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Identification of clinically relevant strains of bacteria increasingly relies on whole genome sequencing. The downstream bioinformatics steps necessary for calling variants from short read sequences are well-established but seldom validated against haploid genomes. We devised anin silicoworkflow to introduce single nucleotide polymorphisms (SNP) and indels into bacterial reference genomes, and computationally generate sequencing reads based on the mutated genomes. We then applied the method toMycobacterium tuberculosisH37Rv and used the synthetic reads as truth sets for evaluating several popular variant callers. Insertions proved especially challenging for most variant callers to correctly identify, relative to deletions and single nucleotide polymorphisms. With adequate read depth, however, variant callers that use high quality soft-clipped reads and base mismatches to perform local realignment consistently had the highest precision and recall in identifying medium-length insertions and deletions.

The near-surface geology of northern Germany is characterized by glacial deposits, deformed by rising Permian and Upper Triassic salt structures. Ground motions potentially associated with salt tectonic processes are very slow and are superimposed by signals of e.g. hydrological and anthropogenic sources. To measure them requires the detection of motion rates in the range of a few millimeters per year with sufficient spatial coverage. For large areas little is known about the rates and the characteristics of ground motions, even though they directly affect anthropogenic infrastructure and could have an impact on the future use of the underground for storage purposes or the exploitation of geothermal energy.To measure ground motion, we use radar interferometric time series data provided by the German Aerospace Center and the Federal Institute for Geosciences and Natural Resources' Ground motion service. These data are based on Synthetic Aperture Radar images acquired by ESA's ERS and Sentinel satellites. Time-series analyses are possible for temporally stable backscattering objects (persistent scatterers) on the ground. Generally, this results in spatially dense observations over built-up areas and sparse observations over rural areas.We use a set of geostatistical methods to analyze these time series data. We see signals of large-scale surface-deforming processes such as the subsidence of the marshes and small-scale signals like the swelling of Permian anhydrite at the Segeberger "Kalkberg". And we can observe subsidence processes over the historic town of Lübeck.Our work extends the area of application of the PS-InSAR technique from areas with high motion rates to regions with particulary low motion rates. We discuss methods that can be used to link ERS data to the Sentinel-1 data, in particular, to separate long-term motion processes from short-term effects. We are working on techniques that shall help to decompose different signal sources. Finally, we aim to prepare a set of tools, that can be used by the community.

A 20-year-old male presented with multiple subcutaneous nodules on the head, neck, chest and oral cavity. FNA and biopsy showed pigmented fungal hyphae diagnostic of multifocal phaeohyphomycosis, found to be Exophiala spinifera by molecular diagnostics. The presentation initially raised concern for disseminated disease and occult immunosuppression. However, the patient appeared to be immunocompetent and otherwise healthy. Upon further inquiry, the patient was in a motor vehicle accident 4 years before presentation; he was ejected into a vegetable field resulting in multiple open wounds. Multifocal phaeohyphomycosis usually indicates disseminated systemic disease from immunosuppression and carries a grave prognosis.

BACKGROUND Humans suffer from infections caused by single species or more complex polymicrobial communities. Identification of infectious bacteria commonly employs microbiological culture, which depends upon the in vitro propagation and isolation of viable organisms. In contrast, detection of bacterial DNA using next generation sequencing (NGS) allows culture-independent microbial profiling, potentially providing important new insights into the microbiota in clinical specimens. METHODS NGS 16S rRNA gene sequencing (NGS16S) was compared with culture using (a) synthetic polymicrobial samples for which the identity and abundance of organisms present were precisely defined and (b) primary clinical specimens. RESULTS Complex mixtures of at least 20 organisms were well resolved by NGS16S with excellent reproducibility. In mixed bacterial suspensions (107 total genomes), we observed linear detection of a target organism over a 4-log concentration range (500–3 × 106 genomes). NGS16S analysis more accurately recapitulated the known composition of synthetic samples than standard microbiological culture using nonselective media, which distorted the relative abundance of organisms and frequently failed to identify low-abundance pathogens. However, extended quantitative culture using selective media for each of the component species recovered the expected organisms at the proper abundance, validating NGS16S results. In an analysis of sputa from cystic fibrosis patients, NGS16S identified more clinically relevant pathogens than standard culture. CONCLUSIONS Biases in standard, nonselective microbiological culture lead to a distorted characterization of polymicrobial mixtures. NGS16S demonstrates enhanced reproducibility, quantification, and classification accuracy compared with standard culture, providing a more comprehensive, accurate, and culture-free analysis of clinical specimens.

