144 results on '"G Woodman"'
Search Results
2. Works Well with Others: Gendered Mediation of Collaborative Leadership Skills
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Linda Trimble, Jennifer Curtin, Meagan Auer, Angelia Wagner, and V. K. G. Woodman
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Gender Studies ,Sociology and Political Science - Published
- 2022
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3. Representations of Political Leadership Qualities in News Coverage of Australian and Canadian Government Leaders
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V. K. G. Woodman, Jennifer Curtin, Angelia Wagner, Meagan Auer, and Linda Trimble
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Gender Studies ,Government ,0508 media and communications ,Sociology and Political Science ,Political science ,05 social sciences ,050602 political science & public administration ,050801 communication & media studies ,Political leadership ,Public administration ,0506 political science - Abstract
How do the media depict the leadership abilities of government leaders, and in what ways are these depictions gendered? Does the focus of leadership evaluations change over time, reflecting the increased presence of women in top leadership roles? To answer these questions, we examined news coverage of 22 subnational government leaders in Australia and Canada, countries in which a significant number of women have achieved the premiership at the state or provincial level since 2007. Analysis demonstrates that newly elected women and men leaders receive approximately the same number of leadership evaluations. Women are assessed based on the same criteria as men. All subnational political leaders are expected to be competent, intelligent, and levelheaded. That journalists prioritize experience and strength while downplaying honesty and compassion indicates a continued emphasis on “masculine” leadership norms in politics. Yet evaluations of new premiers have emphasized the traditionally “feminine” trait of collaboration as key to effective leadership and, over time, have given more attention to likability and emotions when covering male premiers. As our analysis reveals, media conceptualizations of political leadership competencies are slowly expanding in ways that make it easier for women to be seen as effective political leaders.
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- 2021
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4. Nuclease-Deficient Clustered Regularly Interspaced Short Palindromic Repeat-Based Approaches for In Vitro and In Vivo Gene Activation
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Kaiyue Ma, Monkol Lek, Keryn G. Woodman, and Angela Lek
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Regulation of gene expression ,0303 health sciences ,Nuclease ,Palindrome ,Computational biology ,Biology ,Genome ,In vitro ,03 medical and health sciences ,0302 clinical medicine ,In vivo ,030220 oncology & carcinogenesis ,Genetics ,Transcriptional regulation ,biology.protein ,Molecular Medicine ,CRISPR ,Molecular Biology ,030304 developmental biology - Abstract
Clustered regularly interspaced short palindromic repeat (CRISPR)-based technology has been adapted to achieve a wide range of genome modifications, including transcription regulation. The focus of...
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- 2021
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5. Invoking the idealized family to assess political leadership and legitimacy: news coverage of Australian and Canadian premiers
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Angelia Wagner, Linda Trimble, Meagan Auer, Jennifer Curtin, and V. K. G. Woodman
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Balance (metaphysics) ,Visual Arts and Performing Arts ,Communication ,05 social sciences ,050801 communication & media studies ,Political leadership ,Conventional wisdom ,16. Peace & justice ,humanities ,Gender Studies ,Dilemma ,Politics ,0508 media and communications ,050903 gender studies ,Political science ,Political economy ,0509 other social sciences ,health care economics and organizations ,Legitimacy - Abstract
Conventional wisdom holds that women politicians confront a parenting dilemma. Those with children are questioned about their ability to balance parental roles with political responsibilities, but ...
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- 2020
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6. Party system fragmentation, social cleavages, and social media: New Zealand’s 2017 election campaign on Facebook
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Justin Bonest Phillips and V. K. G. Woodman
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021110 strategic, defence & security studies ,Sociology and Political Science ,Political economy ,Political science ,05 social sciences ,050602 political science & public administration ,0211 other engineering and technologies ,Fragmentation (computing) ,Social media ,02 engineering and technology ,0506 political science - Abstract
Explorations of the predictive relationship between party system fragmentation and social cleavages beyond a single dimension remains an undeveloped area of research, one which rarely accounts for ...
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- 2020
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7. The meiotic LINC complex component KASH5 is an activating adaptor for cytoplasmic dynein
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Kirsten E.L. Garner, Anna Salter, Clinton K. Lau, Manickam Gurusaran, Cécile M. Villemant, Elizabeth P. Granger, Gavin McNee, Philip G. Woodman, Owen R. Davies, Brian E. Burke, and Victoria J. Allan
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Cell Biology ,macromolecular substances - Abstract
Cytoplasmic dynein-driven movement of chromosomes during prophase I of mammalian meiosis is essential for synapsis and genetic exchange. Dynein connects to chromosome telomeres via KASH5 and SUN1 or SUN2, which together span the nuclear envelope. Here, we show that KASH5 promotes dynein motility in vitro, and cytosolic KASH5 inhibits dynein’s interphase functions. KASH5 interacts with either dynein light intermediate chain (DYNC1LI1 or DYNC1LI2) via a conserved helix in the LIC C-terminal, and this region is also needed for dynein’s recruitment to other cellular membranes. KASH5’s N-terminal EF-hands are essential, as the interaction with dynein is disrupted by mutation of key calcium-binding residues, although it is not regulated by cellular calcium levels. Dynein can be recruited to KASH5 at the nuclear envelope independently of dynactin, while LIS1 is essential for dynactin incorporation into the KASH5-dynein complex. Altogether, we show that the trans-membrane protein KASH5 is an activating adaptor for dynein, and shed light on the hierarchy of assembly of KASH5-dynein-dynactin complexes.
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- 2022
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8. Increasing contribution of alluvial groundwater to riparian cottonwood forest water use through warm and dry summers
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Oscar R. Zimmerman, David W. Pearce, Samuel G. Woodman, Stewart B. Rood, and Lawrence B. Flanagan
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Atmospheric Science ,Global and Planetary Change ,Forestry ,Agronomy and Crop Science - Published
- 2023
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9. Forest defoliator outbreaks alter nutrient cycling in northern waters
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Erik J. S. Emilson, Andrew J. Tanentzap, Ronald E. Fournier, John M. Gunn, Sacha Khoury, James A. Rusak, Samuel G. Woodman, Woodman, Samuel [0000-0001-9725-5867], Khoury, Sacha [0000-0002-1980-5365], Fournier, Ronald E [0000-0001-5833-4677], Emilson, Erik JS [0000-0002-1516-9728], Rusak, James A [0000-0002-4939-6478], Tanentzap, Andrew [0000-0002-2883-1901], Apollo - University of Cambridge Repository, Woodman, Samuel G [0000-0001-9725-5867], and Tanentzap, Andrew J [0000-0002-2883-1901]
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0106 biological sciences ,Nutrient cycle ,Biogeochemical cycle ,Insecta ,010504 meteorology & atmospheric sciences ,Ecosystem ecology ,Climate Change ,Science ,General Physics and Astronomy ,Forests ,010603 evolutionary biology ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,Disease Outbreaks ,Element cycles ,Forest ecology ,parasitic diseases ,Temperate climate ,631/158/2459 ,Animals ,Biomass ,Ecosystem ,0105 earth and related environmental sciences ,Plant Diseases ,Ontario ,Biomass (ecology) ,Multidisciplinary ,Ecology ,article ,Boreal ecology ,Biogeochemistry ,631/158/2454 ,General Chemistry ,Nutrients ,15. Life on land ,704/158/2445 ,6. Clean water ,Carbon ,631/158/47/4112 ,Lakes ,Deciduous ,Boreal ,13. Climate action ,631/158/2449 ,Freshwater ecology ,Environmental science - Abstract
Insect defoliators alter biogeochemical cycles from land into receiving waters by consuming terrestrial biomass and releasing biolabile frass. Here, we related insect outbreaks to water chemistry across 12 boreal lake catchments over 32-years. We report, on average, 27% lower dissolved organic carbon (DOC) and 112% higher dissolved inorganic nitrogen (DIN) concentrations in lake waters when defoliators covered entire catchments and reduced leaf area. DOC reductions reached 32% when deciduous stands dominated. Within-year changes in DOC from insect outbreaks exceeded 86% of between-year trends across a larger dataset of 266 boreal and north temperate lakes from 1990 to 2016. Similarly, within-year increases in DIN from insect outbreaks exceeded local, between-year changes in DIN by 12-times, on average. As insect defoliator outbreaks occur at least every 5 years across a wider 439,661 km2 boreal ecozone of Ontario, we suggest they are an underappreciated driver of biogeochemical cycles in forest catchments of this region., Defoliating insects disrupt nutrient cycling of boreal catchments by redistributing carbon and nitrogen from forests to lakes. The resulting shift in lake biogeochemistry exceeds broader between-year trends observed across the boreal and north temperate region.
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- 2021
10. His domain protein tyrosine phosphatase and Rabaptin-5 couple endo-lysosomal sorting of EGFR with endosomal maturation
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Ling Zhang, Peristera Roboti, Sandra Taylor, Philip G. Woodman, and Gabrielle Parkinson
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animal structures ,ESCRT machinery ,Endosome ,Protein domain ,Vesicular Transport Proteins ,Endosomes ,macromolecular substances ,Protein tyrosine phosphatase ,GTPase ,Biology ,HD-PTP ,environment and public health ,Rabex-5 ,ESCRT ,Rab5 ,Protein Domains ,Multivesicular body ,Binding site ,Late endosome ,Endosomal Sorting Complexes Required for Transport ,Cell Biology ,PTPN23 ,Cell biology ,ErbB Receptors ,Protein Transport ,enzymes and coenzymes (carbohydrates) ,Rabaptin-5 ,Guanine nucleotide exchange factor ,Protein Tyrosine Phosphatases ,Lysosomes ,Research Article - Abstract
His domain protein tyrosine phosphatase (HD-PTP; also known as PTPN23) collaborates with endosomal sorting complexes required for transport (ESCRTs) to sort endosomal cargo into intralumenal vesicles, forming the multivesicular body (MVB). Completion of MVB sorting is accompanied by maturation of the endosome into a late endosome, an event that requires inactivation of the early endosomal GTPase Rab5 (herein referring to generically to all isoforms). Here, we show that HD-PTP links ESCRT function with endosomal maturation. HD-PTP depletion prevents MVB sorting, while also blocking cargo from exiting Rab5-rich endosomes. HD-PTP-depleted cells contain hyperphosphorylated Rabaptin-5 (also known as RABEP1), a cofactor for the Rab5 guanine nucleotide exchange factor Rabex-5 (also known as RABGEF1), although HD-PTP is unlikely to directly dephosphorylate Rabaptin-5. In addition, HD-PTP-depleted cells exhibit Rabaptin-5-dependent hyperactivation of Rab5. HD-PTP binds directly to Rabaptin-5, between its Rabex-5- and Rab5-binding domains. This binding reaction involves the ESCRT-0/ESCRT-III binding site in HD-PTP, which is competed for by an ESCRT-III peptide. Jointly, these findings indicate that HD-PTP may alternatively scaffold ESCRTs and modulate Rabex-5–Rabaptin-5 activity, thereby helping to coordinate the completion of MVB sorting with endosomal maturation., Summary: Sorting of endocytic cargo to the multivesicular body is accompanied by endosomal maturation. Here, we provide a potential mechanism by which these two processes are linked.
