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Woody plant encroachment (WPE) is reshaping the physiognomy of grasslands and savannahs worldwide. At the same time, this habitat conversion is accelerating the loss of associated biodiversity. In general, studies on WPE have focused on abiotic factors, singly or in combination, that trigger this phenomenon. Despite its ecological relevance, very few studies have tackled the effects of WPE-spurred habitat transformation on animal species dependent on relatively open areas such as grasslands and savannas for survival. We studied a relict and almost extinct population of large, herbivorous guanacos ( Lama guanicoe ) in the Gran Chaco region, Santa Cruz department, Bolivia. We tested whether guanacos were using habitats (at particular and distinct stages of WPE) in relation to their availability. Although this species is considered a generalist herbivore. We tested variation in habitat use focusing on two spatial scales. First, at the landscape level, we performed aerial surveys. Second, at the fine scale, we tracked six groups of guanacos for twenty months and documented the various habitats used within their approximate home ranges. At both scales, we performed a Manly-Chesson’s index referring to the standardised proportional use of each habitat divided by the proportional availability of each, with the values for all habitats summing to 1. An index value 1 suggests, respectively, that a habitat is avoided or selected. We found a disproportionate use of open vegetation (scrubland and grassland) by guanacos in relation to habitat availability at both scales. In addition, the current distribution range of the species is restricted to less than 800 km 2 of the approximately 3,000 km² potentially available in 1998. We confirmed a contraction between 1996 and 2006 in the distribution of the local Chacoan guanaco population from the area where guanacos were first monitored towards the Kaa-Iya National Park border. Our results showed that guanacos are restricted to relatively open areas. Furthermore, the observed reduction in the area previously occupied by the species could be the beginning of a distributional shift and potential loss of the guanaco’s geographic range due to habitat replacement. The latter was also reflected in a previous dietary study of this population we found that guanacos largely consumed the native grass A. mendocina (Poaceae), which has shrunk in distribution by 90 % in this region over a 40 year period and is gradually being replaced by an invasive forb, Lippia sp. Therefore, if the overall purpose on evaluating habitat use is to understand the basic requirements to sustain this population of guanacos, we need to highlight the poor quality and acute regression of the current preferred habitat. In this case, habitat structure can have a profound effect on the success of the guanaco population recovery and its long-term establishment. Therefore, we urge researchers and decision makers to look beyond the more direct human-induced pressures on the species, such as hunting, competition with domestic livestock and agricultural development and consider the importance of WPE as a direct driver for habitat loss.

Three model arginine-rich tripeptides RXR (X = W, F or non-natural residue 2-napthylalanine) were investigated as antimicrobial agents, with a specific focus to target Pseudomonas aeruginosa through membrane lysis. Activity against biofilms was related to binding of the second messenger molecule, nucleotide bis-(3'-5')-cyclic dimeric guanosine monophosphate (c-di-GMP). Strong selective activity against P. aeruginosa in planktonic form was observed for RFR and RWR.

The preparation of hydrogels and stable emulsions is important in the formulation of many functional nanostructured soft materials. We investigate the multifunctional self-assembly and bioactivity properties of a novel surfactant-like peptide (SLP) that shows antimicrobial activity, is able to form hydrogels without pH adjustment, and is able to stabilize oil-in-water emulsions. Furthermore, we demonstrate on-demand de-emulsification in response to the protease enzyme elastase. We show that SLP (Ala)(9)-Arg (A(9)R) forms beta-sheet fibers above a critical aggregation concentration and that water-in-oil emulsions are stabilized by a coating of beta-sheet fibers around the emulsion droplets. Furthermore, we demonstrate enzyme-responsive de-emulsification, which has potential in the development of responsive release systems. The peptide shows selective antimicrobial activity against Gram-negative pathogens including Pseudomonas aeruginosa, which causes serious infections. Our results highlight the utility of SLPs in the stabilization of oil/water emulsions and the potential for these to be used to formulate antimicrobial peptide emulsions which are additionally responsive to protease. The peptide A(9)R has pronounced antibacterial activity against clinically challenging pathogens, and its ability to form beta-sheet fibers plays a key role in its diverse structural properties, ranging from hydrogel formation to emulsion stabilization.

The identity of 51 isolates of Armillaria from 15 Quercus robur trees in poor health, and a single healthy tree, at nine sites in England, was determined using multilocus sequence analysis (MLSA) of three gene regions. Sequences of the ITS-1, IGS-1 and EF-1α gene regions were obtained by polymerase chain reaction (PCR) amplification and sequencing, and phylogenetic trees were generated based on maximum likelihood and Bayesian inference of phylogenies. Four Armillaria species were isolated: Armillaria gallica, A. mellea, A. ostoyae and A. tabescens. Armillaria gallica was most frequently isolated (40/51 isolates), but only from woodland trees. Armillaria mellea was isolated infrequently (3/51), from garden trees; A. tabescens was isolated infrequently (4/51), from trees either in a garden or a parkland location. Armillaria ostoyae (4/51 isolates) was coisolated with A. gallica, raising interesting questions about the synecology of these species, suggesting that more thorough investigations are required to detect all species present on a single host. The distribution of these Armillaria species in Britain and historical information about them on oak are described. It is concluded that further studies are necessary to determine the role of Armillaria in oak declines; A. gallica should be a key focus, but investigations should include polymicrobial interactions with other microorganisms, including other Armillaria species.

