41 results on '"Joao Matos"'
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2. Exploitation of construction objects in the aspect of the anthropopressure on the example of the Natural Education Centre 'Młynarzówka' in the Narew National Park
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Jerzy OBOLEWICZ, Adam BARYŁKA, and Joao MATOS Da COSTA
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General Mathematics - Abstract
Since the beginning of its existence mankind is using natural resources and applying them in construction techniques. The anthropogenic pressure induced by humans its clearly influencing the natural environment and so affecting its functional balance. Buildings are anthropogenic objects that enable mankind to inhabit its natural habitat according to their needs.This article discloses the use issues of buildings according to their anthropogenic pressure taken in consideration the example of a selected building.
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- 2022
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3. Indoor Near-Field Impact in the RADAR Signals for 6G Mobile Networks Integration
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Daniel Albuquerque, Beatriz Cruz, Carolina Gouveia, Vitor Coelho, Pedro Pinho, Joao Matos, Arnaldo Oliveira, and Nuno Carvalho
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- 2022
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4. Improving the lifestyle behavior of type 2 diabetes mellitus patients using a mobile application
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Andreia Pinto, Joao Viana, Diogo Martinho, Vitor Crista, Jose Miguel Diniz, Joana Reis, Joao Matos, David Greer, Goreti Marreiros, and Alberto Freitas
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- 2022
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5. Meiotic Nuclear Pore Complex Remodeling Provides Key Insights into Nuclear Basket Organization
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Grant A. King, Rahel Wettstein, Joseph M. Varberg, Keerthana Chetlapalli, Madison E. Walsh, Ludovic C.J. Gillet, Claudia Hernández-Armenta, Pedro Beltrao, Ruedi Aebersold, Sue L. Jaspersen, Joao Matos, and Elçin Ünal
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Nuclear Pore Complex Proteins ,Meiosis ,Schizosaccharomyces ,Nuclear Pore ,Mitosis ,Cell Biology - Abstract
Nuclear pore complexes (NPCs) are large proteinaceous assemblies that mediate nuclear compartmentalization. NPCs undergo large-scale structural rearrangements during mitosis in metazoans and some fungi. However, our understanding of NPC remodeling beyond mitosis remains limited. Using time-lapse fluorescence microscopy, we discovered that NPCs undergo two mechanistically separable remodeling events during budding yeast meiosis in which parts or all of the nuclear basket transiently dissociate from the NPC core during meiosis I and II, respectively. Meiosis I detachment, observed for Nup60 and Nup2, is driven by Polo kinase-mediated phosphorylation of Nup60 at its interface with the Y-complex. Subsequent reattachment of Nup60-Nup2 to the NPC core is facilitated by a lipid-binding amphipathic helix in Nup60. Preventing Nup60-Nup2 reattachment causes misorganization of the entire nuclear basket in gametes. Strikingly, meiotic nuclear basket remodeling also occurs in the distantly related fission yeast, Schizosaccharomyces pombe. Our study reveals a conserved and developmentally programmed aspect of NPC plasticity, providing key mechanistic insights into the nuclear basket organization., Journal of Cell Biology, 222 (2), ISSN:0021-9525, ISSN:1540-8140
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- 2022
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6. Early anticoagulation in atrial fibrillation-related acute ischaemic stroke: efficacy and safety profile
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Joao Matos-Ribeiro, Mariana Pintalhao, Paulo Castro-Chaves, Luísa Fonseca, and Marta Oliveira-Ferreira
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medicine.medical_specialty ,Neurology ,business.industry ,Stroke severity ,Anticoagulants ,Atrial fibrillation ,medicine.disease ,Brain Ischemia ,Stroke ,Safety profile ,Modified Rankin Scale ,Internal medicine ,Ischaemic stroke ,Atrial Fibrillation ,Medicine ,Humans ,In patient ,Neurology (clinical) ,business ,Neuroradiology ,Ischemic Stroke ,Retrospective Studies - Abstract
To evaluate the effects of early anticoagulation on functional outcome, recurrent ischaemic events and haemorrhagic complications in Atrial Fibrillation (AF)-related acute ischaemic strokes (AIS). We retrospectively evaluated patients hospitalised in a Stroke Unit due to AF-related AIS. Patients were divided according to anticoagulation initiation timing (0–4 days, 5–14 days, no anticoagulation by the 14th day). We assessed the following outcomes at 3 months: favourable functional outcome [modified Rankin Scale (mRS) score 0–2 or equal to pre-stroke], recurrent ischaemic events and haemorrhagic complications after anticoagulation initiation. We included 395 patients. Anticoagulation was initiated at days 0–4 in 33.9% of patients, days 5–14 in 25.3% and not initiated by the day 14 in 40.8%. Factors associated with earlier anticoagulation included lower previous mRS, valvular AF and lower stroke severity. Favourable functional outcome occurred in 40.2% of patients, with lower odds in those anticoagulated at 5–14 versus 0–4 days (OR: 0.47, 95% CI: 0.23–0.94), independently of age, previous mRS and stroke severity. Recurrent ischaemic events occurred in 8.3% of patients, with higher odds in non-anticoagulated patients by the 14th day, compared to the remainder groups (OR: 3.26, 95% CI: 1.29–8.22 vs. 0–4 days and OR: 8.16, 95% CI: 1.76–37.9 vs. 5–14 days). In patients who started anticoagulation (n = 288), haemorrhagic complications occurred in 10.8%, being more frequent in those who started at 0–4 days vs. > 14 days. However, it did not abolish the 0–4-day initiation’s benefit on functional outcome. Early anticoagulation was associated with lower ischaemic recurrence and better functional outcome at 3 months. Additional studies are needed to better clarify its haemorrhagic risk.