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- 2021
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11. Perinatal iron deficiency causes sex-dependent alterations in renal retinoic acid signaling and nephrogenesis
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Andrew G. Woodman, Richard L. Mah, Samantha Kinney, Claudia D. Holody, Alyssa R. Wiedemeyer, Ronan M.N. Noble, Robin D. Clugston, and Stephane L. Bourque
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Nutrition and Dietetics ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Molecular Biology ,Biochemistry - Abstract
Long-term alterations in kidney structure and function have been observed in offspring exposed to perinatal stressors such as iron deficiency (ID), albeit the mechanisms underlying these changes remain unclear. Here, we assessed how perinatal ID alters renal vitamin A metabolism, an important contributor to nephrogenesis, in the developing kidney. Pregnant Sprague Dawley rats were fed either an iron-restricted or -replete diet throughout gestation, and offspring were studied on postnatal day (PD)1 and 28. Maternal iron restriction results in reduced renal retinoid concentrations in male and female offspring on PD1 (P=.005). Nephron endowment was reduced by 21% in male perinatal ID offspring (P.001), whereas it was unaffected in perinatal ID females. Perinatal ID resulted in sex-dependent changes in kidney retinoid synthesis and metabolism, whereby male offspring exhibited increased expression of Raldh2 and Rar/Rxr isoforms, while females exhibited unchanged or decreased expression (all interaction P.05). Male perinatal ID offspring exhibit sex-specific enhancements of retinoic acid pathway signaling components on PD1, including Gdnf (P.01) and Ctnnb1 (P.01), albeit robust upregulation of RA transcriptional target Stra6 was observed in both sexes (P=.006). On PD28, perinatal ID resulted in elevated renal retinoid concentrations (P=.02) coinciding with enhanced expression of Raldh2 (P=.04), but not any Rar isoform or Rxr. Further, perinatal ID resulted in robust upregulation of Gdnf, Ret, Ctnnb1, associated with further increases in both Cxcr4 and Stra6 (all P.01) at PD28. Together, these data suggest perinatal ID results in sustained sex-dependent perturbations in vitamin A metabolism, which likely underlie sex-specific reductions in nephron endowment.
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- 2021
12. Microplastics and anthropogenic fibre concentrations in lakes reflect surrounding land use
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Samuel Cottingham, Jérémy Fonvielle, Christian M. Pichler, Andrew J. Tanentzap, Erwin Reisner, Samuel G. Woodman, Laurent Lebreton, Lucy M. Walker, Danai Kontou, Isobel Riley, Tanentzap, Andrew [0000-0002-2883-1901], Cottingham, Samuel [0000-0002-6360-8326], Fonvielle, Jérémy [0000-0002-8077-2419], Walker, Lucy M [0000-0001-5488-0443], Woodman, Samuel [0000-0001-9725-5867], Kontou, Danai [0000-0002-0773-9540], Pichler, Christian [0000-0001-7686-7215], Reisner, Erwin [0000-0002-7781-1616], Apollo - University of Cambridge Repository, Tanentzap, Andrew J. [0000-0002-2883-1901], Walker, Lucy M. [0000-0001-5488-0443], Woodman, Samuel G. [0000-0001-9725-5867], and Pichler, Christian M. [0000-0001-7686-7215]
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Economics ,Microplastics ,Marine and Aquatic Sciences ,Fresh Water ,Wastewater ,010501 environmental sciences ,01 natural sciences ,Geographical Locations ,Short Reports ,Land Use ,Water Pollutants ,Biology (General) ,Water pollution ,media_common ,0303 health sciences ,Geography ,General Neuroscience ,Pollution ,6. Clean water ,Europe ,General Agricultural and Biological Sciences ,Plastics ,Freshwater Environments ,QH301-705.5 ,Environmental remediation ,media_common.quotation_subject ,Ecology and environmental sciences ,Biology ,Human Geography ,General Biochemistry, Genetics and Molecular Biology ,Social sciences ,03 medical and health sciences ,Hydrology (agriculture) ,Rivers ,Surface Water ,Ecosystem ,030304 developmental biology ,0105 earth and related environmental sciences ,Hydrology ,General Immunology and Microbiology ,Land use ,Water Pollution ,Aquatic Environments ,Bodies of Water ,Debris ,Economic Analysis ,Lakes ,Earth sciences ,13. Climate action ,Particulate Matter ,People and places ,Surface water - Abstract
Pollution from microplastics and anthropogenic fibres threatens lakes, but we know little about what factors predict its accumulation. Lakes may be especially contaminated because of long water retention times and proximity to pollution sources. Here, we surveyed anthropogenic microparticles, i.e., microplastics and anthropogenic fibres, in surface waters of 67 European lakes spanning 30° of latitude and large environmental gradients. By collating data from >2,100 published net tows, we found that microparticle concentrations in our field survey were higher than previously reported in lakes and comparable to rivers and oceans. We then related microparticle concentrations in our field survey to surrounding land use, water chemistry, and plastic emissions to sites estimated from local hydrology, population density, and waste production. Microparticle concentrations in European lakes quadrupled as both estimated mismanaged waste inputs and wastewater treatment loads increased in catchments. Concentrations decreased by 2 and 5 times over the range of surrounding forest cover and potential in-lake biodegradation, respectively. As anthropogenic debris continues to pollute the environment, our data will help contextualise future work, and our models can inform control and remediation efforts., Pollution from microplastics and anthropogenic fibres threatens lakes, but we know little about what factors predict its accumulation. This study uses a survey of 67 European lakes spanning 30° of latitude to show that economic and environmental indicators predict the pollution of lakes by anthropogenic microparticles.
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- 2021
13. Endosomal recycling tubule scission and integrin recycling involve the membrane curvature-supporting protein LITAF
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Martin Lowe, Wenxia Qin, Rebecca Yarwood, Philip G. Woodman, Lydia Wunderley, and Ling Zhang
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Lipopolysaccharides ,Integrins ,ESCRT machinery ,Endosome ,Integrin ,Cell ,Endosomes ,LITAF ,SNX ,03 medical and health sciences ,0302 clinical medicine ,Charcot-Marie-Tooth Disease ,medicine ,Humans ,030304 developmental biology ,0303 health sciences ,biology ,Membrane Proteins ,Nuclear Proteins ,Cell migration ,Cell Biology ,Cell biology ,Tubule ,medicine.anatomical_structure ,Membrane ,Membrane protein ,Membrane curvature ,Rab11 ,Charcot Marie Tooth ,biology.protein ,Recycling endosome ,EHD ,030217 neurology & neurosurgery ,Transcription Factors ,Research Article - Abstract
Recycling to the cell surface requires the scission of tubular membrane intermediates emanating from endosomes. Here, we identify the monotopic membrane protein LPS-induced TNF-activating factor (LITAF) and the related protein cell death involved p53 target 1 (CDIP1) as novel membrane curvature proteins that contribute to recycling tubule scission. Recombinant LITAF supports high membrane curvature, shown by its ability to reduce proteoliposome size. The membrane domains of LITAF and CDIP1 partition strongly into ∼50 nm diameter tubules labelled with the recycling markers Pacsin2, ARF6 and SNX1, and the recycling cargoes MHC class I and CD59. Partitioning of LITAF into tubules is impaired by mutations linked to Charcot Marie Tooth disease type 1C. Meanwhile, co-depletion of LITAF and CDIP1 results in the expansion of tubular recycling compartments and stabilised Rab11 tubules, pointing to a function for LITAF and CDIP1 in membrane scission. Consistent with this, co-depletion of LITAF and CDIP1 impairs integrin recycling and cell migration., Summary: LITAF is an endosomal monotopic membrane protein that is mutated in Charcot Marie Tooth disease type 1C. We show that LITAF is important for endosomal recycling through supporting the scission of recycling tubules.
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- 2021
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14. Gender novelty and personalized news coverage in Australia and Canada
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Meagan Auer, Linda Trimble, Angelia Wagner, Bethan Owens, V. K. G. Woodman, and Jennifer Curtin
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Government ,Sociology and Political Science ,05 social sciences ,Novelty ,050801 communication & media studies ,Advertising ,16. Peace & justice ,0506 political science ,Personalization ,0508 media and communications ,5. Gender equality ,Political science ,Political Science and International Relations ,050602 political science & public administration - Abstract
Are female government leaders more likely than their male counterparts to see their gendered identities and personal lives profiled in news coverage of their ascents? Are non-novel women leaders—those who are the second in their jurisdiction to achieve the top political job—less likely to experience media personalization than did the women who preceded them in office? By analyzing newspaper coverage of 20 Australian and Canadian premiers, ten women and their immediate male predecessors, our study establishes that female premiers were more extensively personalized in news coverage than were male premiers, particularly in the Australian context. However, gender novelty and other factors proved significant. The proposition that an increased presence of women in leadership roles diminishes the salience of private lives and personal characteristics is supported by our study, suggesting that gender stereotyping of female political leaders will decrease over time as more women exercise political power.
- Published
- 2019
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15. The effects of diltiazem on growth, reproduction, energy reserves, and calcium-dependent physiology in Daphnia magna
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Charles S. Wong, Dylan Steinkey, Rylan J Steinkey, Ebrahim Lari, Kim H. Luong, Samuel G. Woodman, and Greg G. Pyle
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Environmental Engineering ,medicine.drug_class ,Health, Toxicology and Mutagenesis ,0208 environmental biotechnology ,Daphnia magna ,Population ,02 engineering and technology ,Calcium channel blocker ,010501 environmental sciences ,Biology ,01 natural sciences ,Excretion ,Diltiazem ,Animal science ,Heart Rate ,Heart rate ,Respiration ,medicine ,Animals ,Environmental Chemistry ,education ,0105 earth and related environmental sciences ,education.field_of_study ,Reproduction ,Public Health, Environmental and Occupational Health ,Aquatic animal ,Feeding Behavior ,General Medicine ,General Chemistry ,biology.organism_classification ,Pollution ,6. Clean water ,3. Good health ,020801 environmental engineering ,Daphnia ,Calcium ,Water Pollutants, Chemical ,medicine.drug - Abstract
With the growth of both the pharmaceutical industry and the human population and longevity, more drugs are used and processed each day. Inevitably, these pharmaceuticals enter wastewater through human excretion and improper disposal of leftovers. One such medication, diltiazem, a calcium channel blocker, is of importance due to its widespread consumption, and prevalence in aquatic environments. To study the sub-lethal effects of diltiazem on aquatic animals, we investigated its impacts no feeding behaviour, heart rate, respiration, growth, and reproduction of a bioindicator species, Daphnia magna. When exposed to environmentally relevant concentrations, D. magna increased their heart rate by 12% and oxygen consumption by 48%. However, exposure did not have any effects on thoracic limb movement frequency or peristalsis (i.e. feeding behaviour). Individuals exposed to diltiazem for a longer duration (16 days) showed a 44% decrease in lipid reserves and produced between 17 and 28% fewer neonates which were 10–12% larger. Our study demonstrated that exposure to diltiazem creates an energy imbalance in D. magna which could, in the long run, influence their populations.
