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Additional file 1: Supplementary figures S1-S17 and Supplementary Tables S1-S6.

Additional file 2. Review history.

Additional file 2. Review history.

Additional file 1: Table S1: Primer and probe sequences. a ~40-mer forward primers were also used as hybridization probes. (PDF 31 KB)

Additional file 4: Table S3: Putative α and β hemoglobin genes from other teleosts and Xenopus tropicalis used to generate phylogenetic trees. The table lists all predicted intact α and β hemoglobin genes indentified within Biomart [69] for teleost genomes that have been sequenced and annotated (medaka, zebrafish, tetraodon, danio) and Xenopus tropicalis, which was used as an outgroup. For each hemoglobin gene identified, the table lists the species, chromosome or scaffold, start and stop positions, strand of transcription, Ensembl gene ID and our assigned gene name used in the phylogenetic trees. (PDF 51 KB)

Additional file 2: Table S2A-C: Identified Atlantic salmon putatively functional and pseudogenized hemoglobin genes. S2A) Identified putatively functional Atlantic salmon α hemoglobin genes with chromosome, sequence contig number and approximate location (kb), strand of transcription, most highly similar Atlantic salmon EST cluster (if any), whether the gene has a corresponding full-length EST, whether the gene matches any of the previously published Atlantic salmon hemoglobin genes at the amino acid level and whether the gene is identical to any of those identified on the other Atlantic salmon chromosome. S2B) Identified putatively functional Atlantic salmon β hemoglobin genes with chromosome, sequence contig number and approximate location (kb), strand of transcription, most highly similar Atlantic salmon EST cluster (if any), whether the gene has a corresponding full-length EST, whether the gene matches any of the previously identified Atlantic salmon hemoglobin genes at the amino acid level, whether the gene is identical to any of those identified on the other Atlantic salmon chromosome, and whether the β hemoglobin gene possesses the hallmarks of lacking the Bohr effect. S2C) Putatively identified Atlantic salmon hemoglobin pseudogenes with chromosome, sequence contig, location (kb), direction and descriptions of each exon. (PDF 46 KB)

Authors’ original file for figure 5

Additional file of Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire

Additional file of Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire

Authors’ original file for figure 6

Authors’ original file for figure 5

Authors’ original file for figure 2

Additional file 2: Table S2A-C: Identified Atlantic salmon putatively functional and pseudogenized hemoglobin genes. S2A) Identified putatively functional Atlantic salmon α hemoglobin genes with chromosome, sequence contig number and approximate location (kb), strand of transcription, most highly similar Atlantic salmon EST cluster (if any), whether the gene has a corresponding full-length EST, whether the gene matches any of the previously published Atlantic salmon hemoglobin genes at the amino acid level and whether the gene is identical to any of those identified on the other Atlantic salmon chromosome. S2B) Identified putatively functional Atlantic salmon β hemoglobin genes with chromosome, sequence contig number and approximate location (kb), strand of transcription, most highly similar Atlantic salmon EST cluster (if any), whether the gene has a corresponding full-length EST, whether the gene matches any of the previously identified Atlantic salmon hemoglobin genes at the amino acid level, whether the gene is identical to any of those identified on the other Atlantic salmon chromosome, and whether the β hemoglobin gene possesses the hallmarks of lacking the Bohr effect. S2C) Putatively identified Atlantic salmon hemoglobin pseudogenes with chromosome, sequence contig, location (kb), direction and descriptions of each exon. (PDF 46 KB)

Additional file of Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire

Additional file of Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire

Authors’ original file for figure 4

Authors’ original file for figure 6

Additional file 1: Table S1: Primer and probe sequences. a ~40-mer forward primers were also used as hybridization probes. (PDF 31 KB)

Additional file of Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire

Authors’ original file for figure 4

Additional file of Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire

Additional file 4: Table S3: Putative α and β hemoglobin genes from other teleosts and Xenopus tropicalis used to generate phylogenetic trees. The table lists all predicted intact α and β hemoglobin genes indentified within Biomart [69] for teleost genomes that have been sequenced and annotated (medaka, zebrafish, tetraodon, danio) and Xenopus tropicalis, which was used as an outgroup. For each hemoglobin gene identified, the table lists the species, chromosome or scaffold, start and stop positions, strand of transcription, Ensembl gene ID and our assigned gene name used in the phylogenetic trees. (PDF 51 KB)

Authors’ original file for figure 2

Additional file of Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire