103 results on '"David, J.S."'
Search Results
2. Ecology of planktonic ciliates in a changing world: Concepts, methods, and challenges
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Thomas Weisse and David J.S. Montagnes
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Ecology ,Oceans and Seas ,Phytoplankton ,Animals ,Ciliophora ,Plankton ,Microbiology ,Ecosystem ,Zooplankton - Abstract
Plankton ecologists ultimately focus on forecasting, both applied and environmental outcomes. We review how appreciating planktonic ciliates has become central to these predictions. We explore the 350-year-old canon on planktonic ciliates and examine its steady progression, which has been punctuated by conceptual insights and technological breakthroughs. By reflecting on this process, we offer suggestions as to where future leaps are needed, with an emphasis on predicting outcomes of global warming. We conclude that in terms of climate change research: (i) climatic hotspots (e.g. polar oceans) require attention; (ii) simply adding ciliate measurements to zooplankton/phytoplankton-based sampling programs is inappropriate; (iii) elucidating the rare biosphere's functional ecology requires culture-independent genetic methods; (iv) evaluating genetic adaptation (microevolution) and population composition shifts is required; (v) contrasting marine and freshwaters needs attention; (vi) mixotrophy needs attention; (vii) laboratory and field studies must couple automated measurements and molecular assessment of functional gene expression; (viii) ciliate trophic diversity requires appreciation; and (ix) marrying gene expression and function, coupled with climate change scenarios is needed. In short, continued academic efforts and financial support are essential to achieve the above; these will lead to understanding how ciliates will respond to climate change, providing tools for forecasting.
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- 2021
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3. Atypical COL3A1 variants (glutamic acid to lysine) cause vascular Ehlers–Danlos syndrome with a consistent phenotype of tissue fragility and skin hyperextensibility
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Angela F Brady, Margo Whiteford, Duncan Baker, Fleur S. van Dijk, Marie-Line Jacquemont, Peter Kannu, Lisa Robertson, F Michael Pope, Michael Frank, Deirdre Cilliers, Dominique P. Germain, Kate von Klemperer, David J.S. Hulmes, Elena Cervi, Henrietta Lefroy, Nigel Burrows, Anthony Vandersteen, Renarta Warburton, Anne Legrand, and Neeti Ghali
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Adult ,Male ,medicine.medical_specialty ,Lysine ,Glycine ,Glutamic Acid ,Connective tissue ,Genomics ,Biology ,medicine ,Humans ,Skin hyperextensibility ,Genetics (clinical) ,Aged ,Genetics ,High-Throughput Nucleotide Sequencing ,Glutamic acid ,Middle Aged ,medicine.disease ,Phenotype ,Pedigree ,Collagen Type III ,medicine.anatomical_structure ,Ehlers–Danlos syndrome ,Mutation ,Skin Abnormalities ,Medical genetics ,Ehlers-Danlos Syndrome ,Female - Abstract
The Ehlers–Danlos syndromes (EDS) are a group of rare inherited connective tissue disorders. Vascular EDS (vEDS) is caused by pathogenic variants in COL3A1, most frequently glycine substitutions. We describe the phenotype of the largest series of vEDS patients with glutamic acid to lysine substitutions (Glu>Lys) in COL3A1, which were all previously considered to be variants of unknown significance. Clinical and molecular data for seven families with three different Glu>Lys substitutions in COL3A1 were analyzed. These Glu>Lys variants were reclassified from variants of unknown significance to either pathogenic or likely pathogenic in accordance with American College of Medical Genetics and Genomics guidelines. All individuals with these atypical variants exhibited skin hyperextensibility as seen in individuals with classical EDS and classical-like EDS and evidence of tissue fragility as seen in individuals with vEDS. The clinical data demonstrate the overlap between the different EDS subtypes and underline the importance of next-generation sequencing gene panel analysis. The three different Glu>Lys variants point toward a new variant type in COL3A1 causative of vEDS, which has consistent clinical features. This is important knowledge for COL3A1 variant interpretation. Further follow-up data are required to establish the severity of tissue fragility complications compared with patients with other recognized molecular causes of vEDS.
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- 2019
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4. Roles of the procollagen C-propeptides in health and disease
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David J.S. Hulmes
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Fibrillar Collagens ,Trimer ,macromolecular substances ,Fibril ,Biochemistry ,Extracellular matrix ,03 medical and health sciences ,0302 clinical medicine ,Extracellular ,Humans ,Disulfides ,Protein Structure, Quaternary ,Protein precursor ,Molecular Biology ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Chemistry ,Collagen Diseases ,Peptide Fragments ,Amino acid ,Procollagen peptidase ,030220 oncology & carcinogenesis ,Mutation ,Protein Multimerization ,Procollagen ,Intracellular - Abstract
The procollagen C-propeptides of the fibrillar collagens play key roles in the intracellular assembly of procollagen molecules from their constituent polypeptides chains, and in the extracellular assembly of collagen molecules into fibrils. Here we review recent advances in understanding the molecular mechanisms controlling C-propeptide trimerization which have revealed the importance of inter-chain disulphide bonding and a small number of charged amino acids in the stability and specificity of different types of chain association. We also show how the crystal structure of the complex between the C-propeptide trimer of procollagen III and the active fragment of procollagen C-proteinase enhancer-1 leads to a detailed model for accelerating release of the C-propeptides from procollagen by bone morphogenetic protein-1 and related proteinases. We then discuss the effects of disease-related missense mutations in the C-propeptides in relation to the sites of these mutations in the three-dimensional structure. While in general there is a good correlation between disease severity and structure-based predictions, there are notable exceptions, suggesting new interactions involving the C-propeptides yet to be characterized. Mutations affecting proteolytic release of the C-propeptides from procollagen are discussed in detail. Finally, the roles of recently discovered interaction partners for the C-propeptides are considered during fibril assembly and cross-linking.
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- 2019
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5. THE ROLE of a BIKE FIT in CYCLISTS with HIP PAIN. A CLINICAL COMMENTARY
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David J.S. Wadsworth and Patrick C. Weinrauch
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musculoskeletal diseases ,medicine.medical_specialty ,Population ,Osteoarthritis ,01 natural sciences ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Hip pain ,In patient ,Clinical Commentary ,education ,Femoroacetabular impingement ,education.field_of_study ,biology ,Athletes ,business.industry ,010401 analytical chemistry ,030229 sport sciences ,biology.organism_classification ,medicine.disease ,0104 chemical sciences ,Management strategy ,Physical therapy ,business ,Physical therapist - Abstract
Hip pathology is common amongst athletes and the general population. The mechanics of cycling have the potential to exacerbate symptomatic hip pathology and progress articular pathology in patients with morphologic risk factors such as femoroacetabular impingement. A professional fit of the bicycle to the individual which aims to optimize hip joint function can allow patients with hip pathology to exercise in comfort when alternative high impact exercise such as running may not be possible. Conversely improper fit of the bicycle can lead to hip symptoms in otherwise healthy individuals who present with risk factors for hip pain. Accordingly a bike fit can form part of the overall management strategy in a cyclist with hip symptoms. The purpose of this clinical commentary is to discuss hip pathomechanics with respect to cycling, bicycle fitting methodology and the options available to a physical therapist to optimize hip mechanics during the pedaling action.
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- 2019
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6. Heat transfer model of fire protection fiberglass thermal barrier coated with thin aluminium layer
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David J.S. Pereira, Carlos Viegas, and Miguel R.O. Panão
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Fluid Flow and Transfer Processes ,Mechanical Engineering ,Condensed Matter Physics - Published
- 2022
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7. M13 bacteriophage purification using poly(ionic liquids) as alternative separation matrices
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M. Raquel Aires-Barros, David J.S. Patinha, Ana Azevedo, João Gonçalves, Maria João Jacinto, Isabel M. Marrucho, and Richard C. Willson
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Anions ,Phage display ,Polymers ,viruses ,Ionic Liquids ,02 engineering and technology ,Buffers ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Analytical Chemistry ,Bacteriophage ,chemistry.chemical_compound ,Imide ,Chromatography ,M13 bacteriophage ,Downstream processing ,Ion exchange ,biology ,Chemistry ,Organic Chemistry ,General Medicine ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Combinatorial chemistry ,0104 chemical sciences ,Yield (chemistry) ,Ionic liquid ,Adsorption ,0210 nano-technology ,Bacteriophage M13 - Abstract
M13 is a filamentous, non-lytic bacteriophage that infects Escherichia coli via the F pilus. Currently, phage M13 is widely used in phage display technology and bio-nanotechnology, and is considered a possible antibacterial therapeutic agent, among other applications. Conventional phage purification involves 5-7 operational steps, with high operational costs and significant product loss (approximately 60%). In this work, we propose a scalable purification process for M13 bacteriophage using a novel stationary phase based on a polymeric ionic liquid (PIL) with a positively charged backbone structure. Poly (1-vinyl-3-ethyl imidazolium bis(trifluoromethylsulfonyl) imide) - poly(VEIM-TFSI) predominantly acted as an anion exchanger under binding-elution mode. This revealed to be a rapid and simple method for the recovery of phage M13 with an overall separation yield of over 70% after a single downstream step. To the best of our knowledge, PILs have never been used as separation matrices for biological products and the results obtained, together with the large number of cations and anions available to prepare PILs, illustrate well the large potential of the proposed methodology.