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- 2019
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16. Perinatal iron deficiency combined with a high salt diet in adulthood causes sex‐dependent vascular dysfunction in rats
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Ronan M. N. Noble, Sareh Panahi, Ferrante S. Gragasin, Stephane L. Bourque, and Andrew G. Woodman
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Male ,0301 basic medicine ,medicine.medical_specialty ,Endothelium ,Physiology ,Offspring ,Vasodilator Agents ,Vasodilation ,Nitric Oxide ,Nitric oxide ,Rats, Sprague-Dawley ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Pregnancy ,Internal medicine ,medicine ,Animals ,Vasoconstrictor Agents ,Vascular Diseases ,Sodium Chloride, Dietary ,2. Zero hunger ,Anemia, Iron-Deficiency ,Electrical impedance myography ,business.industry ,Superoxide ,Parturition ,Iron deficiency ,medicine.disease ,Diet ,Mesenteric Arteries ,Rats ,030104 developmental biology ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Female ,Endothelium, Vascular ,business ,030217 neurology & neurosurgery - Abstract
Key points Perinatal iron deficiency causes changes in offspring mesenteric artery function in adulthood, particularly in males, which can be exacerbated by chronic intake of a high salt diet. Perinatal iron deficient male offspring exhibit enhanced conversion of big endothelin-1 to active endothelin-1, coinciding with decreased nitric oxide levels. Perinatal iron deficient male offspring have reduced nitric oxide-mediated endothelial-dependent vasodilatation coincident with increased vascular superoxide levels following consumption of a high salt diet. Perinatal iron deficiency has no apparent effects on vascular function in female offspring, even when fed a high salt diet. These results help us better understand underlying vascular mechanisms contributing to increased cardiovascular risk from perinatal stressors such as iron deficiency. Abstract Pre- and immediate postnatal stressors, such as iron deficiency, can alter developmental trajectories and predispose offspring to long-term cardiovascular dysfunction. Here, we investigated the impact of perinatal iron deficiency on vascular function in the adult offspring, and whether these long-term effects were exacerbated by prolonged consumption of a high salt diet in adulthood. Female Sprague Dawley rats were fed either an iron-restricted or -replete diet prior to and throughout pregnancy. Six weeks prior to experimentation at 6 months of age, adult offspring were fed either a normal or high salt diet. Mesenteric artery responses to vasodilators and vasoconstrictors were assessed ex vivo by wire myography. Male perinatal iron deficient offspring exhibited decreased reliance on nitric oxide with methacholine-induced vasodilatation (interaction P = 0.03), coincident with increased superoxide levels when fed the high salt diet (P = 0.01). Male perinatal iron deficient offspring exhibit enhanced big endothelin-1 conversion to active endothelin-1 (P = 0.02) concomitant with decreased nitric oxide levels (P = 0.005). Female offspring vascular function was unaffected by perinatal iron deficiency, albeit the high salt diet was associated with impaired vasodilation and decreased nitric oxide production (P = 0.02), particularly in the perinatal iron deficient offspring. These findings implicate vascular dysfunction in the sex-specific programming of cardiovascular dysfunction in the offspring by perinatal iron deficiency.
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- 2019
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17. Environmental control of Pub1 (NEDD4 family E3 ligase) in S. pombe is regulated by TORC2 and Gsk3
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Janni Petersen, Philip G. Woodman, Tingting Wang, and Sean J. Humphrey
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biology ,Endocytosis ,biology.organism_classification ,Ubiquitin ligase ,Cell biology ,WW domain ,chemistry.chemical_compound ,chemistry ,Schizosaccharomyces pombe ,biology.protein ,Phosphorylation ,TOR complex ,Amino acid transporter ,Canavanine - Abstract
Cells respond to changing nutrient environments by adjusting the abundance of surface nutrient transporters and receptors. This can be achieved by modulating ubiquitin-dependent endocytosis, which in part is regulated by the NEDD4 family of E3 ligases. Here we report novel regulation of Pub1, a fission yeast Schizosaccharomyces pombe member of the NEDD4-family of E3 ligases. We show that nitrogen stress inhibits Pub1 function, thereby increasing the abundance of the amino acid transporter Aat1 at the plasma membrane and enhancing sensitivity to the toxic arginine analogue canavanine. We show that TOR complex 2 (TORC2) signalling negatively regulates Pub1, thus TORC2 mutants under nutrient stress have decreased Aat1 at the plasma membrane and are resistant to canavanine. Inhibition of TORC2 signalling increases Pub1 phosphorylation, and this is dependent on Gsk3 activity. Addition of the Tor inhibitor Torin1 increases phosphorylation of Pub1 at serine 199 (S199) by 2.5-fold, and Pub1 protein levels in S199A phospho-ablated mutants are reduced. S199 is conserved in NEDD4 and is located immediately upstream of a WW domain required for protein interaction. Together, we describe how the major TORC2 nutrient-sensing signalling network regulates environmental control of Pub1 to modulate the abundance of nutrient transporters.
- Published
- 2021
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18. Nuclease-Deficient Clustered Regularly Interspaced Short Palindromic Repeat-Based Approaches for
- Author
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Angela, Lek, Kaiyue, Ma, Keryn G, Woodman, and Monkol, Lek
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Gene Editing ,Transcriptional Activation ,Clustered Regularly Interspaced Short Palindromic Repeats ,CRISPR-Cas Systems ,Endonucleases - Abstract
Clustered regularly interspaced short palindromic repeat (CRISPR)-based technology has been adapted to achieve a wide range of genome modifications, including transcription regulation. The focus of this review is on the application of CRISPR-based platforms such as nuclease-deficient Cas9 and Cas12a, to achieve targeted gene activation. We review studies to date that have used CRISPR-based activation technology for the elucidation of biological mechanism and disease correction, as well as its application in genetic screens as a powerful tool for high-throughput genotype-phenotype mapping. In addition to our synthesis and critical analysis of published studies, we explore key considerations for the potential clinical translation of CRISPR-based activation technology.
- Published
- 2021
19. Resveratrol Promotes Hypertrophy in Wildtype Skeletal Muscle and Reduces Muscle Necrosis and Gene Expression of Inflammatory Markers in
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Shireen R. Lamandé, Chantal A. Coles, Keryn G. Woodman, and Jason D. White
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muscular dystrophy ,Necrosis ,muscle ,Duchenne muscular dystrophy ,Pharmaceutical Science ,Inflammation ,Pharmacology ,Resveratrol ,resveratrol ,Article ,Analytical Chemistry ,Muscle hypertrophy ,lcsh:QD241-441 ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,lcsh:Organic chemistry ,Drug Discovery ,medicine ,Animals ,Physical and Theoretical Chemistry ,Muscular dystrophy ,Muscle, Skeletal ,030304 developmental biology ,nutraceuticals ,0303 health sciences ,biology ,Organic Chemistry ,duchenne ,Skeletal muscle ,Hypertrophy ,medicine.disease ,medicine.anatomical_structure ,chemistry ,Gene Expression Regulation ,Chemistry (miscellaneous) ,030220 oncology & carcinogenesis ,biology.protein ,Molecular Medicine ,medicine.symptom ,Dystrophin ,mdx ,Biomarkers - Abstract
Duchenne muscular dystrophy (DMD) is a progressive fatal neuromuscular disorder with no cure. Therapies to restore dystrophin deficiency have been approved in some jurisdictions but long-term effectiveness is yet to be established. There is a need to develop alternative strategies to treat DMD. Resveratrol is a nutraceutical with anti-inflammatory properties. Previous studies have shown high doses (100–400 mg/kg bodyweight/day) benefit mdx mice. We treated 4-week-old mdx and wildtype mice with a lower dose of resveratrol (5 mg/kg bodyweight/day) for 15 weeks. Voluntary exercise was used to test if a lower dosage than previously tested could reduce exercise-induced damage where a greater inflammatory infiltrate is present. We found resveratrol promoted skeletal muscle hypertrophy in wildtype mice. In dystrophic muscle, resveratrol reduced exercise-induced muscle necrosis. Gene expression of immune cell markers, CD86 and CD163 were reduced, however, signalling targets associated with resveratrol’s mechanism of action including Sirt1 and NF-κB were unchanged. In conclusion, a lower dose of resveratrol compared to the dosage used by other studies reduced necrosis and gene expression of inflammatory cell markers in dystrophic muscle suggesting it as a therapeutic candidate for treating DMD.
- Published
- 2020
20. Membrane trafficking in health and disease
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Philip G. Woodman, John Hellicar, Martin Lowe, and Rebecca Yarwood
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Neuroscience (miscellaneous) ,lcsh:Medicine ,Medicine (miscellaneous) ,Disease ,Biology ,General Biochemistry, Genetics and Molecular Biology ,At A Glance ,Immunology and Microbiology (miscellaneous) ,lcsh:Pathology ,medicine ,Animals ,Humans ,Genetic disorder ,Secretory pathway ,Secretory Pathway ,Membrane Traffic ,Vesicle ,lcsh:R ,Cell Membrane ,medicine.disease ,Membrane traffic ,Endocytosis ,Cell biology ,Membrane ,Health ,Endocytic pathway ,Function (biology) ,lcsh:RB1-214 - Abstract
Membrane trafficking pathways are essential for the viability and growth of cells, and play a major role in the interaction of cells with their environment. In this At a Glance article and accompanying poster, we outline the major cellular trafficking pathways and discuss how defects in the function of the molecular machinery that mediates this transport lead to various diseases in humans. We also briefly discuss possible therapeutic approaches that may be used in the future treatment of trafficking-based disorders., Summary: This At a Glance article and poster summarise the major intracellular membrane trafficking pathways and associated molecular machineries, and describe how defects in these give rise to disease in humans.
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- 2020
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21. Network Organisation and the Dynamics of Tubules in the Endoplasmic Reticulum
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Hannah T. Perkins, Pierre Ducluzaux, Victoria J. Allan, Philip G. Woodman, and Thomas A. Waigh
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Persistence length ,0303 health sciences ,Subcellular organelle ,Chemistry ,Endoplasmic reticulum ,Dynamics (mechanics) ,Cell ,01 natural sciences ,03 medical and health sciences ,Tubule ,medicine.anatomical_structure ,Microtubule ,0103 physical sciences ,Organelle ,Biophysics ,medicine ,010306 general physics ,030304 developmental biology - Abstract
The endoplasmic reticulum (ER) is a eukaryotic subcellular organelle composed of tubules and sheet-like areas of membrane connected at junctions. The tubule network is highly dynamic and undergoes rapid and continual rearrangement. There are currently few tools to evaluate network organisation and dynamics. We quantified ER network organisation in Vero and MRC5 cells, and developed a classification system for ER dynamics in live cells. The persistence length, tubule length, junction coordination number and angles of the network were quantified. Hallmarks of imbalances in ER tension, indications of interactions with microtubules and other subcellular organelles, and active reorganisation and dynamics were observed. Live cell ER tubule dynamics were classified using a Gaussian mixture model, defining tubule motion as active or thermal and conformational phase space analysis allowed this classification to be refined by tubule curvature states.STATEMENT OF SIGNIFICANCEThe endoplasmic reticulum (ER), a subcellular organelle, is an underexplored real-world example of active matter. Many processes essential to cell survival are performed by the ER, the efficacy of which may depend on its organisation and dynamics. Abnormal ER morphology is linked to diseases such as hereditary spastic paraplegias and it is possible that the dynamics are also implicated. Therefore, analysing the ER network in normal cells is important for the understanding of disease-related alterations. In this work, we outline the first thorough quantification methods for determining ER organisation and dynamics, deducing that tubule motion has a binary classification as active or thermal. Active reorganisation and dynamics along with indications of tension imbalances and membrane contact sites were observed.
