1. Phylogenetic affiliation and determination of bioactive compounds of bacterial population associated with organs of mud crab, Scylla olivacea
- Author
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Zothanpuia, Ajit Kumar Passari, Bhim Singh, Nachimuthu Senthil Kumar, Joanne Zote, Chandra Nayaka Siddaiah, Elsayed Fathi Abd_Allah, Jahangir Ahmad Malik, Abeer Hashem, and Abdulaziz A. Alqarawi
- Subjects
0301 basic medicine ,Phylogenetic tree ,business.industry ,030106 microbiology ,Cytochrome P450 ,Zoology ,Biology ,16S ribosomal RNA ,Antimicrobial ,03 medical and health sciences ,lcsh:Biology (General) ,Aquaculture ,Polyketide synthase ,biology.protein ,Carapace ,General Agricultural and Biological Sciences ,business ,lcsh:QH301-705.5 ,Gene - Abstract
Mud crab belongs to the genus Scylla is an economically valuable and preferred species for costal aquaculture in Asian countries, including India. In recent years, there has been a tremendous expansion of Scylla farming, which has led to increasing research on its habit and habitats. However, there has been no study undertaken to understand the role of the bacterial population associated with the different organs of the mud crab, Scylla olivacea. In total, 43 isolates were recovered from four selected parts of the crab (carapace, n = 18; abdomen n = 11; leg, n = 8; and hand, n = 6), and the 16S rRNA gene was used to identify the bacterial isolates. The antimicrobial potential along with the detection of modular polyketide synthase (PKSI), cytochrome P450 hydroxylase (CYP) and non-ribosomal peptide synthetase (NRPS) gene clusters were investigated to show a relationship among the biosynthetic genes with their useful aspects. Additionally, the potential three strains (BPS_CRB12, BPS_CRB14 and BPS_CRB41), which showed significant antimicrobial activities, also showed the presence of twenty volatile compounds (VOCs) using GC–MS analysis. We conclude that the strain Aneurinibacillus aneurinilyticus BPS_CRB41 could be source for the production of bioactive compounds. Keywords: Scylla olivacea, 16S rRNA gene, Modular polyketide synthase (PKSI), Cytochrome P450 hydroxylase(CYP), Non-ribosomal peptide synthetase (NRPS)
- Published
- 2018