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- 2018
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8. Minimally Invasive Repair of Ascending Aortic Pseudoaneurysms: An Alternative to Open Surgical Repair in High-Risk Patients
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Ravi N. Srinivasa, David J.S. Zucker, Eric H. Yang, Murray Kwon, Aaron Smith, and John M. Moriarty
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Adult ,Male ,medicine.medical_specialty ,Time Factors ,medicine.medical_treatment ,Risk Assessment ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Pseudoaneurysm ,Blood Vessel Prosthesis Implantation ,0302 clinical medicine ,Risk Factors ,medicine.artery ,Ascending aorta ,Occlusion ,Medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,cardiovascular diseases ,Aged ,Retrospective Studies ,Surgical repair ,Aged, 80 and over ,High risk patients ,business.industry ,Endovascular Procedures ,Stent ,Middle Aged ,Aortic surgery ,medicine.disease ,Embolization, Therapeutic ,Surgery ,Aortic Aneurysm ,Blood Vessel Prosthesis ,Treatment Outcome ,030220 oncology & carcinogenesis ,cardiovascular system ,Female ,Stents ,Cardiology and Cardiovascular Medicine ,business ,Complication ,Aneurysm, False - Abstract
Development of a pseudoaneurysm of the ascending aorta is an uncommon complication of aortic surgery. Several nonsurgical techniques are available for treatment of ascending aortic pseudoaneurysms (AAPs). This report outlines a single-center retrospective experience with 14 nonsurgical procedures for treatment of AAPs in 10 patients. Modified stent grafts, septal defect occlusion devices, coil embolics, and liquid embolics were deployed by transthoracic and endovascular approaches. Complete stasis of the AAP was achieved in 7 of 10 patients (70%). Mean postprocedural recoveries occurred within 3.5 days. Nonsurgical techniques for repair of AAPs offer a comparatively safe and effective alternative to open surgical repair.
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- 2019
9. Transient washout of hepatic hemangiomas: Potential pitfall mimicking malignancy
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Anuj Patel, Donald G. Mitchell, Pooja H. Doshi, David J.S. Becker-Weidman, and Thomas A. Hope
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lcsh:Medical physics. Medical radiology. Nuclear medicine ,Pathology ,medicine.medical_specialty ,Blood pool ,High-flow hepatic hemagioma ,lcsh:R895-920 ,Case Report ,Malignancy ,Eovist ,030218 nuclear medicine & medical imaging ,Gadoxetate Disodium ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Radiology, Nuclear Medicine and imaging ,Washout ,business.industry ,Small volume ,medicine.disease ,eye diseases ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Radiology ,sense organs ,business ,Liver parenchyma ,MRI - Abstract
Hemangiomas are the most common tumor of the liver and distinguishing them from malignancy is important. This is a report of 3 hemangiomas in 2 patients that exhibit transient washout of gadoxetate disodium (Eovist), relative to blood pool and liver parenchyma, a characteristic that is used to diagnose hepatocellular carcinoma in at-risk patients. It is important to recognize that high-flow hemangiomas can exhibit transient washout when using a small volume of injected contrast agent. This finding is unlikely to be present on CT examinations because of the larger volume of contrast administered.
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- 2016
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10. New Low-Toxicity Cholinium-Based Ionic Liquids with Perfluoroalkanoate Anions for Aqueous Biphasic System Implementation
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Hugo R. Soares, Isabel M. Marrucho, Liliana C. Tomé, Catarina Florindo, Ana S. Coroadinha, and David J.S. Patinha
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chemistry.chemical_classification ,Aqueous solution ,Low toxicity ,010405 organic chemistry ,Renewable Energy, Sustainability and the Environment ,General Chemical Engineering ,General Chemistry ,010402 general chemistry ,Ternary phase ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Chain length ,chemistry ,Ionic liquid ,Environmental Chemistry ,Organic chemistry ,Salting out ,Solubility ,Alkyl - Abstract
This work explores the widening of properties of cholinium-based ionic liquids (ILs) through their combination with perfluoroalkanoate anions so that higher number of aqueous biphasic systems (ABSs) containing nontoxic cholinium-based ILs is available. For that purpose, six cholinium perfluoroalkanoate ILs were synthesized and their cytotoxicity was evaluated using three different animal cell lines, envisaging biotechnology applications. Ternary phase equilibrium data for ABSs composed of the cholinium perfluoroalkanoate, with fluoroalkyl chains from C2 up to C7, using a strong salting out agent, K3PO4, were determined at 25 °C. The results show the relevant role of the size of fluorinated alkyl chain length in the anion since, contrary to other ABSs containing ILs with increasing alkyl chain length in the anion, the ABSs with cholinium perfluoroalkanoates present well-spaced solubility curves, allowing the conclusion that these ABSs can be tuned by a proper choice of the IL. The phase splitting mechanism...
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- 2016
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11. Understanding Body MRI Sequences and Their Ability to Characterize Tissues
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Christopher G. Roth, Chad Silverberg, Anuj Patel, David J.S. Becker-Weidman, and Sandeep Deshmukh
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Pathology ,medicine.medical_specialty ,medicine ,Fibrous tissue ,Computational biology ,Biology - Abstract
Familiarity with how MRI sequences can distinguish different tissues when coupled with an understanding of pathology aids in narrowing differentials or making a specific diagnosis. Utilizing specific MRI pulse sequences allows for identification of key tissue substances such as fat, paramagnetic substances, protein, fibrous tissue, or free or bound water. The identification of these tissue substances allows the radiologist to form narrow or specific diagnoses efficiently. A tissue-based approach to understanding MRI sequences allows the radiologist to both systematically and effectively interpret MRIs despite the large number of pulse sequences particularly in basic MRI body protocols.
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- 2016
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12. COL1A1 C-propeptide mutations cause ER mislocalization of procollagen and impair C-terminal procollagen processing
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Catherine Moali, Joan C. Marini, David R. Eyre, Elena Makareeva, Aileen M. Barnes, Sergey Leikin, Emmanuel Bettler, Marina Brusel, John Cassella, Wayne A. Cabral, David J.S. Hulmes, Aarthi Ashok, Efrat Kessler, MaryAnn Weis, Laboratoire de Biologie Tissulaire et d'ingénierie Thérapeutique UMR 5305 (LBTI), Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)
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0301 basic medicine ,Collagen helix ,Mutant ,Mutation, Missense ,[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,macromolecular substances ,Matrix (biology) ,Fibril ,Endoplasmic Reticulum ,Collagen Type I ,Article ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Molecular Biology ,ComputingMilieux_MISCELLANEOUS ,Cells, Cultured ,integumentary system ,Calorimetry, Differential Scanning ,Chemistry ,Osteoblast ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,[SDV.BDD.MOR]Life Sciences [q-bio]/Development Biology/Morphogenesis ,Endoplasmic reticulum localization ,Fibroblasts ,Osteogenesis Imperfecta ,medicine.disease ,Cell biology ,Protein Structure, Tertiary ,Collagen Type I, alpha 1 Chain ,Procollagen peptidase ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,030104 developmental biology ,medicine.anatomical_structure ,[SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics ,Microscopy, Fluorescence ,Osteogenesis imperfecta ,Molecular Medicine ,030217 neurology & neurosurgery ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology ,Procollagen - Abstract
Mutations in the type I procollagen C-propeptide occur in ~6.5% of Osteogenesis Imperfecta (OI) patients. They are of special interest because this region of procollagen is involved in α chain selection and folding, but is processed prior to fibril assembly and is absent in mature collagen fibrils in tissue. We investigated the consequences of seven COL1A1 C-propeptide mutations for collagen biochemistry in comparison to three probands with classical glycine substitutions in the collagen helix near the C-propeptide and a normal control. Procollagens with C-propeptide defects showed the expected delayed chain incorporation, slow folding and overmodification. Immunofluorescence microscopy indicated that procollagen with C-propeptide defects was mislocalized to the ER lumen, in contrast to the ER membrane localization of normal procollagen and procollagen with helical substitutions. Notably, pericellular processing of procollagen with C-propeptide mutations was defective, with accumulation of pC-collagen and/or reduced production of mature collagen. In vitro cleavage assays with BMP-1 ± PCPE-1 confirmed impaired C-propeptide processing of procollagens containing mutant proα1(I) chains. Overmodified collagens were incorporated into the matrix in culture. Dermal fibrils showed alterations in average diameter and diameter variability and bone fibrils were disorganized. Altered ER-localization and reduced pericellular processing of defective C-propeptides are expected to contribute to abnormal osteoblast differentiation and matrix function, respectively.