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- 2021
7. Decision letter: SUMO is a pervasive regulator of meiosis
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Adele L. Marston, Joao Matos, Donald S. Kirkpatrick, and Federico Pelisch
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Meiosis ,Regulator ,Biology ,Cell biology - Published
- 2020
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8. Author response: An advanced cell cycle tag toolbox reveals principles underlying temporal control of structure-selective nucleases
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Joao Matos, Rokas Grigaitis, Boris Pfander, Florian Wilfling, Silas Amarell, Lorenzo Galanti, and Julia Bittmann
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Structure (mathematical logic) ,Computer science ,Computational biology ,Cell cycle ,Control (linguistics) ,Toolbox - Published
- 2020
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9. Author response: Fully automated, sequential focused ion beam milling for cryo-electron tomography
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Joao Matos, Gregor L. Weiss, Martin Pilhofer, Tobias Zachs, Jannik Hugener, João M. Medeiros, and Andreas Schertel
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Materials science ,Optics ,Fully automated ,business.industry ,Cryo-electron tomography ,business ,Focused ion beam - Published
- 2020
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10. Treatment of a metabolic liver disease by in vivo genome base editing in adult mice
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Femke Ringnalda, Gerald Schwank, Hiu Man Grisch-Chan, Johannes Häberle, Beat Thöny, Lukas Villiger, Joao Matos, Ralph Fingerhut, Mark D. Robinson, Helen Lindsay, Gabriella Allegri, and Chiara Balbo Pogliano
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0301 basic medicine ,Phenylalanine hydroxylase ,biology ,Reversion ,General Medicine ,Phenotype ,Fusion protein ,General Biochemistry, Genetics and Molecular Biology ,Cell biology ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Genome editing ,In vivo ,biology.protein ,Gene ,DNA - Abstract
CRISPR-Cas-based genome editing holds great promise for targeting genetic disorders, including inborn errors of hepatocyte metabolism. Precise correction of disease-causing mutations in adult tissues in vivo, however, is challenging. It requires repair of Cas9-induced double-stranded DNA (dsDNA) breaks by homology-directed mechanisms, which are highly inefficient in nondividing cells. Here we corrected the disease phenotype of adult phenylalanine hydroxylase (Pah)enu2 mice, a model for the human autosomal recessive liver disease phenylketonuria (PKU)1, using recently developed CRISPR-Cas-associated base editors2-4. These systems enable conversion of C∙G to T∙A base pairs and vice versa, independent of dsDNA break formation and homology-directed repair (HDR). We engineered and validated an intein-split base editor, which allows splitting of the fusion protein into two parts, thereby circumventing the limited cargo capacity of adeno-associated virus (AAV) vectors. Intravenous injection of AAV-base editor systems resulted in Pahenu2 gene correction rates that restored physiological blood phenylalanine (L-Phe) levels below 120 µmol/l [5]. We observed mRNA correction rates up to 63%, restoration of phenylalanine hydroxylase (PAH) enzyme activity, and reversion of the light fur phenotype in Pahenu2 mice. Our findings suggest that targeting genetic diseases in vivo using AAV-mediated delivery of base-editing agents is feasible, demonstrating potential for therapeutic application.
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- 2018
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11. Regulation of the MLH1–MLH3 endonuclease in meiosis
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Jean-Baptiste Charbonnier, Aurore Sanchez, Elda Cannavo, Nicolas Weyland, Petr Cejka, Ananya Acharya, Lepakshi Ranjha, Valérie Borde, Roopesh Anand, Céline Adam, Jannik Hugener, Joao Matos, Xavier Aran-Guiu, Eva Hoffmann, Institut Curie [Paris], Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Enveloppe Nucléaire, Télomères et Réparation de l’ADN (INTGEN), Département Biochimie, Biophysique et Biologie Structurale (B3S), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), University of Zurich, and Cejka, Petr
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[SDV]Life Sciences [q-bio] ,Amino Acid Motifs ,Cell Cycle Proteins ,610 Medicine & health ,MLH3 ,Chromosomal crossover ,Chromosome segregation ,03 medical and health sciences ,Endonuclease ,chemistry.chemical_compound ,0302 clinical medicine ,Replication factor C ,Proliferating Cell Nuclear Antigen ,Holliday junction ,MutS Proteins ,Chromosomes, Human ,Humans ,Amino Acid Sequence ,Crossing Over, Genetic ,DNA Cleavage ,Replication Protein C ,Conserved Sequence ,030304 developmental biology ,0303 health sciences ,Nuclease ,DNA, Cruciform ,1000 Multidisciplinary ,Multidisciplinary ,biology ,Chemistry ,10061 Institute of Molecular Cancer Research ,DNA ,Endonucleases ,Cell biology ,Meiosis ,DNA Repair Enzymes ,Exodeoxyribonucleases ,MutL Proteins ,biology.protein ,570 Life sciences ,Homologous recombination ,MutL Protein Homolog 1 ,030217 neurology & neurosurgery - Abstract
SummaryDuring prophase of the first meiotic division, cells deliberately break their DNA. These DNA breaks are repaired by homologous recombination, which facilitates proper chromosome segregation and enables reciprocal exchange of DNA segments between homologous chromosomes, thus promoting genetic diversity in the progeny1. A successful completion of meiotic recombination requires nucleolytic processing of recombination intermediates. Genetic and cellular data implicated a pathway dependent on the putative MLH1-MLH3 (MutLγ) nuclease in generating crossovers, but mechanisms that lead to its activation were unclear2–4. Here, we have biochemically reconstituted key elements of this pro-crossover pathway. First, we show that human MSH4-MSH5 (MutSγ), which was known to support crossing over5–7, binds branched recombination intermediates and physically associates with MutLγ. This helps stabilize the ensemble at joint molecule structures and adjacent dsDNA. Second, we show that MutSγ directly stimulates DNA cleavage by the MutLγ endonuclease, which demonstrates a novel and unexpected function for MutSγ in triggering crossing-over. Third, we find that MutLγ activity is further stimulated by EXO1, but only when MutSγ is present. Fourth, we also identify the replication factor C (RFC) and the proliferating cell nuclear antigen (PCNA) as additional components of the nuclease ensemble, and show thatS. cerevisiaestrains expressing PIP box-mutated MutLγ present striking defects in forming crossovers. Finally, we show that the MutLγ-MutSγ-EXO1-RFC-PCNA nuclease ensemble preferentially cleaves DNA with Holliday junctions, but shows no canonical resolvase activity. Instead, the multilayered nuclease ensemble likely processes meiotic recombination intermediates by nicking dsDNA adjacent to junction points8. Since DNA nicking by MutLγ is dependent on its co-factors, the asymmetric distribution of MutSγ and RFC/PCNA on meiotic recombination intermediates may drive biased DNA cleavage. This unique mode of MutLγ nuclease activation might explain crossover-specific processing of Holliday junctions within the meiotic chromosomal context3, 9.
