28 results on '"Ee-Ling Ng"'
Search Results
2. Digital mapping of soil carbon sequestration potential with enhanced vegetation cover over New South Wales, Australia
- Author
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Jonathan Gray, Bin Wang, Annette Cowie, Susan Orgill, Ee Ling Ng, and Cathleen M. Waters
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Hydrology ,Climate change mitigation ,Digital mapping ,Digital soil mapping ,Soil carbon sequestration ,Soil Science ,Environmental science ,Pollution ,Agronomy and Crop Science ,Vegetation cover - Published
- 2021
3. What are the social costs and benefits of lignite application to reduce ammonia emissions in intensive feedlot?
- Author
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Xia Liang, Shu Kee Lam, Ee Ling Ng, Deli Chen, and Anthony J. Weatherley
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Manure management ,Environmental Engineering ,Victoria ,Cost-Benefit Analysis ,0208 environmental biotechnology ,Population ,Environmental pollution ,02 engineering and technology ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,01 natural sciences ,Environmental protection ,Ammonia ,Animals ,Coal ,Environmental impact assessment ,Animal Husbandry ,education ,Waste Management and Disposal ,Ecosystem ,0105 earth and related environmental sciences ,education.field_of_study ,Air Pollutants ,Cost–benefit analysis ,business.industry ,General Medicine ,020801 environmental engineering ,Manure ,Greenhouse gas ,Feedlot ,Environmental science ,Cattle ,business - Abstract
Recent studies demonstrated that lignite application in feedlot can mitigate ammonia (NH3) emission from intensive livestock production, which is an important source of environmental pollution. However, the use of lignite on feedlot requires mining and transport of lignite, which are themselves sources of greenhouse gas and other gaseous pollutants. There is a need for an integrated assessment on the gas emissions to determine the potential impact of those additions to the production chain. Using a case study in Victoria, Australia, carbon dioxide (CO2) and NH3 were identified as key emission changes compared to business as usual (BAU). Social costs and benefits analysis indicated that these changes in emissions translate to social benefits of AUD$11 - $151 and $18 - $256 per cattle per year at lignite application rate of 3 and 6 kg m-2 respectively, while the corresponding social costs of the additional gaseous emissions are AUD$2 - $19 and $3 - $28 per cattle per year per 200 km. Our results indicate that the use of lignite in feedlot to mitigate NH3 can be targeted at feedlots located in proximity to lignite source, population centre and/or vulnerable ecosystems to maximise social benefits and minimise social costs. More broadly, estimating the social costs and benefits of changing manure management practice to mitigate NH3 emission generates information that can be used to evaluate alternative policies for N management.
- Published
- 2020
4. The nitrogen footprint for an Australian university: Institutional change for corporate sustainability
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Elizabeth A. Castner, Allison M. Leach, Deli Chen, Ee Ling Ng, Baojing Gu, Gerard Healey, James N. Galloway, Xia Liang, and Shu Kee Lam
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010504 meteorology & atmospheric sciences ,Reactive nitrogen ,Strategy and Management ,Population ,010501 environmental sciences ,01 natural sciences ,7. Clean energy ,Industrial and Manufacturing Engineering ,12. Responsible consumption ,Footprint ,Environmental protection ,11. Sustainability ,education ,Baseline (configuration management) ,0105 earth and related environmental sciences ,General Environmental Science ,2. Zero hunger ,Sustainable development ,education.field_of_study ,Renewable Energy, Sustainability and the Environment ,business.industry ,6. Clean water ,Corporate sustainability ,13. Climate action ,Sustainability ,Food processing ,Environmental science ,business - Abstract
Reactive nitrogen (Nr; all species of nitrogen other than N2 gas) is a major cause of air and water pollution, with worldwide costs of billions in human health and ecosystem damages. The nitrogen (N) footprint, which quantifies the anthropogenic release of Nr from the production and consumption of both food and energy, has been used as an indicator of sustainability at individual and national levels. Here, we present the first institutional N footprint in Australia – the N footprint for The University of Melbourne (UoM) in 2015, and projections to 2020 under four scenario families. The total N footprint of UoM in 2015 was 139 tonnes N; food production (36.7%), utilities (32.4%), and transport (28.1%) were the major contributors while food consumption and fertilizer usage made up the remaining 2.8%. Under a businessasusual scenario, the N footprint of UoM would grow by 13% to 157 tonnes N in 2020 due to increase in student and staff population and infrastructure development. However, UoM has the potential to reduce its N footprint by 59% relative to the 2015 baseline if it implements changes to food purchases and energy use by 2020. The mitigation strategies with the largest potential reduction should be prioritized, including shifting purchased electricity fuel sources to wind or solar (26% reduction) and reducing air travel emissions (25% reduction). We demonstrate the potential of the N footprint as a tool for an institution to assess and monitor the sustainability of its operations and governance. Universities are leading the way in sustainable development, and the calculation of N footprint for UoM is the starting point for future work on sustainable institutional Nr management in Australia.