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- 2018
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13. Poly(ionic liquid) embedded particles as efficient solid phase microextraction phases of polar and aromatic analytes
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Isabel M. Marrucho, David J.S. Patinha, Armando J. D. Silvestre, Kari Vijayakrishna, and Pothanagandhi Nellepalli
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Gas chromatography ,Polydimethylsiloxane ,Chemistry ,010401 analytical chemistry ,Inorganic chemistry ,Poly(ionic liquids) ,Chain transfer ,Solid phase microextraction ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Solid-phase microextraction ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Styrene ,chemistry.chemical_compound ,Polymerization ,Bromide ,Alcohols ,Ionic liquid ,0210 nano-technology ,Imide ,Increased Surface Area ,BTEX - Abstract
In this work, a facile preparation of SPME fibers with increased surface area is presented. The SPME fibers were prepared by grinding poly(ionic liquids) (PILs) to obtain particles of 1–16 µm and, with the aid of a silicon adhesive, attach these particles to a steel wire support. Three different PILs, poly(1-vinyl-3-benzylimidazolium-co-styrene bromide) [poly(ViBnIm-co-Sty Br)], poly(1-vinyl-3-benzylimidazolium-co-styrene bis(trifluoromethanesulfonyl)imide) [poly(ViBnIm-co-Sty TFSI)] and poly(diallyldimethylamine bis(trifluoromethanesulfonyl)imide) [poly(Pyrr11 TFSI)], were used. The first two PILs were obtained by reversible addition–fragmentation chain transfer polymerization followed by metathesis reactions. The thicknesses of the prepared fibers were found to be 19 ± 4 µm and 85% of the particles used have diameters between 2 and 10 µm. The prepared fibers were tested by performing the headspace extraction of two standard solutions, one containing a mixture of alcohols with different chain lengths, and the other a mixture of aromatic compounds, leading to sorption times of 10 – 15 min due the large surface area attained with this method. PILs with aromatic moieties containing the bromide anion showed high selectivity towards polar compounds, due to the hydrogen basicity of the anion, and also towards aromatic analytes, due to the aromatic nature of styrene moieties and the cation pendant groups. The limits of detection fall in the sub ppb level, while relative standard deviations and reproducibility from fiber-to-fiber found maximums of 16.2% and 22.5%, respectively. Furthermore, the PIL based fibers showed up to 90% higher extraction efficiencies compared to the commercial fibers of polydimethylsiloxane and polyacrylate.
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- 2018
14. Differentiation of lipid-poor adrenal adenomas from non-adenomas with magnetic resonance imaging: Utility of dynamic, contrast enhancement and single-shot T2-weighted sequences
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Diego R. Martin, Bobby Kalb, Kim Sungjin, Zhengjia Chen, Pardeep Mittal, David J.S. Becker-Weidman, Peter A. Harri, Alton B. Farris, and Hina Arif-Tiwari
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Adenoma ,Adult ,Male ,medicine.medical_specialty ,Adrenal Gland Neoplasms ,Contrast Media ,Sensitivity and Specificity ,Diagnosis, Differential ,Lesion ,Young Adult ,Imaging, Three-Dimensional ,Meglumine ,Adrenal Glands ,Organometallic Compounds ,medicine ,Humans ,Adrenal adenoma ,Radiology, Nuclear Medicine and imaging ,Aged ,Retrospective Studies ,Aged, 80 and over ,Observer Variation ,medicine.diagnostic_test ,business.industry ,Single shot ,Magnetic resonance imaging ,Retrospective cohort study ,General Medicine ,Middle Aged ,Image Enhancement ,medicine.disease ,Lipids ,Magnetic Resonance Imaging ,Confidence interval ,Female ,Radiology ,medicine.symptom ,T2 weighted ,business - Abstract
Purpose To evaluate the utility of dynamic, contrast-enhanced magnetic resonance imaging (MRI) in combination with single-shot T2-weighted (ssT2) sequences in the differentiation of lipid-poor adrenal adenomas from non-adenomas. Materials and methods This retrospective study was approved by the institutional review board and is HIPAA compliant. Between January 2007 and December 2010, 46 patients with MRI demonstrating a lipid-poor adrenal lesion who underwent either surgical resection or a minimum of 24 months of imaging follow-up were identified retrospectively. All images were retrospectively reviewed in blinded fashion by two radiologists. Each adrenal lesion was categorized by dynamic enhancement features and qualitative signal on ssT2 images and was categorized as an adenoma if it demonstrated homogenous enhancement in the arterial phase, washout with capsule enhancement in the delayed phase, and T2 signal isointense to normal adrenal tissue. Any lesion that did not fulfill all the criteria was classified as a non-adenoma. Sensitivity, specificity, positive predictive value, negative predictive value, and accuracy for characterization of adenoma were calculated for each reader with 95% confidence intervals. A κ test assessed level of agreement between readers. Results Application of our criteria lead to an MRI diagnosis of lipid-poor adrenal adenoma with a sensitivity of 84.2–89.5% (16/19–17/19), specificity of 96.3% (26/27), positive predictive value of 94.1–94.4% (16/17–17/18), negative predictive value of 89.7–92.9% (26/29–26/28), and accuracy of 91.3–93.5% (42/46–43/46). Agreement between the two readers showed substantial κ agreement for the differentiation of adenoma from non-adenoma. Conclusions Dynamic, contrast-enhanced T1-weighted three-dimensional gradient echo sequences in combination with ssT2 images can accurately differentiate lipid-poor adrenal adenomas from non-adenomas.
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- 2015
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15. The role of water in cholinium carboxylate ionic liquid’s aqueous solutions
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Liliana C. Tomé, Cristina Silva Pereira, Luís Paulo N. Rebelo, Helga Garcia, Isabel M. Marrucho, Rui Ferreira, and David J.S. Patinha
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chemistry.chemical_classification ,Aqueous solution ,Inorganic chemistry ,Solvation ,Medicinal chemistry ,Atomic and Molecular Physics, and Optics ,Ion ,chemistry.chemical_compound ,Malonate ,chemistry ,Ionic liquid ,Proton NMR ,General Materials Science ,Carboxylate ,Physical and Theoretical Chemistry ,Alkyl - Abstract
Binary systems composed of water and cholinium carboxylate ionic liquids, namely cholinium lactate ([Ch][Lac]), cholinium propanoate ([Ch][Prop]) and cholinium malonate ([Ch][Mal]) were studied from the neat ionic liquid to very diluted aqueous solutions. Densities and viscosities were measured and atypical behaviors were observed, such as the increasing density of the binary [Ch][Prop] + H2O mixtures with increasing water content. In order to get molecular level insights on the IL + H2O solvation schemes, 1H NMR studies were performed. Large deviations were obtained in the anions resonances when compared to those of the cation suggesting that water interacts preferentially with the anion counter-part of the ionic liquid. The increasing density of [Ch][Prop] + H2O system with increasing water content can be related to the orientation of the alkyl chains, as a result of their nanoscale organization. This behavior was confirmed through the study of the thermophysical properties of [Ch][Hex] + H2O mixtures, where this phenomenon is known to occur.
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- 2015
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16. Clinical, structural, biochemical and X-ray crystallographic correlates of pathogenicity for variants in the C-propeptide region of theCOL3A1gene
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Neeti Ghali, David J.S. Hulmes, Frances Elmslie, Anthony Vandersteen, Philip Sawle, Simon T. Holden, Alex Henderson, Natasha S. Stembridge, F. Michael Pope, Mandy Nesbitt, Rebecca C. Pollitt, and David J. P. Ferguson
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Adult ,Male ,Genetics ,Mutation ,Protein Conformation ,Collagen helix ,Perforation (oil well) ,Exons ,Biology ,Crystallography, X-Ray ,medicine.disease_cause ,medicine.disease ,Peptide Fragments ,Exon ,Procollagen peptidase ,Collagen Type III ,Osteogenesis imperfecta ,Collagen disorder ,medicine ,Humans ,Missense mutation ,Ehlers-Danlos Syndrome ,Female ,Genetics (clinical) - Abstract
Vascular Ehlers–Danlos syndrome (vEDS) is a heritable disorder of connective tissue caused by pathological variants in the COL3A1 gene, which encodes the α1 chain of type III collagen. Type III collagen is a major component of skin, arterial walls, and the gastrointestinal tract. Collagen III protein deficiency manifests as an increased risk of rupture, perforation, and dissection of these structures. The most disruptive gene variants affect the collagen helix via glycine substitutions or splice donor site mutations. The C-propeptide region of COL3A1 includes exons 49–52 and has a crucial role in initiating the C-terminal assembly of procollagen monomers in the early stages of collagen biosynthesis. Nineteen COL3A1 variants have previously been reported in these exons, of which four were associated with a severe vEDS phenotype. We identified two novel C-propeptide missense variants; p.Pro1440Leu, p.Arg1432Leu, and a non-stop mutation, c.4400A > T, p. (*1467Leuext*45). These variants produce variable phenotypes ranging from obvious acrogeria to classical or hypermobile EDS. A previously reported variant p.Lys1313Arg is of unknown clinical significance but likely benign, based on this study. Assigning disease pathogenicity remains complex, clinical phenotyping and crystal structure evidence being crucial. We briefly compare reported phenotypes for patients with missense variants in the C-propeptide domain for other human collagen disorders including COL1A1 and COL1A2 (osteogenesis imperfecta). © 2015 Wiley Periodicals, Inc.
