27 results on '"Ingrid Eftedal"'
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2. Editorial: Survival in Extreme Environments – Adaptation or Decompensation?, Volume II
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Torkjel Tveita, Ingrid Eftedal, and Sanjoy Deb
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Physiology ,Physiology (medical) - Published
- 2022
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3. Editorial: Survival in Extreme Environments – Adaptation or Decompensation?, Volume I
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Torkjel Tveita, Ingrid Eftedal, and Sanjoy Deb
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diving ,extraction work ,hunting ,Physiology ,Physiology (medical) ,QP1-981 ,fishing ,farming - Published
- 2022
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4. A Work Environment Under Pressure: Psychosocial Job Demands and Resources Among Saturation Divers
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Siri Romsbotn, Ingrid Eftedal, and Jonas Rennemo Vaag
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Diving ,Public Health, Environmental and Occupational Health ,Samfunnsvitenskap: 200::Psykologi: 260::Sosial- og arbeidspsykologi: 263 [VDP] ,Workplace - Abstract
Saturation divers work and live under high physiological and social demands for weeks on end. Even though physiological research has contributed insights to the work conditions of saturation divers, research on the qualities of the divers' psychosocial work environment is lacking. This study aimed to explore which job demands and resources are viewed as characteristic among saturation divers working within an isolated and confined environment. Based on data from 6 in-depth semi-structured interviews, template analysis was applied to map unique characteristics. By using the theoretical framework of the job demands-resources model, we found that the work environment in saturation diving was characterized by shifting demands and big contrasts, requiring adaptability in each individual diver. One major demand described by the informants was an unpredictable future, somewhat due to the changes in the oil and gas industry. Another important demand was the conflict between family and work/leisure when committing to work for extended periods in isolated environments. The monotony that characterizes the work environment is a challenge that must be managed. High wages, periods of leisure, and a prestigious job provide external motivation, while personal resources such as mental endurance and flexibility, a willingness to learn, and keeping up small personal routines, may benefit the divers' mental health. This is also affected by the quality of team climate—with features such as being sociable and considerate, having a dark sense of humor and having trust in one another.
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- 2021
5. Continuous Hemodynamic Monitoring in an Intact Rat Model of Simulated Diving
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Svein E. Gaustad, Timofei V. Kondratiev, Ingrid Eftedal, and Torkjel Tveita
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Cardiac function curve ,diving ,Cardiac output ,medicine.medical_specialty ,Mean arterial pressure ,decompression ,Decompression ,Physiology ,Hemodynamics ,rattus norvegicus ,030204 cardiovascular system & hematology ,lcsh:Physiology ,Contractility ,03 medical and health sciences ,0302 clinical medicine ,Afterload ,hyperbaric ,Physiology (medical) ,Internal medicine ,Medicine ,lcsh:QP1-981 ,business.industry ,VDP::Medisinske Fag: 700::Basale medisinske, odontologiske og veterinærmedisinske fag: 710 ,Stroke volume ,Brief Research Report ,VDP::Medical disciplines: 700::Basic medical, dental and veterinary science disciplines: 710 ,Cardiology ,cardiac function ,business ,left ventricular ,human activities ,030217 neurology & neurosurgery - Abstract
Cardiovascular risk is elevated in divers, but detailed information of cardiac function during diving is missing. The aim of this study was to apply an intact rat model with continuous monitoring of cardiac left ventricular (LV) function in a simulated diving experiment. Thirteen rats were inserted with a LV pressure–volume catheter and a pressure transducer in the femoral artery to measure hemodynamic variables, and randomly assigned to diving (n = 9) and control (n = 4) groups. The diving group was compressed to 600 kPa in air, maintained at pressure for 45 min (bottom phase), and decompressed to surface at 50 kPa/min. Data was collected before, during, and up to 60 min after exposure in the diving group, and at similar times in non-diving controls. During the bottom phase, stroke volume (SV) (−29%) and cardiac output (−30%) decreased, whereas LV end-systolic volume (+13%), mean arterial pressure (MAP) (+29%), and total peripheral resistance (TPR) (+72%) increased. There were no changes in LV contractility, stroke work, or diastolic function. All hemodynamic variables returned to baseline values within 60 min after diving. In conclusion, our simulated dive experiment to 600 kPa increased MAP and TPR to levels which caused a substantial reduction in SV and LV volume output. The increase in cardiac afterload demonstrated to take place during a dive is well tolerated by the healthy heart in our model, whereas in a failing heart this abrupt change in afterload may lead to acute cardiac decompensation. Copyright © 2020 Gaustad, Kondratiev, Eftedal and Tveita. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY)
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- 2019
6. Commercial Divers’ Subjective Evaluation of Saturation
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Jean Pierre Imbert, Costantino Balestra, Fatima Zohra Kiboub, Øyvind Loennechen, Ingrid Eftedal, Physiotherapy, Human Physiology and Anatomy, and Anatomical Research and Clinical Studies