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- 2020
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22. Effects of gemfibrozil on the growth, reproduction, and energy stores of Daphnia magna in the presence of varying food concentrations
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Greg G. Pyle, Samuel G. Woodman, Dylan Steinkey, Charles S. Wong, Ebrahim Lari, and Kim H. Luong
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0301 basic medicine ,Environmental Engineering ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,Daphnia magna ,010501 environmental sciences ,01 natural sciences ,Daphnia ,Toxicology ,03 medical and health sciences ,Increased lipid ,Animal science ,medicine ,Animals ,Environmental Chemistry ,Gemfibrozil ,Effluent ,0105 earth and related environmental sciences ,media_common ,biology ,Chemistry ,Reproduction ,Aquatic ecosystem ,Public Health, Environmental and Occupational Health ,General Medicine ,General Chemistry ,biology.organism_classification ,Pollution ,6. Clean water ,030104 developmental biology ,Wastewater ,Food ,Energy Metabolism ,Water Pollutants, Chemical ,medicine.drug - Abstract
Gemfibrozil, a common lipid regulator, enters aquatic environments through treated municipal wastewater effluent that fails to remove it completely from effluent streams. When exposed to gemfibrozil concentrations of 50, 500, 5,000, and 50,000 ng L−1, Daphnia magna showed increased lipid reserves by 14–21% (significant at 500 ng L−1), increased length by 9–13% (significant at 50 ng L−1), increased mass by 6–13% (significant at 50 ng L−1) and increased neonate production by 57–74% (significant at 50 ng L−1). Gemfibrozil-exposed Daphnia held under conditions where food availability was low, grew and reproduced as well as those in the control. Taken together, these results suggest that gemfibrozil exposure within environmentally relevant concentration ranges is not toxic to Daphnia magna but has the potential to be beneficial to the species under these conditions.
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- 2018
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23. Expression profiling in exercised mdx suggests a role for extracellular proteins in the dystrophic muscle immune response
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Christopher Kintakas, Adam T. Piers, Keryn G. Woodman, Tracie Webster, Chantal A. Coles, Su L Touslon, Gayle M. Smythe, Lavinia Gordon, Shireen R. Lamandé, Liam C. Hunt, and Jason D. White
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musculoskeletal diseases ,Male ,congenital, hereditary, and neonatal diseases and abnormalities ,mdx mouse ,Duchenne muscular dystrophy ,Inflammation ,Biology ,Motor Activity ,Mice ,Gene expression ,Genetics ,medicine ,Animals ,Humans ,Muscular dystrophy ,Muscle, Skeletal ,Molecular Biology ,Genetics (clinical) ,Regulation of gene expression ,Extracellular Matrix Proteins ,Gene Expression Profiling ,Immunity ,General Medicine ,medicine.disease ,Cell biology ,Gene expression profiling ,Muscular Dystrophy, Duchenne ,Gene Expression Regulation ,biology.protein ,Mice, Inbred mdx ,medicine.symptom ,Dystrophin - Abstract
Duchenne muscular dystrophy (DMD) is a lethal muscle wasting disorder caused by mutations in the DMD gene that lead to the absence or severe reduction of dystrophin protein in muscle. The mdx mouse, also dystrophin deficient, is the model most widely used to study the pathology and test potential therapies, but the phenotype is milder than human DMD. This limits the magnitude and range of histological damage parameters and molecular changes that can be measured in pre-clinical drug testing. We used three weeks of voluntary wheel running to exacerbate the mdx phenotype. In mdx mice voluntary exercise increased the amount of damaged necrotic tissue and macrophage infiltration. Global gene expression profiling revealed that exercise induced additional and larger gene expression changes in mdx mice and the pathways most impacted by exercise were all related to immune function or cell-extracellular matrix (ECM) interactions. When we compared the matrisome and inflammation genes that were dysregulated in mdx with those commonly differentially expressed in DMD, we found the exercised mdx molecular signature more closely resembled that of DMD. These gene expression changes in the exercised mdx model thus provide more scope to assess the effects of pre-clinical treatments. Our gene profiling comparisons also highlighted upregulation of extracellular matrix proteins involved in innate immunity pathways, proteases that can release them, and downstream receptors and signalling molecules in exercised mdx and DMD, suggesting that the ECM could be a major source of pro-inflammatory molecules that trigger and maintain the immune response in dystrophic muscle.
- Published
- 2019
24. Characterization of the EF-Hand Calcium-Binding Domains of Human Plastins
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Oleg, Khassan, Katharine V, Jensen, Andrew G, Woodman, Hans J, Vogel, and Hiroaki, Ishida
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Binding Sites ,Membrane Glycoproteins ,Calmodulin ,Sequence Homology, Amino Acid ,Microfilament Proteins ,Humans ,Calcium ,EF Hand Motifs ,Nuclear Magnetic Resonance, Biomolecular ,Protein Binding - Abstract
The three human plastins (L-plastin, T-plastin, and I-plastin) are important regulatory Ca
- Published
- 2019
25. Effects of sertraline on behavioral indices of crayfish Orconectes virilis
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William A. Dew, Samuel G. Woodman, Dylan Steinkey, Bryan W. Brooks, Greg G. Pyle, and S. R. Burket
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0106 biological sciences ,medicine.medical_specialty ,Health, Toxicology and Mutagenesis ,Orconectes virilis ,Zoology ,Context (language use) ,010501 environmental sciences ,Biology ,010603 evolutionary biology ,01 natural sciences ,Internal medicine ,medicine ,Predator ,0105 earth and related environmental sciences ,Sertraline ,musculoskeletal, neural, and ocular physiology ,Public Health, Environmental and Occupational Health ,Aquatic animal ,General Medicine ,biology.organism_classification ,Crayfish ,Pollution ,Endocrinology ,nervous system ,Antidepressant ,Serotonin ,medicine.drug - Abstract
Sertraline, a selective serotonin re-uptake inhibitor, is a widely prescribed antidepressant in North America. Though sertraline is continuously released from wastewater treatment plant discharge to surface water, effects of aqueous exposure of sertraline on behavioral responses of aquatic animals are largely unknown. Our study explored the effects of aqueous exposures of sertraline on antagonistic bouts and predator response behavior of virile crayfish (Orconectes virilis). Crayfish were either exposed or not exposed to waterborne sertraline and then size-matched for paired antagonistic bouts to determine if sertraline affects the aggression of each crayfish. We investigated the effect of sertraline on responses to visual predator cues and determined whether sertraline acts as an olfactory cue. Our results demonstrate that crayfish exposed to sertraline are more aggressive when paired with control crayfish but, when sertraline crayfish are paired, there is no change in aggression. Attraction response to sertraline in behavioral mazes was also observed, which may represent a maladaptive behavior, and in an ecological context may result in crayfish moving to areas with elevated levels of sertraline. However, aqueous exposure to sertraline had no effect on predator responses of crayfish. Future research is warranted to determine whether such medicine released in wastewater treatment plant effluents produces long-term ecologically important consequences for aquatic animals residing in urbanized aquatic ecosystems.
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- 2016
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26. Rapid changes in water hardness and alkalinity: Calcite formation is lethal to Daphnia magna
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Cindy Meays, Sarah J. Bogart, Dylan Steinkey, Samuel G. Woodman, and Greg G. Pyle
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0106 biological sciences ,Environmental Engineering ,Daphnia magna ,Alkalinity ,Fresh Water ,010501 environmental sciences ,01 natural sciences ,Daphnia ,Calcium Carbonate ,chemistry.chemical_compound ,Water column ,Animals ,Environmental Chemistry ,Waste Management and Disposal ,Effluent ,0105 earth and related environmental sciences ,Calcite ,Minerals ,biology ,Chemistry ,010604 marine biology & hydrobiology ,Aquatic ecosystem ,Hydrogen-Ion Concentration ,biology.organism_classification ,Pollution ,Calcium carbonate ,Environmental chemistry ,Water Pollutants, Chemical ,Environmental Monitoring - Abstract
There is growing concern that freshwater ecosystems may be negatively affected by ever-increasing anthropogenic inputs of extremely hard, highly alkaline effluent containing large quantities of Ca(2+), Mg(2+), CO3(2-), and HCO3(-) ions. In this study, the toxicity of rapid and extreme shifts in water hardness (38-600mg/L as CaCO3) and alkalinity (30-420mg/L as CaCO3) to Daphnia magna was tested, both independently and in combination. Within these ranges, where no precipitation event occurred, shifts in water hardness and/or alkalinity were not toxic to D. magna. In contrast, 98-100% of D. magna died within 96h after exposure to 600mg/L as CaCO3 water hardness and 420mg/L as CaCO3 alkalinity (LT50 of 60h with a 95% CI of 54.2-66.0h). In this treatment, a CaCO3 (calcite) precipitate formed in the water column which was ingested by and thoroughly coated the D. magna. Calcite collected from a mining impacted stream contained embedded organisms, suggesting field streams may also experience similar conditions and possibly increased mortality as observed in the lab tests. Although further investigation is required to determine the exact fate of aquatic organisms exposed to rapid calcite precipitation in the field, we caution that negative effects may occur more quickly or at lower concentrations of water hardness and alkalinity in which we observed effects in D. magna, because some species, such as aquatic insects, are more sensitive than cladocerans to changes in ionic strength. Our results provide evidence that both calcite precipitation and the major ion balance of waters should be managed in industrially affected ecosystems and we support the development of a hardness+alkalinity guideline for the protection of aquatic life.
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- 2016
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27. Characterization of the EF-Hand Calcium-Binding Domains of Human Plastins
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Katharine V. Jensen, Hans J. Vogel, Andrew G. Woodman, Hiroaki Ishida, and Oleg Khassan
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0301 basic medicine ,Calmodulin ,biology ,EF hand ,chemistry.chemical_element ,macromolecular substances ,Nuclear magnetic resonance spectroscopy ,Calcium ,Actin cytoskeleton ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,chemistry ,030220 oncology & carcinogenesis ,Fimbrin ,biology.protein ,Biophysics ,Linker ,Actin - Abstract
The three human plastins (L-plastin, T-plastin, and I-plastin) are important regulatory Ca2+-binding proteins that belong to the family of actin-binding proteins. Plastins are involved in the regulation of the actin cytoskeleton as well as the cross-linking of actin filaments. In addition to four calponin-homology (CH) domains, all three plastins contain two N-terminal EF-hand Ca2+-binding motifs which together are homologous to a single lobe of the well-known calcium-regulatory protein calmodulin. This part of the protein allows for the regulation of the actin bundling activity in response to elevated calcium levels. In this protocol, we describe the purification of the EF-hand headpiece domains of all three plastins, as well as SPR studies, ITC studies, and NMR interaction studies with different peptides and calcium. In combination, these three experimental techniques provide detailed insights into a novel regulatory mechanism, involving the linker region between the EF-hand domain and the first CH domain of the plastins.
