1. Optimizing drug combinations against multiple myeloma using a quadratic phenotypic optimization platform (QPOP)
- Author
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Rashid, Masturah Bte Mohd Abdul, Toh, Tan Boon, Hooi, Lissa, Silva, Aleidy, Zhang, Yanzhou, Tan, Pei Fang, Teh, Ai Ling, Karnani, Neerja, Jha, Sudhakar, Ho, Chih-Ming, Chng, Wee Joo, Ho, Dean, and Chow, Edward Kai-Hua
- Subjects
Cyclin-Dependent Kinase Inhibitor p21 ,Mitomycin ,Messenger ,Drug Resistance ,Decitabine ,Medical and Health Sciences ,Cell Line ,Dose-Response Relationship ,Bortezomib ,Mice ,Non-Receptor Type 6 ,Rare Diseases ,hemic and lymphatic diseases ,Antineoplastic Combined Chemotherapy Protocols ,Animals ,Humans ,Cancer ,Neoplastic ,Tumor ,Drug Synergism ,Hematology ,DNA Methylation ,Biological Sciences ,Tumor Burden ,High-Throughput Screening Assays ,Phenotype ,Orphan Drug ,Gene Expression Regulation ,Genes ,5.1 Pharmaceuticals ,6.1 Pharmaceuticals ,RNA ,Neoplasm ,Protein Tyrosine Phosphatase ,Drug ,Multiple Myeloma ,Tumor Suppressor ,DNA Damage - Abstract
Multiple myeloma is an incurable hematological malignancy that relies on drug combinations for first and secondary lines of treatment. The inclusion of proteasome inhibitors, such as bortezomib, into these combination regimens has improved median survival. Resistance to bortezomib, however, is a common occurrence that ultimately contributes to treatment failure, and there remains a need to identify improved drug combinations. We developed the quadratic phenotypic optimization platform (QPOP) to optimize treatment combinations selected from a candidate pool of 114 approved drugs. QPOP uses quadratic surfaces to model the biological effects of drug combinations to identify effective drug combinations without reference to molecular mechanisms or predetermined drug synergy data. Applying QPOP to bortezomib-resistant multiple myeloma cell lines determined the drug combinations that collectively optimized treatment efficacy. We found that these combinations acted by reversing the DNA methylation and tumor suppressor silencing that often occur after acquired bortezomib resistance in multiple myeloma. Successive application of QPOP on a xenograft mouse model further optimized the dosages of each drug within a given combination while minimizing overall toxicity in vivo, and application of QPOP to ex vivo multiple myeloma patient samples optimized drug combinations in patient-specific contexts.
- Published
- 2018