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musculoskeletal diseases ,Saturation diving ,Decompression ,lcsh:BF1-990 ,Hygiène et médecine sportives ,relative hypoxia ,long term health effects ,050105 experimental psychology ,03 medical and health sciences ,0302 clinical medicine ,diving fatigue ,medicine ,Psychology ,0501 psychology and cognitive sciences ,saturation diving ,General Psychology ,Original Research ,Medisinske Fag: 700::Idrettsmedisinske fag: 850 [VDP] ,05 social sciences ,Médecine pathologie humaine ,Education physique ,Sciences bio-médicales et agricoles ,hemoglobin ,lcsh:Psychology ,Anesthesia ,Médecine de l'environnement ,Hygiène et médecine du travail ,Samfunnsvitenskap: 200::Psykologi: 260 [VDP] ,Headaches ,medicine.symptom ,Saturation (chemistry) ,headache ,human activities ,030217 neurology & neurosurgery - Abstract
Commercial saturation diving involves divers living and working in an enclosed atmosphere with elevated partial pressure of oxygen (ppO2) for weeks. The divers must acclimatize to these conditions during compression, and for up to 28 days until decompression is completed. During decompression, the ppO2 and ambient pressure are gradually decreased; then the divers must acclimatize again to breathing normal air in atmospheric pressure when they arrive at surface. We investigated 51 saturation divers' subjective evaluation of the saturation and post-decompression phase via questionnaires and individual interviews. The questions were about decompression headaches and fatigue; and time before recovering to a pre-saturation state. Twenty-two (44%) of the divers who responded declared having headaches; near surface (44%) or after surfacing (56%). 71% reported post-saturation fatigue after their last saturation, 82% of them described it as typical and systematic after each saturation. Recovery was reported to normally take from 1 to 10 days. The fatigue and headaches observed are compatible with divers' acclimatization to the changes in ppO2 levels during saturation and decompression. They appear to be reversible post- decompression., info:eu-repo/semantics/published
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- 2019
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7. Endothelial Function And Cardiovascular Stress Markers After A Single Dive In Aging Rats (ApoE Knockout Rats)
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Vladimir V. Matchkov, Ingrid Eftedal, Micahel Pedersen, and Simin Berenji Ardestani
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Apolipoprotein E ,medicine.medical_specialty ,Knockout rat ,business.industry ,Biochemistry ,Endocrinology ,Internal medicine ,Genetics ,medicine ,business ,Molecular Biology ,Cardiovascular stress ,Function (biology) ,Biotechnology - Published
- 2018
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8. Car wrecks and caution: a lament on getting the facts straight in scientific reporting − I. Eftedal
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Ingrid, Eftedal
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Research Report ,Norway ,Communication ,Diving ,Accidents, Traffic ,Humans ,Decompression Sickness ,Automobiles - Published
- 2017
9. Immune and inflammatory responses to freediving calculated from leukocyte gene expression profiles
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Arnar Flatberg, Ingrid Eftedal, Zeljko Dujic, and Ivan Drvis
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0301 basic medicine ,Adult ,Male ,apnea ,hypoxia ,inflammation ,leukocyte ,transcriptome deconvolution ,Physiology ,Diving ,Inflammation ,Biology ,03 medical and health sciences ,chemistry.chemical_compound ,Young Adult ,0302 clinical medicine ,Immune system ,Gene expression ,Genetics ,medicine ,Leukocytes ,Humans ,Least-Squares Analysis ,Oligonucleotide Array Sequence Analysis ,Gene Expression Profiling ,Apnea ,Hypoxia (medical) ,Middle Aged ,030104 developmental biology ,chemistry ,Gene Expression Regulation ,Carbon dioxide ,Immunology ,Female ,medicine.symptom ,Hypercapnia ,030215 immunology ,Signal Transduction - Abstract
Freedivers hold their breath while diving, causing blood oxygen levels to decrease (hypoxia) while carbon dioxide increases (hypercapnia). Whereas blood gas changes are presumably involved in the progression of respiratory diseases, less is known about their effect on healthy individuals. Here we have used gene expression profiling to analyze elite athletes' immune and inflammatory responses to freediving. Blood was collected before and 1 and 3 h after a series of maximal dynamic and static freediving apneas in a pool, and peripheral blood gene expression was mapped on genome-wide microarrays. Fractions of phenotypically distinct immune cells were computed by deconvolution of the gene expression data using Cibersort software. Changes in gene activity and associated biological pathways were determined using R and GeneGo software. The results indicated a temporary increase of neutrophil granulocytes, and a decrease of cytotoxic lymphocytes ; i.e., CD8+ T cells and resting NK cells. Biological pathway associations indicated possible protective reactions: genes involved in anti- inflammatory responses to proresolving lipid mediators were upregulated, whereas central factors involved in granule-mediated lymphocyte cytotoxicity were downregulated. While it remains unresolved whether freediving alters the immune system's defensive function, these results provide new insight into leukocyte responses and the protection of homeostasis in healthy athletes. freedivers dive on a single breath, and their performance hinges on their ability to suppress breathing voluntarily while floating face down (static apnea) or swimming horizontally (dynamic apnea) or vertically (constant weight apnea, free immersion apnea, no-limits apnea). To improve their performance, they use adaptive techniques that increase their lung capacity, reduce metabolic rates, and improve their tolerance to apnea, i.e., to hypoxia and hypercapnia (22). Freediving performance is often further enhanced by hyperventilation to reduce carbon dioxide levels prior to the dive and by glossopharyngeal insufflation (“lung packing”) for extra volumes of air or breathing pure oxygen to add to the body's oxygen reserves (19). During dives, an initial easy- going phase is followed by a physiological breaking point after which the urge to breath causes a struggle phase with displays of involuntary movements of the respiratory muscles that are thought to increase cardiac output (12, 31). This effect restores oxygen supply to the vital organs, such as the brain and the heart. Still, hypoxia can be severe at the end of a dive ; oxygen levels that are considered pathological