5 results on '"Hunki Paek"'
Search Results
2. Phenotypic and endotypic features of COPD associated with lung cancer development
- Author
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Kyeryoung Lee, David Cohn, Zongzhi Liu, Lei Ai, Hunki Paek, Lan Jin, Kalpana Raja, Minghao Li, Xingmin Zhang, Tomi Jun, Mitchell Higashi, William Oh, Ediz S. Calay, Radoslav Savic, Krish Ghosh, Andrew Kasarskis, Tommy Mullaney, Qi Pan, Eric Schadt, and Xiaoyan Wang
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Cancer Research ,Oncology - Abstract
e13563 Background: Chronic Obstructive Pulmonary Disease (COPD) is a heterogeneous disease with multiple phenotypes and endotypes and associated with lung cancer development. In this study, we analyzed the clinical features of COPD including various phenotypic and endotypic features from the electronic health records (EHR) as the potential risk factors for lung cancer development in a large cohort of COPD patients. Methods: We identified a COPD cohort based on electronic Medical Records and Genomics (eMERGE) network COPD cohort identification algorithms with minor modifications from the Mount Sinai Data Warehouse (2000-2020) and followed the patients on the first diagnosis of lung cancer. The development of lung cancer in COPD patients was confirmed by manual chart review. We retrieved the clinical features from EHRs and conducted Kaplan Meier (KM) analysis and multivariable Cox-regression modeling for hazard ratio (HR) analysis. Results: We found that 3.8 % of COPD patients (824 out of 21,658) developed lung cancer. While COPD patients with emphysema and smoking history (former or current) showed an increased risk of lung cancer onset, patients with concurrent asthma and corticosteroid (ICS) inhalation history showed a reduced risk of lung cancer onset (adjusted HR in Table). Interestingly, COPD patients with higher eosinophil counts showed late onset of lung cancer (>300 cells/ul, cancer rate at 5y=2.4%, p=< 0.002; 150-300 cells/ul, cancer rate at 5y=2.9%, p=0.003) when compared to patients with low eosinophils count (300 cells/ul; HR:0.72, 95% CI: 0.57-0.89, p=0.003) when compared to those with low eosinophils count (
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- 2022
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3. ER-mitochondria tethering by PDZD8 regulates Ca
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Seok-Kyu Kwon, Parsa Erfani, Liza A. Pon, Ashleigh Raczkowski, Yusuke Hirabayashi, Maëla A. Paul, Jinoh Lee, Wolfgang M. Pernice, Donald Petrey, Franck Polleux, and Hunki Paek
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0301 basic medicine ,Molecular neurobiology ,Saccharomyces cerevisiae Proteins ,Protein domain ,ERMES complex ,Biology ,Endoplasmic Reticulum ,Receptors, Metabotropic Glutamate ,Receptors, N-Methyl-D-Aspartate ,Article ,Mitochondrial Proteins ,03 medical and health sciences ,ERMES ,Mice ,0302 clinical medicine ,Cell physiology ,Protein Domains ,Animals ,Humans ,Calcium Signaling ,Cell organelles ,Calcium signaling ,Adaptor Proteins, Signal Transducing ,Neurons ,Multidisciplinary ,Binding protein ,Endoplasmic reticulum ,Genetic Complementation Test ,Signal transducing adaptor protein ,Membrane Proteins ,Dendrites ,Cell biology ,Mitochondria ,030104 developmental biology ,HEK293 Cells ,Cytoplasm ,Calcium ,030217 neurology & neurosurgery - Abstract
Interfaces between organelles are emerging as critical platforms for many biological responses in eukaryotic cells. In yeast, the ERMES complex is an endoplasmic reticulum (ER)–mitochondria tether composed of four proteins, three of which contain a SMP (synaptotagmin-like mitochondrial-lipid binding protein) domain. No functional ortholog for any ERMES protein has been identified in metazoans. Here, we identified PDZD8 as an ER protein present at ER-mitochondria contacts. The SMP domain of PDZD8 is functionally orthologous to the SMP domain found in yeast Mmm1. PDZD8 was necessary for the formation of ER-mitochondria contacts in mammalian cells. In neurons, PDZD8 was required for calcium ion (Ca 2+ ) uptake by mitochondria after synaptically induced Ca 2+ -release from ER and thereby regulated cytoplasmic Ca 2+ dynamics. Thus, PDZD8 represents a critical ER-mitochondria tethering protein in metazoans. We suggest that ER-mitochondria coupling is involved in the regulation of dendritic Ca 2+ dynamics in mammalian neurons.