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- 2015
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17. Expanding the Applicability of Poly(Ionic Liquids) in Solid Phase Microextraction: Pyrrolidinium Coatings
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David J.S. Patinha, Mehmet Isik, David Mecerreyes, Liliana C. Tomé, Armando J. D. Silvestre, and Isabel M. Marrucho
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steel coatings ,Materials science ,sorbent coatings ,gas chromatography ,polymeric ionic liquid ,water ,02 engineering and technology ,fibers ,Solid-phase microextraction ,chemistry ,lcsh:Technology ,01 natural sciences ,Article ,chemistry.chemical_compound ,poly(ionic liquids) ,General Materials Science ,Thermal stability ,lcsh:Microscopy ,lcsh:QC120-168.85 ,Chromatography ,lcsh:QH201-278.5 ,Polydimethylsiloxane ,lcsh:T ,010401 analytical chemistry ,Extraction (chemistry) ,Sorption ,021001 nanoscience & nanotechnology ,solid phase microextraction ,0104 chemical sciences ,Photopolymer ,lcsh:TA1-2040 ,silica ,Ionic liquid ,extraction ,systems ,lcsh:Descriptive and experimental mechanics ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,Gas chromatography ,UV-photopolymerization ,lcsh:Engineering (General). Civil engineering (General) ,0210 nano-technology ,lcsh:TK1-9971 ,Nuclear chemistry - Abstract
Crosslinked pyrrolidinium-based poly(ionic liquids) (Pyrr-PILs) were synthesized through a fast, simple, and solventless photopolymerization scheme, and tested as solid phase microextraction (SPME) sorbents. A series of Pyrr-PILs bearing three different alkyl side chain lengths with two, eight, and fourteen carbons was prepared, characterized, and homogeneously coated on a steel wire by using a very simple procedure. The resulting coatings showed a high thermal stability, with decomposition temperatures above 350 degrees C, excellent film stability, and lifetime of over 100 injections. The performance of these PIL-based SPME fibers was evaluated using a mixture of eleven organic compounds with different molar volumes and chemical functionalities (alcohols, ketones, and monoterpenes). The Pyrr-PIL fibers were obtained as dense film coatings, with 67 mu m thickness, with an overall sorption increase of 90% and 55% as compared to commercial fibers of Polyacrylate (85 mu m) (PA85) and Polydimethylsiloxane (7 mu m) (PDMS7) coatings, respectively. A urine sample doped with the sample mixture was used to study the matrix effect and establish relative recoveries, which ranged from 60.2% to 104.1%. David J. S. Patinha, and Liliana C. Tome are grateful to FCT (Fundacao para a Ciencia e a Tecnologia) for the PhD research grant SFRH/BD/97042/2013 and the Post-Doctoral research grant (SFRH/BPD/101793/2014), respectively. David J. S. Patinha also thanks the financial support from COST-Exil Project 1206. The NMR data was acquired at CERMAX (Centro de Ressonncia Magnetica Antnio Xavier) which is a member of the National NMR network. This work was partially supported by FCT through Research Unit GREEN-it " Bioresources for Sustainability" (UID/Multi/04551/2013) and the Associate Laboratory CICECO Aveiro Institute of materials (UID/CTM/50011/2013).
- Published
- 2017
18. Imaging Surveillance in Patients After a Benign Fine-Needle Aspiration Biopsy of the Thyroid: Associated Cost and Incidence of Subsequent Cancer
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Laurence Parker, Neil Malhotra, David F Reilly, Naveen Selvam, Levon N. Nazarian, and David J.S. Becker-Weidman
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,medicine.medical_treatment ,Cost-Benefit Analysis ,Biopsy, Fine-Needle ,030209 endocrinology & metabolism ,Sensitivity and Specificity ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Risk Factors ,Biopsy ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,030212 general & internal medicine ,Thyroid Neoplasms ,Watchful Waiting ,Thyroid cancer ,Aged ,Ultrasonography ,Aged, 80 and over ,medicine.diagnostic_test ,business.industry ,Medical record ,Incidence ,Thyroid ,Cancer ,Reproducibility of Results ,General Medicine ,Health Care Costs ,Middle Aged ,Pennsylvania ,medicine.disease ,Institutional review board ,Fine-needle aspiration ,medicine.anatomical_structure ,Population Surveillance ,Female ,Radiology ,Neoplasm Recurrence, Local ,business ,Watchful waiting - Abstract
The objective of our study was to determine patterns and cost of imaging tumor surveillance in patients after a benign fine-needle aspiration (FNA) biopsy of the thyroid in a large teaching hospital as well as the rate of subsequent cancer detection.This cohort study was approved by the appropriate institutional review board and complied with HIPAA. All patients who had a benign thyroid FNA biopsy between January 1, 1999, and December 31, 2003, were identified from an institutional pathology database. We gathered information from electronic medical records on imaging tumor surveillance and subsequent cancer detection. Cost was determined using the facility total relative value unit and the 2014 Hospital Outpatient Prospective Payment System conversion factor.Between January 1, 1999, and December 31, 2003, 1685 patients had a benign thyroid FNA biopsy, 800 (47.5%) of whom underwent follow-up imaging. These patients underwent 2223 thyroid ultrasound examinations, 606 ultrasound-guided thyroid FNA biopsies, 78 thyroid scintigraphy examinations, 168 neck CTs, and 53 neck MRIs at a cost of $529,874, $176,157, $39,622, $80,580, and $53,114, respectively, for a total cost of $879,347 or $1099 per patient. The mean length of follow-up was 7.3 years, during which time 19 (2.4%) patients were diagnosed with thyroid cancer at a cost of $46,281 per cancer. Seventeen (89.5%) were diagnosed with papillary carcinoma and two (10.5%) with Hurthle cell carcinoma.Over a 5-year period, about half of the patients who had a benign thyroid FNA biopsy underwent follow-up imaging at considerable cost with a small rate of subsequent malignancy.
- Published
- 2016
19. Hepatocellular carcinoma after locoregional therapy: Magnetic resonance imaging findings in falsely negative exams
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Sandeep Deshmukh, Christopher G. Roth, Steven K. Herrine, Laurence Parker, Donald G. Mitchell, Jesse Civan, and David J.S. Becker-Weidman
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medicine.medical_specialty ,Pathology ,Hepatology ,medicine.diagnostic_test ,business.industry ,education ,nutritional and metabolic diseases ,Magnetic resonance imaging ,equipment and supplies ,medicine.disease ,digestive system diseases ,nervous system diseases ,030218 nuclear medicine & medical imaging ,Tumor recurrence ,03 medical and health sciences ,0302 clinical medicine ,Text mining ,Retrospective Study ,Hepatocellular carcinoma ,Medicine ,030211 gastroenterology & hepatology ,Radiology ,business ,human activities - Abstract
To elucidate causes for false negative magnetic resonance imaging (MRI) exams by identifying imaging characteristics that predict viable hepatocellular carcinoma (HCC) in lesions previously treated with locoregional therapy when obvious findings of recurrence are absent.This retrospective institutional review board-approved and Health Insurance Portability and Accountability Act-compliant study included patients who underwent liver transplantation at our center between 1/1/2000 and 12/31/2012 after being treated for HCC with locoregional therapy. All selected patients had a contrast-enhanced MRI after locoregional therapy within 90 d of transplant that was prospectively interpreted as without evidence of residual or recurrent tumor. Retrospectively, 2 radiologists, blinded to clinical and pathological data, independently reviewed the pre-transplant MRIs for 7 imaging features. Liver explant histopathology provided the reference standard, with clinically significant tumor defined as viable tumor ≥ 1.0 cm in maximum dimension. Fisher's exact test was first performed to identify significant imaging features.Inclusion criteria selected for 42 patients with 65 treated lesions. Fourteen of 42 patients (33%) and 16 of 65 treated lesions (25%) had clinically significant viable tumor on explant histology. None of the 7 imaging findings examined could reliably and reproducibly determine which treated lesion had viable tumor when the exam had been prospectively read as without evidence of viable HCC.After locoregional therapy some treated lesions that do not demonstrate any MRI evidence of HCC will contain viable tumor. As such even patients with a negative MRI following treatment should receive regular short-term imaging surveillance because some have occult viable tumor. The possibility of occult tumor should be a consideration when contemplating any action which might delay liver transplant.