The observation that cholinergic deafferentation of circuits projecting from forebrain basal nuclei to frontal and hippocampal circuits occurs in Alzheimer's disease has led to drug-targeting of muscarinic M1 receptors to alleviate cognitive symptoms. The high homology within the acetylcholine binding domain of this family however has made receptor-selective ligand development challenging. This work presents the synthesis scheme, pharmacokinetic and structure-activity-relationship study findings for M1-selective ligand, LY593093. Pharmacologically the compound acts as an orthosteric ligand. The homology modeling work presented however will illustrate that compound binding spans from the acetylcholine pocket to the extracellular loops of the receptor, a common allosteric vestibule for the muscarinic protein family. Altogether LY593093 represents a growing class of multi-topic ligands which interact with the receptors in both the ortho- and allosteric binding sites, but which exert their activation mechanism as an orthosteric ligand.

Nosocomial infections pose a significant threat to patient health; however, the gold standard laboratory method for determining bacterial relatedness (pulsed-field gel electrophoresis [PFGE]) remains essentially unchanged 20 years after its introduction. Here, we explored bacterial whole-genome sequencing (WGS) as an alternative approach for molecular strain typing. We compared WGS to PFGE for investigating presumptive outbreaks involving three important pathogens: vancomycin-resistant Enterococcus faecium ( n = 19), methicillin-resistant Staphylococcus aureus ( n = 17), and Acinetobacter baumannii ( n = 15). WGS was highly reproducible (average ≤ 0.39 differences between technical replicates), which enabled a functional, quantitative definition for determining clonality. Strain relatedness data determined by PFGE and WGS roughly correlated, but the resolution of WGS was superior ( P = 5.6 × 10 −8 to 0.016). Several discordant results were noted between the methods. A total of 28.9% of isolates which were indistinguishable by PFGE were nonclonal by WGS. For A. baumannii , a species known to undergo rapid horizontal gene transfer, 16.2% of isolate pairs considered nonidentical by PFGE were clonal by WGS. Sequencing whole bacterial genomes with single-nucleotide resolution demonstrates that PFGE is prone to false-positive and false-negative results and suggests the need for a new gold standard approach for molecular epidemiological strain typing.

High-throughput sequencing of the taxonomically informative 16S rRNA gene provides a powerful approach for exploring microbial diversity. Here we compare the performances of two common “benchtop” sequencing platforms, Illumina MiSeq and Ion Torrent Personal Genome Machine (PGM), for bacterial community profiling by 16S rRNA (V1-V2) amplicon sequencing. We benchmarked performance by using a 20-organism mock bacterial community and a collection of primary human specimens. We observed comparatively higher error rates with the Ion Torrent platform and report a pattern of premature sequence truncation specific to semiconductor sequencing. Read truncation was dependent on both the directionality of sequencing and the target species, resulting in organism-specific biases in community profiles. We found that these sequencing artifacts could be minimized by using bidirectional amplicon sequencing and an optimized flow order on the Ion Torrent platform. Results of bacterial community profiling performed on the mock community and a collection of 18 human-derived microbiological specimens were generally in good agreement for both platforms; however, in some cases, results differed significantly. Disparities could be attributed to the failure to generate full-length reads for particular organisms on the Ion Torrent platform, organism-dependent differences in sequence error rates affecting classification of certain species, or some combination of these factors. This study demonstrates the potential for differential bias in bacterial community profiles resulting from the choice of sequencing platform alone.

Invoking a dialogue between two scholars, authors Jane Hoogestraat and Hillery Glasby discuss the exigence for, construction of, and differentiation between LGBT and queer ethos. Drawing from Larry Kramer’s The Normal Heart and the construction of a gay identity, the text explores connections between queer theory, LGBT(Q) ethos, and queer futurity, ultimately arguing for a more nuanced and critical understanding of the undecidability and performativity of LGBT and queer ethos. In framing LGBT and queer ethos as being at the same time a self and socially constructed and mediated—legitimate and illegitimate—ethos can be understood not only as a site for rhetorical agency, but also as an orientation and a form of activism. Finally, the text offers a case study of Adrienne Rich’s “Yom Kippur,” which is a poem that offers a queer (and) Jewish perspective on identity—from an individual and community level—exhibiting both an LGBT and queer ethos.

Next-generation DNA sequencing can be used to catalog individual organisms within complex, polymicrobial specimens. Here, we utilized deep sequencing of 16S rRNA to implicate Actinomadura madurae as the cause of mycetoma in a diabetic patient when culture and conventional molecular methods were overwhelmed by overgrowth of other organisms.