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- 2020
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12. Fully automated, sequential focused ion beam milling for cryo-electron tomography
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Andreas Schertel, Martin Pilhofer, Jannik Hugener, Gregor L. Weiss, Tobias Zachs, João M. Medeiros, and Joao Matos
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Electron Microscope Tomography ,Materials science ,Ion beam ,QH301-705.5 ,Science ,Structural Biology and Molecular Biophysics ,Polishing ,S. cerevisiae ,Nanotechnology ,Context (language use) ,Saccharomyces cerevisiae ,tomography ,Focused ion beam ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,sample thinning ,Biology (General) ,030304 developmental biology ,0303 health sciences ,in situ imaging ,Histocytological Preparation Techniques ,General Immunology and Microbiology ,sample preparation ,lamella ,General Neuroscience ,Molecular biophysics ,Cryoelectron Microscopy ,General Medicine ,Microtomy ,Anabaena ,Tools and Resources ,Lamella (surface anatomy) ,dual beam instrument ,Cryo-electron tomography ,Medicine ,Tomography ,Other ,030217 neurology & neurosurgery - Abstract
Cryo-electron tomography (cryoET) has become a powerful technique at the interface of structural biology and cell biology, due to its unique ability for imaging cells in their native state and determining structures of macromolecular complexes in their cellular context. A limitation of cryoET is its restriction to relatively thin samples. Sample thinning by cryo-focused ion beam (cryoFIB) milling has significantly expanded the range of samples that can be analyzed by cryoET. Unfortunately, cryoFIB milling is low-throughput, time-consuming and manual. Here, we report a method for fully automated sequential cryoFIB preparation of high-quality lamellae, including rough milling and polishing. We reproducibly applied this method to eukaryotic and bacterial model organisms, and show that the resulting lamellae are suitable for cryoET imaging and subtomogram averaging. Since our method reduces the time required for lamella preparation and minimizes the need for user input, we envision the technique will render previously inaccessible projects feasible., eLife, 9, ISSN:2050-084X
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- 2019
13. Dbf4-dependent kinase and the Rtt107 scaffold promote Mus81-Mms4 resolvase activation during mitosis
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Julia Bittmann, Boris Pfander, Lissa N. Princz, F Javier Aguado, Philipp Wild, Miguel G. Blanco, and Joao Matos
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0301 basic medicine ,Scaffold protein ,Cell cycle ,Genome stability ,Homologous recombination ,Joint molecule resolution ,Post-translational modification ,Saccharomyces cerevisiae Proteins ,DNA repair ,Flap Endonucleases ,post‐translational modification ,Mitosis ,Cell Cycle Proteins ,Polo-like kinase ,Saccharomyces cerevisiae ,Biology ,Protein Serine-Threonine Kinases ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Cyclin-dependent kinase ,Molecular Biology ,Protein-Serine-Threonine Kinases ,General Immunology and Microbiology ,General Neuroscience ,DNA Replication, Repair & Recombination ,Nuclear Proteins ,Articles ,Endonucleases ,MUS81 ,3. Good health ,Cell biology ,DNA-Binding Proteins ,Enzyme Activation ,030104 developmental biology ,biology.protein ,030217 neurology & neurosurgery - Abstract
DNA repair by homologous recombination is under stringent cell cycle control. This includes the last step of the reaction, disentanglement of DNA joint molecules (JMs). Previous work has established that JM resolving nucleases are activated specifically at the onset of mitosis. In case of budding yeast Mus81‐Mms4, this cell cycle stage‐specific activation is known to depend on phosphorylation by CDK and Cdc5 kinases. Here, we show that a third cell cycle kinase, Cdc7‐Dbf4 (DDK), targets Mus81‐Mms4 in conjunction with Cdc5—both kinases bind to as well as phosphorylate Mus81‐Mms4 in an interdependent manner. Moreover, DDK‐mediated phosphorylation of Mms4 is strictly required for Mus81 activation in mitosis, establishing DDK as a novel regulator of homologous recombination. The scaffold protein Rtt107, which binds the Mus81‐Mms4 complex, interacts with Cdc7 and thereby targets DDK and Cdc5 to the complex enabling full Mus81 activation. Therefore, Mus81 activation in mitosis involves at least three cell cycle kinases, CDK, Cdc5 and DDK. Furthermore, tethering of the kinases in a stable complex with Mus81 is critical for efficient JM resolution., The EMBO Journal, 36 (5), ISSN:0261-4189, ISSN:1460-2075
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- 2017
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14. Publisher Correction: Regulation of the MLH1–MLH3 endonuclease in meiosis
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Joao Matos, Eva Hoffmann, Céline Adam, Aurore Sanchez, Valérie Borde, Jean-Baptiste Charbonnier, Petr Cejka, Nicolas Weyland, Lepakshi Ranjha, Ananya Acharya, Roopesh Anand, Xavier Aran-Guiu, Elda Cannavo, and Jannik Hugener
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Genetics ,Endonuclease ,Multidisciplinary ,Meiosis ,Published Erratum ,biology.protein ,MLH3 ,Biology ,MLH1 - Published
- 2021
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15. Phosphorylation of the RecQ Helicase Sgs1/BLM Controls Its DNA Unwinding Activity during Meiosis and Mitosis
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Petr Cejka, Ilaria Ceppi, Matthias Peter, Adrian Henggeler, Kristina Kasaciunaite, Aitor Susperregui, Joao Matos, Philipp Wild, Lepakshi Ranjha, Rokas Grigaitis, Vera M. Kissling, and Ralf Seidel
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Saccharomyces cerevisiae Proteins ,DNA repair ,RecQ helicase ,Mitosis ,Cell Cycle Proteins ,Saccharomyces cerevisiae ,Protein Serine-Threonine Kinases ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,Cyclin-dependent kinase ,Phosphorylation ,DNA, Fungal ,Homologous Recombination ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,RecQ Helicases ,biology ,Helicase ,Cell Biology ,Processivity ,Cell biology ,Meiosis ,biology.protein ,Homologous recombination ,Protein Processing, Post-Translational ,030217 neurology & neurosurgery ,Developmental Biology ,Sgs1 - Abstract
Summary The Bloom’s helicase ortholog, Sgs1, orchestrates the formation and disengagement of recombination intermediates to enable controlled crossing-over during meiotic and mitotic DNA repair. Whether its enzymatic activity is temporally regulated to implement formation of noncrossovers prior to the activation of crossover-nucleases is unknown. Here, we show that, akin to the Mus81-Mms4, Yen1, and MutLγ-Exo1 nucleases, Sgs1 helicase function is under cell-cycle control through the actions of CDK and Cdc5 kinases. Notably, however, whereas CDK and Cdc5 unleash nuclease function during M phase, they act in concert to stimulate Sgs1 activity during S phase/prophase I. Mechanistically, CDK-mediated phosphorylation enhances the velocity and processivity of Sgs1, which stimulates DNA unwinding in vitro and joint molecule processing in vivo. Subsequent hyper-phosphorylation by Cdc5 appears to reduce the activity of Sgs1, while activating Mus81-Mms4 and MutLγ-Exo1. These findings suggest a concerted mechanism driving orderly formation of noncrossover and crossover recombinants in meiotic and mitotic cells.