- Published
- 2018
5. Minor effects of herbicides on microbial activity in agricultural soils are detected by N-transformation but not enzyme activity assays
- Author
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Terry J. Rose, Ee Ling Ng, Zhe Han Weng, Michael T. Rose, Lukas Van Zwieten, and Rachel H. Wood
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chemistry.chemical_classification ,Soil biology ,Soil Science ,Trifluralin ,Soil classification ,04 agricultural and veterinary sciences ,010501 environmental sciences ,Soil type ,01 natural sciences ,Microbiology ,Toxicology ,chemistry.chemical_compound ,chemistry ,Soil functions ,Insect Science ,Soil water ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Organic matter ,Atrazine ,0105 earth and related environmental sciences - Abstract
The potential effect of herbicides on soil functions, including nitrogen (N) transformations, is of interest to farmers, advisers, regulators and the community, yet comparisons of herbicides with different modes of action in a range of soil types are scarce. We applied seven commonly used herbicides (glyphosate acid, 2,4-dichlorophenoxyacetic acid [2,4-D], metsulfuron-methyl, trifluralin, diuron, atrazine and diflufenican) and one fungicide (tebuconazole) to five different Australian cropping soils at a recommended and five times recommended rate. Mineral N levels and the activities of eight enzymes involved organic matter cycling, including β-N-acetylglucosaminidase and leucine aminopeptidase contributing to organic N transformation, were monitored over a 28-d period. Only one herbicide (atrazine) at a recommended rate statistically (P 25% inhibition cf. control treatment) reduced NO3− formation in one soil type at the end of the incubation. The remaining herbicides at recommended rates had inconsistent, transitory or negligible effects on enzyme activities and mineral N levels. However, five times the recommended rate of metsulfuron-methyl or 2,4-D caused alterations to mineral N levels, either as reduced NO3− or increased NH4+, across multiple soil types. This study suggests that N-transformation assays were at least, if not, more sensitive to herbicides than enzyme assays. Overall, our study confirms that single recommended rate applications of herbicides typically have limited effects on soil functions such as N-transformation and soil enzyme activities involved in organic matter and nutrient cycling. The observation of significant effects at higher-than-label rates highlights the need to follow label instructions and prevent herbicide accumulation in soil.
- Published
- 2018
6. Plastic pollution in croplands threatens long-term food security
- Author
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Baojing Gu, Wentao Sun, Qiuliang Lei, Fu Bin, Youhua Ma, Chaowen Lin, Wu Shuxia, Dongfeng Huang, Hude Yang, Binghui He, Lianfeng Du, Mingdong Zhou, Fulin Zhang, Ma Xingwang, Chang Peng, Jianwu Yao, Yan Li, Deli Chen, Huanchun Li, Yufeng Wang, Hongyuan Wang, Xuejun Zhang, Changlin Kou, Pablo Galaviz, Liang Gong, Shuqin Jin, Lihua Jiang, Dan Zhang, Zhiyu Xu, Jian Zhu, Shiyou Sun, Li Chongxiao, Ee Ling Ng, Wanli Hu, Limei Zhai, Bin Xi, Yitao Zhang, Zhenhua Cheng, Liu Xiaoxia, Peiyi Zhao, Hongbin Liu, Liuqiang Zhou, Junting Pan, and Song Qin
- Subjects
0106 biological sciences ,Crops, Agricultural ,China ,010504 meteorology & atmospheric sciences ,Plastic film ,010603 evolutionary biology ,01 natural sciences ,Food Supply ,Soil ,Environmental Chemistry ,Ecosystem ,0105 earth and related environmental sciences ,General Environmental Science ,2. Zero hunger ,Soil health ,Global and Planetary Change ,Ecology ,Crop yield ,Soil organic matter ,Agriculture ,15. Life on land ,Plastic mulch ,6. Clean water ,Agronomy ,13. Climate action ,Soil water ,Environmental science ,Plastic pollution ,Mulch ,Plastics - Abstract
Plastic pollution is a global concern given its prevalence in aquatic and terrestrial ecosystems. Studies have been conducted on the distribution and impact of plastic pollution in marine ecosystems, but little is known on terrestrial ecosystems. Plastic mulch has been widely used to increase crop yields worldwide, yet the impact of plastic residues in cropland soils to soil health and crop production in the long term remained unclear. In this paper, using a global meta-analysis, we found that the use of plastic mulch can indeed increase crop yields on average by 25%-42% in the immediate season due to the increase of soil temperature (+8%) and moisture (+17%). However, the unabated accumulation of film residues in the field negatively impacts its physicochemical properties linked to healthy soil and threatens food production in the long term. It has multiple negative impacts on plant growth including crop yield (at the mean rate of -3% for every additional 100 kg/ha of film residue), plant height (-2%) and root weight (-5%), and soil properties including soil water evaporation capacity (-2%), soil water infiltration rate (-8%), soil organic matter (-0.8%) and soil available phosphorus (-5%) based on meta-regression. Using a nationwide field survey of China, the largest user of plastic mulch worldwide, we found that plastic residue accumulation in cropland soils has reached 550,800 tonnes, with an estimated 6%-10% reduction in cotton yield in some polluted sites based on current level of plastic residue content. Immediate actions should be taken to ensure the recovery of plastic film mulch and limit further increase in film residue loading to maintain the sustainability of these croplands.
- Published
- 2019
7. Microplastic pollution alters forest soil microbiome
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Ashley M. Dungan, Silk Yu Lin, Violette Geissen, Esperanza Huerta Lwanga, Ke Meng, John M. Colwell, Ee Ling Ng, Linda L. Blackall, Deli Chen, and Sarah Ede
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Pollution ,Microplastics ,Environmental Engineering ,Soil bacteria composition ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,Soil biology ,0211 other engineering and technologies ,02 engineering and technology ,Forests ,010501 environmental sciences ,complex mixtures ,01 natural sciences ,Soil respiration ,Soil ,Soil Pollutants ,Environmental Chemistry ,Ecosystem ,Waste Management and Disposal ,0105 earth and related environmental sciences ,media_common ,021110 strategic, defence & security studies ,WIMEK ,Polyethylene terephthalate ,Soil physical properties ,Microbiota ,Low-density polyethylene ,Bodemfysica en Landbeheer ,Soil Physics and Land Management ,Environmental chemistry ,Soil water ,Environmental science ,sense organs ,Polyester fibres ,Plastics - Abstract
The impact of microplastic pollution on terrestrial biota is an emerging research area, and this is particularly so for soil biota. In this study, we addressed this knowledge gap by examining the impact of aged low-density polyethylene (LDPE) and polyester fibres (i.e. polyethylene terephthalate, PET) on a forest microbiome composition and activity. We also measured the corresponding physicochemical changes in the soil. We observed that bacteria community composition diverged in PET and LDPE treated soils from that of the control by day 42. These changes occurred at 0.2% and 0.4% (w/w) of PET and at 3% LDPE. Additionally, soil respiration was 8-fold higher in soil that received 3% LDPE compared to other treatments and control. There were no clear patterns linking these biological changes to physicochemical changes measured. Taken together, we concluded that microplastics aging in the environment may have evolutionary consequences for forest soil microbiome and there is immediate implication for climate change if the observed increase in soil respiration is reproducible in multiple ecosystems.
