatively disturbs the male reproductive system affecting male fertility. In vivo studies showed that BPA exposure has deleterious effects on spermatogenesis by disturbing the hypothalamic–pituitary–gonadal axis and inducing oxidative stress in testis. This compound seems to disrupt hormone signalling even at low concentrations, modifying the levels of inhibin B, oestradiol, and testosterone. The adverse effects on seminal parameters are mainly supported by studies based on urinary BPA concentration, showing a negative association between BPA levels and sperm concentration, motility, and sperm DNA damage. Recent studies explored potential approaches to treat or prevent BPA-induced testicular toxicity and male infertility. Since the effect of BPA on testicular cells and spermatozoa is associated with an increased production of reactive oxygen species, most of the pharmacological approaches are based on the use of natural or synthetic antioxidants. In this review, we briefly describe the effects of BPA on male reproductive health and discuss the use of antioxidants to prevent or revert the BPA-induced toxicity and infertility in men. This research was funded by Institute for Biomedicine—iBiMED, grant number UID/BIM/04501/2020 and by individual grant from FCT of the Portuguese Ministry of Science and Higher Education to J.S. (SFRH/BD/136896/2018).
- Published
- 2021
49. Relevance of peroxynitrite formation and 3-nitrotyrosine on spermatozoa physiology
- Author
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Daniel Filipe Cruz and Margarida Fardilha
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0301 basic medicine ,chemistry.chemical_classification ,Reactive oxygen species ,3-Nitrotyrosine ,Superoxide ,Rostrum ,Nitric oxide ,Protein oxidation ,medicine.disease_cause ,Spermatozoa ,Peroxynitrite ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Biochemistry ,Nitration ,Nitro ,medicine ,Superoxide anion ,Oxidative stress - Abstract
HIGHLIGHTS: Male fertility decline has been attributed, in part, to increased oxidative stress. Here we will focus on spermatozoa ROS, namely O2(•−), NO and ONOO(−) and their contribution to protein tyrosine nitration, namely by 3-NT formation. An in depth review will be made on the methods used to detect protein oxidation. Detecting 3-NT in sperm proteins will have a crucial clinical impact, namely on the follow up of anti-oxidant therapies. ABSTRACT: Infertility is a clinical condition that affects around 15% of reproductive-aged couples worldwide. Around half of these cases are due to male factors, the most owing to idiopathic causes. The increase of reactive oxygen species (ROS), which leads to oxidative stress (OS), has been discussed in the last years as a possible cause of male idiopathic infertility. Superoxide anion (O(2)(•−)) and nitric oxide (NO) can react with each other contributing to the formation of peroxynitrite (ONOO(−)). This molecule can then act on spermatozoa proteins, leading to nitration of protein tyrosines – addition of a nitro (NO(2)) group – that is then manifested by the formation of 3-nitrotyrosine (3-NT). In turn, 3-NT may be responsible for the alteration or inactivation of the protein function. This review will focus on the description of spermatozoa ROS, namely O(2)(•−), NO and ONOO(−) and in their contribution to protein tyrosine nitration, namely by 3-NT formation. Previous results about the effect of ONOO(−) and 3-NT in spermatozoa will be presented, as well as, the methods that can be performed to detect the protein oxidation by these species. The impact of measuring, at the clinical level, 3-NT, considered a marker of OS, in spermatozoa will be discussed.
- Published
- 2016
50. Investigation of spectroscopic and proteomic alterations underlying prostate carcinogenesis
- Author
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Nuno Maia, Steven L. Pelech, Juliana Felgueiras, Margarida Fardilha, Joana Silva, Alexandra Nunes, Inês Fernandes, and António Patrício
- Subjects
Male ,Proteomics ,0301 basic medicine ,Microarray ,Antibody microarray ,Carcinogenesis ,Biophysics ,Computational biology ,Biology ,Biochemistry ,03 medical and health sciences ,Prostate cancer ,Metabolomics ,Prostate ,Spectroscopy, Fourier Transform Infrared ,medicine ,Humans ,Protein phosphorylation ,Transcription factor ,Principal Component Analysis ,030102 biochemistry & molecular biology ,medicine.disease ,030104 developmental biology ,medicine.anatomical_structure - Abstract
Prostate cancer (PCa) treatment remains challenging, especially in advanced stages, where the lack of sensitivity and specificity of available biomarkers makes it difficult to establish an accurate prognosis. Therefore, it is imperative to study PCa biology to identify key molecules that can improve PCa management. In this study, eight prostate tumor tissues and paired normal tissues were analyzed using two approaches-Fourier-transform infrared (FT-IR) spectroscopy for spectroscopic profiling of biomolecules and antibody microarray for signaling proteins-with the main goal of identifying metabolic and proteomic changes that enable the distinction between normal and tumor conditions. Principal component analysis of FT-IR spectra revealed different spectroscopic signals for each condition. The most relevant changes in prostate tumor tissues identified by FT-IR were dysregulation in lipid metabolism, lower polysaccharide and glycogen content, higher nucleic acid content, and increased protein phosphorylation. Using an antibody microarray, 42 proteins were identified as differentially regulated between the two conditions; 14 of those revealed changes in their phosphorylation status. These proteins include transcription factors and kinases and constitute a highly-interconnected interaction network. Altogether, our data reveal metabolic and proteomic alterations that may be of interest in future translational studies aimed at establishing PCa prognosis and treatment. SIGNIFICANCE: Prostate tumor tissues and adjacent benign tissues were analyzed using two approaches-Fourier-transform infrared (FT-IR) spectroscopy for biomolecules and an antibody microarray for signaling proteins, which allowed to identify a panel of metabolic and proteomic alterations that may be of interest in future translational studies to enable the distinction between normal and tumor conditions.
- Published
- 2020
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