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- 2020
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16. Regulatory Control of RecQ Helicase Sgs1/BLM During Meiosis and Mitosis
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Joao Matos, Philipp Wild, Aitor Susperregui, Vera M. Kissling, Matthias Peter, Petr Cejka, Ilaria Ceppi, Kristina Kasaciunaite, Ralf Seidel, Rokas Grigaitis, and Lepakshi Ranjha
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biology ,DNA repair ,Chemistry ,Cyclin-dependent kinase ,RecQ helicase ,biology.protein ,Polo kinase ,Helicase ,Processivity ,Mitosis ,Sgs1 ,Cell biology - Abstract
The Bloom’s helicase ortholog, Sgs1, orchestrates the formation and disengagement of DNA joint molecules to enable controlled crossing-over during meiotic and mitotic DNA repair. Whether its enzymatic activity is temporally regulated to implement formation of noncrossovers prior to the activation of crossover-nucleases is unknown. Here, we show that akin to the Mus81-Mms4, Yen1 and MutLγ-Exo1 nucleases, Sgs1 helicase function is under tight cell cycle control through the actions of CDK and Polo kinase Cdc5. Notably, however, whereas CDK and Cdc5 unleash nuclease function during M-phase, they collaboratively delimit Sgs1 activation to S-phase. Mechanistically, CDK-mediated phosphorylation enhances the velocity and processivity of Sgs1, which stimulates DNA unwinding in vitro and joint molecule processing in vivo. Subsequent hyper-phosphorylation by Cdc5 appears to reduce the activity of Sgs1, while activating Mus81-Mms4 and MutLγ-Exo1. These findings suggest a general mechanism that drives orderly formation of noncrossover and crossover recombinants in meiotic and mitotic cells.
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- 2019
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17. Fork Cleavage-Religation Cycle and Active Transcription Mediate Replication Restart after Fork Stalling at Co-transcriptional R-Loops
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Esin Isik, Nagaraja Chappidi, Martin Andrs, Antonio Porro, Chiara Balbo Pogliano, Jana Dobrovolna, Massimo Lopes, Pavel Janscak, Ralph Zellweger, Zuzana Nascakova, Shruti Menon, Barbora Boleslavska, and Joao Matos
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Replication fork reversal ,DNA Replication ,DNA Ligases ,Transcription, Genetic ,DNA polymerase ,Semiconservative replication ,03 medical and health sciences ,0302 clinical medicine ,Transcription (biology) ,Cell Line, Tumor ,Humans ,Molecular Biology ,030304 developmental biology ,DNA Polymerase III ,chemistry.chemical_classification ,0303 health sciences ,DNA ligase ,Endodeoxyribonucleases ,biology ,RecQ Helicases ,fungi ,DNA replication ,Helicase ,Cell Biology ,Endonucleases ,Branch migration ,Cell biology ,Rad52 DNA Repair and Recombination Protein ,DNA-Binding Proteins ,enzymes and coenzymes (carbohydrates) ,chemistry ,biology.protein ,Rad51 Recombinase ,R-Loop Structures ,030217 neurology & neurosurgery ,HeLa Cells - Abstract
Formation of co-transcriptional R-loops underlies replication fork stalling upon head-on transcription-replication encounters. Here, we demonstrate that RAD51-dependent replication fork reversal induced by R-loops is followed by the restart of semiconservative DNA replication mediated by RECQ1 and RECQ5 helicases, MUS81/EME1 endonuclease, RAD52 strand-annealing factor, the DNA ligase IV (LIG4)/XRCC4 complex, and the non-catalytic subunit of DNA polymerase δ, POLD3. RECQ5 disrupts RAD51 filaments assembled on stalled forks after RECQ1-mediated reverse branch migration, preventing a new round of fork reversal and facilitating fork cleavage by MUS81/EME1. MUS81-dependent DNA breaks accumulate in cells lacking RAD52 or LIG4 upon induction of R-loop formation, suggesting that RAD52 acts in concert with LIG4/XRCC4 to catalyze fork religation, thereby mediating replication restart. The resumption of DNA synthesis after R-loop-associated fork stalling also requires active transcription, the restoration of which depends on MUS81, RAD52, LIG4, and the transcription elongation factor ELL. These findings provide mechanistic insights into transcription-replication conflict resolution.
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- 2018
18. Characterization of DNA helicases and nucleases from meiotic extracts of S. cerevisiae
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Rokas, Grigaitis, Aitor, Susperregui, Philipp, Wild, and Joao, Matos
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Solutions ,Meiosis ,Saccharomyces cerevisiae Proteins ,DNA Helicases ,Crossing Over, Genetic ,Saccharomyces cerevisiae ,Endonucleases ,Prophase ,Metaphase ,Substrate Specificity - Abstract
The formation of stable interactions between chromosomes of maternal and paternal origin-homologs-is required for their segregation during meiosis. To achieve this, cells take advantage of the recombination machinery, which promotes formation of reciprocal interhomolog exchanges, called crossovers, from the repair of self-inflicted DNA breaks. Important genetic studies led to the identification of key enzymes that control meiotic recombination. However, characterization of their biochemical properties when purified from meiotic cultures has been difficult to achieve. Here, we describe a simple approach to purify and characterize DNA repair enzymes from meiotic yeast cells. First, we provide a protocol to generate large-scale synchronous cultures. Second, we describe a general method to prepare meiotic extracts from which protein complexes can be immunoaffinity-purified. Finally, we detail how the purified material can be used for: (i) mass spectrometry-based analysis of interaction partners and posttranslational modifications, and (ii) monitoring enzymatic activities using synthetic DNA substrates.
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- 2018
19. Cell cycle control of DNA joint molecule resolution
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Philipp Wild and Joao Matos
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0301 basic medicine ,Genetics ,DNA, Cruciform ,Cell division ,DNA Repair ,DNA repair ,Cell Cycle ,Cell Biology ,DNA ,Cell cycle ,Biology ,MUS81 ,Genome ,Chromosomes ,Chromosome segregation ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Chromosome Segregation ,Saccharomycetales ,Animals ,Humans ,Mitosis - Abstract
The establishment of stable interactions between chromosomes underpins vital cellular processes such as recombinational DNA repair and bipolar chromosome segregation. On the other hand, timely disengagement of persistent connections is necessary to assure efficient partitioning of the replicated genome prior to cell division. Whereas great progress has been made in defining how cohesin-mediated chromosomal interactions are disengaged as cells prepare to undergo chromosome segregation, little is known about the metabolism of DNA joint molecules (JMs), generated during the repair of chromosomal lesions. Recent work on Mus81 and Yen1/GEN1, two conserved structure-selective endonucleases, revealed unforeseen links between JM-processing and cell cycle progression. Cell cycle kinases and phosphatases control Mus81 and Yen1/GEN1 to restrain deleterious JM-processing during S-phase, while safeguarding chromosome segregation during mitosis.
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- 2016
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20. Analysis of Structure-Selective Endonuclease Activities From Yeast and Human Extracts
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Joao, Matos and Stephen C, West
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DNA-Binding Proteins ,Epitopes ,Saccharomyces cerevisiae Proteins ,Protein Conformation ,Humans ,Electrophoresis, Polyacrylamide Gel ,Saccharomyces cerevisiae ,Endonucleases ,HeLa Cells - Abstract
The efficient separation of two equal DNA masses to the daughter cells is an essential step in mitosis. This process is dependent upon the removal of any remaining recombination or replication intermediates that link sister chromatids, and a failure to resolve these intermediates leads to genome instability. Similarly, a failure to resolve meiotic recombination intermediates that link homologous chromosomes can cause chromosome nondisjunction and aneuploidy. Cleavage of these potentially toxic replication/recombination intermediates requires the Mus81 endonuclease, which is active upon flaps, forks, and more complex secondary structures in DNA such as Holliday junctions. Recent studies of Mus81 revealed that it is regulated throughout the cell cycle: Mus81 activity is controlled in S-phase to limit the cleavage of replication fork structures, whereas it is activated at G2/M to ensure the cleavage of recombination and late replication intermediates. In this chapter, we describe a simple method that can monitor the activity of Mus81, which involves the immunoprecipitation of epitope-tagged Mus81 and use of an on-bead assay for nuclease activity.