- Published
- 2021
8. 03 / Intra-aortic balloon pump as supportive treatment for sepsis-induced cardiomyopathy and cardiogenic shock in a patient with intestinal tuberculosis
- Author
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Ee-Ling Ng
- Published
- 2018
9. A TME study with the fungicide pyrimethanil combined with different moisture regimes: effects on enchytraeids
- Author
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José Paulo Sousa, Rüdiger M. Schmelz, Cornelia Bandow, Jörg Römbke, and Ee Ling Ng
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Health, Toxicology and Mutagenesis ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,Toxicology ,01 natural sciences ,Soil ,chemistry.chemical_compound ,Germany ,Animals ,Soil Pollutants ,media_common.cataloged_instance ,Ecosystem ,Oligochaeta ,European union ,Water content ,0105 earth and related environmental sciences ,media_common ,Portugal ,Moisture ,biology ,04 agricultural and veterinary sciences ,General Medicine ,Enchytraeidae ,Pesticide ,biology.organism_classification ,Fungicides, Industrial ,Pyrimidines ,Agronomy ,chemistry ,Environmental chemistry ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Pyrimethanil - Abstract
Today's ecosystems are influenced by different factors that could evolve into stressors. Effects of pesticides, especially in agricultural areas, may interact with environmental factors, such as soil moisture fluctuation caused by global climate change. In this contribution, two semi-field studies conducted in Germany and Portugal with terrestrial model ecosystems are presented. Their aim was to assess the effects of the fungicide pyrimethanil under different soil moisture levels on Enchytraeidae. In Portugal a no observed effect concentration design was chosen, using two concentration levels: the maximum application rate (MAR) according to the safe use registration within the European Union and five times the MAR (1.82 and 9.09 mg/kg dry soil, respectively). Both concentrations did neither affect the total enchytraeid abundance nor single populations. In Germany an ECx design (effect concentration) was conducted, using 11 concentrations. In general, 14 EC50 values for different combinations of single species, moisture level and sampling date were determined. The strongest effects were found in dry soil, particularly for Fridericia connata (EC50: 3.48 mg/kg dry soil after 8 weeks of exposure). The advantages and challenges of these test designs are discussed with regard to the registration process of pesticides in the European Union. In any case, enchytraeids are suitable test organisms in such higher tier studies for the combined evaluation of chemical and climatic stressors due to their usually high diversity and abundances and their close contact with the soil solution.
- Published
- 2015
10. Do organic inputs alter resistance and resilience of soil microbial community to drying?
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Ronald J. Smernik, Timothy R. Cavagnaro, Antonio F. Patti, Michael T. Rose, Cassandra R. Schefe, and Ee Ling Ng
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Soil health ,Soil biodiversity ,Soil biology ,Soil organic matter ,fungi ,food and beverages ,Soil Science ,complex mixtures ,Microbiology ,Soil management ,Agronomy ,Soil functions ,Environmental science ,Soil ecology ,Soil fertility - Abstract
Grassland ecosystems in south-eastern Australia are important for dairy and livestock farming. Their productivity relies heavily on water availability, as well as the ecosystem services provided by soil microbial communities including carbon and nutrient cycling. Management practices such as compost application are being encouraged as a means to improve both soil water holding capacity and fertility, thereby buffering against the impacts of increasing climate variability. Such buffering consists of two complementary processes: resistance, which measures the ability of an ecosystem to maintain community structure and function during a period of stress (such as drying); and resilience, which measures the ability of an ecosystem to recover community structure and function post-stress. We investigated the effects of compost on the resistance and resilience of the grassland soil ecosystem under drying and drying with rewetting events, in a terrestrial model ecosystem. Overall, compost addition led to an increase in soil moisture, greater plant available P and higher plant δ15N. Soil C:nutrient ratios, mineral N content (NH4+ and NO3−) and soil microbial PLFA composition were similar between amended and unamended soils. Rainfall treatment led to differences in soil moisture, plant above-ground and below-ground biomass, plant δ15N, soil mineral N content (NH4+ and NO3−) and microbial biomass C, N and P composition but had no effects on soil C:nutrient ratios, plant available P and soil microbial PLFA composition. There was little interaction between rainfall and compost. Generally, the soil microbial community was resistant and resilient to fluctuations in rainfall regardless of compost amendment. However, these properties of the soil microbial community were translated to resilience and not resistance in soil functions. Overall, the results below-ground showed much greater response to rainfall than compost amendment. Water was the key factor shaping the soil microbial community, and nutrients were not strong co-limiting factors. Future projections of increasing rainfall variability will have important below-ground functional consequences in the grassland, including altered nutrient cycling.