in untrained individuals have been measured in freediving athletes' first expired breaths and arterial blood after diving (21, 30, 52). Adaption to hypercapnia also permits freedivers to prolong their breath holding, and the level of carbon dioxide first expired after breaking off a dive is considerably elevated (30). In light of an emerging understanding of the role of the immune system and inflammatory signaling in maintaining tissue and organ homeostasis (24), it is of interest to understand the responses of the white blood cells, leukocytes, to physiologically stressful changes in blood gas during voluntary apnea. The possibility of genome-wide measurements of gene expression on microarrays has expedited research into the molecular basis of biological states and responses. For studies of the immune system, peripheral blood is an obvious choice for gene expression analysis (5). Blood is a highly heterogeneous tissue. Of its formed elements, the erythrocytes, platelets, and leukocytes, only leukocytes have chromosome- containing nuclei ; genome-wide gene expression in peripheral blood therefore ideally represent the biological state of its leukocytes. However, the interpretation of gene expression data from blood is complicated by the heterogeneity of the leukocyte compartment, which consists of a number of phenotypically different cell types. The main leukocytes, the neutrophils, eosinophils, basophils, lymphocytes, and monocytes, are further divided into subsets of cells with different function in the immune system. Each leukocyte subset derives its phenotype from the particular set of genes it expresses, and the cell types are present in blood in variable amounts (51). In practical terms, this means that a measured change in the abundance of any transcript in blood does not immediately tell us whether the activity of its gene has changed, or whether there has been a change in the relative abundance of cells in which this gene is expressed (39). Traditional microarray analysis does not take sample composition into account, but recent papers have presented methods where transcriptome contributions from phenotypically distinct cell types are separated by signal deconvolution on the basis of cell type- specific gene expression (1, 25, 38). Deconvolution of microarray signals extracts cell type-specific information from system-wide data and has been found to corroborate results from flow cytometric phenotyping. Also, since deconvolution is done after the genome-wide data are collected, it eliminates the need for fractioning of samples and facilitates unbiased detection of cell types for which the patterns of gene expression are known. In this study we examine the effects of freediving on cells of the immune system. Genome-wide cDNA microarrays were used to analyze the peripheral blood transcriptome of elite freedivers who performed a series of dynamic and static apnea dives in a pool with their respiratory tract immersed. The proportions of major immune cell types in the participant's blood before and after dives were calculated by cell type-specific deconvolution of the microarray data. Changes in biological pathways were predicted on basis of differentially expressed genes.
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- 2016
10. The world as it might (possibly) be. Correlation of wavelength and amplitude of visual peripheral stimuli with decompression sickness in 'teckies': a triple-blinded, power-analysed study
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Arne, Sieber, Lasley, Blogg, Ingrid, Eftedal, and Andreas, Møllerløkken
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Adult ,Male ,Diving ,Masks ,Color ,Decompression Sickness ,Young Adult ,Surveys and Questionnaires ,Humans ,Female ,Eye Protective Devices ,Photic Stimulation ,Vision, Ocular ,Wit and Humor as Topic - Published
- 2016
11. Early genetic responses in rat vascular tissue after simulated diving
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Arve Jørgensen, Alf O. Brubakk, Ingrid Eftedal, Arnar Flatberg, and Ragnhild Røsbjørgen
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Reverse Transcriptase Polymerase Chain Reaction ,Physiology ,Diving ,Gene Expression Profiling ,Oxygen metabolism ,Hydrogen-Ion Concentration ,Biology ,Hypoxia-Inducible Factor 1, alpha Subunit ,Rats ,Oxygen ,Rats, Sprague-Dawley ,Sprague dawley ,Gene Expression Regulation ,Plasminogen Activator Inhibitor 1 ,Genetics ,Animals ,Blood Vessels ,Cluster Analysis ,Female ,RNA, Messenger ,Vascular function ,Diving physiology ,Neuroscience ,Aorta ,Vascular tissue - Abstract
Diving causes a transient reduction of vascular function, but the mechanisms behind this are largely unknown. The aim of this study was therefore to analyze genetic reactions that may be involved in acute changes of vascular function in divers. Rats were exposed to 709 kPa of hyperbaric air (149 kPa Po2) for 50 min followed by postdive monitoring of vascular bubble formation and full genome microarray analysis of the aorta from diving rats ( n = 8) and unexposed controls ( n = 9). Upregulation of 23 genes was observed 1 h after simulated diving. The differential gene expression was characteristic of cellular responses to oxidative stress, with functions of upregulated genes including activation and fine-tuning of stress-responsive transcription, cytokine/cytokine receptor signaling, molecular chaperoning, and coagulation. By qRT-PCR, we verified increased transcription of neuron-derived orphan receptor-1 ( Nr4a3), plasminogen activator inhibitor 1 ( Serpine1), cytokine TWEAK receptor FN14 ( Tnfrsf12a), transcription factor class E basic helix-loop-helix protein 40 ( Bhlhe40), and adrenomedullin ( Adm). Hypoxia-inducible transcription factor HIF1 subunit HIF1-α was stabilized in the aorta 1 h after diving, and after 4 h there was a fivefold increase in total protein levels of the procoagulant plasminogen activator inhibitor 1 (PAI1) in blood plasma from diving rats. The study did not have sufficient power for individual assessment of effects of hyperoxia and decompression-induced bubbles on postdive gene expression. However, differential gene expression in rats without venous bubbles was similar to that of all the diving rats, indicating that elevated Po2 instigated the observed genetic reactions.
