1. Tracking genetic diversity of SARS-CoV-2 infections in Ghana after one year of surveillance
- Author
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Israel Osei-Wusu, Samuel Armoo, Paul Owusu-Oduro, Sylvester Dassah, Samuel Akoriyea, Frederick Kumi-Ansah, Ivy Asante, Lucas Amenga-Etego, Nicaise Ndam, Victor Asoala, William Ampofo, Isaac Ogbe, Vincent Appiah, Bright Yemi, Collins Morang'a, Deborah Mettle, Dominic Amuzu, Emmanuel Allegye-Cudjoe, Michael Owusu, Dam Mibut, Emmanuella Amoako, Nicholas Amoako, Samirah Saiid, Kesego Tapela, Dennis Adu-Gyasi, Lawrence Ofori-Boadu, Philip Soglo, Oliver Boakye, Violette M'cormack, Enock Amoako, Augustina Sylverken, Precious Opurum, Abdul-Karim Abass, Peter Quashie, Reuben Ayivor-Djanie, Patrick Kuma-Aboagye, Jones Gyamfi, Joseph Oliver-Commey, Theophilus Odoom, Richard Phillips, Jerry Quaye, John Gyapong, Francis Dzabeng, Gordon Awandare, Frederick Tei-Maya, Kwabena Duedu, Vanessa Magnussen, Evelyn Quansah, Patrick Ababio, Joyce Ngoi, Kwaku Poku Asante, Edward Fenteng, Benjamin Nuertey, Rosina Carr, Yaw Bediako, and Mike Y. Osei-Atweneboana
- Subjects
Genetic diversity ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Tracking (education) ,Biology ,Virology - Abstract
This study sequenced 1077 SARS-CoV-2 genomes from patient isolates (106 from arriving travellers and 971 from communities) to track the molecular evolution and spatio-temporal dynamics of the SARS-CoV-2 variants in Ghana. The data show that initial local transmission was dominated by B.1.1 lineages, but the second wave in Ghana was overwhelmingly driven by the Alpha variant, which was detected in community cases from January 2021, with Eta also contributing to reported cases. Subsequently, an unheralded variant under monitoring, B.1.1.318, dominated transmission from April to June 2021 before being displaced by Delta (B.1.1.617) and Delta Plus (AY.*) variants, which were introduced into community transmission in May 2021 and have remained dominant to date. Mutational analysis indicated that variants that took hold in Ghana harboured transmission enhancing and immune escape spike substitutions. The apparent rapid viral evolution observed demonstrate the potential for emergence of novel variants with greater mutational fitness.
- Published
- 2021
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