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- 2015
11. Functional stoichiometry of soil microbial communities after amendment with stabilised organic matter
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Kevin Wilkinson, Antonio F. Patti, Michael T. Rose, Timothy R. Cavagnaro, Ee Ling Ng, and Cassandra R. Schefe
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0106 biological sciences ,Nutrient cycle ,Soil biology ,Soil Science ,engineering.material ,Biology ,complex mixtures ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,Biochar ,Organic matter ,2. Zero hunger ,chemistry.chemical_classification ,Compost ,Soil organic matter ,04 agricultural and veterinary sciences ,15. Life on land ,6. Clean water ,Agronomy ,chemistry ,Microbial population biology ,13. Climate action ,Environmental chemistry ,Soil water ,040103 agronomy & agriculture ,engineering ,0401 agriculture, forestry, and fisheries - Abstract
The transformation of organic matter amendments in the soil is regulated by soil microbial communities. We examined the utility of ecological and functional stoichiometry theories to explain microbial transformation of organic amendments in the soil and examined the key relationships between soil microbial community composition, biomass and activity with resource elemental composition (soil and organic input) and nutrient availability. Using two contrasting soils amended with raw green waste, its compost or biochar, we found that microbial PLFA composition was distinct for each soil and organic amendment. Microbial activity was strongly influenced by organic amendment. Further, we observed that changes in the soil stoichiometry with inputs were accompanied by changes in total PLFA and bacteria: fungal ratio, but the relationships between them were inconsistent and changed over time. Microbial activities involved in C, N and P cycling were generally correlated, but the relationship between hydrolase β-glucosidase (BGL) and microbial N and P activities was stronger and more consistent than that between oxidases (phenol oxidase PPO, peroxidase POX) and microbial N and P activities. These microbial activity relationships translated to a consistent relationship between log(BGL):log(nutrient) and soil C:nutrient but a weaker and inconsistent relationship between log(PPO + POX):log(nutrient) and soil C:nutrient. Our analyses indicate that microbial composition can be different, but stoichiometric invariance of microbial activity constrained microbial community response to organic input.
- Published
- 2014
12. Does the chemical nature of soil carbon drive the structure and functioning of soil microbial communities?
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Ronald J. Smernik, Ee Ling Ng, Kevin Wilkinson, Antonio F. Patti, Michael T. Rose, Timothy R. Cavagnaro, and Cassandra R. Schefe
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chemistry.chemical_classification ,Soil organic matter ,Soil biology ,Soil Science ,Soil chemistry ,Soil carbon ,complex mixtures ,Microbiology ,Carbon cycle ,Microbial population biology ,chemistry ,Environmental chemistry ,Soil water ,Organic matter - Abstract
The transformation of organic amendments (OA) in soil is in large part performed by soil microbial communities. These processes are strongly affected by the carbon composition of the OAs. We examined microbial community responses to three types of OA: green waste, composted green waste and pyrolysed green waste added to two contrasting agricultural soils. We investigated the relationship between the soil carbon composition (as determined by 13 C-solid state NMR), microbial community composition (as determined by phospholipid fatty acid analysis) and microbial activity (as determined by soil enzyme assays). We found that alkyl-C, O-aryl-C, aryl-C and carbonyl-C were able to explain most of the variations (≥50%) in soil microbial community composition and activity. Aryl-C content (reflecting relatively stable carbon forms) strongly influenced microbial composition, while carbonyl-C content (reflecting relatively labile carbon forms) strongly influenced the microbial activity. Our results confirm that there is a tight relationship between carbon composition and soil microbial community composition and function. Results are discussed in the context of examining the relationship between carbon forms, microbial community composition and activity following the addition of different OAs to the soil.
- Published
- 2014
13. The Search for the Meaning of Soil Health: Lessons from Human Health and Ecosystem Health
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Junling Zhang and Ee Ling Ng
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sustainable development goal ,lcsh:TJ807-830 ,Geography, Planning and Development ,lcsh:Renewable energy sources ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,01 natural sciences ,Ecosystem services ,smallholder farmers ,soil quality ,Environmental planning ,lcsh:Environmental sciences ,0105 earth and related environmental sciences ,lcsh:GE1-350 ,Soil health ,Ecosystem health ,Renewable Energy, Sustainability and the Environment ,soil fertility ,lcsh:Environmental effects of industries and plants ,04 agricultural and veterinary sciences ,agriculture systems ,sustainability ,Soil quality ,Natural resource ,Environmental studies ,lcsh:TD194-195 ,Sustainability ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Soil fertility - Abstract
Soil is central to human wellbeing through its provision of critical ecosystem services, including food and clean water. These services emerge through the self-organising nature of the soil system. Here, we consider the lessons learnt from the evolution of the understanding of human and ecosystem health for the conceptualisation and application of soil health. We share the fundamental and practical challenges of managing the land with respect to soil health, and the need for policy to drive the protection of soil as one of our most important non-renewable natural resources.
- Published
- 2019
14. A case report on a patient with Wolff-Parkinson-White syndrome presenting for scoliosis surgery
- Author
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Ee-Ling Ng
- Published
- 2016
15. Biochar Effects on Ecosystems
- Author
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Ee Ling Ng and Timothy R. Cavagnaro
- Subjects
Microbial ecology ,Ecology ,Soil biology ,Soil organic matter ,Biochar ,Stable-isotope probing ,Soil ecology ,Ecosystem ,Biology ,Trophic level - Abstract
To reflect the microbial ecology techniques being applied currently, this chapter aims to explore how the phospholipid fatty acids can be used to determine how biochar affects the structural, compositional, and functional capacities of microbial communities in different soil ecosystems. Used in combination with natural isotope or radioisotope (13C or 14C)-labeled substrates, it has the potential to determine soil organic matter cycling rate, monitor C flows from plants to soil microbes, and identify below-ground trophic relationships. Insights into biochar effects on soil phospholipid fatty acids, alternatives to data analysis, its limitations, and knowledge gaps are highlighted.
- Published
- 2016
16. Rab GTPases regulating receptor trafficking at the late endosome-lysosome membranes
- Author
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Fanny Ng, Ee Ling Ng, Bin Qi Gan, and Bor Luen Tang
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Endosome ,Clinical Biochemistry ,Endocytic cycle ,Insulin-like growth factor 2 receptor ,Cellular homeostasis ,Cell Biology ,General Medicine ,GTPase ,Biology ,Biochemistry ,Cell biology ,medicine.anatomical_structure ,Lysosome ,medicine ,Rab ,Late endosome - Abstract
Lysosomes serve key degradative functions for the turnover of membrane lipids and protein components. Its biogenesis is principally dependent on exocytic traffic from the late endosome via the trans-Golgi network, and it also receives cargo to be degraded from the endocytic pathway. Membrane trafficking to the late endosome-lysosome is tightly regulated to maintain the amplitude of signalling events and cellular homeostasis. Key coordinators of lysosomal traffic include members of the Rab small GTPase family. Amongst these, Rab7, Rab9 and the more recently studied Rab22B/31 have all been reported to regulate membrane trafficking processed at the late endosome-lysosome system. We discuss what is known about the roles of these Rab proteins and their interacting partners on the regulation of traffic of important receptor proteins such as the epidermal growth factor receptor (EGFR) and the mannose 6-phosphate receptor (M6PR), in association with the late endosome-lysosome system. Better knowledge of EGFR and M6PR traffic in this regard may aid in understanding the pathological processes, such as oncogenic transformations associated with these receptors.