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- 2012
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12. Immunity under pressure: Determining immune and inflammatory responses to the environments in diving
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Ingrid Eftedal
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Immune system ,Immunity ,business.industry ,Immunology ,Medicine ,General Medicine ,General Agricultural and Biological Sciences ,business ,General Biochemistry, Genetics and Molecular Biology - Published
- 2018
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13. The aging diver: endothelial biochemistry and its potential implications for cardiovascular health
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Simin, Berenji Ardestani, Peter, Buzzacott, and Ingrid, Eftedal
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Adult ,Risk ,Aging ,Acclimatization ,Diving ,Age Factors ,Middle Aged ,Atherosclerosis ,Decompression Sickness ,Nitric Oxide ,Rats ,Sex Factors ,Cardiovascular Diseases ,Cause of Death ,Animals ,Humans ,Endothelium, Vascular ,Rabbits ,Aged - Abstract
Divers are exposed to circulatory stress that directly affects the endothelial lining of blood vessels, and even asymptomatic dives are associated with inflammatory responses, microparticle release and endothelial dysfunction. As humans age, there is a relative increase in the risk of cardiovascular disease, attributed in part to declining endothelial function. Whether extensive diving in the older diver increases the risk of disease as a result of accumulated circulatory stress or provides protection through processes of acclimatization remains an open question. We provide a brief review of current knowledge about the separate effects of diving and aging on the vascular endothelium in humans and rodents, and discuss the available data on their combined effects. The aim is to elucidate possible outcomes of the interplay between exogenous and endogenous stress factors for endothelial function and to question potential implications for cardiovascular health in the aging diver.
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- 2015
14. Diving into the rat plasma proteome to get to the bottom of decompression sickness
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Ingrid Eftedal
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Proteomics ,0301 basic medicine ,Pressure reduction ,Decompression ,Clinical Biochemistry ,Signs and symptoms ,030204 cardiovascular system & hematology ,Biology ,Decompression Sickness ,medicine.disease ,Bioinformatics ,Rats ,Decompression sickness ,03 medical and health sciences ,Transthyretin ,030104 developmental biology ,0302 clinical medicine ,Anesthesia ,Proteome ,medicine ,biology.protein ,Animals ,Diagnostic biomarker - Abstract
Decompression sickness (DCS) is the collective term for an array of signs and symptoms triggered by ambient pressure reduction. It is of particular concern to divers as they decompress on ascend from depth to sea surface, but despite a long history of studies the determinants of DCS risk are incompletely understood and there are no validated biomarkers. In this issue of Proteomics Clinical Applications, Lautridou et al. [8] report on their search for DCS biomarkers in rats exposed to simulated diving. By comparing the plasma proteomes from animals showing neurological symptoms to those emerging from dives unaffected, they identified several high-abundance proteins not previously associated with DCS. The most significant finding was a near depletion of thyroxine- and vitamin A transporter transthyretin in symptomatic rats. In addition to their potential role as diagnostic biomarkers, the proteins identified in Lautridou's study may offer new pieces in the yet incomplete puzzle of DCS etiology.
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- 2016
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15. Eccentric exercise 48 h prior to simulated diving has no effect on vascular bubble formation in rats
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Arve Jørgensen, Marianne B Havnes, Anna Madeleine Ekdahl, and Ingrid Eftedal
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medicine.medical_specialty ,Sports medicine ,Physiology ,Diving ,education ,Physical Exertion ,Inflammation ,Physical exercise ,Decompression sickness ,Rats, Sprague-Dawley ,Physiology (medical) ,Internal medicine ,Medicine ,Animals ,Orthopedics and Sports Medicine ,Muscle, Skeletal ,Mechanism (biology) ,business.industry ,Public Health, Environmental and Occupational Health ,General Medicine ,Muscle injury ,medicine.disease ,Decompression Sickness ,Surgery ,Rats ,Eccentric exercise ,Cardiology ,Female ,Liquid bubble ,Gases ,medicine.symptom ,business ,human activities - Abstract