- Published
- 2016
20. Sizzled Is Unique among Secreted Frizzled-related Proteins for Its Ability to Specifically Inhibit Bone Morphogenetic Protein-1 (BMP-1)/Tolloid-like Proteinases
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David J.S. Hulmes, Jean-Marie Bourhis, Cécile Bijakowski, Christoph Becker-Pauly, Walter Stöcker, Pascaline Lécorché, Irene Yiallouros, Catherine Moali, Sandrine Vadon-Le Goff, Vincent Dive, Florence Ruggiero, and Frédéric Delolme
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Models, Molecular ,Proteases ,Frizzled ,animal structures ,Molecular Sequence Data ,Xenopus ,Xenopus Proteins ,Biochemistry ,Bone morphogenetic protein 1 ,Bone Morphogenetic Protein 1 ,Mice ,Xenopus laevis ,medicine ,Animals ,Humans ,Protease Inhibitors ,Amino Acid Sequence ,Molecular Biology ,Zebrafish ,Glycoproteins ,Sequence Homology, Amino Acid ,biology ,Extracellular matrix assembly ,fungi ,Intracellular Signaling Peptides and Proteins ,Tissue Inhibitor of Metalloproteinases ,Cell Biology ,Surface Plasmon Resonance ,biology.organism_classification ,Matrix Metalloproteinases ,Recombinant Proteins ,Extracellular Matrix ,Wnt Proteins ,Mechanism of action ,embryonic structures ,Enzymology ,Signal transduction ,medicine.symptom ,Peptide Hydrolases ,Signal Transduction - Abstract
BMP-1/tolloid-like proteinases (BTPs) are major enzymes involved in extracellular matrix assembly and activation of bioactive molecules, both growth factors and anti-angiogenic molecules. Although the control of BTP activity by several enhancing molecules is well established, the possibility that regulation also occurs through endogenous inhibitors is still debated. Secreted frizzled-related proteins (sFRPs) have been studied as possible candidates, with highly contradictory results, after the demonstration that sizzled, a sFRP found in Xenopus and zebrafish, was a potent inhibitor of Xenopus and zebrafish tolloid-like proteases. In this study, we demonstrate that mammalian sFRP-1, -2, and -4 do not modify human BMP-1 activity on several of its known substrates including procollagen I, procollagen III, pN-collagen V, and prolysyl oxidase. In contrast, Xenopus sizzled appears as a tight binding inhibitor of human BMP-1, with a K(i) of 1.5 ± 0.5 nM, and is shown to strongly inhibit other human tolloid isoforms mTLD and mTLL-1. Because sizzled is the most potent inhibitor of human tolloid-like proteinases known to date, we have studied its mechanism of action in detail and shown that the frizzled domain of sizzled is both necessary and sufficient for inhibitory activity and that it acts directly on the catalytic domain of BMP-1. Residues in sizzled required for inhibition include Asp-92, which is shared by sFRP-1 and -2, and also Phe-94, Ser-43, and Glu-44, which are specific to sizzled, thereby providing a rational basis for the absence of inhibitory activity of human sFRPs.
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- 2012
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21. Interaction of complement defence collagens C1q and MBL with BMP-1/tolloid-like proteinases
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Sylvie Ricard-Blum, Sandrine Vadon-Le Goff, Catherine Moali, Nicole M. Thielens, Evelyne Gout, Monique Lacroix, Agnès Tessier, Alexander Nyström, Chantal Dumestre-Pérard, Leena Bruckner-Tuderman, and David J.S. Hulmes
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Immunology ,Biology ,Molecular Biology ,Complement (complexity) ,Cell biology - Published
- 2017
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22. Use of magnetically oriented orthogonal collagen scaffolds for hemi-corneal reconstruction and regeneration
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Marilyne Malbouyres, Virginie Justin, Carole Burillon, David J.S. Hulmes, Florence Ruggiero, Odile Damour, Hélène Janin-Manificat, Jim Torbet, Marie-Rose Rovere, Graziella Pellegrini, and Nicolas Builles
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Keratinocytes ,Male ,Scaffold ,Materials science ,Biophysics ,Bioengineering ,Fibril ,Cornea ,Biomaterials ,Extracellular matrix ,Magnetics ,Implants, Experimental ,Stroma ,medicine ,Animals ,Humans ,Regeneration ,Limbal stem cell ,Cells, Cultured ,Tissue Scaffolds ,Stem Cells ,Regeneration (biology) ,Epithelium ,medicine.anatomical_structure ,Mechanics of Materials ,Ceramics and Composites ,Collagen ,Rabbits ,Biomedical engineering - Abstract
We recently showed that the highly organized architecture of the corneal stroma could be reproduced using scaffolds consisting of orthogonally aligned multilayers of collagen fibrils prepared using a high magnetic field. Here we show that such scaffolds permit the reconstruction in vitro of human hemi-corneas (stroma + epithelium), using primary human keratocytes and limbal stem cell derived human keratinocytes. On the surface of these hemi-corneas, a well-differentiated epithelium was formed, as determined both histologically and ultrastructurally and by the expression of characteristic markers. Within the stroma, the keratocytes aligned with the directions of the fibrils in the scaffold and synthesized a new extracellular matrix with typical collagen markers and small, uniform diameter fibrils. Finally, in vivo experiments using a rabbit model showed that these orthogonally oriented multi-layer scaffolds could be used to repair the anterior region of the stroma, leading to re-epithelialization and recovery of both transparency and ultrastructural organization.
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- 2010
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23. Role of the Netrin-like Domain of Procollagen C-Proteinase Enhancer-1 in the Control of Metalloproteinase Activity
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Alain Colige, Sandrine Vadon-Le Goff, Bernard Font, Cécile Bijakowski, Daniel Kronenberg, Hideaki Nagase, Gillian Murphy, Catherine Moali, David J.S. Hulmes, Ngee Han Lim, Mourad Bekhouche, and Efrat Kessler
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Glycobiology and Extracellular Matrices ,Matrix metalloproteinase ,Biochemistry ,BONE MORPHOGENETIC PROTEIN-1 ,Adamalysin ,FIBRILLAR PROCOLLAGENS ,Tolloid Proteinase ,Extracellular Matrix Proteins ,0303 health sciences ,ADAMTS ,FRIZZLED-RELATED PROTEINS ,030302 biochemistry & molecular biology ,Tissue Inhibitor of Metalloproteinases ,11 Medical And Health Sciences ,ALPHA-CONVERTING-ENZYME ,I PROCOLLAGEN ,ADAM Proteins ,Extracellular Matrix ,PLASMINOGEN ACTIVATION ,Collagen ,03 Chemical Sciences ,Life Sciences & Biomedicine ,Procollagen ,Biochemistry & Molecular Biology ,TERMINAL DOMAIN ,Tolloid-Like Metalloproteinases ,Biology ,Bone morphogenetic protein 1 ,Cell Line ,03 medical and health sciences ,Disintegrin ,Humans ,HUMAN TISSUE INHIBITOR ,Matrix Metalloproteinase ,Molecular Biology ,Glycoproteins ,030304 developmental biology ,Thrombospondin ,Science & Technology ,Heparin ,ADAM ,Cell Biology ,06 Biological Sciences ,MATRIX-METALLOPROTEINASES ,Protein Structure, Tertiary ,Procollagen peptidase ,SULFATED GLYCOSAMINOGLYCANS ,Enzymology ,biology.protein - Abstract
The netrin-like (NTR) domain is a feature of several extracellular proteins, most notably the N-terminal domain of tissue inhibitors of metalloproteinases (TIMPs), where it functions as a strong inhibitor of matrix metalloproteinases and some other members of the metzincin superfamily. The presence of a C-terminal NTR domain in procollagen C-proteinase enhancers (PCPEs), proteins that stimulate the activity of astacin-like tolloid proteinases, raises the possibility that this might also have inhibitory activity. Here we show that both long and short forms of the PCPE-1 NTR domain, the latter beginning at the N-terminal cysteine known to be critical for TIMP activity, show no inhibition, at micromolar concentrations, of several members of the metzincin superfamily, including matrix metalloproteinase-2, bone morphogenetic protein-1 (a tolloid proteinase), and different ADAMTS (a disintegrin and a metalloproteinase with thrombospondin motifs) proteinases from the adamalysin family. In contrast, we report that the NTR domain within PCPE-1 leads to superstimulation of bone morphogenetic protein-1 activity in the presence of heparin and heparan sulfate. These observations point to a new mechanism whereby binding to cell surface-associated or extracellular heparin-like sulfated glycosaminoglycans might provide a means to accelerate procollagen processing in specific cellular and extracellular microenvironments.