- Published
- 2012
17. Rab22B’s role in trans-Golgi network membrane dynamics
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Bor Luen Tang, Ee Ling Ng, and Ya Wang
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G protein ,Protein subunit ,Biophysics ,Biology ,Transfection ,environment and public health ,Biochemistry ,Antibodies ,Mice ,Antibody Specificity ,Animals ,Humans ,Syntaxin ,Small GTPase ,Molecular Biology ,Cells, Cultured ,Late endosome ,Cellular localization ,Cell Membrane ,Cell Biology ,biology.organism_classification ,Immunohistochemistry ,Rats ,Cell biology ,Protein Transport ,Membrane protein ,rab GTP-Binding Proteins ,Vesicular stomatitis virus ,Rabbits ,HeLa Cells ,trans-Golgi Network - Abstract
The small GTPase Rab22B (or Rab31) has been suspected to be involved in trafficking at trans-Golgi network. However, its exact cellular localization, tissue expression profile, and functions have not been uncharacterized. Specific antibody raised against Rab22B's protein revealed that Rab22B is brain-enriched, but is also present in substantial levels in spleen and intestine. In HeLa cells, endogenous Rab22B is largely associated with the trans-Golgi network (TGN). Over-expression of a GDP-binding mutant (Rab22BSN), but not wild-type Rab22B, specifically disrupts the TGN localization of TGN46, a dynamic marker which cycles between the TGN and the plasma membrane. The TGN resident membrane protein syntaxin 16, cis-Golgi markers such as GM130 and syntaxin 5, as well as the TGN/late endosome marker mannose 6-phosphate receptor (M6PR) are not affected by Rab22BSN, neither was endosomal-TGN transport of the Shiga toxin B subunit. The disruption of TGN46 staining by Rab22BSN could be specifically attributed to a domain at the C-terminal portion of Rab22B, where its sequence deviates the most from Rab22A. Over-expression of Rab22BSN inhibits the cell surface transport of the vesicular stomatitis virus G protein. Thus, Rab22B may have a role in anterograde exit from the TGN.
- Published
- 2007
18. Risk factors for concurrent bacteremia in adult patients with dengue
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Yee Sin Leo, Ming S. Yeang, David C. Lye, Ee-Ling Ng, and Tun-Linn Thein
- Subjects
0301 basic medicine ,Adult ,Male ,Microbiology (medical) ,medicine.medical_specialty ,Multivariate analysis ,Adolescent ,030106 microbiology ,030231 tropical medicine ,lcsh:QR1-502 ,Bacteremia ,Severity ,lcsh:Microbiology ,Dengue fever ,Dengue ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Immunology and Microbiology(all) ,medicine ,Humans ,Immunology and Allergy ,Mortality ,Young adult ,Intensive care medicine ,Survival analysis ,Aged ,Retrospective Studies ,Aged, 80 and over ,Singapore ,General Immunology and Microbiology ,business.industry ,Case-control study ,Retrospective cohort study ,General Medicine ,Middle Aged ,medicine.disease ,Survival Analysis ,Hospitals ,Infectious Diseases ,Case-Control Studies ,Concurrent bacteremia ,Female ,business ,Cohort study - Abstract
Background/Purpose Bacteremia in dengue may occur with common exposure to pathogens in association with severe organ impairment or severe dengue, which may result in death. Cohort studies identifying risk factors for concurrent bacteremia among patients with dengue are rare. Methods We conducted a retrospective case–control study of adult patients with dengue who were admitted to the Department of Infectious Diseases at Tan Tock Seng Hospital, Singapore from 2004 to 2008. For each case of dengue with concurrent bacteremia (within the first 72 hours of admission), we selected four controls without bacteremia, who were matched on year of infection and dengue confirmation method. Conditional logistic regression was performed to identify risk factors for concurrent bacteremia. Results Among 9,553 patients with dengue, 29 (0.3%) had bacteremia. Eighteen of these patients (62.1%) had concurrent bacteremia. The predominant bacteria were Staphylococcus aureus , one of which was a methicillin-resistant strain. Dengue shock syndrome occurred more frequently and hospital stay was longer among cases than among controls. Three cases did not survive, whereas none of the controls died. In multivariate analysis, being critically ill at hospital presentation was independently associated with 15 times the likelihood of a patient with dengue having concurrent bacteremia. Conclusion Concurrent bacteremia in adult patients with dengue is uncommon but presents atypically and results in more deaths and longer hospital stay. Given the associated mortality, collection of blood cultures and empiric antibiotic therapy may be considered in patients who are critically ill.
- Published
- 2015
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19. Where the elements go when it rains: carbon and nutrient stocks of soil amended with stabilised organic matter
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Timothy R. Cavagnaro, Cassandra R. Schefe, Antonio F. Patti, and Ee Ling Ng
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chemistry.chemical_classification ,Compost ,Phosphorus ,chemistry.chemical_element ,engineering.material ,Nitrogen ,Nutrient ,chemistry ,Agronomy ,engineering ,Nutrient stocks ,Environmental science ,Organic matter ,Grassland ecosystem ,Carbon - Abstract
The addition of compost to the soil can increase C and nutrient levels, but how these are affected by different rainfall regimes remain unknown. This study determines the carbon (C), nitrogen (N) and phosphorus (P) stocks after drying and rewetting events in a compost-amended grassland ecosystem at 3 depths (0-5, 5-10, 10-30cm). Compost addition consistently increased C, N and P stocks despite altered rainfall but these improvements can only be detected by careful consideration of soil depths.