PURPOSE: Decompression sickness (DCS) caused by vascular bubble formation is a major risk when diving. Prior studies have shown that physical exercise has a significant impact in both reducing and increasing bubble formation. There is limited knowledge about the mechanisms, but there are indications that exercise-induced muscle injury prior to diving may cause increased bubble formation. The purpose of this study was to investigate the role of exercise-induced muscle injury as a possible mechanism of bubble formation during diving. METHODS: Muscle injury was induced by exposing female Sprague-Dawley rats (n = 30) to a single bout of eccentric exercise, 100 min intermittent, downhill (-16°) treadmill running. Forty-eight hours later, the animals were exposed to a 50-min simulated saturation dive (709 kPa) in a pressure chamber, when the degree of muscle injury and inflammation would be the most pronounced. Bubble formation after the dive was observed by ultrasonic imaging for 4 h. RESULTS: No difference in bubble loads was found between the groups at any time despite evident muscle injury. Maximum bubble loads (bubbles cm-2 heart cycle-1) were not different, exercise: 1.6 ± 3.5 SD vs control: 2.2 ± 4.1 SD, P = 0.90, n = 15 in each group. CONCLUSIONS: Eccentric exercise performed 48 h prior to diving causes skeletal muscle injury but does not increase the amount of vascular bubbles in rats. The prevailing recommendation is that physical activity prior to diving is a risk factor of DCS. However, present and previous studies implicate that pre-dive physical activity does not increase the DCS risk. © Springer-Verlag Berlin Heidelberg 2014. This is the authors' accepted and refereed manuscript to the article
- Published
- 2014
16. Single intragenic microsatellite preimplantation genetic diagnosis for cystic fibrosis provides positive allele identification of all CFTR genotypes for informative couples
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Ingrid Eftedal, H. Bendtsen, S. Ziebe, A.N. Andersen, and M. Schwartz
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Male ,Blastomeres ,Embryology ,Cystic Fibrosis ,Genotype ,Cystic Fibrosis Transmembrane Conductance Regulator ,Biology ,Preimplantation genetic diagnosis ,Compound heterozygosity ,Polymerase Chain Reaction ,Pregnancy ,Multiplex polymerase chain reaction ,Genetics ,Humans ,Allele ,Molecular Biology ,Alleles ,Preimplantation Diagnosis ,Obstetrics and Gynecology ,DNA ,Cell Biology ,Molecular biology ,Cystic fibrosis transmembrane conductance regulator ,Pedigree ,Blastocyst ,Treatment Outcome ,Reproductive Medicine ,Genetic marker ,biology.protein ,Microsatellite ,Female ,Microsatellite Repeats ,Developmental Biology - Abstract
This study is part of a strategy aimed at using fluorescent polymerase chain reaction (PCR) on informative genetic microsatellite markers as a diagnostic tool in preimplantation genetic diagnosis (PGD) of severe monogenic disease. Two couples, both of whom had previously had children who were compound heterozygote for severe cystic fibrosis mutations, were offered PGD using fluorescent PCR of the highly polymorphic cystic fibrosis transmembrane conductance regulator (CFTR) intragenic microsatellite marker IVS17bTA. Cleavage-stage embryo biopsy followed by PCR resulted in transfer of one unaffected carrier embryo for each couple. This approach eliminates the need for single cell multiplex PCR strategies to detect CF compound heterozygotes. It also provides a control of chromosome 7 ploidy in the blastomeres and a selection against allele dropout by positive detection of each CFTR copy of all genotypes in preimplantation embryos from genetically informative families.
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- 2001
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17. Prior eccentric exercise modifies diving‐induced inflammatory gene expression in rats
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Ingrid Eftedal, Arnar Flatberg, and Arve Jørgensen
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medicine.medical_specialty ,Endocrinology ,business.industry ,Eccentric exercise ,Internal medicine ,Genetics ,Medicine ,business ,Molecular Biology ,Biochemistry ,Inflammatory genes ,Biotechnology - Published
- 2012
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18. Low Incorporation of dUMP by Some Thermostable DNA Polymerases May Limit Their Use in PCR Amplifications
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Ingrun Alseth, Gunnar Volden, Geir Slupphaug, Ingrid Eftedal, and H.E. Krokan
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Hot Temperature ,DNA polymerase ,DNA polymerase II ,Molecular Sequence Data ,Biophysics ,DNA-Directed DNA Polymerase ,Polymerase Chain Reaction ,Biochemistry ,Substrate Specificity ,law.invention ,chemistry.chemical_compound ,law ,Enzyme Stability ,Thymine Nucleotides ,Molecular Biology ,Polymerase chain reaction ,Bacteria ,Base Sequence ,Thermus aquaticus ,biology ,Cell Biology ,biology.organism_classification ,Molecular biology ,chemistry ,biology.protein ,Pyrococcus furiosus ,Proofreading ,Deoxyuracil Nucleotides ,Uracil nucleotide ,DNA - Abstract
Incorporation of dUMP instead of dTMP is frequently used to control carryover contamination during PCR amplifications. We have tested four thermostable DNA polymerases for their ability to utilize dUTP as a substrate in PCR. Amplification of products in the presence of dUTP instead of dTTP was good with Thermus aquaticus DNA polymerase but highly inefficient with three other thermostable DNA polymerases. The latter was due to: (a) lower incorporation of dUMP relative to dTMP, (b) increased proofreading toward dUMP in DNA, (c) relative termination at dUMP residues as verified by sequencing reactions in the presence of dUTP, (d) thermostable dUTPase activity in the commercial enzyme preparation. The last point only applies to Pyrococcus furiosus DNA polymerase. This study demonstrates that various thermostable DNA polymerases utilize dTTP and dUTP with highly different efficiencies and thus the choice of DNA polymerase may be critical for amplification of DNA.