Es werden Transporterscheinungen in Flussigkeiten (Diffusion, Warmetransport, Stromungen und die Wanderung von Ionen im elektrischen Feld) und Festkorpern (Diffusion, Warmetransport und Ionenwanderung) aus Sicht ihrer Hilfsfunktion fur chemische und technische Prozesse behandelt. Dies bedeutet fur den Fall von Diffusion, Warmetransport und Stromungen ein Ubernehmen der fur gasformige Systeme entwickelten Transportgleichungen. Abgeschlossen wird das Kapitel mit der Beschreibung der Ionenwanderung im elektrischen Feld.

Neben den Grundlagen des Stofftransports in Gasen werden ausfuhrlich praktische Aspekte der Diffusion, Warmeleitung und von Gasstromungen vorgestellt und diskutiert.

Die Unumkehrbarkeit von realen Prozessen und die daraus ableitbaren Konsequenzen stehen im Mittelpunkt dieses Kapitels.

Mixed-metal molybdates are interesting host materials for ion-insertion electrodes due to their versatile crystal chemistry, which confers a highway for the conduction of electrons as well as ions. Silver decamolybdate in triclinic crystal structure (T-Ag6 Mo10 O33 ) consists of layers of MoO6 octahedra separated by arrays of silver ions that are able to store a high amount of charges.

High-throughput sequencing of the taxonomically informative 16S rRNA gene provides a powerful approach for exploring microbial diversity. Here we compare the performances of two common "benchtop" sequencing platforms, Illumina MiSeq and Ion Torrent Personal Genome Machine (PGM), for bacterial community profiling by 16S rRNA (V1-V2) amplicon sequencing. We benchmarked performance by using a 20-organism mock bacterial community and a collection of primary human specimens. We observed comparatively higher error rates with the Ion Torrent platform and report a pattern of premature sequence truncation specific to semiconductor sequencing. Read truncation was dependent on both the directionality of sequencing and the target species, resulting in organism-specific biases in community profiles. We found that these sequencing artifacts could be minimized by using bidirectional amplicon sequencing and an optimized flow order on the Ion Torrent platform. Results of bacterial community profiling performed on the mock community and a collection of 18 human-derived microbiological specimens were generally in good agreement for both platforms; however, in some cases, results differed significantly. Disparities could be attributed to the failure to generate full-length reads for particular organisms on the Ion Torrent platform, organism-dependent differences in sequence error rates affecting classification of certain species, or some combination of these factors. This study demonstrates the potential for differential bias in bacterial community profiles resulting from the choice of sequencing platform alone.

Introduction: Rhodococcus spp. have been implicated in a variety of infections in immunocompromised and immunocompetent hosts. Rhodococcus equi is responsible for the majority of reported cases, but Rhodococcus erythropolis, Rhodococcusgordoniae and Rhodococcusruber infections have been described. There are no prior reports of human infection with Rhodococcus fascians. Case presentation: We describe the unexpected finding of R. fascians in liver lesions incidentally noted at autopsy in an immunosuppressed patient status after bone-marrow transplant for acute lymphoblastic leukaemia who died of unrelated causes (septic shock due to Clostridium difficile colitis). At autopsy, an otherwise unremarkable liver contained several dozen well-demarcated sclerotic-appearing lesions measuring 0.1–0.3 cm in size. The absence of other bacterial or fungal DNA in the setting of histologically visible organisms argues against its presence as a contaminant and raises the consideration that R. fascians represents a human pathogen for the immunocompromised. Conclusion: Whether it represents the sole infectious agent responsible for the miliary lesions or a partially treated co-infection is impossible to determine, but our finding continues to reinforce the importance of molecular techniques in associating organisms with sites of infection and optimizing treatment of infectious diseases.

Mixed‐metal molybdates are interesting host materials for ion‐insertion electrodes due to their versatile crystal chemistry, which confers a highway for the conduction of electrons as well as ions. Silver decamolybdate in triclinic crystal structure (T‐Ag6Mo10O33) consists of layers of MoO6 octahedra separated by arrays of silver ions that are able to store a high amount of charges. NRF (Natl Research Foundation, S’pore) ASTAR (Agency for Sci., Tech. and Research, S’pore) Accepted version

Pythium insidiosum is an emerging human pathogen classified among brown algae and diatoms that can cause significant morbidity and mortality in otherwise healthy individuals. Here we describe a pediatric patient with pythiosis acquired in the southern United States, diagnosed by molecular screening and DNA sequencing of internal transcribed spacer region 1.