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- 2019
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28. Maternal Iron Deficiency Elicits Changes in Placental Development and Alters Fetal Growth Trajectories
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Stephen J. Renaud, Hannah Roberts, Andrew G. Woodman, and Stephane L. Bourque
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medicine.medical_specialty ,Endocrinology ,Internal medicine ,Genetics ,medicine ,Fetal growth ,Iron deficiency ,Biology ,medicine.disease ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2020
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29. ESCRT-III accumulates in micronuclei with ruptured nuclear envelopes
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Alexa J. Cleasby, Emma Grant, Philip G. Woodman, Alessandra Pisciottani, Cinzia Rinaldo, Barbara Ciani, Willan J, Flavia Stefani, Helen E. Bryant, and Neftali Flores-Rodriguez
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Genome instability ,0303 health sciences ,education.field_of_study ,Chemistry ,Population ,macromolecular substances ,complex mixtures ,ESCRT ,Cell biology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Cancer cell ,Micronucleus test ,Interphase ,education ,Mitosis ,DNA ,030304 developmental biology - Abstract
1.AbstractMicronuclei represent the cellular attempt to compartmentalize DNA to maintain genomic integrity threatened by mitotic errors and genotoxic events. Micronuclei show aberrant nuclear envelopes that collapse, generating damaged DNA and promoting complex genome alterations. However, ruptured micronuclei also provide a pool of cytosolic DNA that stimulates anti-tumour immunity, revealing the complexity of micronuclei impact on tumour progression.The ESCRT-III complex ensures nuclear envelope (NE) resealing during late mitosis and NE repair in interphase. Therefore, ESCRT-III activity maybe crucial for maintaining the integrity of other genomic structures enclosed by a nuclear envelope. ESCRT-III activity at the nuclear envelope is coordinated by the subunit CHMP7.We show that CHMP7 and ESCRT-III protects against the genomic instability associated with micronuclei formation. Loss of ESCRT-III activity increases the population of micronuclei with ruptured nuclear envelopes, in interphase cells. Surprisingly, ESCRT-III is retained at acentric micronuclei suggesting that ESCRT-III cannot repair these structures. Depletion of CHMP7 expression removes ESCRT-III accumulations at ruptured micronuclei, and removes the population of micronuclei with damaged DNA also containing a sensor for cytosolic DNA.Thus, ESCRT-III activity appears to protect from the consequence of genomic instability in a dichotomous fashion. Membrane repair activity prevents the occurrence of MN with weak envelopes; conversely, aberrant membrane remodelling at micronuclei generates a steady state pool of cytosolic DNA that may contribute to sustaining pro-inflammatory pathways in cancer cells.
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- 2018
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30. Perinatal iron deficiency and a high salt diet cause long-term kidney mitochondrial dysfunction and oxidative stress
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Claudia D. Holody, Danae L Keddie, Richard Mah, Ronan M. N. Noble, Andrew G. Woodman, Hélène Lemieux, Sareh Panahi, Stephane L. Bourque, and Ferrante S. Gragasin
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0301 basic medicine ,Male ,Time Factors ,Physiology ,Blood Pressure ,030204 cardiovascular system & hematology ,medicine.disease_cause ,Kidney ,Rats, Sprague-Dawley ,chemistry.chemical_compound ,0302 clinical medicine ,Pregnancy ,Superoxides ,Medicine ,2. Zero hunger ,chemistry.chemical_classification ,Age Factors ,Iron Deficiencies ,Mitochondria ,medicine.anatomical_structure ,Prenatal Exposure Delayed Effects ,Animal Nutritional Physiological Phenomena ,Female ,Kidney Diseases ,Cardiology and Cardiovascular Medicine ,Iron, Dietary ,medicine.medical_specialty ,Offspring ,Renal function ,Nutritional Status ,Nitric Oxide ,Nitric oxide ,Electron Transport Complex IV ,03 medical and health sciences ,Sex Factors ,Physiology (medical) ,Internal medicine ,Animals ,Reactive oxygen species ,business.industry ,Sodium, Dietary ,Maternal Nutritional Physiological Phenomena ,Original Articles ,medicine.disease ,Disease Models, Animal ,Oxidative Stress ,030104 developmental biology ,Endocrinology ,Blood pressure ,chemistry ,business ,Oxidative stress - Abstract
Aims Perinatal iron deficiency (ID) alters developmental trajectories of offspring, predisposing them to cardiovascular dysfunction in later life. The mechanisms underlying this long-term programming of renal function have not been defined. We hypothesized perinatal ID causes hypertension and alters kidney metabolic function and morphology in a sex-dependent manner in adult offspring. Furthermore, we hypothesized these effects are exacerbated by chronic consumption of a high salt diet. Methods and results Pregnant Sprague Dawley rats were fed either an iron-restricted or replete diet prior to and throughout pregnancy. Adult offspring were fed normal or high salt diets for 6 weeks prior to experimentation at 6 months of age. Blood pressure (BP) was assessed via indwelling catheters in anaesthetized offspring; kidney mitochondrial function was assessed via high-resolution respirometry; reactive oxygen species and nitric oxide were quantified via fluorescence microscopy. Adult males, but not females, exhibited increased systolic BP due to ID (P = 0.01) and high salt intake (P = 0.02). In males, but not in females, medullary mitochondrial content was increased by high salt (P = 0.003), while succinate-dependent respiration was reduced by ID (P Conclusion Perinatal ID causes long-term sex-dependent alterations in renal metabolic function and morphology, potentially contributing to hypertension and increased cardiovascular disease risk.
- Published
- 2018
31. Low dose resveratrol promotes hypertrophy in wildtype skeletal muscle and reduces damage in skeletal muscle of exercised mdx mice
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Knight M, McDonagh M, Shireen R. Lamandé, Toulson Sl, Keryn G. Woodman, Chantal A. Coles, and Jonathan M. White
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medicine.medical_specialty ,Duchenne muscular dystrophy ,Resveratrol ,Muscle hypertrophy ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Immune system ,Internal medicine ,medicine ,030304 developmental biology ,2. Zero hunger ,0303 health sciences ,biology ,business.industry ,Skeletal muscle ,medicine.disease ,3. Good health ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Mechanism of action ,biology.protein ,medicine.symptom ,Dystrophin ,business ,CD163 ,030217 neurology & neurosurgery - Abstract
Duchenne muscular dystrophy (DMD) is a progressive and fatal neuromuscular disorder for which there is no treatment. Therapies to restore dystrophin deficiency are not ready for clinical use and long-term efficiency is yet to be established. Therefore, there is a need to develop alternative strategies to treat DMD. Resveratrol is a nutraceutical with anti-inflammatory properties and previous studies have shown that high doses can benefit mdx mice. We treated 4-week-old mdx and wildtype mice with low-dose resveratrol (5mg/kg bodyweight/day) for 15 weeks. A voluntary exercise protocol was added to test if low dose resveratrol could reduce exercise-induced damage. We showed that resveratrol promoted skeletal muscle hypertrophy in the wildtype mice. There was no change in markers of pathology in the mdx mice; however, the low-dose resveratrol reduced exercised induced damage. Gene expression of immune cell markers such as CD86, CD163 and PCNA was reduced; however signalling targets associated with resveratrol’s mechanism of action of action including SIRT1 and NF-κB were unchanged. In conclusion, low-dose resveratrol was not effective in reducing disease pathology; however, its ability to promote hypertrophy in wildtype skeletal muscle could have direct applications to the livestock industry or in sports medicine.
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- 2018
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32. Benfotiamine reduces pathology and improves muscle function in mdx mice
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Rachelle H. Crosbie-Watson, Lamandé, Keryn G. Woodman, Elizabeth M. Gibbs, Jason D. White, McDonagh M, Chantal A. Coles, Toulson Sl, and Knight M
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musculoskeletal diseases ,congenital, hereditary, and neonatal diseases and abnormalities ,mdx mouse ,Pathology ,medicine.medical_specialty ,Duchenne muscular dystrophy ,Inflammation ,03 medical and health sciences ,0302 clinical medicine ,Fibrosis ,Utrophin ,medicine ,030304 developmental biology ,0303 health sciences ,Sarcolemma ,biology ,business.industry ,musculoskeletal system ,medicine.disease ,3. Good health ,Benfotiamine ,biology.protein ,medicine.symptom ,Dystrophin ,business ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Duchenne Muscular Dystrophy (DMD) is a progressive and fatal neuromuscular disease which arises from mutations in the dystrophin gene (DMD) that result in the absence or severe reduction of the cytoskeletal protein dystrophin. In addition to the primary dystrophin defect, secondary processes such as inflammation, calcium influx, dysregulated autophagy and fibrosis exacerbate dystrophic pathology and thus increase disease progression. While therapies to restore dystrophin deficiency are being developed, strategies which target these secondary processes could be of benefit to patients. Benfotiamine is a lipid soluble precursor to thiamine that can reduce secondary processes such as inflammation and oxidative stress in diabetic patients. As such we tested it in the mdx mouse model of DMD and found that benfotiamine reduced multiple markers of dystrophic pathology and improved grip strength. In addition, members of the utrophin and dystrophin glycoprotein complexes were significantly increased at the sarcolemma which could improve cell adhesion. We also demonstrated that benfotiamine treatment lowered the expression of macrophage markers and pro-inflammatory cytokines suggesting that benfotiamine is reducing dystrophic pathology by acting on inflammatory processes.
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- 2018
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33. A Twofold Strategy for Riparian Restoration: Combining a Functional Flow Regime and Direct Seeding to Re-establish Cottonwoods
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John M. Mahoney, Stewart B. Rood, Karen M. Gill, Samuel G. Woodman, David W. Pearce, E. J. Hillman, and Sobadini Kaluthota
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Hydrology ,geography ,Functional ecology ,geography.geographical_feature_category ,biology ,Flood myth ,Floodplain ,National park ,Seed dispersal ,0208 environmental biotechnology ,Forestry ,02 engineering and technology ,biology.organism_classification ,020801 environmental engineering ,Seedling ,Environmental Chemistry ,Environmental science ,Populus angustifolia ,General Environmental Science ,Water Science and Technology ,Riparian zone - Abstract
The transboundary St Mary River drains Glacier National Park, USA, and was progressively dammed and diverted over the 20th century to support agricultural irrigation in northern Montana and southern Alberta, Canada. Following reduced instream flows, the riparian cottonwoods collapsed, and by 2000, few parental trees remained to provide seeds for cottonwood replenishment. As a novel twofold restoration strategy we: (1) worked with the dam operators to deliver a functional flow regime, a regulated instream flow pattern intended to recover some ecological function and specifically seedling recruitment, and (2) delivered cottonwood seeds by direct spreading and by sticking cuttings with seed catkins to allow gradual seed dispersal. The combination of river regulation and seeding enabled cottonwood colonization, and around 1.5% of the applied seeds produced seedlings after the first summer, at sites without livestock or heavy recreational use. Around 15% of those seedlings survived through the fourth summer, with mortality due to drought stress and flood scour, and establishment and survival were higher for the prairie cottonwood, Populus deltoides, than the narrowleaf cottonwood, Populus angustifolia. This study confirmed that the lack of seed source trees limited cottonwood colonization and demonstrated that the twofold restoration strategy provides promise for severe situations where parental trees have been lost. However, this would require substantial effort, and it would be more efficient to provide survivable instream flow patterns that avoid cottonwood collapse. Copyright © 2015 John Wiley & Sons, Ltd.