- Published
- 2017
21. Adrenocortical carcinoma - casuistic analysis
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Maria Joao Matos, João Lobo, A. Mesquita, Sousa Joaquim Abreu de, Cátia Ribeiro, Pedro Antunes, Mariana Peyroteo, A. Moreira, Cristina Sanches, and Pedro Martins
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business.industry ,Cancer research ,Medicine ,Adrenocortical carcinoma ,business ,medicine.disease - Published
- 2017
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22. Author response: Functional mapping of yeast genomes by saturated transposition
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Matthias Peter, Claudio De Virgilio, Agnès H. Michel, Joao Matos, Meret Arter, Benoît Kornmann, Riko Hatakeyama, and Philipp Kimmig
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Transposition (music) ,Functional mapping ,Computational biology ,Biology ,Genome ,Yeast - Published
- 2017
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23. Control of Mus81 nuclease during the cell cycle
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Joao Matos and Boris Pfander
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0301 basic medicine ,DNA re-replication ,Biophysics ,Eukaryotic DNA replication ,Saccharomyces cerevisiae ,Biology ,Pre-replication complex ,Biochemistry ,03 medical and health sciences ,Control of chromosome duplication ,Structural Biology ,Genetics ,Animals ,Humans ,Molecular Biology ,Replication protein A ,Cell Cycle ,DNA replication ,Cell Biology ,cell cycle ,DNA repair ,homologous recombination ,joint molecule resolution ,nuclases ,post-translational modification ,Endonucleases ,Cell biology ,DNA-Binding Proteins ,030104 developmental biology ,Origin recognition complex ,Homologous recombination - Abstract
DNA replication and homologous recombination involve the formation of branched DNA structures that physically link chromosomes. Such DNA-based connections, which arise during S-phase, are typically disengaged prior to entry into mitosis, in order to ensure proper chromosome segregation. Exceptions can, however, occur: replication stress, or elevated levels of DNA damage, may cause cells to enter mitosis with unfinished replication as well as carrying recombination intermediates, such as Holliday junctions. Hence, cells are equipped with pathways that recognize and process branched DNA structures, and evolved mechanisms to enhance their function when on the verge of undergoing cell division. One of these pathways utilizes the structure-selective endonuclease Mus81, which is thought to facilitate the resolution of replication and recombination intermediates. Mus81 function is known to be enhanced upon entry into M phase in budding yeast and human cells. Based on recent findings, we discuss here an updated model of Mus81 control during the cell cycle.
- Published
- 2017
24. Holliday junction resolution: Regulation in space and time
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Stephen C. West and Joao Matos
- Subjects
Slx1 ,Yen1 ,Resolvase ,DNA repair ,Slx4 ,Saccharomyces cerevisiae ,Biology ,Cdc5 ,Biochemistry ,Chromosomes ,Article ,EME1 ,Chromosome segregation ,Nuclease ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Chromosome Segregation ,Homologous chromosome ,Holliday junction ,Humans ,Sister chromatids ,Mus81 ,Homologous Recombination ,Mms4 ,Molecular Biology ,030304 developmental biology ,Genetics ,DNA, Cruciform ,0303 health sciences ,Holliday Junction Resolvases ,Cell Biology ,Cell-cycle ,MUS81 ,Recombination ,Cell biology ,DNA-Binding Proteins ,chemistry ,GEN1 ,PLK1 ,Homologous recombination ,030217 neurology & neurosurgery ,DNA - Abstract
Holliday junctions (HJs) can be formed between sister chromatids or homologous chromosomes during the recombinational repair of DNA lesions. A variety of pathways act upon HJs to remove them from DNA, in events that are critical for appropriate chromosome segregation. Despite the identification and characterization of multiple enzymes involved in HJ processing, the cellular mechanisms that regulate and implement pathway usage have only just started to be delineated. A conserved network of core cell-cycle kinases and phosphatases modulate HJ metabolism by exerting spatial and temporal control over the activities of two structure-selective nucleases: yeast Mus81-Mms4 (human MUS81-EME1) and Yen1 (human GEN1). These regulatory cycles operate to establish the sequential activation of HJ processing enzymes, implementing a hierarchy in pathway usage that ensure the elimination of chromosomal interactions which would otherwise interfere with chromosome segregation. Mus81-Mms4/EME1 and Yen1/GEN1 emerge to define a special class of enzymes, evolved to satisfy the cellular need of safeguarding the completion of DNA repair when on the verge of chromosome segregation.
- Published
- 2014
- Full Text
- View/download PDF
25. Coordinated Actions of SLX1-SLX4 and MUS81-EME1 for Holliday Junction Resolution in Human Cells
- Author
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Shriparna Sarbajna, Stephen C. West, Joao Matos, and Haley D.M. Wyatt
- Subjects
Tn3 transposon ,DNA Repair ,Immunoblotting ,Oligonucleotides ,Biology ,Cleavage (embryo) ,Substrate Specificity ,Recombinases ,Chromosome segregation ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Holliday junction ,Humans ,Molecular Biology ,Cell Line, Transformed ,030304 developmental biology ,DNA, Cruciform ,0303 health sciences ,Endodeoxyribonucleases ,Base Sequence ,Models, Genetic ,Holliday Junction Resolvases ,Cell Biology ,Endonucleases ,Flow Cytometry ,MUS81 ,Molecular biology ,Cell biology ,DNA-Binding Proteins ,G2 Phase Cell Cycle Checkpoints ,chemistry ,Phosphorylation ,RNA Interference ,Homologous recombination ,Sister Chromatid Exchange ,030217 neurology & neurosurgery ,DNA ,HeLa Cells ,Protein Binding - Abstract
Holliday junctions (HJs) are four-way DNA intermediates that form during homologous recombination, and their efficient resolution is essential for chromosome segregation. Here, we show that three structure-selective endonucleases, namely SLX1-SLX4, MUS81-EME1, and GEN1, define two pathways of HJ resolution in human cells. One pathway is mediated by GEN1, whereas SLX1-SLX4 and MUS81-EME1 provide a second and genetically distinct pathway (SLX-MUS). Cells depleted for SLX-MUS or GEN1 pathway proteins exhibit severe defects in chromosome segregation and reduced survival. In response to CDK-mediated phosphorylation, SLX1-SLX4 and MUS81-EME1 associate at the G2/M transition to form a stable SLX-MUS holoenzyme, which can be reconstituted in vitro. Biochemical studies show that SLX-MUS is a HJ resolvase that coordinates the active sites of two distinct endonucleases during HJ resolution. This cleavage reaction is more efficient and orchestrated than that mediated by SLX1-SLX4 alone, which exhibits a potent nickase activity that acts promiscuously upon DNA secondary structures.
