1. Evolutionary conserved networks of human height identify multiple Mendelian causes of short stature
- Author
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Christian Thiel, H. G. Doerr, Christian Büttner, Martin Zenker, Christiane Zweier, Perundurai S. Dhandapany, Steffen Uebe, Carina Vogl, Heinrich Sticht, André Reis, Dagmar Wieczorek, Cornelia Kraus, Rami Abou Jamra, Alessandro De Luca, Anna Marie Jung, Leila Taher, Patrizia Klinger, Bernt Popp, Arif B. Ekici, Fulvia Ferrazzi, Anita Rauch, Tilman R. Rohrer, Erdmute Kunstmann, Antje Wiesener, and Nadine N. Hauer
- Subjects
Male ,Candidate gene ,Multifactorial Inheritance ,Population ,Medizin ,Dwarfism ,Biology ,Short stature ,Article ,03 medical and health sciences ,symbols.namesake ,Exome Sequencing ,Genetics ,medicine ,Humans ,Exome ,DNA sequencing ,Human height ,education ,Child ,Genetics (clinical) ,Exome sequencing ,0303 health sciences ,education.field_of_study ,Genetic counselling ,Disease genetics ,030305 genetics & heredity ,Infant ,medicine.disease ,Idiopathic short stature ,Cytoskeletal Proteins ,Child, Preschool ,Mendelian inheritance ,symbols ,Female ,medicine.symptom - Abstract
Height is a heritable and highly heterogeneous trait. Short stature affects 3% of the population and in most cases is genetic in origin. After excluding known causes, 67% of affected individuals remain without diagnosis. To identify novel candidate genes for short stature, we performed exome sequencing in 254 unrelated families with short stature of unknown cause and identified variants in 63 candidate genes in 92 (36%) independent families. Based on systematic characterization of variants and functional analysis including expression in chondrocytes, we classified 13 genes as strong candidates. Whereas variants in at least two families were detected for all 13 candidates, two genes had variants in 6 (UBR4) and 8 (LAMA5) families, respectively. To facilitate their characterization, we established a clustered network of 1025 known growth and short stature genes, which yielded 29 significantly enriched clusters, including skeletal system development, appendage development, metabolic processes, and ciliopathy. Eleven of the candidate genes mapped to 21 of these clusters, including CPZ, EDEM3, FBRS, IFT81, KCND1, PLXNA3, RASA3, SLC7A8, UBR4, USP45, and ZFHX3. Fifty additional growth-related candidates we identified await confirmation in other affected families. Our study identifies Mendelian forms of growth retardation as an important component of idiopathic short stature.
- Published
- 2018