The differential diagnosis of diarrhea in immunocompromised patients encompasses many intestinal parasites including the coccidian Cystoisospora belli. Gastrointestinal infection with C. belli leads to cystoisosporiasis with diarrhea and, depending on host immune status, can cause extraintestinal disease. C. belli is usually diagnosed by examination of stool or intestinal biopsy specimens; however, the organism may be undetected using these test methods. Thus, more sensitive molecular tools for detection of pathogenic parasites are desirable. Herein is described a patient with AIDS who had persistent diarrhea of unknown cause. Microscopic examinations of stool and ileal biopsy specimens were initially unremarkable for any specific pathogen. Screening of DNA extracted from biopsy material using extended-range PCR primers recognizing conserved DNA sequences found in many fungi and parasites revealed infection with C. belli, which was confirmed at repeat histologic analysis. Extended-range PCR screening was used because the differential diagnosis was broad and other tools were not applied, yet this molecular approach led to the appropriate diagnosis and treatment of the condition. Thus, this approach offers a promising test for diagnosis of parasitic diseases that elude diagnosis using conventional methods.

The paper is a mini review on the authors own work related to laser induced processes at metal nanoparticle/oxidic support systems. A number of aspects will be addressed ranging from the nano particle size dependence on the efficiency of the photochemical process, the influence of low coordination sites of the nano particles and dynamical processes such as energy transfer between adsorbates, light induced particle changes or spill over processes. The paper reviews nano and femtosecond laser experiments as well as quantum state resolved experiments. Results will be compared to typical findings from simple oxidic supports and metal single crystals. This review may be of interest for future photocatalyst development for applications such as solar fuel synthesis and related problems.

The adsorption of CO on well-defined Co–Pt alloy surfaces prepared by physical vapour deposition in ultra-high vacuum was studied by Fourier transform infrared reflection absorption spectroscopy (FT-IRRAS) and temperature-programmed desorption (TPD) spectroscopy. The adsorption behaviour was found to depend strongly on the composition of the surface and the first subsurface atomic layer. In the case of low Co concentrations at the surface CO adsorbs preferentially on Pt sites, however with an enthalpy of adsorption which is substantially lowered when compared to CO adsorption on Pt single crystals. TPD shifts of ∼60 K were found. When Co dominates the surface composition, CO adsorbs preferentially on Co sites, however with an enthalpy of adsorption leading to a TPD shift by ∼80 K to higher temperatures with respect to monometallic single crystals. This behaviour can be explained by ligand effects, i.e., by an electronic influence of the presence of a second metal in the chemical environment of a given adsorption center. The experimental findings were compared with theoretical calculations.

Mount Rushmore National Memorial is located in the east-central part of the Black Hills area of South Dakota and is challenged to provide drinking water to about 3 million annual visitors and year-round park personnel. An environmental concern to water resources within Mount Rushmore National Memorial has been the annual aerial fireworks display at the memorial for the Independence Day holiday during 1998– 2009. A major concern of park management is the contamination of groundwater and surface water by perchlorate, which is used as an oxidizing agent in firework displays. A study by the U.S. Geological Survey, in cooperation with the National Park Service, was completed to characterize the occurrence of perchlorate and selected metals (constituents commonly associated with fireworks) in groundwater and surface water within and adjacent to Mount Rushmore National Memorial during 2011–15. Concentrations of perchlorate and metals in 106 water samples (collected from 6 groundwater sites and 14 surface-water sites) and 11 soil samples (collected from 11 soil sites) are reported. Within the Mount Rushmore National Memorial boundary, perchlorate concentrations were greatest in the Lafferty Gulch drainage basin, ranging from less than 0.20 to 38 micrograms per liter (μg/L) in groundwater samples and from 2.2 to 54 μg/L in surface-water samples. Sites within the Starling Gulch drainage basin also had some evidence of perchlorate contamination, with concentrations ranging from 0.61 to 19 μg/L. All groundwater and surface-water samples within the unnamed tributary to Grizzly Bear Creek drainage basin and reference sites outside the park boundary had concentrations less than 0.20 μg/L. Perchlorate concentrations in samples collected at the 200-foot-deep production well (Well 1) ranged from 17 to 38 μg/L with a median of 23 μg/L, whereas perchlorate concentrations in samples from the 500-foot-deep production well (Well 2) ranged from 2.1 to 17 μg/L, with a median of 6.1 μg/L. Perchlorate concentrations in samples of the treated groundwater were similar to the concentrations from Well 1, which was the predominant source of the water supply at Mount Rushmore National Memorial during the study period (2011–15). Springflow upstream from the production wells in the West Fork Lafferty Gulch drainage had the greatest perchlorate concentrations, ranging from 21 to 54 μg/L. The groundwater site within Lafferty Gulch drainage basin but downstream from the park boundary also had a perchlorate concentration less than 0.20 μg/L in the one sample collected at the site. Water samples collected at reference sites generally had concentrations of metals within the same range of those sites within the Mount Rushmore National Memorial boundary, presenting little evidence of metal contamination due to anthropogenic factors within the park boundary. Soil samples were collected near most water sampling sites and within the Hall of Records Canyon where fireworks were launched. Perchlorate concentrations in soil were greatest in the West Fork Lafferty Gulch drainage and Hall of Records Canyon, which are topographically higher than the two groundwater wells. The perchlorate concentrations in groundwater and surface water within Lafferty Gulch drainage basin during 2011–15 were greater than the U.S. Environmental Protection Agency’s Interim Drinking Water Health Advisory benchmark of 15 μg/L. The perchlorate concentrations in the Mount Rushmore water supply relative to this benchmark are of concern; however, this health advisory is based on the assumption that consumers are using the supply as their primary water source and currently is not a regulated standard. The groundwater system at West Fork Lafferty Gulch is highly susceptible to contamination by way of recharge and is isolated from downstream movement by an intrusive body acting as a dam, which may explain why a contamination problem is not likely to disappear or disperse, as could happen in larger aquifer systems. The observed deposition of firework debris within Lafferty Gulch drainage basin coupled with the lack of alternative perchlorate sources indicates that past firework displays are the most probable source of perchlorate contamination.