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- 2017
4. FGF signaling is strictly required to maintain early telencephalic precursor cell survival
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Jean M. Hébert, Grigority Gutin, and Hunki Paek
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Telencephalon ,animal structures ,Cell Survival ,Neurogenesis ,Nerve Tissue Proteins ,Biology ,Fibroblast growth factor ,Mice ,FGF8 ,Pregnancy ,Precursor cell ,medicine ,Animals ,Molecular Biology ,Embryonic Stem Cells ,In Situ Hybridization ,Research Articles ,Body Patterning ,Mice, Knockout ,Genetics ,Neural Plate ,Cerebrum ,Gene Expression Regulation, Developmental ,Forkhead Transcription Factors ,Receptors, Fibroblast Growth Factor ,Mice, Mutant Strains ,Cell biology ,Fibroblast Growth Factors ,medicine.anatomical_structure ,nervous system ,embryonic structures ,Forebrain ,Female ,Signal transduction ,Neural plate ,Signal Transduction ,Developmental Biology - Abstract
The FGF family of extracellular signaling factors has been proposed to play multiple roles in patterning the telencephalon, the precursor to the cerebrum. In this study, unlike previous ones, we effectively abolish FGF signaling in the anterior neural plate via deletion of three FGF receptor (FGFR) genes. Triple FGFR mutant mice exhibit a complete loss of the telencephalon, except the dorsal midline. Disruption of FGF signaling prior to and coincident with telencephalic induction reveals that FGFs promote telencephalic character and are strictly required to keep telencephalic cells alive. Moreover,progressively more severe truncations of the telencephalon are observed in FGFR single, double and triple mutants. Together with previous gain-of-function studies showing induction of Foxg1 expression and mirror-image duplications of the cortex by exogenous FGF8, our loss-of-function results suggest that, rather than independently patterning different areas, FGF ligands and receptors act in concert to mediate organizer activity for the whole telencephalon.
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- 2009
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5. Increased β-catenin activity in the anterior neural plate induces ectopic mid-hindbrain characteristics
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Jean M. Hébert, Frank Diaz, Michelle W. Antoine, and Hunki Paek
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Telencephalon ,medicine.medical_specialty ,Cell type ,Beta-catenin ,animal structures ,Hindbrain ,Fibroblast growth factor ,Article ,Mice ,Mesencephalon ,Internal medicine ,medicine ,Animals ,beta Catenin ,Neural Plate ,biology ,Cerebrum ,Wnt signaling pathway ,Mice, Mutant Strains ,Cell biology ,Fibroblast Growth Factors ,Rhombencephalon ,Wnt Proteins ,Endocrinology ,medicine.anatomical_structure ,nervous system ,Catenin ,embryonic structures ,biology.protein ,Neural plate ,Developmental Biology - Abstract
Background: The early telencephalon shares molecular features with the early mid-hindbrain region. In particular, these two developing brain areas each have a signaling center that secretes FGFs and an adjacent one that secretes WNTs. WNTs and FGFs each play essential roles in regulating cell fates in both the telencephalon and mid-hindbrain. Despite this similarity, telencephalic and mid-hindbrain precursors express distinct genes and ultimately generate different cell types, tissue morphologies, and neural functions. Results: Here we show that genetically increasing the level of β-catenin, a mediator of canonical WNT signaling, in the anterior neural plate causes a loss of telencephalic characteristics and a gain of mid-hindbrain characteristics. Conclusion: These results, together with previous ones demonstrating that increased WNT signaling in the anterior neural plate increases FGF expression, suggest that the levels of WNT and FGF signaling regulate telencephalic versus mid-hindbrain fates. Developmental Dynamics 241:242–246, 2012. © 2011 Wiley Periodicals, Inc.
- Published
- 2011
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