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- 1993
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19. Consensus sequences for good and poor removal of uracil from double stranded DNA by uracil-DNA glycosylase
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Per Henrik Guddal, Gunnar Volden, Ingrid Eftedal, Geir Slupphaug, and Hans E. Krokan
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DNA Repair ,Base pair ,DNA repair ,Molecular Sequence Data ,Biology ,DNA Glycosylases ,Substrate Specificity ,chemistry.chemical_compound ,Consensus Sequence ,Escherichia coli ,Genetics ,Consensus sequence ,Animals ,Uracil ,Uracil-DNA Glycosidase ,N-Glycosyl Hydrolases ,Base Sequence ,Oligonucleotide ,DNA ,Molecular biology ,chemistry ,Biochemistry ,DNA glycosylase ,Uracil-DNA glycosylase ,Cattle - Abstract
We have purified uracil DNA-glycosylase (UDG) from calf thymus 32,000-fold and studied its biochemical properties, including sequence specificity. The enzyme is apparently closely related to human UDG, since it was recognised by a polyclonal antibody directed towards human UDG. SDS-PAGE and western analysis indicate an apparent M(r) = 27,500. Bovine UDG has a 1.7-fold preference for single stranded over double stranded DNA as a substrate. Sequence specificity for uracil removal from dsDNA was examined for bovine and Escherichia coli UDG, using DNA containing less than one dUMP residue per 100 nucleotides and synthetic oligonucleotides containing one dUMP residue. Comparative studies involving about 40 uracil sites indicated similar specificities for both UDGs. We found more than a 10-fold difference in rates of uracil removal between different sequences. 5'-G/CUT-3' and 5'-G/CUG/C-3' were consensus sequences for poor repair whereas 5'-A/TUAA/T-3' was a consensus for good repair. Sequence specificity was verified in double stranded oligonucleotides, but not in single stranded ones, suggesting that the structure of the double stranded DNA helix has influence on sequence specificity. Rate of uracil removal appeared to be slightly faster from U:A base pairs as compared to U:G mis-matches. The results indicate that sequence specific repair may be a determinant to be considered in mutagenesis.
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- 1993
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20. Excision of Uracil from Double-Stranded DNA by Uracil-DNA Glycosylase Is Sequence Specific
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Hans E. Krokan, Ingrid Eftedal, and Gunnar Volden
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DNA Repair ,Molecular Sequence Data ,Biology ,General Biochemistry, Genetics and Molecular Biology ,DNA Glycosylases ,chemistry.chemical_compound ,History and Philosophy of Science ,Escherichia coli ,Animals ,Humans ,Uracil ,Uracil-DNA Glycosidase ,N-Glycosyl Hydrolases ,Sequence (medicine) ,Uracil in DNA ,Base Sequence ,General Neuroscience ,DNA ,Molecular biology ,chemistry ,Biochemistry ,DNA glycosylase ,Uracil-DNA glycosylase ,Cattle ,Double stranded - Published
- 1994
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21. [Embryonic stem cells and therapeutic cloning]
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Sunde A and Ingrid Eftedal
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Adult ,Blastocyst ,Fetal Tissue Transplantation ,Cloning, Organism ,Stem Cells ,Hematopoietic Stem Cell Transplantation ,Animals ,Humans ,Cell Differentiation ,Ethics, Medical ,Cell Separation ,Hematopoietic Stem Cells ,Clone Cells - Abstract
Increased interest in the therapeutic use of human stem cells has emerged following significant progress in ongoing research. The cloning of a sheep, the isolation of human embryonic stem cells, and the discovery that adult stem cells may be reprogrammed taken together give substance to hopes that novel principles of treatment may be developed for a variety of serious conditions. Embryonic stem cells are derived from pre-embryos at the blastocyst stage and may give rise to all bodily tissues and cells. Animal models have demonstrated that embryonic stem cells when transplanted into adult hosts may differentiate and develop into cells and tissues applicable for treatment of a variety of conditions, including Parkinson's disease, multiple sclerosis, spinal injuries, cardiac stroke and cancer. Transplanted embryonic stem cells are exposed to immune reactions similar to those acting on organ transplants, hence immunosuppression of the recipient is generally required. It is, however, possible to obtain embryonic stem cells that are genetically identical to the patient's own cells by means of therapeutic cloning techniques. The nucleus from a somatic cell is transferred into an egg after removal of the egg's own genetic material. Under specific condition the egg will use genetic information from the somatic cell in organising the formation of a blastocyst which in turn generates embryonic stem cells. These cells have a genetic composition identical to that of the patient and are suitable for stem cell therapy.