- Published
- 2015
20. Rab23: What Exactly Does it Traffic?
- Author
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Bor Luen Tang, Ee Ling Ng, and Ya Wang
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animal structures ,Effector ,Cell Biology ,Biology ,Biochemistry ,Cell biology ,Transport protein ,Smoothened Receptor ,Membrane protein ,Structural Biology ,embryonic structures ,Genetics ,biology.protein ,Sonic hedgehog ,Signal transduction ,Smoothened ,Molecular Biology ,Transcription factor - Abstract
Rab23 is the product of the gene mutated in the mouse open brain1 phenotype, which displays neural tube defects. It appears to antagonize sonic hedgehog (Shh)-mediated signaling during mouse development, presumably by regulating the intracellular trafficking of one or more of Shh's-signaling components. The Shh receptor Patched1 (Ptch1) and its downstream effector Smoothened (Smo) were initial prime suspects as they are membrane proteins whose cellular dynamics are modulated by the Shh signal. However, Rab23 mutants do not appear to affect the localization and dynamics of either protein. Genetic analyses have now shown that Rab23 functions downstream of Smo and affects the function of the Shh-regulated Gli family of transcription factors in a more direct manner than previously thought. A plethora of proteins that influence Shh signaling and whose cellular trafficking could potentially be regulated by Rab23 has also emerged. These include members of the intraflagellar transport complex, as well as motor proteins responsible for their assembly at the cilia. Rab23 is also expressed in adult mouse neurons and may thus have functions beyond embryonic developmental stages and Shh signaling. We discuss these new findings and explore the myriad of possibilities whereby Rab23 may function.
- Published
- 2006
21. Employment-Related Motivational Distortion: Its Nature, Measurement, and Reduction
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Ee-Ling Ng and A. Ralph Hakstian
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Psychometrics ,Scale (ratio) ,Applied Mathematics ,media_common.quotation_subject ,05 social sciences ,050401 social sciences methods ,050301 education ,Sample (statistics) ,Test validity ,Education ,Developmental psychology ,0504 sociology ,Facet (psychology) ,Statistics ,Developmental and Educational Psychology ,Personality ,Big Five personality traits ,Psychology ,0503 education ,Applied Psychology ,California Psychological Inventory ,media_common - Abstract
The behavioral variable employment-related motivational distortion (EMD) was defined and measured. In Study 1, a sample of 250 undergraduates completed the California Psychological Inventory (CPI), Form 434, on two separate occasions in which they responded (a) honestly and (b) as if applying for a job they valued. Four different change measures indexed participants’ response changes between the two conditions on a CPI-based scale measuring counter productivity (CPI-Cp). A composite of these four measures provided an EMD criterion, which enabled the development, in Study 2, of a 56-item CPI-based EMD predictor scale. On the basis of eight samples comprising a total Nof 2,074, internal consistency and test-retest reliability estimates for the CPI-EMD scale ranged between .72 and .86. Correlations with NEO PI-R domain and facet scales provided construct information about EMD. In Study 3, CPI-Cp scale scores adjusted for EMD manifested (a) reliability ranging from .71 to .87 over eight samples and (b) somewhat different correlations than for the unadjusted scale with Big Five personality scales. In addition, some evidence was found for gains in criterion correlations with EMD adjustments.
- Published
- 2005
22. Self-reported pain intensity with the numeric reporting scale in adult dengue
- Author
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Ee-Ling Ng, Joshua G. X. Wong, Siew Pang Chan, Robin Choo, David C. Lye, Yee Sin Leo, and Victor C. Gan
- Subjects
Male ,Pediatrics ,Abdominal pain ,Viral Diseases ,lcsh:Medicine ,Disease ,Dengue fever ,Dengue Fever ,Dengue ,Cohort Studies ,Medicine and Health Sciences ,Medicine ,Prospective Studies ,Young adult ,Prospective cohort study ,lcsh:Science ,Pain Measurement ,Singapore ,Multidisciplinary ,Middle Aged ,Infectious Diseases ,Research Design ,Cohort ,Physical Sciences ,Female ,Headaches ,medicine.symptom ,Statistics (Mathematics) ,Research Article ,Neglected Tropical Diseases ,Adult ,medicine.medical_specialty ,Clinical Research Design ,Cognitive Neuroscience ,Pain ,Biostatistics ,Research and Analysis Methods ,Young Adult ,Rating scale ,Diagnostic Medicine ,Humans ,Pain Management ,business.industry ,lcsh:R ,Biology and Life Sciences ,medicine.disease ,Tropical Diseases ,Abdominal Pain ,lcsh:Q ,Self Report ,business ,Mathematics ,Neuroscience - Abstract
Background Pain is a prominent feature of acute dengue as well as a clinical criterion in World Health Organization guidelines in diagnosing dengue. We conducted a prospective cohort study to compare levels of pain during acute dengue between different ethnicities and dengue severity. Methods Demographic, clinical and laboratory data were collected. Data on self-reported pain was collected using the 11-point Numerical Rating Scale. Generalized structural equation models were built to predict progression to severe disease. Results A total of 499 laboratory confirmed dengue patients were recruited in the Prospective Adult Dengue Study at Tan Tock Seng Hospital, Singapore. We found no statistically significant differences between pain score with age, gender, ethnicity or the presence of co-morbidity. Pain score was not predictive of dengue severity but highly correlated to patients’ day of illness. Prevalence of abdominal pain in our cohort was 19%. There was no difference in abdominal pain score between grades of dengue severity. Conclusion Dengue is a painful disease. Patients suffer more pain at the earlier phase of illness. However, pain score cannot be used to predict a patient’s progression to severe disease.