- Published
- 2013
- Full Text
- View/download PDF
26. IoT enabled aquatic drone for environmental monitoring
- Author
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Joao Matos and Octavian Postolache
- Subjects
Data processing ,Engineering ,business.industry ,Real-time computing ,020206 networking & telecommunications ,02 engineering and technology ,Field (computer science) ,Drone ,Data visualization ,Embedded system ,Environmental monitoring ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,Underwater ,business ,Air quality index ,Server-side - Abstract
The article describes a monitoring system based on Raspberry Pi platform and a multichannel sensing module associated with water quality and air quality measurement parameters. Thus the temperature, conductivity, relative humidity and gas concentration are measured as was as the underwater acoustic signals. The data is stored on the memory of the drone's computational platform, and synchronized with a remote server database. Advanced data processing algorithms were implemented on the server side. Additionally, a mobile application was developed to be used by people working in the field for data visualization and statistical analysis.
- Published
- 2016
- Full Text
- View/download PDF
27. Functional overlap between the structure-specific nucleases Yen1 and Mus81-Mms4 for DNA-damage repair in S. cerevisiae
- Author
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Joao Matos, Stephen C.Y. Ip, Stephen C. West, Miguel G. Blanco, and Ulrich Rass
- Subjects
Saccharomyces cerevisiae Proteins ,DNA Repair ,Flap Endonucleases ,DNA repair ,RAD52 ,Saccharomyces cerevisiae ,Biology ,Biochemistry ,chemistry.chemical_compound ,Holliday junction ,Postreplication repair ,DNA Breaks, Double-Stranded ,DNA, Fungal ,Molecular Biology ,Replication protein A ,Holliday Junction Resolvases ,Cell Biology ,Endonucleases ,Molecular biology ,MUS81 ,Cell biology ,DNA-Binding Proteins ,chemistry ,Homologous recombination ,DNA ,DNA Damage - Abstract
In eukaryotic cells, multiple DNA repair mechanisms respond to a wide variety of DNA lesions. Homologous recombination-dependent repair provides a pathway for dealing with DNA double-strand breaks and replication fork demise. A key step in this process is the resolution of recombination intermediates such as Holliday junctions (HJs). Recently, nucleases from yeast (Yen1) and human cells (GEN1) were identified that can resolve HJ intermediates, in a manner analogous to the E. coli HJ resolvase RuvC. Here, we have analyzed the role of Yen1 in DNA repair in S. cerevisiae, and show that while yen1Delta mutants are repair-proficient, yen1Delta mus81Delta double mutants are exquisitely sensitive to a variety of DNA-damaging agents that disturb replication fork progression. This phenotype is dependent upon RAD52, indicating that toxic recombination intermediates accumulate in the absence of Yen1 and Mus81. After MMS treatment, yen1Delta mus81Delta double mutants arrest with a G2 DNA content and unsegregated chromosomes. These findings indicate that Yen1 can act upon recombination/repair intermediates that arise in MUS81-defective cells following replication fork damage.
- Published
- 2010
- Full Text
- View/download PDF
28. Dbf4-Dependent Cdc7 Kinase Links DNA Replication to the Segregation of Homologous Chromosomes in Meiosis I
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Elwy Okaz, Jesse J. Lipp, Wolfgang Zachariae, Joao Matos, Andrej Shevchenko, Aliona Bogdanova, Sylvine Guillot, and Magno Junqueira
- Subjects
DNA Replication ,Saccharomyces cerevisiae Proteins ,Cell Cycle Proteins ,CELLCYCLE ,Saccharomyces cerevisiae ,Biology ,Protein Serine-Threonine Kinases ,Microtubules ,Models, Biological ,General Biochemistry, Genetics and Molecular Biology ,Chromosomes ,Chromosome segregation ,Control of chromosome duplication ,Monopolin complex ,Sister chromatids ,Kinetochores ,Genetics ,Cohesin ,Models, Genetic ,Biochemistry, Genetics and Molecular Biology(all) ,Cell Cycle ,Nuclear Proteins ,DNA ,Monopolin ,Establishment of sister chromatid cohesion ,Meiosis ,Origin recognition complex ,Protein Kinases ,Gene Deletion - Abstract
SummaryMeiosis differs from mitosis in that DNA replication is followed by the segregation of homologous chromosomes but not sister chromatids. This depends on the formation of interhomolog connections through crossover recombination and on the attachment of sister kinetochores to microtubules emanating from the same spindle pole. We show that in yeast, the Dbf4-dependent Cdc7 kinase (DDK) provides a link between premeiotic S phase, recombination, and monopolar attachment. Independently from its established role in initiating DNA replication, DDK promotes double-strand break formation, the first step of recombination, and the recruitment of the monopolin complex to kinetochores, which is essential for monopolar attachment. DDK regulates monopolin localization together with the polo-kinase Cdc5 bound to Spo13, probably through phosphorylation of the monopolin subunit Lrs4. Thus, activation of DDK both initiates DNA replication and commits meiotic cells to reductional chromosome segregation in the first division of meiosis.
- Published
- 2008
- Full Text
- View/download PDF
29. Resolution of Recombination Intermediates: Mechanisms and Regulation
- Author
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Joao Matos, Stephen C. West, Miguel G. Blanco, Ying Wai Chan, Haley D.M. Wyatt, and Shriparna Sarbajna
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Loss of Heterozygosity ,Sister chromatid exchange ,Biology ,Biochemistry ,DNA Strand Break ,Chromosome segregation ,Recombinases ,chemistry.chemical_compound ,Genetics ,Holliday junction ,Sister chromatids ,Animals ,Humans ,Molecular Biology ,Mitosis ,DNA, Cruciform ,Endodeoxyribonucleases ,RecQ Helicases ,Holliday Junction Resolvases ,Nuclear Proteins ,Recombinational DNA Repair ,Endonucleases ,Cell biology ,DNA-Binding Proteins ,chemistry ,DNA Topoisomerases, Type I ,Homologous recombination ,Carrier Proteins ,Sister Chromatid Exchange ,DNA - Abstract
DNA strand break repair by homologous recombination leads to the formation of intermediates in which sister chromatids are covalently linked. The efficient processing of these joint molecules, which often contain four-way structures known as Holliday junctions, is necessary for efficient chromosome segregation during mitotic division. Because persistent chromosome bridges pose a threat to genome stability, cells ensure the complete elimination of joint molecules through three independent pathways. These involve (1) BLM-Topoisomerase IIIα-RMI1-RMI2 (BTR complex), (2) SLX1-SLX4-MUS81-EME1 (SLX-MUS complex), and (3) GEN1. The BTR pathway promotes the dissolution of double Holliday junctions, which avoids the formation of crossover products, prevents sister chromatid exchanges, and limits the potential for loss of heterozygosity. In contrast to BTR, the other two pathways resolve Holliday junctions by nucleolytic cleavage to yield crossover and non-crossover products. To avoid competition with BTR, the resolution pathways are restrained until the late stages of the cell cycle. The temporal regulation of the dissolution/resolution pathways is therefore critical for crossover avoidance while also ensuring that all covalent links between chromosomes are resolved before chromosome segregation.