- Published
- 2001
22. Effects of hyperbaric oxygen preconditioning on cardiac stress markers after simulated diving
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Arve Jørgensen, Alf O. Brubakk, Philip P. Foster, and Ingrid Eftedal
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diving ,Cardioprotection ,Physiology ,NATRIURETIC PEPTIDE PRECURSOR B ,business.industry ,decompression illness ,Ischemia ,chemistry.chemical_element ,medicine.disease ,Oxygen ,hyperbaric oxygen preconditioning ,Hyperbaric oxygen ,Troponin complex ,chemistry ,Physiology (medical) ,Heart failure ,Anesthesia ,medicine ,gas embolism ,business ,human activities ,Original Research ,Ambient pressure - Abstract
Hyperbaric oxygen preconditioning (HBO-PC) can protect the heart from injury during subsequent ischemia. The presence of high loads of venous gas emboli (VGE) induced by a rapid ambient pressure reduction on ascent from diving may cause ischemia and acute heart failure. The aim of this study was to investigate the effect of diving-induced VGE formation on cardiac stress marker levels and the cardioprotective effect of HBO-PC. To induce high loads of VGE, 63 female Sprague-Dawley rats were subjected to a rapid ambient pressure reduction from a simulated saturation dive (50 min at 709 kPa) in a pressure chamber. VGE loads were measured for 60 min in anesthetized animals by the use of ultrasonography. The animals were divided into five groups. Three groups were exposed to either diving or to HBO-PC (100% oxygen, 38 min at 303 kPa) with a 45 or 180 min interval between HBO-PC and diving. Two additional groups were used as baseline controls for the measurements; one group was exposed to equal handling except for HBO-PC and diving, and the other group was completely unexposed. Diving caused high loads of VGE, as well as elevated levels of the cardiac stress markers, cardiac troponin T (cTnT), natriuretic peptide precursor B (Nppb), and αB-crystallin, in blood and cardiac tissue. There were strong positive correlations between VGE loads and stress marker levels after diving, and HBO-PC appeared to have a cardioprotective effect, as indicated by the lower levels of stress marker expression after diving-induced VGE formation. KEYWORDS: Cardioprotection, decompression illness, diving, gas embolism, hyperbaric oxygen preconditioning (c) 2013 The Authors. Physiological Reports published by Wiley Periodicals, Inc. on behalf of the American Physiological Society and The Physiological Society. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
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- 2013
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23. Human uracil-DNA glycosylase gene: sequence organization, methylation pattern, and mapping to chromosome 12q23-q24.1
- Author
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Hans E. Krokan, Frank Skorpen, Henning Lund, Ingrid Eftedal, Kirsti Kvaløy, and Terje Haug
- Subjects
Genetics ,Chromosomes, Human, Pair 12 ,Base Sequence ,Retroposon ,Molecular Sequence Data ,Intron ,Chromosome Mapping ,Promoter ,Methylation ,Biology ,DNA Methylation ,Molecular biology ,DNA Glycosylases ,CpG site ,DNA glycosylase ,Uracil-DNA glycosylase ,Humans ,Amino Acid Sequence ,Cloning, Molecular ,Uracil-DNA Glycosidase ,Gene ,N-Glycosyl Hydrolases - Abstract
The human uracil-DNA glycosylase gene (UNG) spans approximately 13.5 kb including the promoter. UNG comprises 6 exons and 5 introns and was assigned to chromosome 12q23-q24.1 by radiation hybrid mapping. UNG exhibits typical features of housekeeping genes, including a 5' CpG island of 1.2 kb and a very GC-rich TATA-less promoter containing a number of elements involved in constitutive expression and cell cycle regulation. A smaller CpG island is located just downstream of the gene. Within the 15-kb sequence we identified 16 Alu retroposons, 2 of which contain putative competent RNA polymerase III promoters, 3 copies of medium reiteration frequency repeats, and 1 copy of a mammalian-wide interspersed repetitive element, as well as a 300-bp TA-dinucleotide repeat. In vitro methylation of the UNG promoter strongly reduced promoter activity, but methylation may not be involved in regulation of UNG in vivo since a narrow region of the 5' CpG island comprising the putative transcription factor binding region appears to be invariably methylation-free.
- Published
- 1996
24. Pseudogenes for the human uracil-DNA glycosylase on chromosomes 14 and 16
- Author
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Terje Haug, Ingrid Eftedal, Henning Lund, and Hans E. Krokan
- Subjects
DNA, Complementary ,Pseudogene ,Molecular Sequence Data ,Restriction Mapping ,Biophysics ,Alu element ,Biology ,Biochemistry ,DNA Glycosylases ,Time ,Restriction map ,Complementary DNA ,Sequence Homology, Nucleic Acid ,Humans ,Genomic library ,Cloning, Molecular ,Uracil-DNA Glycosidase ,Molecular Biology ,Gene ,N-Glycosyl Hydrolases ,Gene Library ,Genetics ,Chromosomes, Human, Pair 14 ,Base Sequence ,Chromosome Mapping ,Genetic Variation ,Cell Biology ,DNA glycosylase ,Uracil-DNA glycosylase ,Chromosomes, Human, Pair 16 ,Pseudogenes - Abstract
Two clones containing nonfunctional pseudogenes for the human uracil-DNA glycosylase gene have been isolated. The sequences of the two clones that are homologous to the UNG cDNA span 670 and 580 bp, respectively. In the longest of these, a full length Sx type Alu sequence interrupts the homologous sequence. Chromosomal mapping locates the clones to chromosomes 16 and 14. Comparison of the pseudogene sequences to the cDNA sequence indicates that the pseudogenes diverged from the functional gene approximately 31 and 22 million years ago, which is before the point in evolution when great apes and hominides separated.