- Published
- 2013
23. Utility of warning signs in guiding admission and predicting severe disease in adult dengue
- Author
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Frederico Dimatatac, Victor C. Gan, Ying-Ying Hao, Chi Jong Go, Ee-Ling Ng, Kwoon-Yong Pok, Yee Sin Leo, David C. Lye, and Lee Ching Ng
- Subjects
Adult ,Male ,medicine.medical_specialty ,Admission ,Sensitivity and Specificity ,Dengue fever ,Dengue ,Cohort Studies ,Young Adult ,Utility ,Ambulatory care ,Positive predicative value ,medicine ,Warning signs ,Humans ,Prospective Studies ,Young adult ,Prospective cohort study ,Disease progression ,business.industry ,Middle Aged ,medicine.disease ,Hospitalization ,Infectious Diseases ,Emergency medicine ,Female ,Medical emergency ,business ,Research Article ,Cohort study - Abstract
Background The recommendation from the 2009 World Health Organization guidelines for managing dengue suggests that patients with any warning sign can be hospitalized for observation and management. We evaluated the utility of using warning signs to guide hospital admission and predict disease progression in adults. Methods We conducted a prospective cohort study from January 2010 to September 2012. Daily demographic, clinical and laboratory data were collected from adult dengue patients. Warning signs were recorded. The proportion of admitted patients using current admission criteria and warning signs was compared. The sensitivity, specificity, positive and negative predictive values of warning signs in predicting disease progression were also evaluated. Results Four hundred and ninety-nine patients with confirmed dengue were analyzed. Using warning signs instead of the current admission criteria will lead to a 44% and 31% increase in admission for DHF II-IV and SD cases respectively. The proportion of non-severe dengue cases which were admitted also increased by 32% for non DHF II-IV and 33% for non-SD cases. Absence of any warning signs had a NPV of 91%, 100% and 100% for DHF I-IV, DHF II-IV and SD. Of those who progressed to severe illness, 16.3% had warning signs on the same day while 51.3% had warning signs the day before developing severe illness, respectively. Conclusions Our findings demonstrated that patients without any warning signs can be managed safely with ambulatory care to reduce hospital resource burden. No single warning sign can independently predict disease progression. The window from onset of warning sign to severe illness in most cases was within one day.
- Published
- 2013
24. Rab GTPases regulating receptor trafficking at the late endosome-lysosome membranes
- Author
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Ee Ling, Ng, Bin Qi, Gan, Fanny, Ng, and Bor Luen, Tang
- Subjects
ErbB Receptors ,Protein Transport ,rab GTP-Binding Proteins ,Animals ,Humans ,Endosomes ,Intracellular Membranes ,Lysosomes ,Receptor, IGF Type 2 - Abstract
Lysosomes serve key degradative functions for the turnover of membrane lipids and protein components. Its biogenesis is principally dependent on exocytic traffic from the late endosome via the trans-Golgi network, and it also receives cargo to be degraded from the endocytic pathway. Membrane trafficking to the late endosome-lysosome is tightly regulated to maintain the amplitude of signalling events and cellular homeostasis. Key coordinators of lysosomal traffic include members of the Rab small GTPase family. Amongst these, Rab7, Rab9 and the more recently studied Rab22B/31 have all been reported to regulate membrane trafficking processed at the late endosome-lysosome system. We discuss what is known about the roles of these Rab proteins and their interacting partners on the regulation of traffic of important receptor proteins such as the epidermal growth factor receptor (EGFR) and the mannose 6-phosphate receptor (M6PR), in association with the late endosome-lysosome system. Better knowledge of EGFR and M6PR traffic in this regard may aid in understanding the pathological processes, such as oncogenic transformations associated with these receptors.
- Published
- 2011
25. Rab22B is expressed in the CNS astroglia lineage and plays a role in epidermal growth factor receptor trafficking in A431 cells
- Author
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Bor Luen Tang, Ee Ling Ng, Jun Jie Ng, and Fengyi Liang
- Subjects
Physiology ,Clinical Biochemistry ,Vesicular Transport Proteins ,Receptors, Cytoplasmic and Nuclear ,Nerve Tissue Proteins ,Endosomes ,Receptor, IGF Type 2 ,Rats, Sprague-Dawley ,Mice ,Epidermal growth factor ,Cell Line, Tumor ,Glial Fibrillary Acidic Protein ,medicine ,Animals ,Humans ,ERBB3 ,Epidermal growth factor receptor ,RNA, Small Interfering ,Cell Proliferation ,Glial fibrillary acidic protein ,biology ,Epidermal Growth Factor ,Cell Membrane ,Brain ,Cell Biology ,Nestin ,Embryo, Mammalian ,Molecular biology ,Cell biology ,Rats ,ErbB Receptors ,Mice, Inbred C57BL ,Protein Transport ,medicine.anatomical_structure ,rab GTP-Binding Proteins ,Astrocytes ,biology.protein ,Neuroglia ,A431 cells ,Astrocyte ,Protein Binding - Abstract
The expression profile and functions of the brain-enriched Rab22B/Rab31 small GTPase had remained uncharacterized. Using specific antibodies against Rab22B, we found the protein to be exceptionally enriched in nestin and RC2-positive radial glia of the embryonic mouse brain. In the adult brain, Rab22B is rather specifically expressed in glial fibrillary acidic protein (GFAP)-positive mature astrocytes, but is not clearly detectable in either 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNPase)-positive mature oligodendrocytes or betaIII-tubulin (TuJ)-positive neurons. In probing for specific functions of Rab22B, we found that Rab22B silencing in A431 cells resulted in abnormal trafficking of the epidermal growth factor receptor (EGFR), Texas-red-labeled EGF, and the cation-independent mannose 6-phosphate receptor (M6PR). Affinity pull-down assays and co-immunoprecipitation analysis indicated that Rab22B could associate with EGFR in a GTP-dependent manner. Rab22B is thus a Rab protein specifically expressed in the astroglia lineage and may have a role in regulating EGFR trafficking in some cell types. Given that EGFR signaling modulates astrocyte development and oncogenesis of multiple cell types, Rab22B may thus have specific developmental or pathophysiological roles in cell types which it is enriched in.