- Published
- 2015
- Full Text
- View/download PDF
30. Cell-cycle kinases coordinate the resolution of recombination intermediates with chromosome segregation
- Author
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Stephen C. West, Joao Matos, and Miguel G. Blanco
- Subjects
Saccharomyces cerevisiae Proteins ,Chromosomal Proteins, Non-Histone ,Flap Endonucleases ,Mutant ,Molecular Sequence Data ,Cell Cycle Proteins ,Saccharomyces cerevisiae ,Biology ,Protein Serine-Threonine Kinases ,General Biochemistry, Genetics and Molecular Biology ,Chromosome segregation ,Loss of heterozygosity ,03 medical and health sciences ,0302 clinical medicine ,Cyclin-dependent kinase ,Chromosome Segregation ,Amino Acid Sequence ,Homologous Recombination ,lcsh:QH301-705.5 ,030304 developmental biology ,Anaphase ,Genetics ,0303 health sciences ,Cohesin ,Chromosome ,Endonucleases ,DNA-Binding Proteins ,lcsh:Biology (General) ,Mutation ,biology.protein ,Homologous recombination ,CDC28 Protein Kinase, S cerevisiae ,030217 neurology & neurosurgery - Abstract
SummaryHomologous recombination leads to the formation of DNA joint molecules (JMs) that must be resolved to allow chromosome segregation, but how resolution is temporally coupled with chromosome segregation is unknown. Here, we have analyzed the role of the cell-cycle kinases Cdk and Cdc5 in coordinating these events through their involvement in the phosphoregulation of the Mus81-Mms4 nuclease. By identifying CDC5 and MMS4 mutants that uncouple Mus81-Mms4 activation from cell-cycle progression, we show that JM disengagement, prior to anaphase initiation, safeguards chromosome segregation. By simultaneously stimulating the cleavage of cohesin and activating Mus81-Mms4 at the G2/M transition, Cdk and Cdc5 coordinate the sequential elimination of all chromosomal interactions in preparation for chromosome segregation. Conversely, untimely Cdc5 expression increases crossover frequency due to premature activation of Mus81-Mms4. Therefore, temporal restriction of JM resolution, imposed by Cdk/Cdc5, minimizes the potential for loss of heterozygosity while preventing chromosome missegregation and aneuploidy.
- Published
- 2013
31. Editorial: monoamine oxidase as a target in medicinal chemistry and drug discovery
- Author
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Dolores, Vina and Maria, Joao Matos
- Subjects
Biogenic Amines ,Drug Discovery ,Animals ,Humans ,Molecular Targeted Therapy ,Monoamine Oxidase - Published
- 2012
32. MODERNIZAÇÃO E DIVERSIFICAÇÃO COM MINIMIZAÇÃO DE RISCOS NA AGRICULTURA FAMILIAR:A EXPERIÊNCIA DO PROJETO DE ASSENTAMENTO BOM CONSELHO NO MUNICÍPIO DE MACAÍBA/RN
- Author
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Joao, Joao Matos and De Menezes, Sebastiao Francisco
- Subjects
política agrária, crédito fundiário, assentamento rural, agricultura familiar, política pública, Agribusiness, Community/Rural/Urban Development, Political Economy - Abstract
Analisa a experiência com a implementação do Projeto de Crédito Fundiário e Combate à Pobreza Rural (PCF), tomando, como estudo de caso, o Projeto de Assentamento Bom Conselho, no município de Macaíba, estado do Rio Grande do Norte. Resume as principais contribuições teóricas sobre o processo recente de modernização da agricultura brasileira e destaca as formas de organização da produção que emergiram desse processo de modernização, entre as quais se inclui a agricultura familiar modernizada e integrada aos circuitos de produção e de mercado. Os dados empíricos para elaboração do estudo de caso foram obtidos em pesquisa documental e em levantamento de campo, durante o qual foram realizadas observações diretas dos plantios e criações existentes no assentamento, além entrevistas com os gestores da associação responsável pelo projeto. A análise dos dados empíricos mostrou que a implementação do PCF – integrada com o Programa de Combate a Pobreza Rural (PCPR) e o Programa Nacional de Fortalecimento da Agricultura Familiar (PRONAF) – teve efeitos bastante significativos, tanto do ponto de vista da renda, quanto do emprego e da segurança alimentar no assentamento pesquisado. Além disso, ficou evidente que a agricultura familiar é capaz de incorporar progresso técnico, diversificar a produção, participar dos mercados de produtos agrícolas diretamente ou por intermédio de uma empresa âncora. Por último, mas não menos importante, ficou comprovado que a reestruturação fundiária não é um programa meramente social, mas um elemento estratégico da mais alta relevância para o desenvolvimento rural em bases sustentáveis.
- Published
- 2006
33. INTEGRAÇÃO DAS POLÍTICAS PÚBLICAS NA ESCALA TERRITORIAL: REFLEXÕES A PARTIR DA EXPERIÊNCIA DO RIO GRANDE DO NORTE
- Author
-
Joao, Joao Matos
- Subjects
desenvolvimento territorial, gestão pública, políticas públicas, desenvolvimento sustentável, atores sociais, Political Economy, Public Economics - Abstract
Apresenta os antecedentes das políticas de desenvolvimento territorial e das formas de gestão pública. Identifica, para tanto, as principais contribuições teóricas contemporâneas no campo do desenvolvimento e da análise de políticas públicas. Explora as atuais experiências de integração de políticas e de atores sociais - nas escalas regional, micro-regional e comunitária no estado do Rio Grande do Norte. Elabora estudo de casos, a saber, o Plano de Desenvolvimento Sustentável da Região do Seridó e mais 04 (quatro) experiências de projetos micro-territoriais financiados pelo Projeto de Combate à Pobreza Rural (PCPR) e por outras políticas, de forma integrada. Analisa os principais atores, as organizações participantes e os arranjos institucionais utilizados nos processos de formulação e implementação, em cada um desses casos. Conclui que os arranjos institucionais descentralizados e participativos e a existência de lideranças e assessores técnicos qualificados e comprometidos com as questões do desenvolvimento e da governança local foram decisivos para o êxito das experiências analisadas. Verifica que, apesar disso, os gestores públicos ainda utilizam pouco as lições que podem ser tiradas, tanto do legado histórico - principalmente no campo da formação e da qualificação de lideranças e técnicos -, quanto das experiências bem sucedidas, que podem ser replicadas com sucesso. É possível e desejável que estas últimas experiências se reproduzam, em face de sua ausência e/ou viabilidade, naquele contexto regional.