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- 2015
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34. The flexibility and dynamics of the tubules in the endoplasmic reticulum
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Pantelis, Georgiades, Victoria J, Allan, Graham D, Wright, Philip G, Woodman, Parinya, Udommai, Manloeng A, Chung, and Thomas A, Waigh
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Microscopy, Fluorescence ,Cell Line, Tumor ,Fluorescent Antibody Technique ,Humans ,Endoplasmic Reticulum ,Biomarkers ,Article ,Molecular Imaging - Abstract
The endoplasmic reticulum (ER) is a single organelle in eukaryotic cells that extends throughout the cell and is involved in a large number of cellular functions. Using a combination of fixed and live cells (human MRC5 lung cells) in diffraction limited and super-resolved fluorescence microscopy (STORM) experiments, we determined that the average persistence length of the ER tubules was 3.03 ± 0.24 μm. Removing the branched network junctions from the analysis caused a slight increase in the average persistence length to 4.71 ± 0.14 μm, and provides the tubule’s persistence length with a moderate length scale dependence. The average radius of the tubules was 44.1 ± 3.2 nm. The bending rigidity of the ER tubule membranes was found to be 10.9 ± 1.2 kT (17.0 ± 1.3 kT without branch points). We investigated the dynamic behaviour of ER tubules in live cells, and found that the ER tubules behaved like semi-flexible fibres under tension. The majority of the ER tubules experienced equilibrium transverse fluctuations under tension, whereas a minority number of them had active super-diffusive motions driven by motor proteins. Cells thus actively modulate the dynamics of the ER in a well-defined manner, which is expected in turn to impact on its many functions.
- Published
- 2017
35. Dynein light intermediate chains maintain spindle bipolarity by functioning in centriole cohesion
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Anna K. Salter, Philip G. Woodman, Victoria J. Allan, Sarah Woolner, Peter T Ruane, Georgina K. Goddard, Laura A. Jones, Nancy Papalopulu, Toby Starborg, and Cécile Villemant
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Cytoplasmic Dyneins ,Centriole ,Molecular Sequence Data ,Dynein ,Kinesins ,Mitosis ,Spindle Apparatus ,Biology ,Microtubules ,Article ,Xenopus laevis ,Cell Movement ,Microtubule ,Cell Line, Tumor ,Animals ,Humans ,RNA, Small Interfering ,Kinetochores ,Research Articles ,Centrioles ,Kinetochore ,Dynactin Complex ,Cell Biology ,3. Good health ,Spindle apparatus ,Cell biology ,HEK293 Cells ,Centrosome ,Microtubule Proteins ,Female ,RNA Interference ,Microtubule-Associated Proteins ,Multipolar spindles ,HeLa Cells - Abstract
Cytoplasmic dynein light intermediate chains are required for the maintenance of centriole cohesion and the formation of a bipolar spindle in both human cells and Xenopus embryos., Cytoplasmic dynein 1 (dynein) is a minus end–directed microtubule motor protein with many cellular functions, including during cell division. The role of the light intermediate chains (LICs; DYNC1LI1 and 2) within the complex is poorly understood. In this paper, we have used small interfering RNAs or morpholino oligonucleotides to deplete the LICs in human cell lines and Xenopus laevis early embryos to dissect the LICs’ role in cell division. We show that although dynein lacking LICs drives microtubule gliding at normal rates, the LICs are required for the formation and maintenance of a bipolar spindle. Multipolar spindles with poles that contain single centrioles were formed in cells lacking LICs, indicating that they are needed for maintaining centrosome integrity. The formation of multipolar spindles via centrosome splitting after LIC depletion could be rescued by inhibiting Eg5. This suggests a novel role for the dynein complex, counteracted by Eg5, in the maintenance of centriole cohesion during mitosis.
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- 2014
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36. Biogenesis of Lysosome-related Organelles Complex-1 Subunit 1 (BLOS1) Interacts with Sorting Nexin 2 and the Endosomal Sorting Complex Required for Transport-I (ESCRT-I) Component TSG101 to Mediate the Sorting of Epidermal Growth Factor Receptor into Endosomal Compartments
- Author
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Ling Zhang, Xin He, Wei Li, Lin Yang, Aili Zhang, and Philip G. Woodman
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Retromer ,Endosome ,Biogenesis of lysosome-related organelles complex 1 ,Nerve Tissue Proteins ,Endosomes ,Biology ,Biochemistry ,ESCRT ,Mitochondrial Proteins ,Mice ,Two-Hybrid System Techniques ,Lysosome ,medicine ,Animals ,Humans ,TSG101 ,Biotinylation ,RNA, Small Interfering ,Lung ,Sorting Nexins ,Molecular Biology ,Mice, Knockout ,Endosomal Sorting Complexes Required for Transport ,Cell Biology ,Fibroblasts ,Fibrosis ,Cell biology ,DNA-Binding Proteins ,ErbB Receptors ,Mice, Inbred C57BL ,Sorting nexin ,medicine.anatomical_structure ,Lysosomes ,hormones, hormone substitutes, and hormone antagonists ,Biogenesis ,HeLa Cells ,Protein Binding ,Signal Transduction ,Transcription Factors - Abstract
Biogenesis of lysosome-related organelles complex-1 (BLOC-1) is a component of the molecular machinery required for the biogenesis of specialized organelles and lysosomal targeting of cargoes via the endosomal to lysosomal trafficking pathway. BLOS1, one subunit of BLOC-1, is implicated in lysosomal trafficking of membrane proteins. We found that the degradation and trafficking of epidermal growth factor receptor (EGFR) were delayed in BLOS1 knockdown cells, which were rescued through BLOS1 overexpression. A key feature to the delayed EGFR degradation is the accumulation of endolysosomes in BLOS1 knockdown cells or BLOS1 knock-out mouse embryonic fibroblasts. BLOS1 interacted with SNX2 (a retromer subunit) and TSG101 (an endosomal sorting complex required for transport subunit-I) to mediate EGFR lysosomal trafficking. These results suggest that coordination of the endolysosomal trafficking proteins is important for proper targeting of EGFR to lysosomes.
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- 2014
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37. Developmental programming of renal function: nephron endowment and beyond
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Stephane L. Bourque and Andrew G. Woodman
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0301 basic medicine ,Pregnancy ,Kidney ,Physiology ,business.industry ,Renal function ,Nephron endowment ,Hypoxia (medical) ,Bioinformatics ,medicine.disease ,03 medical and health sciences ,030104 developmental biology ,medicine.anatomical_structure ,Medicine ,medicine.symptom ,business ,Developmental programming ,Kidney tubules - Published
- 2018
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38. Leucine-rich repeat kinase 2 regulates autophagy through a calcium-dependent pathway involving NAADP
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Duncan Bloor-Young, Sabine Hilfiker, Ling-ling Zhang, Dev Churamani, Philip G. Woodman, Sandip Patel, Grant C. Churchill, Patricia Gómez-Suaga, and Berta Luzón-Toro
- Subjects
Adenosine monophosphate ,Calcium-Calmodulin-Dependent Protein Kinase Kinase ,Biology ,Mitogen-activated protein kinase kinase ,AMP-Activated Protein Kinases ,Protein Serine-Threonine Kinases ,Endoplasmic Reticulum ,Leucine-Rich Repeat Serine-Threonine Protein Kinase-2 ,PC12 Cells ,chemistry.chemical_compound ,Genetics ,Autophagy ,Animals ,Humans ,ASK1 ,Calcium Signaling ,Protein kinase A ,Molecular Biology ,Genetics (clinical) ,Nicotinic acid adenine dinucleotide phosphate ,Kinase ,General Medicine ,Articles ,LRRK2 ,Cell biology ,nervous system diseases ,Rats ,HEK293 Cells ,Biochemistry ,chemistry ,Proto-Oncogene Proteins c-bcl-2 ,Lysosomes ,Proteasome Inhibitors ,NADP - Abstract
Mutations in the leucine-rich repeat kinase-2 (LRRK2) gene cause late-onset Parkinson's disease, but its physiological function has remained largely unknown. Here we report that LRRK2 activates a calcium-dependent protein kinase kinase-β (CaMKK-β)/adenosine monophosphate (AMP)-activated protein kinase (AMPK) pathway which is followed by a persistent increase in autophagosome formation. Simultaneously, LRKR2 overexpression increases the levels of the autophagy receptor p62 in a protein synthesis-dependent manner, and decreases the number of acidic lysosomes. The LRRK2-mediated effects result in increased sensitivity of cells to stressors associated with abnormal protein degradation. These effects can be mimicked by the lysosomal Ca 2+-mobilizing messenger nicotinic acid adenine dinucleotide phosphate (NAADP) and can be reverted by an NAADP receptor antagonist or expression of dominant-negative receptor constructs. Collectively, our data indicate a molecular mechanism for LRRK2 deregulation of autophagy and reveal previously unidentified therapeutic targets. © The Author 2011. Published by Oxford University Press. All rights reserved.
- Published
- 2016
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39. The Charcot Marie Tooth disease protein LITAF is a zinc-binding monotopic membrane protein
- Author
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Wenxia, Qin, Lydia, Wunderley, Anne L, Barrett, Stephen, High, and Philip G, Woodman
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Amino Acid Motifs ,Molecular Sequence Data ,Membrane Proteins ,Nuclear Proteins ,membrane integration ,Cell Line ,ESCRT ,Protein Transport ,Charcot-Marie-Tooth Disease ,Microsomes ,Humans ,Amino Acid Sequence ,Apoptosis Regulatory Proteins ,Carrier Proteins ,endosome ,Research Articles ,CDIP1 ,HeLa Cells ,Transcription Factors ,Research Article - Abstract
LITAF (LPS-induced TNF-activating factor) is an endosome-associated integral membrane protein important for multivesicular body sorting. Several mutations in LITAF cause autosomal-dominant Charcot Marie Tooth disease type 1C. These mutations map to a highly conserved C-terminal region, termed the LITAF domain, which includes a 22 residue hydrophobic sequence and flanking cysteine-rich regions that contain peptide motifs found in zinc fingers. Although the LITAF domain is thought to be responsible for membrane integration, the membrane topology of LITAF has not been established. Here, we have investigated whether LITAF is a tail-anchored (TA) membrane-spanning protein or monotopic membrane protein. When translated in vitro, LITAF integrates poorly into ER-derived microsomes compared with Sec61β, a bona fide TA protein. Furthermore, introduction of N-linked glycosylation reporters shows that neither the N-terminal nor C-terminal domains of LITAF translocate into the ER lumen. Expression in cells of an LITAF construct containing C-terminal glycosylation sites confirms that LITAF is not a TA protein in cells. Finally, an immunofluorescence-based latency assay showed that both the N- and C-termini of LITAF are exposed to the cytoplasm. Recombinant LITAF contains 1 mol/mol zinc, while mutation of predicted zinc-binding residues disrupts LITAF membrane association. Hence, we conclude that LITAF is a monotopic membrane protein whose membrane integration is stabilised by a zinc finger. The related human protein, CDIP1 (cell death involved p53 target 1), displays identical membrane topology, suggesting that this mode of membrane integration is conserved in LITAF family proteins.