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- 2010
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24. Strong Cooperativity and Loose Geometry between CUB Domains Are the Basis for Procollagen C-Proteinase Enhancer Activity
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Bernard Font, Catherine Moali, Jean-Marie Bourhis, Daniel Kronenberg, David J.S. Hulmes, Sandrine Vadon-Le Goff, and Denise Eichenberger
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Cooperativity ,Plasma protein binding ,Transfection ,Binding, Competitive ,Biochemistry ,Bone morphogenetic protein 1 ,Bone Morphogenetic Protein 1 ,Cell Line ,Humans ,Amino Acid Sequence ,Binding site ,Enhancer ,Molecular Biology ,Glycoproteins ,Extracellular Matrix Proteins ,Binding Sites ,Enzyme Catalysis and Regulation ,Chemistry ,Circular Dichroism ,Cell Biology ,CUB domain ,Kinetics ,Procollagen peptidase ,Mutation ,Biophysics ,Electrophoresis, Polyacrylamide Gel ,Linker ,Procollagen ,Protein Binding - Abstract
Procollagen C-proteinase enhancers (PCPE-1 and -2) specifically activate bone morphogenetic protein-1 (BMP-1) and other members of the tolloid proteinase family during C-terminal processing of fibrillar collagen precursors. PCPEs consist of two CUB domains (CUB1 and CUB2) and one NTR domain separated by one short and one long linker. It was previously shown that PCPEs can strongly interact with procollagen molecules, but the exact mechanism by which they enhance BMP-1 activity remains largely unknown. Here, we used a series of deletion mutants of PCPE-1 and two chimeric constructs with repetitions of the same CUB domain to study the role of each domain and linker. Out of all the forms tested, only those containing both CUB1 and CUB2 were capable of enhancing BMP-1 activity and binding to a mini-procollagen substrate with nanomolar affinity. Both these properties were lost by individual CUB domains, which had dissociation constants at least three orders of magnitude higher. In addition, none of the constructs tested could inhibit PCPE activity, although CUB2CUB2NTR was found to modulate BMP-1 activity through direct complex formation with the enzyme, resulting in a decreased rate of substrate processing. Finally, increasing the length of the short linker between CUB1 and CUB2 was without detrimental effect on both activity and substrate binding. These data support the conclusion that CUB1 and CUB2 bind to the procollagen substrate in a cooperative manner, involving the short linker that provides a flexible tether linking the two binding regions.
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- 2009
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25. Extracellular and cell surface proteases in wound healing: new players are still emerging
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David J.S. Hulmes and Catherine Moali
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Proteases ,Cell signaling ,Angiogenesis ,Neovascularization, Physiologic ,Dermatology ,Biology ,Matrix metalloproteinase ,Extracellular matrix ,Fibrinolytic Agents ,Cysteine Proteases ,Extracellular ,medicine ,Humans ,Fibrinolysin ,Skin ,Inflammation ,Hemostasis ,Wound Healing ,Granulation tissue ,Matrix Metalloproteinases ,Extracellular Matrix ,Cell biology ,medicine.anatomical_structure ,Immunology ,Intercellular Signaling Peptides and Proteins ,Serine Proteases ,Extracellular Space ,Wound healing ,Peptide Hydrolases ,Signal Transduction - Abstract
Tissue remodelling results from the concerted action of numerous extracellular and cell surface proteases. These act to synchronize the synthesis and degradation of the extracellular matrix with the control of cytokine activity and cell signalling in order to create appropriate environments for cell proliferation, migration and differentiation. Wound healing is a complex example of tissue remodelling that includes several steps occurring either concomitantly or successively during the process of repair: haemostasis, inflammation, angiogenesis, re-epithelialisation, granulation tissue formation, wound contraction and matrix remodelling. The main extracellular and cell surface proteases involved in wound healing are serine proteases, especially plasmin, and metalloproteases of the metzincin family (MMPs, ADAM(TS)s, tolloids, meprins, pappalysins) with cysteine proteases playing less prominent roles. Several regulatory proteins and hundreds of substrates have been identified for these proteases, either in vitro or in vivo. The aim of this review is not to present an exhaustive list of proteases and related molecules but to give an overview of the proteolytic events that are potentially relevant during tissue repair. New developments aimed at approaching a more integrative view of all the molecular events involved in tissue remodelling are also discussed.
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- 2009
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26. Trimerization of collagen IX α-chains does not require the presence of the COL1 and NC1 domains
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William Beckett, Juha Jäälinoja, Leena Ala-Kokko, David J.S. Hulmes, and Joni Ylostalo
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Coiled coil ,Protein Folding ,Chemistry ,Stereochemistry ,Circular Dichroism ,Molecular Sequence Data ,Cell Biology ,Biochemistry ,Collagen Type IX ,Recombinant Proteins ,Protein Structure, Tertiary ,Folding (chemistry) ,Crystallography ,Amino Acid Sequence ,Molecular Biology ,Triple helix ,Cysteine - Abstract
Collagen IX is a heterotrimer of three α-chains, which consists of three COL domains (collagenous domains) (COL1–COL3) and four NC domains (non-collagenous domains) (NC1–NC4), numbered from the C-terminus. Although collagen IX chains have been shown to associate via their C-terminal NC1 domains and form a triple helix starting from the COL1 domain, it is not known whether chain association can occur at other sites and whether other collagenous and non-collagenous regions are involved. To address this question, we prepared five constructs, two long variants (beginning at the NC4 domain) and three short variants (beginning at the COL2 domain), all ending at the NC2 domain (or NC2 replaced by NC1), to study association and selection of collagen IX α-chains. Both long variants were able to associate with NC1 or NC2 at the C-terminus and form various disulfide-bonded trimers, but the specificity of chain selection was diminished compared with full-length chains. Trimers of the long variant ending at NC2 were shown to be triple helical by CD. Short variants were not able to assemble into disulfide-bonded trimers even in the presence of both conserved cysteine residues from the COL1–NC1 junction. Our results demonstrate that collagen IX α-chains can associate in the absence of COL1 and NC1 domains to form a triple helix, but the COL2–NC2 region alone is not sufficient for trimerization. The results suggest that folding of collagen IX is a co-operative process involving multiple COL and NC domains and that the COL1–NC1 region is important for chain specificity.
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- 2007
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27. Orthogonal scaffold of magnetically aligned collagen lamellae for corneal stroma reconstruction
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Florence Ruggiero, Nicolas Builles, Åke Oldberg, Jim Torbet, Odile Damour, Marilyne Malbouyres, Virginie Justin, Muriel Roulet, and David J.S. Hulmes
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Keratinocytes ,Scaffold ,Materials science ,Tissue Engineering ,Guided Tissue Regeneration ,Protein Conformation ,Corneal Stroma ,Biophysics ,Biocompatible Materials ,Bioengineering ,Nanotechnology ,Ophthalmologic Surgical Procedures ,Matrix (biology) ,Contact guidance ,Collagen fibril ,Biomaterials ,Normal cell ,Magnetics ,Stroma ,Mechanics of Materials ,Ceramics and Composites ,Collagen ,Type I collagen ,Cell Proliferation ,Biomedical engineering - Abstract
The creation of 3D scaffolds that mimic the structure of physiological tissue required for normal cell function is a major bioengineering challenge. For corneal stroma reconstruction this necessitates the creation of a stroma-like scaffold consisting of a stack of orthogonally disposed sheets of aligned collagen fibrils. This study demonstrates that such a scaffold can be built up using magnetic alignment. By allowing neutralized acid-soluble type I collagen to gel in a horizontal magnetic field (7 T) and by combining a series of gelation-rotation-gelation cycles, a scaffold of orthogonal lamellac composed of aligned collagen fibrils has been formed. Although initially dilute, the gels can be concentrated without noticeable loss in orientation. The gels are translucent but their transparency can be greatly improved by the addition of proteoglycans to the gel-forming solution. Keratocytes align by contact guidance along the direction of collagen fibrils and respect the orthogonal design of the collagen template as they penetrate into the bulk of the 3D matrix. The scaffold is a significant step towards the creation of a corneal substitute with properties resembling those of native corneal stroma. (c) 2007 Elsevier Ltd. All rights reserved.
- Published
- 2007
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28. Insights into How CUB Domains Can Exert Specific Functions while Sharing a Common Fold
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Guillaume Blanc, Catherine Moali, Denise Eichenberger, Sylvie Ricard-Blum, Christophe Moreau, David J.S. Hulmes, and Bernard Font
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Alanine ,chemistry.chemical_classification ,Proteases ,Mutant ,Sequence alignment ,Cell Biology ,Biology ,Biochemistry ,Amino acid ,chemistry ,Binding site ,Enhancer ,Glycoprotein ,Molecular Biology - Abstract
Procollagen C-proteinase enhancers (PCPE-1 and -2) are extracellular glycoproteins that can stimulate the C-terminal processing of fibrillar procollagens by tolloid proteinases such as bone morphogenetic protein-1. They consist of two CUB domains (CUB1 and -2) that alone account for PCPE-enhancing activity and one C-terminal NTR domain. CUB domains are found in several extracellular and plasma membrane-associated proteins, many of which are proteases. We have modeled the structure of the CUB1 domain of PCPE-1 based on known three-dimensional structures of CUB-containing proteins. Sequence alignment shows conserved amino acids, notably two acidic residues (Asp-68 and Asp-109) involved in a putative surface-located calcium binding site, as well as a conserved tyrosine residue (Tyr-67). In addition, three residues (Glu-26, Thr-89, and Phe-90) are found only in PCPE CUB1 domains, in putative surface-exposed loops. Among the conserved residues, it was found that mutations of Asp-68 and Asp-109 to alanine almost completely abolished PCPE-1 stimulating activity, whereas mutation of Tyr-67 led to a smaller reduction of activity. Among residues specific to PCPEs, mutation of Glu-26 and Thr-89 had little effect, whereas mutation of Phe-90 dramatically decreased the activity. Changes in activity were paralleled by changes in binding of different PCPE-1 mutants to a mini-procollagen III substrate, as shown by surface plasmon resonance. We conclude that PCPE-stimulating activity requires a calcium binding motif in the CUB1 domain that is highly conserved among CUB-containing proteins but also that PCPEs contain specific sites that could become targets for the development of novel anti-fibrotic therapies.