The observation that cholinergic deafferentation of circuits projecting from forebrain basal nuclei to frontal and hippocampal circuits occurs in Alzheimer's disease has led to drug-targeting of muscarinic M1 receptors to alleviate cognitive symptoms. The high homology within the acetylcholine binding domain of this family however has made receptor-selective ligand development challenging. This work presents the synthesis scheme, pharmacokinetic and structure-activity-relationship study findings for M1-selective ligand, LY593093. Pharmacologically the compound acts as an orthosteric ligand. The homology modeling work presented however will illustrate that compound binding spans from the acetylcholine pocket to the extracellular loops of the receptor, a common allosteric vestibule for the muscarinic protein family. Altogether LY593093 represents a growing class of multi-topic ligands which interact with the receptors in both the ortho- and allosteric binding sites, but which exert their activation mechanism as an orthosteric ligand.

Intramolecular click chemistry was utilized to effect synthesis of the benzofused, triazole ring systems. The trimethylsilyl group was found to impede the reaction progress, and therefore, conditions employing in situ removal of the TMS group coupled with microwave irradiation give the penultimate targets with good conversion.

Spirituality and religion are valued constructs for a large population in America. Each person carries a set of values and beliefs that may aid in their well-being. Spiritual and religious discussions within therapy can be essential for treatment. As therapists, we are expected to provide a safe therapeutic atmosphere for our clients. Therefore the therapist has the responsibility to be aware of personal issues and to integrate spiritual/ religious discussions. In addition, levels of differentiation are important in understanding the self of the therapist. The authors propose that therapists must be aware of their personal level of differentiation in order to effectively integrate spiritual/religious discussions in therapy.

The water quality of Rapid Creek is important because the reach that flows through Rapid City, South Dakota, is a valuable spawning area for a self-sustaining trout fishery, actively used for recreation, and a seasonal municipal water supply for the City of Rapid City. This report presents the current (2008–14) water-quality characteristics of urban stormwater runoff in selected drainage networks within the City of Rapid City, and provides an evaluation of the pollutant reductions of wetland channels implemented as a best-management practice. Stormwater runoff data were collected at nine sites in three drainage basins within Rapid City: the Arrowhead (2 monitoring sites), Meade-Hawthorne (1 monitoring site), and Downtown (6 monitoring sites) drainage basins. Stormwater runoff was evaluated for concentrations of total suspended solids (TSS) and bacteria at sites in the Arrowhead and Meade-Hawthorne drainage basins, and for concentrations of TSS, chloride, bacteria, nutrients, and metals at sites in the Downtown drainage basin. For the Arrowhead and Meade-Hawthorne sites, eventmean concentrations typically exceeded the TSS and bacteria beneficial-use criteria for Rapid Creek by 1–2 orders of magnitude. Comparing the two drainage basins, median TSS event-mean concentrations were more than two times greater at the Meade-Hawthorne outlet (520 milligrams per liter) than the Arrowhead outlet (200 milligrams per liter). Median fecal coliform bacteria event-mean concentrations also were greater at the Meade-Hawthorne outlet site (30,000 colony forming units per 100 milliliters) than the Arrowhead outlet site (17,000 colony forming units per 100 milliliters). A comparison to relevant standards indicates that stormwater runoff from the Downtown drainage basin exceeded criteria for bacteria and TSS, but concentrations generally were below standards for nutrients and metals. Stormwater-quality conditions from the Downtown drainage basin outfalls were similar to or better than stormwater-quality conditions observed in the Arrowhead and Meade-Hawthorne drainage basins. Three wetland channels located at the outlet of the Downtown drainage basin were evaluated for their pollutant reduction capability. Mean reductions in TSS and lead concentrations were greater than 40 percent for all three wetland channels. Total nitrogen, phosphorus, copper, and zinc concentrations also were reduced by at least 20 percent at all three wetlands. Fecal coliform bacteria concentrations typically were reduced by about 21 and 36 percent at the 1st and 2nd Street wetlands, respectively, but the reduction at the 3rd Street wetland channel was nearly zero percent. Total wetland storage volume affected pollutant reductions because TSS, phosphorus, and ammonia reductions were greatest in the wetland with the greatest volume. Chloride concentrations typically increased from inflow to outflow at the 2nd and 3rd Street wetland channels.