- Published
- 2006
34. The yeast APC/C subunit Mnd2 prevents premature sister chromatid separation triggered by the meiosis-specific APC/C-Ama1
- Author
-
Aliona Bogdanova, Wolfgang Zachariae, Alain Camasses, Jan Havliš, Martin Schwickart, Andrej Shevchenko, Tobias Oelschlaegel, and Joao Matos
- Subjects
Protein Denaturation ,Saccharomyces cerevisiae Proteins ,Cdc20 Proteins ,Cell Cycle Proteins ,Saccharomyces cerevisiae ,Biology ,Chromatids ,General Biochemistry, Genetics and Molecular Biology ,Anaphase-Promoting Complex-Cyclosome ,APC/C activator protein CDH1 ,Chromosome segregation ,Prophase ,Chromosome Segregation ,CDC2 Protein Kinase ,Endopeptidases ,Sister chromatids ,Separase ,Biochemistry, Genetics and Molecular Biology(all) ,Nuclear Proteins ,Ubiquitin-Protein Ligase Complexes ,Molecular biology ,Establishment of sister chromatid cohesion ,Securin ,Meiosis ,Chromatid ,Anaphase-promoting complex ,Anaphase ,CDC28 Protein Kinase, S cerevisiae - Abstract
SummaryCohesion established between sister chromatids during pre-meiotic DNA replication mediates two rounds of chromosome segregation. The first division is preceded by an extended prophase wherein homologous chromosomes undergo recombination. The persistence of cohesion during prophase is essential for recombination and both meiotic divisions. Here we show that Mnd2, a subunit of the anaphase-promoting complex (APC/C) from budding yeast, is essential to prevent premature destruction of cohesion in meiosis. During S- and prophase, Mnd2 prevents activation of the APC/C by a meiosis-specific activator called Ama1. In cells lacking Mnd2 the APC/C-Ama1 enzyme triggers degradation of Pds1, which causes premature sister chromatid separation due to unrestrained separase activity. In vitro, Mnd2 inhibits ubiquitination of Pds1 by APC/C-Ama1 but not by other APC/C holo-enzymes. We conclude that chromosome segregation in meiosis depends on the selective inhibition of a meiosis-specific form of the APC/C.
- Published
- 2004
35. Spo13 facilitates monopolin recruitment to kinetochores and regulates maintenance of centromeric cohesion during yeast meiosis
- Author
-
Saori Mori, Wolfgang Zachariae, Kim Nasmyth, Katsuhiko Shirahige, Vittorio L. Katis, and Joao Matos
- Subjects
Saccharomyces cerevisiae Proteins ,Blotting, Western ,Centromere ,Cell Cycle Proteins ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Monopolin complex ,Chromosome Segregation ,Yeasts ,Homologous chromosome ,Immunoprecipitation ,Interkinesis ,Kinetochores ,Genetics ,Cohesin ,Agricultural and Biological Sciences(all) ,Biochemistry, Genetics and Molecular Biology(all) ,Meiosis II ,Nuclear Proteins ,Phosphoproteins ,Monopolin ,Establishment of sister chromatid cohesion ,Securin ,Meiosis ,ATP-Binding Cassette Transporters ,Schizosaccharomyces pombe Proteins ,Separase ,General Agricultural and Biological Sciences - Abstract
Background: Cells undergoing meiosis perform two consecutive divisions after a single round of DNA replication. During the first meiotic division, homologous chromosomes segregate to opposite poles. This is achieved by (1) the pairing of maternal and paternal chromosomes via recombination producing chiasmata, (2) coorientation of homologous chromosomes such that sister chromatids attach to the same spindle pole, and (3) resolution of chiasmata by proteolytic cleavage by separase of the meiotic-specific cohesin Rec8 along chromosome arms. Crucially, cohesin at centromeres is retained to allow sister centromeres to biorient at the second division. Little is known about how these meiosis I-specific events are regulated. Results: Here, we show that Spo13, a centromere-associated protein produced exclusively during meiosis I, is required to prevent sister kinetochore biorientation by facilitating the recruitment of the monopolin complex to kinetochores. Spo13 is also required for the reaccumulation of securin, the persistence of centromeric cohesin during meiosis II, and the maintenance of a metaphase I arrest induced by downregulation of the APC/C activator CDC20. Conclusion: Spo13 is a key regulator of several meiosis I events. The presence of Spo13 at centromere-surrounding regions is consistent with the notion that it plays a direct role in both monopolin recruitment to centromeres during meiosis I and maintenance of centromeric cohesion between the meiotic divisions. Spo13 may also limit separase activity after the first division by ensuring securin reaccumulation and, in doing so, preventing precocious removal from chromatin of centromeric cohesin.
- Published
- 2004
36. Editorial (Hot Topic: Monoamine Oxidase as a Target in Medicinal Chemistry and Drug Discovery)
- Author
-
Vina D and Joao Matos M
- Subjects
Chemistry ,Monoamine oxidase ,Drug discovery ,Drug Discovery ,General Medicine ,Pharmacology - Published
- 2012
- Full Text
- View/download PDF
37. Architecture and traffic modelling of a utility metering wireless sensor network
- Author
-
Lucia Martins, Luis A. da Silva Cruz, and Joao Matos
- Subjects
Routing protocol ,Engineering ,business.industry ,Embedded system ,Metering mode ,Electricity ,Routing (electronic design automation) ,business ,Wireless sensor network ,Data type ,Automatic meter reading ,Data modeling - Abstract
In this paper we present a remote utility metering system based on ZigBee used to collect data from residential electricity, gas and water meters. In order to reduce the use of network resources and to evaluate the sensor network performance, a simulation study was carried out with two types of data related to electronic and non electronic metering devices. The study was conducted using a simulator which was developed using the OMNeT++ platform. The results show that for some application scenarios ZigBee is a valid technological solution to the remote utility metering problem.
38. Wi-Fi intruder detection: An experimental approach
- Author
-
Fernandes, R., Joao Matos, Varum, T., and Pinho, P.
39. Development of a communication system following 802.11P and wave standards
- Author
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Carona, D., Prata, R., Serrador, A., Abreu, R., Joao Matos, and Cunha, J.
40. Design and characterization of a 20 Gbit/s clock recovery circuit
- Author
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Monteiro, Paulo M., Joao Matos, Gameiro, A., and Rocha, J. F.
41. In-house development of 17 GHz antennas: Potentials and difficulties
- Author
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MICHAEL RODRIGUES DUARTE, Varum, T., Joao Matos, and Pedro Pinho
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