- Published
- 1996
25. Oxidation of thymine to 5-formyluracil in DNA: mechanisms of formation, structural implications, and base excision by human cell free extracts
- Author
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Ingrid Eftedal, Svein Bjelland, Lars Eide, Roland H. Stote, Erling Seeberg, Gunnar Volden, and Rune W. Time
- Subjects
Cell Extracts ,Vitamin K ,DNA Repair ,Stereochemistry ,Ultraviolet Rays ,Biochemistry ,DNA Glycosylases ,Pentoxyl ,chemistry.chemical_compound ,Humans ,A-DNA ,Hydroxymethyl ,Uracil ,N-Glycosyl Hydrolases ,Chromatography, High Pressure Liquid ,Base Composition ,Photolysis ,Molecular Structure ,Substrate (chemistry) ,DNA ,Thymine ,Kinetics ,chemistry ,DNA glycosylase ,Mutagenesis ,Leukocytes, Mononuclear ,Thymidine ,Oxidation-Reduction - Abstract
Oxidative agents produce several different types of base modifications in DNA, and only a few of these have been properly characterized with respect to mechanisms of formation and biological implications. We have established a procedure using neutral thermal hydrolysis and reverse phase high-performance liquid chromatography to determine the content of the oxidation product 5-formyluracil (5-foU) in DNA. With this method, it is shown that 5-foU residues are formed with high frequency from thymine by quinone-sensitized UV-A photooxidation. Since 5-foU is also induced by ionizing radiation, it appears to be formed under conditions where thymidine radical cations are generated and react with molecular oxygen. It was previously shown that 5-foU is formed directly from [methyl-3H]thymine residues in radioactively labeled DNA by two consecutive transmutations of 3H to 3He. The theoretical basis for the kinetics of such conversion is presented in this paper, and the calculated yields are confirmed experimentally by measuring the content of 5-foU in [methyl-3H]thymine-labeled DNA aged for different time periods. Such DNA contains virtually only 5-(hydroxymethyl)uracil and 5-foU, apart from normal bases, and is therefore very useful for the investigation of repair enzyme activities involved in the repair of 5-foU-containing DNA. Using this substrate, a DNA glycosylase activity was identified in human cell extracts for the removal of 5-foU.(ABSTRACT TRUNCATED AT 250 WORDS)
- Published
- 1995
26. Sequence specificity for removal of uracil from U.A pairs and U.G mismatches by uracil-DNA glycosylase from Escherichia coli, and correlation with mutational hotspots
- Author
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Ingrid Eftedal, Siamal Pour Yazdankhah, Hilde Nilsen, and Hans E. Krokan
- Subjects
Uracil-DNA glycosylase ,DNA Repair ,Molecular Sequence Data ,Biophysics ,Deamination ,Context (language use) ,Mutational hotspot ,Biology ,medicine.disease_cause ,Biochemistry ,DNA Glycosylases ,Substrate Specificity ,chemistry.chemical_compound ,Structural Biology ,Consensus Sequence ,Genetics ,medicine ,Consensus sequence ,Escherichia coli ,Uracil ,Uracil-DNA Glycosidase ,Molecular Biology ,N-Glycosyl Hydrolases ,Base Composition ,Base Sequence ,Cell Biology ,Molecular biology ,chemistry ,DNA glycosylase ,Mutation ,DNA ,Sequence specificity - Abstract
The rate of removal of uracil from different positions in double-stranded DNA by uracil-DNA glycosylase from Escherichia coli varied more than 15-fold. Consensus sequences for good and poor removal were 5′-(A/T)UA(A/T)-3′ and 5′-(G/C)U(T/G/C)-3′, respectively. In general, the sequence context surrounding U was more important for the rate of removal than whether U was present in U·A pairs or U·G mispairs. Rates of removal of U from sites of amber mutations in the lacI gene, where mutation frequencies and deamination rates were known, indicated that the observed variation in removal is biologically significant.
- Published
- 1995
27. Properties of a recombinant human uracil-DNA glycosylase from the UNG gene and evidence that UNG encodes the major uracil-DNA glycosylase
- Author
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Geir Slupphaug, Hans E. Krokan, David W. Levine, Bodil Kavli, Nils M. Helle, Sangeeta Bharati, Terje Haug, and Ingrid Eftedal
- Subjects
Transcription, Genetic ,Base pair ,Molecular Sequence Data ,Deamination ,medicine.disease_cause ,Biochemistry ,law.invention ,DNA Glycosylases ,Substrate Specificity ,chemistry.chemical_compound ,MUTYH ,law ,medicine ,Escherichia coli ,Humans ,Isoelectric Point ,Uracil ,Uracil-DNA Glycosidase ,N-Glycosyl Hydrolases ,Genetics ,Base Sequence ,Molecular biology ,Recombinant Proteins ,Kinetics ,chemistry ,Oligodeoxyribonucleotides ,DNA glycosylase ,Uracil-DNA glycosylase ,Protein Biosynthesis ,Recombinant DNA ,HeLa Cells - Abstract
We have expressed a human recombinant uracil-DNA glycosylase (UNG delta 84) closely resembling the mature form of the human enzyme (UNG, from the UNG gene) in Escherichia coli and purified the protein to apparent homogeneity. This form, which lacks the first seven nonconserved amino acids at the amino terminus, has properties similar to a 50% homogeneous UDG purified from human placenta except for a lower salt optimum and a slightly lower specific activity. The recombinant enzyme removed U from ssDNA approximately 3-fold more rapidly than from dsDNA. In the presence of 10 mM NaCl, Km values were 0.45 and 1.6 microM with ssDNA and dsDNA, respectively, but Km values increased significantly with higher NaCl concentrations. The pH optimum for UNG delta 84 was 7.7-8.0; the activation energy, 50.6 kJ/mol; and the pI between 10.4 and 10.8. The enzyme displays a striking sequence specificity in removal of U from UA base pairs in M13 dsDNA. The sequence specificity for removal of U from UG mismatches (simulating the situation after deamination of C) was essentially similar to removal from UA matches when examined in oligonucleotides. However, removal of U from UG mismatches was in general slightly faster, and in some cases significantly faster, than removal from UA base pairs. Immunofluorescence studies using polyclonal antibodies against UNG delta 84 demonstrated that the major fraction of UNG was located in the nucleus. Furthermore, > 98% of the total uracil-DNA glycosylase activity from HeLa cell extracts was inhibited by the antibodies, indicating that the UNG protein represents the major uracil-DNA glycosylase in the cells.
- Published
- 1995
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