Spiral computed tomographic angiography (CTA) is a noninvasive method to diagnose renal artery stenosis (RAS). In digital subtraction angiography (DSA), contrast media (CM) is injected directly into the renal artery; in CTA, a greater amount of CM is injected intravenously, potentially leading to an increased incidence of CM nephropathy.We investigated 80 patients with suspected RAS randomized to either CTA or DSA prospectively. The following parameters were determined: serum creatinine level and single-shot inulin clearance for evaluation of renal function and urine alpha1-microglobulin and beta-N-acetyl-glucoseaminidase (beta-NAG) as markers for tubular toxicity. Data from 16 patients undergoing angioplasty in the same session were excluded.In the CTA and DSA groups, 163 +/- 13 and 104 +/- 56 mL of CM (mean +/- SD; P0.0001) were administered, respectively. Mean serum creatinine levels increased from 1.78 +/- 1.61 to 1.92 +/-1.73 mg/dL (157 +/- 142 to 170 +/- 153 micromol/L; P = 0.00001) in the CTA group and from 1.52 +/- 1.23 to 1.60 +/- 1.28 mg/dL (134 +/- 109 to 141 +/- 113 micromol/L; P = 0.01) in the DSA group. Mean inulin clearance decreased from 63 +/- 28 to 58 +/- 23 mL/min (P = 0.01) and 65 +/- 26 to 62 +/- 26 mL/min (P0.01), median beta-NAG levels increased from 4.6 to 6.0 U/g creatinine (P = not significant) and 2.5 to 8.0 U/g creatinine (P0.001), and median alpha1-microglobulin levels increased from 13 to 17 microg/g creatinine (P0.025) and 11 to 21 microg/g creatinine (P = not significant) in the CTA and DSA groups, respectively. CM nephropathy occurred in 3 of 33 patients in the CTA group and 2 of 31 patients in the DSA group. The increase in creatinine level was reversible in all patients within 7 days.On this study, CTA performed for the detection of RAS is not associated with an increased risk for CM nephropathy compared with intraarterial DSA despite a greater dose of CM.

The aim of the present study was to analyse the effect of organic coating of titanium implants on periimplant bone formation and bone/implant contact. Three types of implants were used: (i) Ti6Al4V implants with polished surface (control 1) (ii) Ti6Al4V implants with collagen coating (control 2) (iii) Ti6Al4V implants with collagen coating and covalently bound RGD peptides. All implants had square cross-sections with an oblique diameter of 4.6 mm and were inserted press fit into trephine burr holes of 4.6 mm in the mandibles of 10 beagle dogs. The implants of five animals each were evaluated after a healing period of 1 month and 3 months, during which sequential fluorochrome labelling of bone formation was performed. Bone formation was evaluated by morphometric measurement of the newly formed bone around the implant and the percentage of implant bone contact. After 1 month there was only little bone/implant contact, varying between 2.6 and 6.7% in the cortical bone and 4.4 and 5.7% in the cancellous bone, with no significant differences between the three types of implants. After 3 months, implants with polished surfaces exhibited 26.5 and 31.2% contact in the cortical and cancellous bone, respectively, while collagen-coated implants had 19.5 and 28.4% bone contact in these areas. Implants with RGD coating showed the highest values with 42.1% and 49.7%, respectively. Differences between the surface types as such were not significant, but the increase in bone/implant contact from 1 to 3 months postoperatively was significant only in the group of RGD-coated implants (P = 0.008 and P = 0.000). The results of this pilot study thus provide only weak evidence that coating of titanium implants with RGD peptides in the present form and dosage may increase periimplant bone formation in the alveolar process. The results therefore require further verification in a modified experimental setting.