- Published
- 2016
40. UBAP1 Is a Component of an Endosome-Specific ESCRT-I Complex that Is Essential for MVB Sorting
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Stuart Pickering-Brown, Johanna Donovan, Janis Bennion, Aurelie Doyotte, Sandra Taylor, Kim Brownhill, Flavia Stefani, Ling Zhang, Philip G. Woodman, and Sara Rollinson
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Agricultural and Biological Sciences(all) ,ESCRT I complex ,Biochemistry, Genetics and Molecular Biology(all) ,Endosome ,Viral budding ,Ubiquitin homeostasis ,macromolecular substances ,Biology ,General Biochemistry, Genetics and Molecular Biology ,ESCRT ,Cell biology ,TSG101 ,General Agricultural and Biological Sciences ,Cytokinesis ,Membrane invagination - Abstract
SummaryEndosomal sorting complexes required for transport (ESCRTs) regulate several events involving membrane invagination, including multivesicular body (MVB) biogenesis, viral budding, and cytokinesis [1]. In each case, upstream ESCRTs combine with additional factors, such as Bro1 proteins [2–4], to recruit ESCRT-III and the ATPase VPS4 in order to drive membrane scission [5]. A clue to understanding how such diverse cellular processes might be controlled independently of each other has been the identification of ESCRT isoforms. Mammalian ESCRT-I comprises TSG101, VPS28, VPS37A–D [6–8], and MVB12A/B [9]. These could generate several ESCRT-I complexes, each targeted to a different compartment and able to recruit distinct ESCRT-III proteins. Here we identify a novel ESCRT-I component, ubiquitin-associated protein 1 (UBAP1), which contains a region conserved in MVB12 [10]. UBAP1 binds the endosomal Bro1 protein His domain protein tyrosine phosphatase (HDPTP) [4], but not Alix, a Bro1 protein involved in cytokinesis [11, 12]. UBAP1 is required for sorting EGFR to the MVB and for endosomal ubiquitin homeostasis, but not for cytokinesis. UBAP1 is part of a complex that contains a fraction of total cellular TSG101 and that also contains VPS37A but not VPS37C. Hence, the presence of UBAP1, in combination with VPS37A, defines an endosome-specific ESCRT-I complex.
- Published
- 2011
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41. Functional interplay between LIS1, NDE1 and NDEL1 in dynein-dependent organelle positioning
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Lisa Thorpe, Connie Lam, Maïlys A. S. Vergnolle, Philip G. Woodman, and Victoria J. Allan
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Endosome ,Recombinant Fusion Proteins ,Green Fluorescent Proteins ,Endocytic cycle ,Dynein ,Golgi Apparatus ,Mitosis ,Endosomes ,Biology ,symbols.namesake ,Microtubule ,Organelle ,Humans ,RNA, Small Interfering ,cdc42 GTP-Binding Protein ,Cytoskeleton ,Cell Nucleus ,Organelles ,Dyneins ,Intracellular Membranes ,Cell Biology ,Golgi apparatus ,Cell biology ,Phenotype ,Cdc42 GTP-Binding Protein ,1-Alkyl-2-acetylglycerophosphocholine Esterase ,symbols ,Dynactin ,Carrier Proteins ,Lysosomes ,Microtubule-Associated Proteins ,HeLa Cells ,Protein Binding - Abstract
LIS1, NDE1 and NDEL1 modulate cytoplasmic dynein function in several cellular contexts. However, evidence that they regulate dynein-dependent organelle positioning is limited. Here, we show that depletion of NDE1 or NDEL1 alone profoundly affected the organisation of the Golgi complex but did not cause it to disperse, and slightly affected the position of endocytic compartments. However, striking dispersal of organelles was observed when both NDE1 and NDEL1 were depleted. A substantial portion of NDE1 and NDEL1 is membrane associated, and depletion of these proteins led to complete loss of dynein from membranes. Knockdown of LIS1 also caused the Golgi complex to fragment and disperse throughout the cell, and caused endocytic compartments to relocalise to the periphery. Depletion of LIS1, which is primarily cytosolic, led to partial loss of membrane-associated dynein, without affecting NDE1 and NDEL1. These data suggest that NDE1 and NDEL1 act upstream of LIS1 in dynein recruitment, and/or activation, on the membrane. Consistent with this hypothesis, expression of exogenous NDE1 or NDEL1 rescued the effects of LIS1 depletion on Golgi organisation, whereas LIS1 was only partially effective at rescuing the loss of NDE1 and NDEL1.
- Published
- 2010
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42. The Bro1-related protein HD-PTP/PTPN23 is required for endosomal cargo sorting and multivesicular body morphogenesis
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Alexander A. Mironov, Philip G. Woodman, Edward McKenzie, and Aurelie Doyotte
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Multidisciplinary ,biology ,Endosome ,Recombinant Fusion Proteins ,Green Fluorescent Proteins ,Saccharomyces cerevisiae ,Endocytic cycle ,Biological Transport ,Endosomes ,Protein tyrosine phosphatase ,Plasma protein binding ,Biological Sciences ,Protein Tyrosine Phosphatases, Non-Receptor ,biology.organism_classification ,gag Gene Products, Human Immunodeficiency Virus ,Endocytosis ,ESCRT ,Protein Structure, Tertiary ,Cell biology ,Protein structure ,Receptors, Transferrin ,Multivesicular Body ,Transport Vesicles ,Protein Binding - Abstract
The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). The mammalian ortholog of Bro1p is not known; although Alix, a structurally related protein, supports the topologically similar process of virus budding, functional studies have so far failed to identify a role for Alix in MVB formation. To establish whether Alix or similar protein(s) participate in endosomal sorting, we attached a retroviral peptide that binds Alix to a reporter receptor. This chimera was sorted efficiently away from the early endosome to the lumen of late endocytic compartments. Surprisingly, sorting was not prevented by depleting Alix but instead required the Alix-related protein His domain phosphotyrosine phosphatase (HD-PTP)/His-Domain/Type N23 protein tyrosine phosphatase (PTPN23). Depletion of HD-PTP also reduced transfer of fluid-phase markers and EGF receptor to lysosomes, caused the accumulation of ubiquitinated proteins on endosomal compartments and disrupted the morphogenesis of MVBs. Rescue experiments using an RNAi-resistant version of HD-PTP and HD-PTP mutants demonstrated an essential role for the HD-PTP Bro1 domain, with ESCRT-III binding correlating with full biological activity.
- Published
- 2008
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43. Caspase-mediated cleavage of syntaxin 5 and giantin accompanies inhibition of secretory traffic during apoptosis
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Philip G. Woodman, Jon D. Lane, Martin Lowe, and Victoria J. Allan
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Biological Transport, Active ,Golgi Apparatus ,Apoptosis ,In Vitro Techniques ,Endoplasmic Reticulum ,Cleavage (embryo) ,symbols.namesake ,Animals ,Humans ,Syntaxin ,Caspase ,biology ,Caspase 3 ,Qa-SNARE Proteins ,Vesicle ,Golgi Matrix Proteins ,Membrane Proteins ,Cell Biology ,Golgi apparatus ,Recombinant Proteins ,Syntaxin 3 ,Protein Structure, Tertiary ,Rats ,Cell biology ,Vesicular transport protein ,Phenotype ,Caspases ,Mutagenesis, Site-Directed ,biology.protein ,symbols ,HeLa Cells - Abstract
We report the caspase-dependent cleavage of two Golgi-associated transport factors during apoptosis. The tethering factor giantin is rapidly cleaved both in vitro and in vivo at a conserved site, to generate a stable membrane-anchored domain and a soluble domain that is subject to further caspase-dependent cleavage. The t-SNARE syntaxin 5 is also cleaved rapidly, resulting in the separation of the catalytic membrane-proximal domain from an N-terminal regulatory domain. Cleavage of giantin and syntaxin 5 is accompanied by a cessation of vesicular transport between the ER and the Golgi complex, which first manifests itself as a block in ER exit. The contribution that such an inhibition of trafficking may make towards the generation of an apoptotic phenotype is discussed.
- Published
- 2004
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44. Role of calnexin in the glycan-independent quality control of proteolipid protein
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Philip G. Woodman, Stephen High, and Eileithyia Swanton
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Protein Folding ,Glycosylation ,Proteolipid protein 1 ,Calnexin ,Protein Conformation ,Endoplasmic Reticulum ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,Mice ,JUNQ and IPOD ,Polysaccharides ,Animals ,Humans ,Protein Precursors ,RNA, Small Interfering ,Myelin Proteolipid Protein ,Endoplasmic Reticulum Chaperone BiP ,Molecular Biology ,Heat-Shock Proteins ,General Immunology and Microbiology ,biology ,General Neuroscience ,Endoplasmic reticulum ,Membrane Proteins ,Articles ,Prolactin ,Cell biology ,Transmembrane domain ,Membrane protein ,Chaperone (protein) ,COS Cells ,biology.protein ,lipids (amino acids, peptides, and proteins) ,Calreticulin ,Carrier Proteins ,Molecular Chaperones ,Protein Binding - Abstract
The endoplasmic (ER) quality control apparatus ensures that misfolded or unassembled proteins are not deployed within the cell, but are retained in the ER and degraded. A glycoprotein-specific system involving the ER lectins calnexin and calreticulin is well documented, but very little is known about mechanisms that may operate for non-glycosylated proteins. We have used a folding mutant of a non- glycosylated membrane protein, proteolipid protein (PLP), to examine the quality control of this class of polypeptide. We find that calnexin associates with newly synthesized PLP molecules, binding stably to misfolded PLP. Calnexin also binds stably to an isolated transmembrane domain of PLP, suggesting that this chaperone is able to monitor the folding and assembly of domains within the ER membrane. Notably, this glycan-independent interaction with calnexin significantly retards the degradation of misfolded PLP. We propose that calnexin contributes to the quality control of non-glycosylated polytopic membrane proteins by binding to misfolded or unassembled transmembrane domains, and discuss our findings in relation to the role of calnexin in the degradation of misfolded proteins.
