1. Additional file 1 of Human rs75776403 polymorphism links differential phenotypic and clinical outcomes to a CLEC18A p.T151M-driven multiomics
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Hsu, Yu-Wen, Wong, Henry Sung-Ching, Huang, Wan-Chen, Yeh, Yi-Hung, Hsiao, Chwan-Deng, Chang, Wei-Chiao, and Hsieh, Shie-Liang
- Abstract
Additional file 1: Table S1. Frequency of non-synonymous variants in CLEC18 genes among different ethnic populations from the data of 1000 Genome Project. Table S2. The 48 variants as significant cis-expression quantitative trait loci (cis-eQTL) for CLEC18 family genes (GTEx Portal). Table S3. The cis-eQTL annotation of rs75776403. Figure S1. Boxplot showing the distribution of CLEC18A transcript (mRNA) levels across rs75776403 genotypes. Table S4. The 86 quantitative traits (11 phenotype categories) included in this study (N = 68,080). Table S5. The 24 additional quantitative traits are included in this study. Table S6. Association results of rs75776403 to the quantitative traits. Table S7. The 84 binary traits (16 phenotype categories) are included in this study. Table S8. Association results of rs75776403 and binary traits. Table S9. The 19 ordered traits (4 phenotype categories) are included in this study. Table S10. Association results of rs75776403 and ordinary traits. Table S11. Phenome-wide association study for CLEC18A rs75776403 in UK Biobank (UKB) and BioBank Japan (BBJ). Table S12. Significantly enriched pathways (and/or gene sets) were identified by gene-set enrichment analysis (GSEA). Table S13. Gene-set enrichment analysis (GSEA) results of phosphoproteomics that were associated with rs75776403. Figure S2. Pairwise correlation plot showing a gene–gene correlation between genes that are involved in the cellular response to thyroid hormone stimulus (purple) and corticosteroid receptor signaling pathways (orange). CLEC18A gene is marked using a red dot. Table S14. Association between (A) rs75776403 or (B) CLEC18A mRNA level with thyroid hormone axial genes. Table S15. Gene set of cellular response to thyroid hormone stimulus and corticosteroid receptor signaling pathway in gene ontology (GO) biological process (BP) database. Table S16. Association between rs75776403 and corticosteroid receptor signaling or thyroid-stimulated pathway genes. Table S17. Association between CLEC18A and thyroid stimulated pathways or corticosteroid receptor signaling genes in adrenal gland, liver, ovary, and testis tissues from GTEx portal.
- Published
- 2022
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