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- 2007
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29. Substrate-specific Modulation of a Multisubstrate Proteinase
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Bernard Font, Catherine Moali, Florence Ruggiero, Åke Oldberg, Vincent François, Patricia Rousselle, Leena Bruckner-Tuderman, Denise Eichenberger, and David J.S. Hulmes
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0303 health sciences ,biology ,Chemistry ,030302 biochemistry & molecular biology ,Signal transducing adaptor protein ,macromolecular substances ,Cell Biology ,Matrix metalloproteinase ,Matrix (biology) ,Biochemistry ,03 medical and health sciences ,Procollagen peptidase ,Laminin ,biology.protein ,Extracellular ,Chordin ,Cell adhesion ,Molecular Biology ,030304 developmental biology - Abstract
Members of the bone morphogenetic protein-1/tolloid (BMP-1/Tld) family of metalloproteinases, also known as procollagen C-proteinases (PCPs), control multiple biological events (including matrix assembly, cross-linking, cell adhesion/migration and pattern formation) through enzymatic processing of several extracellular substrates. PCP activities on fibrillar procollagens can be stimulated by another family of extracellular proteins, PCP enhancers (PCPE-1, PCPE-2), which lack intrinsic enzymatic activity. While PCPs have multiple substrates, the extent to which PCPEs is involved in the processing of proteins other than fibrillar procollagens is unknown. In the experiments reported here, PCPE-1 was found to have no effect on the in vitro BMP-1 processing of procollagen VII, the procollagen V N-propeptide, the laminin 5 γ2 chain, osteoglycin, prolysyl oxidase, or chordin. In contrast, PCPE-1 enhanced C-terminal processing of human fibrillar procollagen III but only when this substrate was in its native, disulfide-bonded conformation. Surprisingly, processing of procollagen III continued to be enhanced when essentially all the triple-helical region was removed. These and previous results (Ricard-Blum, S., Bernocco, S., Font, B., Moali, C., Eichenberger, D., Farjanel, J., Burchardt, E. R., van der Rest, M., Kessler, E., and Hulmes, D. J. S. (2002) J. Biol. Chem. 277, 33864-33869; Bernocco, S., Steiglitz, B. M., Svergun, D. I., Petoukhov, M. V., Ruggiero, F., Ricard-Blum, S., Ebel, C., Geourjon, C., Deleage, G., Font, B., Eichenberger, D., Greenspan, D. S., and Hulmes, D. J. S. (2003) J. Biol. Chem. 278, 7199-7205) indicate that the mechanism of PCPE-1 action involves recognition sites in both the C-propeptide domain and in the C-telopeptide region of the procollagen molecule. PCPEs therefore define a new class of extracellular adaptor proteins that stimulate proteinase activity in a substrate-specific manner, thereby providing a new target for the selective regulation of PCP activity on fibrillar procollagen substrates.
- Published
- 2005
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30. α-Helical Coiled-coil Oligomerization Domains Are Almost Ubiquitous in the Collagen Superfamily
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David J.S. Hulmes, Audrey McAlinden, Damien Ficheux, David A.D. Parry, Linda J. Sandell, and Thomasin A. Smith
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Models, Molecular ,Repetitive Sequences, Amino Acid ,Fibrillar Collagens ,Recombinant Fusion Proteins ,viruses ,Sequence alignment ,Biology ,Biochemistry ,Protein Structure, Secondary ,Protein structure ,Collagen VI ,von Willebrand Factor ,Humans ,Protein oligomerization ,Amino Acid Sequence ,Molecular Biology ,Peptide sequence ,Coiled coil ,Cell Biology ,Peptide Fragments ,Protein Structure, Tertiary ,Heptad repeat ,Biophysics ,Collagen ,Sequence Alignment ,Procollagen ,Triple helix - Abstract
Alpha-helical coiled-coils are widely occurring protein oligomerization motifs. Here we show that most members of the collagen superfamily contain short, repeating heptad sequences typical of coiled coils. Such sequences are found at the N-terminal ends of the C-propeptide domains in all fibrillar procollagens. When fused C-terminal to a reporter molecule containing a collagen-like sequence that does not spontaneously trimerize, the C-propeptide heptad repeats induced trimerization. C-terminal heptad repeats were also found in the oligomerization domains of the multiplexins (collagens XV and XVIII). N-terminal heptad repeats are known to drive trimerization in transmembrane collagens, whereas fibril-associated collagens with interrupted triple helices, as well as collagens VII, XIII, XXIII, and XXV, were found to contain heptad repeats between collagen domains. Finally, heptad repeats were found in the von Willebrand factor A domains known to be involved in trimerization of collagen VI, as well as in collagen VII. These observations suggest that coiled-coil oligomerization domains are widely used in the assembly of collagens and collagen-like proteins.
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- 2003
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31. Lysyl Oxidase-like Protein from Bovine Aorta
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Claudine Gleyzal, Pascal Sommer, Bernard Font, Jean Farjanel, Efrat Kessler, David J.S. Hulmes, Agnes Borel, and Denise Eichenberger
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chemistry.chemical_classification ,integumentary system ,biology ,Lysyl oxidase ,macromolecular substances ,Cell Biology ,Biochemistry ,eye diseases ,In vitro ,Bone morphogenetic protein 1 ,Amino acid ,Residue (chemistry) ,Enzyme ,chemistry ,cardiovascular system ,biology.protein ,Antibody ,Molecular Biology ,Elastin - Abstract
Recently several cDNAs have been described encoding lysyl oxidase-like proteins. Their deduced amino acid sequences are characterized by a strong similarity in the C-terminal region, corresponding to the lysyl oxidase family catalytic domain, and by marked differences in the N-terminal regions. Different biological functions have been described for lysyl oxidases in addition to their traditionally assumed cross-linking role. To answer the question of whether these different functions are carried out by different lysyl oxidases, purified and active forms of these enzymes are required. At present only the classical form of lysyl oxidase has been purified and characterized. The purpose of this study was to isolate and characterize the lysyl oxidase-like protein. In view of the strong sequence homology with the C-terminal domain of other lysyl oxidases, we chose to purify the protein from bovine aorta using antibodies specific to the N-terminal domain of the proenzyme. We have isolated a 56-kDa protein identified by amino acid sequencing as the bovine lysyl oxidase-like precursor, which is cleaved at the Arg-Arg-Arg sequence at positions 89-91 by a furin-like activity, as revealed after deblocking of the N-terminal residue. The immunopurified protein was largely inactive, but further processing in vitro by bone morphogenetic protein-1 led to an enzyme that was active on elastin and collagen substrates.
- Published
- 2001
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32. Control of Heterotypic Fibril Formation by Collagen V Is Determined by Chain Stoichiometry
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David J.S. Hulmes, Simonetta Bernocco, Robert Garrone, Hélène Chanut-Delalande, Agnès Fichard, and Florence Ruggiero
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Gene isoform ,Chemistry ,Thrombin ,macromolecular substances ,Cell Biology ,Fibril ,Immunohistochemistry ,Biochemistry ,law.invention ,Extracellular matrix ,Kinetics ,law ,Recombinant DNA ,Biophysics ,Animals ,Cattle ,Collagen ,Molecular Biology ,Linker ,Stoichiometry ,Triple helix ,Macromolecule - Abstract
Although the collagen V heterotrimer is known to be involved in the control of fibril assembly, the role of the homotrimer in fibrillar organization has not yet been examined. Here, the production of substantial amounts of recombinant collagen V homotrimer has allowed a detailed study of its role in homotypic and heterotypic fibril formation. After removal of terminal regions by pepsin digestion, both the collagen V heterotrimer and homotrimer formed thin homotypic fibrils, thus showing that diameter limitation is at least in part an intrinsic property of the collagen V triple helix. When mixed with collagen I, however, various complementary approaches indicated that the collagen V heterotrimer and homotrimer exerted different effects in heterotypic fibril formation. Unlike the heterotrimer, which was buried in the fibril interior, the homotrimer was localized as thin filamentous structures at the surface of wide collagen I fibrils and did not regulate fibril assembly. Its localization at the fibril surface suggests that the homotrimer can act as a molecular linker between collagen fibrils or macromolecules in the extracellular matrix or both. Thus, depending on their respective distribution in tissues, the different collagen V isoforms might fulfill specific biological functions.