Methicillin-resistant Staphylococcus aureus (MRSA) infections pose a major challenge in health care, yet the limited heterogeneity within this group hinders molecular investigations of related outbreaks. Pulsed-field gel electrophoresis (PFGE) has been the gold standard approach but is impractical for many clinical laboratories and is often replaced with PCR-based methods. Regardless, both approaches can prove problematic for identifying subclonal outbreaks. Here, we explore the use of whole-genome sequencing for clinical laboratory investigations of MRSA molecular epidemiology. We examine the relationships of 44 MRSA isolates collected over a period of 3 years by using whole-genome sequencing and two PCR-based methods, multilocus variable-number tandem-repeat analysis (MLVA) and spa typing. We find that MLVA offers higher resolution than spa typing, as it resolved 17 versus 12 discrete isolate groups, respectively. In contrast, whole-genome sequencing reproducibly cataloged genomic variants (131,424 different single nucleotide polymorphisms and indels across the strain collection) that uniquely identified each MRSA clone, recapitulating those groups but enabling higher-resolution phylogenetic inferences of the epidemiological relationships. Importantly, whole-genome sequencing detected a significant number of variants, thereby distinguishing between groups that were considered identical by both spa typing (minimum, 1,124 polymorphisms) and MLVA (minimum, 193 polymorphisms); this suggests that these more conventional approaches can lead to false-positive identification of outbreaks due to inappropriate grouping of genetically distinct strains. An analysis of the distribution of variants across the MRSA genome reveals 47 mutational hot spots (comprising ∼2.5% of the genome) that account for 23.5% of the observed polymorphisms, and the use of this selected data set successfully recapitulates most epidemiological relationships in this pathogen group.

Corynebacterium jeikeium is an opportunistic pathogen which has been noted for significant genomic diversity. The population structure within this species remains poorly understood. Here we explore the relationships among fifteen clinical isolates of C. jeikeium (reference strains K411 and ATCC 43734, and 13 primary isolates collected over a period of 7 years) through genetic, genomic, and phenotypic studies. We report a high degree of divergence among strains based on 16S ribosomal RNA (rRNA) gene and rpoB gene sequence analysis, supporting the presence of genetically distinct subgroups. Whole genome sequencing indicates genomic-level dissimilarity among subgroups, which qualify as 4 separate and distinct Corynebacterium species based on an Average Nucleotide Identity (ANIb) threshold of < 95%. Functional distinctions in antibiotic susceptibilities and metabolic profiles characterize two of these genomospecies, allowing their differentiation from others through routine laboratory testing. The remaining genomospecies can be classified through a biphasic approach integrating phenotypic testing and rpoB gene sequencing. The genomospecies predominantly recovered from patient specimens does not include either of the existing C. jeikeium reference strains, implying that studies of this pathogen would benefit from examination of representatives from the primary disease-causing group. The clinically dominant genomospecies also has the smallest genome size and gene repertoire, suggesting the possibility of increased virulence relative to the other genomospecies. The ability to classify isolates to one of the four C. jeikeium genomospecies in a clinical context provides diagnostic information for tailoring antimicrobial therapy and may aid in identification of species-specific disease associations.

Intramolecular click chemistry was utilized to effect synthesis of the benzofused, triazole ring systems. The trimethylsilyl group was found to impede the reaction progress, and therefore, conditions employing in situ removal of the TMS group coupled with microwave irradiation give the penultimate targets with good conversion.

The aim of this study was to compare renal function between patients with renal angiography and patients with renal angiography and angioplasty (AP) for renal artery stenosis (RAS). Forty-seven patients with suspected RAS were prospectively investigated by digital subtraction angiography (DSA) using non-ionic low osmolar contrast media (CM). In 22 patients RAS was detected and in 16 cases an angioplasty was performed in the same session. The following parameters were determined 1 day prior to and after the DSA, respectively: serum creatinine (S-Crea, micromol/l) and single-shot inulin clearance (In-Cl, ml/min) for the evaluation of renal function; and urine alpha 1-microglobuline (AMG, microg/g Crea) and beta-N-acetyl-glucoseaminidase (beta-NAG, U/g Crea) as markers of tubular toxicity. Serum creatinine was measured additionally 2 days after CM had been injected. In both groups with and without AP 174+/-65 and 104+/-56 ml of CM ( p0.0005) were used, respectively. There were no differences with regard to renal function or risk factors for CM nephrotoxicity between both groups. In the group with AP S-Crea and In-Cl (each: mean+/-SD) did not change significantly (before DSA: 171+/-158 and 61+/-24, after DSA: 189+/-177 and 61+/-25, respectively), beta-NAG (median) rose from 4 to 14 ( p0.05) and AMG from 8 to 55 (n.s., because of high SD). In the group without AP S-Crea increased from 134+/-109 to 141+/-113 ( p0.01), In-Cl dropped from 65+/-26 to 62+/-26 ( p0,01), beta NAG (median) rose from 4 to 8 ( p=0.01), and AMG from 7 to 10 (n.s.). A rise in baseline S-Crea by more than 25% or 44 micromol/l occurred in 4 and 2 patients in the group with and without AP, respectively. Creatinine increase was reversible in all cases within 7 days. In this study using sensitive methods to detect changes of renal function and tubular toxicity no additional renal function impairment in DSA with angioplasty for RAS compared with DSA alone could be demonstrated. Our data suggest that AP performed for RAS has a beneficial effect on renal function.