Understanding the molecular mechanisms underpinning the ecological success of plant pathogens is critical to develop strategies for controlling diseases and protecting crops. Recent observations have shown that plant pathogenic bacteria, particularly Pseudomonas, exist in a range of natural environments away from their natural plant host e.g., water courses, soil, non-host plants. This exposes them to a variety of eukaryotic predators such as nematodes, insects and amoebae present in the environment. Nematodes and amoeba in particular are bacterial predators while insect herbivores may act as indirect predators, ingesting bacteria on plant tissue. We therefore postulated that bacteria are probably under selective pressure to avoid or survive predation and have therefore developed appropriate coping mechanisms. We tested the hypothesis that plant pathogenic Pseudomonas syringae are able to cope with predation pressure and found that three pathovars show weak, but significant resistance or toxicity. To identify the gene systems that contribute to resistance or toxicity we applied a heterologous screening technique, called Rapid Virulence Annotation (RVA), for anti-predation and toxicity mechanisms. Three cosmid libraries for P. syringae pv. aesculi, pv. tomato and pv. phaseolicola, of approximately 2000 cosmids each, were screened in the susceptible/non-toxic bacterium Escherichia coli against nematode, amoebae and an insect. A number of potential conserved and unique genes were identified which included genes encoding haemolysins, biofilm formation, motility and adhesion. These data provide the first multi-pathovar comparative insight to how plant pathogens cope with different predation pressures and infection of an insect gut and provide a foundation for further study into the function of selected genes and their role in ecological success. All work was funded by the University of Reading.

Summary Food security depends on enhancing production and reducing loss to pests and pathogens. A promising alternative to agrochemicals is the use of plant growth-promoting rhizobacteria (PGPR), which are commonly associated with many, if not all, plant species. However, exploiting the benefits of PGPRs requires knowledge of bacterial function and an in-depth understanding of plant-bacteria associa- tions. Motility is important for colonization efficiency and microbial fitness in the plant environment, but the mechanisms employed by bacteria on and around plants are not well understood. We describe and investigate an atypical mode of motility in Pseu- domonas fluorescens SBW25 that was revealed only after flagellum production was eliminated by deletion of the master regulator fleQ. Our results suggest that this 'spidery spreading' is a type of surface motility. Transposon mutagenesis of SBW25ΔfleQ (SBW25Q) produced mutants, defective in viscosin production, and surface spreading was also abolished. Genetic analysis indicated growth-dependency, production of viscosin, and several potential regulatory and secretory systems involved in the spidery spreading phenotype. Moreover, viscosin both increases effi- ciency of surface spreading over the plant root and protects germinating seedlings in soil infected with the plant pathogen Pythium. Thus, viscosin could be a useful target for biotechnological development of plant growth promotion agents.

Microbial degradation is a major determinant of the fate of pollutants in the environment. para -Nitrophenol (PNP) is an EPA-listed priority pollutant with a wide environmental distribution, but little is known about the microorganisms that degrade it in the environment. We studied the diversity of active PNP-degrading bacterial populations in river water using a novel functional marker approach coupled with [ 13 C 6 ]PNP stable isotope probing (SIP). Culturing together with culture-independent terminal restriction fragment length polymorphism analysis of 16S rRNA gene amplicons identified Pseudomonas syringae to be the major driver of PNP degradation in river water microcosms. This was confirmed by SIP-pyrosequencing of amplified 16S rRNA. Similarly, functional gene analysis showed that degradation followed the Gram-negative bacterial pathway and involved pnpA from Pseudomonas spp. However, analysis of maleylacetate reductase (encoded by mar ), an enzyme common to late stages of both Gram-negative and Gram-positive bacterial PNP degradation pathways, identified a diverse assemblage of bacteria associated with PNP degradation, suggesting that mar has limited use as a specific marker of PNP biodegradation. Both the pnpA and mar genes were detected in a PNP-degrading isolate, P. syringae AKHD2, which was isolated from river water. Our results suggest that PNP-degrading cultures of Pseudomonas spp. are representative of environmental PNP-degrading populations.

Food security depends on enhancing production and reducing loss to pests and pathogens. A promising alternative to agrochemicals is the use of plant growth-promoting rhizobacteria (PGPR), which are commonly associated with many, if not all, plant species. However, exploiting the benefits of PGPRs requires knowledge of bacterial function and an in-depth understanding of plant-bacteria associations. Motility is important for colonization efficiency and microbial fitness in the plant environment, but the mechanisms employed by bacteria on and around plants are not well understood. We describe and investigate an atypical mode of motility in Pseudomonas fluorescens SBW25 that was revealed only after flagellum production was eliminated by deletion of the master regulator fleQ. Our results suggest that this 'spidery spreading' is a type of surface motility. Transposon mutagenesis of SBW25ΔfleQ (SBW25Q) produced mutants, defective in viscosin production, and surface spreading was also abolished. Genetic analysis indicated growth-dependency, production of viscosin, and several potential regulatory and secretory systems involved in the spidery spreading phenotype. Moreover, viscosin both increases efficiency of surface spreading over the plant root and protects germinating seedlings in soil infected with the plant pathogen Pythium. Thus, viscosin could be a useful target for biotechnological development of plant growth promotion agents.