- Published
- 2009
26. Rabs and cancer cell motility
- Author
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Ee Ling Ng and Bor Luen Tang
- Subjects
Integrin ,GTPase ,Structural Biology ,Cell Movement ,Neoplasms ,Cell Adhesion ,Matrix Metalloproteinase 14 ,Animals ,Humans ,Neoplasm Invasiveness ,Epidermal growth factor receptor ,Transport Vesicles ,biology ,Effector ,Cell Biology ,Endocytosis ,Cell biology ,Vesicular transport protein ,ErbB Receptors ,Tumor progression ,rab GTP-Binding Proteins ,Cancer research ,biology.protein ,Guanine nucleotide exchange factor ,Rab ,Integrin alpha5beta1 - Abstract
The Rab family of small GTPases functions in regulating vesicular transport in all eukaryotes. In the past few years, several important reports have linked some members of the Rab family to intriguing mechanistic aspects of cancer cell migration and invasiveness. Rab5 and Rab21 associate with alpha-integrin subunits and modulate their endosomal traffic and subcellular localization. Expression of the latter enhances adhesion and migration of certain cancer cell types. Rab25 has been functionally linked to tumor progression and the invasiveness of some epithelial cancers. Rab25 promotes invasive migration of cells in three-dimensional microenvironments by associating with alpha5beta1 integrin, and directing its recycling to dynamic ruffling protrusions at the migrating cell front. Acting directly, or through its effector, the Rab-coupling protein, Rab25 could potentially engage both integrin and epidermal growth factor receptor and enhance their oncogenic recycling and signaling. Tumor invasiveness may also be modulated by Rab8-mediated exocytic traffic of MT1-matrix metalloproteinase, with the latter's activity likely influenced by interaction with the mammalian suppressor of Sec4 (Mss4), a Rab8 guanine nucleotide exchange factor, and integrin. We discuss highlights in the recent literature that point towards a role for Rab-mediated membrane traffic in cancer cell migration and invasion.
- Published
- 2009
27. Rab23: what exactly does it traffic?
- Author
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Ya, Wang, Ee Ling, Ng, and Bor Luen, Tang
- Subjects
Embryonic Development ,Models, Biological ,Smoothened Receptor ,Receptors, G-Protein-Coupled ,Mice ,Protein Transport ,Phenotype ,rab GTP-Binding Proteins ,Mutation ,Trans-Activators ,Animals ,Hedgehog Proteins ,Cilia ,Signal Transduction - Abstract
Rab23 is the product of the gene mutated in the mouse open brain1 phenotype, which displays neural tube defects. It appears to antagonize sonic hedgehog (Shh)-mediated signaling during mouse development, presumably by regulating the intracellular trafficking of one or more of Shh's-signaling components. The Shh receptor Patched1 (Ptch1) and its downstream effector Smoothened (Smo) were initial prime suspects as they are membrane proteins whose cellular dynamics are modulated by the Shh signal. However, Rab23 mutants do not appear to affect the localization and dynamics of either protein. Genetic analyses have now shown that Rab23 functions downstream of Smo and affects the function of the Shh-regulated Gli family of transcription factors in a more direct manner than previously thought. A plethora of proteins that influence Shh signaling and whose cellular trafficking could potentially be regulated by Rab23 has also emerged. These include members of the intraflagellar transport complex, as well as motor proteins responsible for their assembly at the cilia. Rab23 is also expressed in adult mouse neurons and may thus have functions beyond embryonic developmental stages and Shh signaling. We discuss these new findings and explore the myriad of possibilities whereby Rab23 may function.
- Published
- 2006
28. Open brain gene product Rab23: expression pattern in the adult mouse brain and functional characterization
- Author
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Ee Ling Ng, Ya Wang, Ting Wang, Anchen Guo, Felicia Yu Hsuan Teng, Kooi Hoong Chong, Bor Luen Tang, and Selina Aulia
- Subjects
Cerebellum ,media_common.quotation_subject ,Blotting, Western ,Gene Expression ,Transfection ,Gene product ,Cellular and Molecular Neuroscience ,Mice ,Epidermal growth factor ,medicine ,Neurites ,Animals ,Humans ,Small GTPase ,Tissue Distribution ,Sonic hedgehog ,Internalization ,Cells, Cultured ,media_common ,rab5 GTP-Binding Proteins ,Neurons ,Glial fibrillary acidic protein ,biology ,Age Factors ,Brain ,Gene Expression Regulation, Developmental ,Embryo, Mammalian ,Molecular biology ,Immunohistochemistry ,Endocytosis ,Cell biology ,medicine.anatomical_structure ,rab GTP-Binding Proteins ,Mutation ,biology.protein ,Rab ,Neuroglia ,Subcellular Fractions - Abstract
The gene mutated in the mouse open brain (opb) phenotype antagonizes sonic hedgehog-mediated signaling and encodes a small GTPase of the Rab family, Rab23. To date, the brain expression profile and exact mechanism of function of the Rab23 protein has remained unknown. Specific antibodies generated against Rab23 showed that the protein is highly enriched in the adult rodent brain and present in low levels in multiple tissues of the adult rodent. Rab23 is found in the cytosol as well as being associated with the plasma and endosomal membranes. In the adult mouse brain, Rab23 is found in βIII tubulin (TuJ) positive neuronal cell bodies and are most prominent in the cortex, hypothalamus and the cerebellum. It is, however, absent from glial fibrillary acidic protein (GFAP) positive astrocytes or CNPase positive oligodendrocytes. Despite the plasma membrane/endosomal membrane localization of Rab23, neither overexpression of the GTP-restricted nor the GDP-bound mutant forms affect internalization of transferrin or epidermal growth factor. Exogenous overexpression of Rab23 or its mutants also did not affect the morphological differentiation of thalamic neurons in culture. Expression of Rab23 in the adult brain is suggestive, however, of having a postnatal function beyond its role in embryonic development. © 2006 Wiley-Liss, Inc.
- Published
- 2006
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