The electronic, chemical and structural properties of interfaces between semiconductors and metallic films play an important role in many scientifically interesting topics. In this work systems composed of GaAs and ultra thin platinum films are investigated using techniques like XPS, SPM and static as well as time-resolved nonlinear optical methods (second harmonic generation, SHG). The process parameter dependency of the interface quality is investigated and its influence on the electronic properties within the space-charge region is shown. Time-resolved experiments reveal the strong impact of the metal deposition onto the charge carrier dynamics and of coherent lattice oscillations in this near surface regions of the investigated samples.

Carbon nanotubes are versatile applicable. They can be used within measurement instrumentations (as tips for scanning tunneling microscopy), displays (as component for flat and luminous field emission screens) and for the enhancement of synthetic materials (improvement of their mechanical behavior). Furthermore, there are transistors and accumulators made out of carbon nanotubes (CNT). Due to the versatility and the achievements of CNTs, it is also interesting to manufacture nanotubes and -fibers out of different materials. Martin Steinhart et al. succeeded to fabricate nanotubes and nanofibers out of various polymer materials by template wetting [1-3]. The template wetting is affected by the basic principles of surface coating/wetting and capillarity. The wetting emerges when low-energy liquids like polymer solutions or melts interact with porous substrates with high surface energies like aluminum oxide membranes (AAO) or macro-porous silicon. After wetting of the membrane walls, the nanotubes or –fibers need to cure before removing the template with sodium hydroxide (when using AAO) or acid. With help of the template wetting method, it is also possible to manufacture nanofibers and –tubes out of classical bulk-heterojunction solar cell materials (PCBM: Pheny-C61-butyric acid methyl ester and P3HT: Poly(3-hexylthiophene-2,5-diyl)). Therefore a device has been developed, which should be introduced in this paper (Figure 1a)). With this element (Vacuum-supported Suction-System, VSS) [4], it is also possible to synthesize Core-Shell-nanotubes, it can be used with educt melts as well as educt solutions. Assemblies of well-defined, uniform and almost defect free nanotubes can be synthesized by this method. The VSS facilitates a simple fabrication of nanotubes filled with nanoparticles. Also PCBM/P3HT-Core-Shell-nanotubes are synthesized in this way (Figure 1 b) & c)) and are prepared and optimized for the application within Bulk-Heterojunction solar cells. Figure 1: a) Layout of vacuum-supported suction-system, VSS [4], b & c) TEM-images of Core (PCBM, red)-Shell-(P3HT, white)-nanotubes [4] References: 1. M. Steinhart, J.H. Wendorff, A. Greiner, R.B. Wehrspohn, K. Nielsch, J. Schilling, J. Choi, U. Gösele, Science, 296 (2002). 2. M. Steinhart, J.H. Wendorff, R.B. Wehrspohn, ChemPhysChem, 4 (2003). 3. M. Steinhart et al., Angewandte Chemie International Edition, 43, 1334-1344 (2004) 4. M. Rastedt, „Design und Optimierung organischer Nanoröhrchen (für die potentielle Anwendung in kostengünstigen organischen Photovoltaik-Bauteilen)“, PhD Thesis, University of Oldenburg (2013) Figure 1

The influence of substituted benzaldehydes and their derivatives as inhibitors for hydrogen evolution on smooth and porous negative electrodes of the lead/acid system is investigated by cyclic voltammetric measurements. The experiments have been carried out with and without the presence of antimony. The effect of the inhibitors can be distinguished by a moderate and a strong inhibiting action. Use of these inhibitors in flooded lead/acid batteries can reduce water loss during cycling by 50%.