- Published
- 2003
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45. ESCRT-0 marks an APPL1-independent transit route for EGFR between the cell surface and the EEA1-positive early endosome
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Neftali, Flores-Rodriguez, David A, Kenwright, Pei-Hua, Chung, Andrew W, Harrison, Flavia, Stefani, Thomas A, Waigh, Victoria J, Allan, and Philip G, Woodman
- Subjects
Hrs ,Particle-based colocalisation ,EGFR ,Vesicular Transport Proteins ,macromolecular substances ,Endosomes ,EEA1 ,Cell Line, Tumor ,Image Processing, Computer-Assisted ,Humans ,RNA, Small Interfering ,Transport Vesicles ,Sorting Nexins ,Adaptor Proteins, Signal Transducing ,Endosomal Sorting Complexes Required for Transport ,Epidermal Growth Factor ,Cell Membrane ,Ubiquitination ,Phosphoproteins ,Enzyme Activation ,ErbB Receptors ,Protein Transport ,ESCRT-I ,RNA Interference ,HeLa Cells ,Research Article - Abstract
Endosomal sorting complexes required for transport (ESCRT)-0 sorts ubiquitylated EGFR within the early endosome so that the receptor can be incorporated into intralumenal vesicles. An important question is whether ESCRT-0 acts solely upon EGFR that has already entered the vacuolar early endosome (characterised by the presence of EEA1) or engages EGFR within earlier compartments. Here, we employ a suite of software to determine the localisation of ESCRT-0 at subpixel resolution and to perform particle-based colocalisation analysis with other endocytic markers. We demonstrate that although some of the ESCRT-0 subunit Hrs (also known as HGS) colocalises with the vacuolar early endosome marker EEA1, most localises to a population of peripheral EEA1-negative endosomes that act as intermediates in transporting EGFR from the cell surface to more central early endosomes. The peripheral Hrs-labelled endosomes are distinct from APPL1-containing endosomes, but co-label with the novel endocytic adaptor SNX15. In contrast to ESCRT-0, ESCRT-I is recruited to EGF-containing endosomes at later times as they move to more a central position, whereas ESCRT-III is also recruited more gradually. RNA silencing experiments show that both ESCRT-0 and ESCRT-I are important for the transit of EGF to EEA1 endosomes.
- Published
- 2015
46. Mammalian class E vps proteins recognize ubiquitin and act in the removal of endosomal protein–ubiquitin conjugates
- Author
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Alistair Horman, Naomi Bishop, and Philip G. Woodman
- Subjects
Saccharomyces cerevisiae Proteins ,Endosome ,Endocytic cycle ,Vesicular Transport Proteins ,Endosomes ,macromolecular substances ,Biology ,Ubiquitin-conjugating enzyme ,Article ,Ligases ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Ubiquitin ,Epidermal growth factor ,Animals ,Humans ,TSG101 ,030304 developmental biology ,Mammals ,0303 health sciences ,Sheep ,Endosomal Sorting Complexes Required for Transport ,Epidermal Growth Factor ,Cell Biology ,endocytosis ,EGF receptor ,down-regulation ,ubiquitin ,multivesicular ,Cell biology ,Transport protein ,DNA-Binding Proteins ,ErbB Receptors ,Protein Transport ,Biochemistry ,Hepatocyte Growth Factor Receptor ,Immunoglobulin G ,Ubiquitin-Conjugating Enzymes ,biology.protein ,Carrier Proteins ,030217 neurology & neurosurgery ,HeLa Cells ,Transcription Factors - Abstract
There is increasing evidence that ubiquitination of receptors provides an important endosomal sorting signal. Here we report that mammalian class E vacuolar protein-sorting (vps) proteins recognize ubiquitin. Both tumor susceptibility gene 101 (TSG101)/human VPS (hVPS)28 and hepatocyte growth factor receptor substrate (Hrs) cytosolic complexes bind ubiquitin-agarose. TSG101 and hVPS28 are localized to endosomes that contain internalized EGF receptor and label strongly for ubiquitinated proteins. Microinjection of anti-hVPS28 specifically retards EGF degradation and leads to endosomal accumulation of ubiquitin–protein conjugates. Likewise, depletion of TSG101 impairs EGF trafficking and causes dramatic relocalization of ubiquitin to endocytic compartments. Similar defects are found in cells overexpressing Hrs, further emphasizing the links between class E protein function, receptor trafficking, and endosomal ubiquitination.
- Published
- 2002
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47. Caspase-mediated cleavage of the stacking protein GRASP65 is required for Golgi fragmentation during apoptosis
- Author
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Francis A. Barr, John M. Lucocq, James G. Pryde, Philip G. Woodman, Martin Lowe, Jon D. Lane, and Victoria J. Allan
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Green Fluorescent Proteins ,Golgi Apparatus ,Apoptosis ,Caspase 3 ,Golgi reassembly ,Cleavage (embryo) ,Autoantigens ,Article ,Amino Acid Chloromethyl Ketones ,Golgi apparatus ,apoptosis ,GRASP65 ,Golgi structure ,caspase ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,Humans ,Enzyme Inhibitors ,Caspase ,Glycoproteins ,030304 developmental biology ,0303 health sciences ,Membrane Glycoproteins ,Microscopy, Video ,biology ,Golgi Matrix Proteins ,Membrane Proteins ,Proteins ,Cell Biology ,Cell biology ,Luminescent Proteins ,Microscopy, Electron ,Membrane ,Microscopy, Fluorescence ,Membrane protein ,Caspases ,biology.protein ,symbols ,N-Acetylgalactosaminyltransferases ,Oligopeptides ,030217 neurology & neurosurgery ,Cytokinesis ,HeLa Cells ,Peptide Hydrolases - Abstract
The mammalian Golgi complex is comprised of a ribbon of stacked cisternal membranes often located in the pericentriolar region of the cell. Here, we report that during apoptosis the Golgi ribbon is fragmented into dispersed clusters of tubulo-vesicular membranes. We have found that fragmentation is caspase dependent and identified GRASP65 (Golgi reassembly and stacking protein of 65 kD) as a novel caspase substrate. GRASP65 is cleaved specifically by caspase-3 at conserved sites in its membrane distal COOH terminus at an early stage of the execution phase. Expression of a caspase-resistant form of GRASP65 partially preserved cisternal stacking and inhibited breakdown of the Golgi ribbon in apoptotic cells. Our results suggest that GRASP65 is an important structural component required for maintenance of Golgi apparatus integrity.
- Published
- 2002
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48. Phosphorylation by cdc2-CyclinB1 Kinase Releases Cytoplasmic Dynein from Membranes
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Victoria J. Allan, Petra S.M. Mayr, John K. Sheehan, Sandra Doyle, Stephen G. Addinall, and Philip G. Woodman
- Subjects
Cytoplasm ,Molecular Sequence Data ,Xenopus ,Hyperphosphorylation ,Biochemistry ,Substrate Specificity ,Xenopus laevis ,Microtubule ,CDC2 Protein Kinase ,Animals ,Amino Acid Sequence ,Cloning, Molecular ,Cyclin B1 ,Phosphorylation ,Interphase ,Molecular Biology ,Metaphase ,Conserved Sequence ,Cyclin-dependent kinase 1 ,Base Sequence ,Sequence Homology, Amino Acid ,biology ,Kinase ,Cell Membrane ,Dyneins ,Cell Biology ,Cell cycle ,biology.organism_classification ,Cyclin-Dependent Kinases ,Recombinant Proteins ,Cell biology ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Oocytes ,Female ,Sequence Alignment - Abstract
Movement of various cargoes toward microtubule minus ends is driven by the microtubule motor cytoplasmic dynein (CD). Many cargoes are motile only during certain cell cycle phases, suggesting that CD function may be under cell cycle control. Phosphorylation of the CD light intermediate chain (DLIC) has been suggested to play a crucial role in modulating CD function during the Xenopus embryonic cell cycle, where CD-driven organelle movement is active in interphase but greatly reduced in metaphase. This down-regulation correlates with hyperphosphorylation of DLIC and release of CD from the membrane. Here we investigate the role of the key mitotic kinase, cdc2-cyclinB1, in this process. We show that DLIC within the native Xenopus CD complex is an excellent substrate for purified Xenopus cdc2-glutathione S-transferase (GST) cyclinB1 (cdc2-GSTcyclinB1) kinase. Mass spectrometry of native DLIC revealed that a conserved cdc2 site (Ser-197) previously implicated in the metaphase modulation of CD remains phosphorylated in interphase and so is unlikely to be the key regulatory site. We also demonstrate that incubating interphase membranes with cdc2-GSTcyclinB1 kinase results in substantial release of CD from the membrane. These data suggest that phosphorylation of DLIC by cdc2 kinase leads directly to the loss of membrane-associated CD and an inhibition of organelle movement.
- Published
- 2001
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49. TSG101/Mammalian VPS23 and Mammalian VPS28 Interact Directly and Are Recruited to VPS4-induced Endosomes
- Author
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Philip G. Woodman and Naomi Bishop
- Subjects
Saccharomyces cerevisiae Proteins ,Multiprotein complex ,Endosome ,Molecular Sequence Data ,Endocytic cycle ,Vesicular Transport Proteins ,Endosomes ,macromolecular substances ,Biology ,Biochemistry ,Protein Structure, Secondary ,Fungal Proteins ,Protein structure ,Animals ,Humans ,TSG101 ,Amino Acid Sequence ,Molecular Biology ,Adenosine Triphosphatases ,Vacuolar protein sorting ,Base Sequence ,Endosomal Sorting Complexes Required for Transport ,Sequence Homology, Amino Acid ,DNA ,Cell Biology ,Precipitin Tests ,Cell biology ,DNA-Binding Proteins ,VPS25 ,ESCRT complex ,Carrier Proteins ,Protein Binding ,Transcription Factors - Abstract
Class E vacuolar protein sorting (vps) proteins are required for appropriate sorting of receptors within the yeast endocytic pathway, and most probably function in the biogenesis of multivesicular bodies. We have identified the mammalian orthologue of Vps28p as a 221- amino acid cytosolic protein that interacts with TSG101/mammalian VPS23 to form part of a multiprotein complex. Co-immunoprecipitation and cross-linking experiments demonstrated that hVPS28 and TSG101 interact directly and that binding requires structural information within the conserved C-terminal portion of TSG101. TSG101 and hVPS28 are predominantly cytosolic. However, when endosomal vacuolization was induced by the expression of a dominant-negative mutant of another class E vps protein, human VPS4, a portion of both TSG101 and hVPS28 translocated to the surface of these vacuoles. We conclude that TSG101 and its interacting components are directly involved in endosomal sorting.
- Published
- 2001
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50. DNA-binding activity of the transcription factor upstream stimulatory factor 1 (USF-1) is regulated by cyclin-dependent phosphorylation
- Author
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Edwin Cheung, Petra S.M. Mayr, Federico Coda-Zabetta, Phillip G. Woodman, and David S.W. Boam
- Subjects
Cyclin-dependent kinase 1 ,biology ,Cyclin D ,Cyclin A ,USF2 ,Cell Biology ,Biochemistry ,Molecular biology ,Upstream Stimulatory Factor ,Sp3 transcription factor ,biology.protein ,Cyclin B1 ,Molecular Biology ,Cyclin A2 - Abstract
The ubiquitous transcription factor upstream stimulatory factor (USF) 1 is a member of the bzHLH (leucine zipper-basic-helix-loop-helix) family, which is structurally related to the Myc family of proteins. It plays a role in the regulation of many genes, including the cyclin B1 gene, which is active during the G2/M and M phases of the cell cycle and may also play a role in the regulation of cellular proliferation. We show that the affinity of recombinant USF-1 for DNA is greatly increased by treatment with active cyclin A2-p34cdc2 or cyclin B1-p34cdc2 complexes and that its interaction with DNA is dependent on p34cdc2-mediated phosphorylation. We have localized the phosphorylation site(s) to a region that lies outside the minimal DNA-binding domain but overlaps with the previously identified USF-specific region. Deletion studies of USF-1 suggest that amino acids 143-197 regulate DNA-binding activity in a phosphorylation-dependent manner.
- Published
- 1999
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