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- 2001
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33. Folding and activity of recombinant human procollagen C-proteinase enhancer
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David J.S. Hulmes, Laura Moschcovich, Bernard Font, Denise Eichenberger, Efrat Kessler, Simonetta Bernocco, Nor Chejanovsky, and Hadassah Rivkin
- Subjects
Circular dichroism ,Biology ,Biochemistry ,Molecular biology ,Bone morphogenetic protein 1 ,law.invention ,Procollagen peptidase ,Protein structure ,Affinity chromatography ,law ,Recombinant DNA ,Protein folding ,Protein secondary structure - Abstract
Recombinant human procollagen C-proteinase enhancer (rPCPE) was expressed using a baculovirus system and purified to homogeneity using a three-step procedure including heparin affinity chromatography. Heparin binding was dependent on the C-terminal netrin-like domain. The recombinant protein was found to be active, increasing the activity of procollagen C-proteinase/bone morphogenetic protein-1 on type I procollagen in a manner comparable to the native protein. Enhancing activity was dependent on intact disulfide bonding within the protein. By circular dichroism, the observed secondary structure of rPCPE was consistent with the known three-dimensional structures of proteins containing homologous domains.
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- 2001
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34. Liquid crystalline ordering of procollagen as a determinant of three-dimensional extracellular matrix architecture 1 1Edited by M. F. Moody
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Marie-Madeleine Giraud-Guille, Raquel Martin, David J.S. Hulmes, Jean Farjanel, Efrat Kessler, Denise Eichenberger, and Alain Colige
- Subjects
Polarized light microscopy ,Chemistry ,Mesophase ,Fibril ,law.invention ,Extracellular matrix ,Procollagen peptidase ,Crystallography ,Structural Biology ,law ,Liquid crystal ,Molecule ,Crystallization ,Molecular Biology - Abstract
The precise molecular mechanisms that determine the three-dimensional architectures of tissues remain largely unknown. Within tissues rich in extracellular matrix, collagen fibrils are frequently arranged in a tissue-specific manner, as in certain liquid crystals. For example, the continuous twist between fibrils in compact bone osteons resembles a cholesteric mesophase, while in tendon, the regular, planar undulation, or “crimp”, is akin to a precholesteric mesophase. Such analogies suggest that liquid crystalline organisation plays a role in the determination of tissue form, but it is hard to see how insoluble fibrils could spontaneously and specifically rearrange in this way. Collagen molecules, in dilute acid solution, are known to form nematic, precholesteric and cholesteric phases, but the relevance to physiological assembly mechanisms is unclear. In vivo , fibrillar collagens are synthesised in soluble precursor form, procollagens, with terminal propeptide extensions. Here, we show, by polarized light microscopy of highly concentrated (5–30 mg/ml) viscous drops, that procollagen molecules in physiological buffer conditions can also develop long-range nematic and precholesteric liquid crystalline ordering extending over 100 μm 2 domains, while remaining in true solution. These observations suggest the novel concept that supra-fibrillar tissue architecture is determined by the ability of soluble precursor molecules to form liquid crystalline arrays, prior to fibril assembly.
- Published
- 2000
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35. Degenerative joint disease in poultry — differences in composition and morphology of articular cartilage are associated with strain susceptibility
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David J.S. Hulmes, J. M. Anderson-Mackenzie, and B.H. Thorp
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Cartilage, Articular ,musculoskeletal diseases ,Pathology ,medicine.medical_specialty ,animal structures ,Genotype ,animal diseases ,Tibiotarsus ,Fowl ,Tarsometatarsus ,Osteoarthritis ,Uronic acid ,Biology ,Tarsus, Animal ,Chondrocyte ,chemistry.chemical_compound ,Risk Factors ,medicine ,Animals ,Genetic Predisposition to Disease ,Poultry Diseases ,General Veterinary ,Cartilage ,Synovial Membrane ,Broiler ,food and beverages ,Humerus ,biology.organism_classification ,medicine.disease ,Uronic Acids ,medicine.anatomical_structure ,chemistry ,Sprains and Strains ,Female ,Chickens - Abstract
The morphology and basic biochemical composition of articular cartilage from two strains of fowl were examined. Broiler breeder fowl are considered susceptible to degenerative joint disease (DJD); histological examination of one-year-old broiler breeders showed in some samples, articular cartilage thinning, fibrillation and chondrocyte cluster formation, features considered typical of DJD. Examination of similar samples from laying strain fowl showed only minor age-related changes such as some slight cartilage thinning and very mild fibrillation. The articular cartilage from the broiler breeder birds was significantly more hydrated with a higher uronic acid content than that of the laying strain birds. In addition, unloaded articular surfaces such as the proximal humerus had significantly higher amounts of uronic acid than the loaded cartilage surfaces of the proximal tarsometatarsus and the distal tibiotarsus; this suggested that the joint loading may have a role in any biochemical differences found between joints and between strains of fowl. These findings concur with other reports in mammals that showed increased hydration and uronic acid in association with early DJD and in models of osteoarthritis (OA). Thus, despite some differences between avian and mammalian articular cartilage, studies on avian DJD may give insights into mammalian disease.
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- 1997
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36. Metalloproteases meprin α and meprin β are C- and N-procollagen proteinases important for collagen assembly and tensile strength
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Catherine Moali, Claudia Broder, Sandrine Vadon-Le Goff, Philipp Arnold, Judith S. Bond, Christopher M. Overall, David J.S. Hulmes, Christoph Becker-Pauly, Kerstin Bahr, Tomas Koudelka, Moritz A. Konerding, Andreas Tholey, and Stefan Müller
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Materials science ,Connective tissue ,CHO Cells ,Collagen Type I ,Mice ,Cricetulus ,Fibrosis ,Cricetinae ,Tensile Strength ,medicine ,Animals ,Humans ,Protein precursor ,Skin ,Mice, Knockout ,Metalloproteinase ,Multidisciplinary ,Proteolytic enzymes ,Metalloendopeptidases ,Procollagen N-Endopeptidase ,Biological Sciences ,medicine.disease ,Cell biology ,Procollagen peptidase ,Collagen, type I, alpha 1 ,medicine.anatomical_structure ,HEK293 Cells ,Biochemistry ,Proteolysis - Abstract
Type I fibrillar collagen is the most abundant protein in the human body, crucial for the formation and strength of bones, skin, and tendon. Proteolytic enzymes are essential for initiation of the assembly of collagen fibrils by cleaving off the propeptides. We report that Mep1a −/− and Mep1b −/− mice revealed lower amounts of mature collagen I compared with WT mice and exhibited significantly reduced collagen deposition in skin, along with markedly decreased tissue tensile strength. While exploring the mechanism of this phenotype, we found that cleavage of full-length human procollagen I heterotrimers by either meprin α or meprin β led to the generation of mature collagen molecules that spontaneously assembled into collagen fibrils. Thus, meprin α and meprin β are unique in their ability to process and release both C- and N-propeptides from type I procollagen in vitro and in vivo and contribute to the integrity of connective tissue in skin, with consequent implications for inherited connective tissue disorders.
- Published
- 2013
37. Cholinium-based supported ionic liquid membranes: a sustainable route for carbon dioxide separation
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Cristina Silva Pereira, Rui Ferreira, David J.S. Patinha, Luís Paulo N. Rebelo, Helga Garcia, Carmen S. R. Freire, Isabel M. Marrucho, and Liliana C. Tomé
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Carbon Sequestration ,Nitrogen ,General Chemical Engineering ,Inorganic chemistry ,Ionic Liquids ,GAS SEPARATIONS ,SOLUBILITY ,chemistry.chemical_compound ,DIFFUSIVITIES ,ANION ,Environmental Chemistry ,General Materials Science ,PERMEABILITY ,Gas separation ,Carboxylate ,BIOMATERIALS ,IMIDAZOLIUM ,Membranes, Artificial ,PERFORMANCE ,Permeation ,Carbon Dioxide ,Environmentally friendly ,Quaternary Ammonium Compounds ,General Energy ,Membrane ,chemistry ,Ionic liquid ,Carbon dioxide ,CO2 ,Methane ,CO2/N-2 SEPARATION - Abstract
Made available in DSpace on 2017-12-07T19:45:35Z (GMT). No. of bitstreams: 2 license.txt: 2154 bytes, checksum: 4b0f01eb19f34a0ae8b22225f6f5120c (MD5) Cholinium-based supported ionic liquid membranes A sustainable route for carbon dioxide separation_10.1002cssc.201300613.pdf: 494857 bytes, checksum: 554b1b09a61ceebeb2b6038e4f71d7b1 (MD5) Previous issue date: 2014
- Published
- 2013
38. Expression of active, human lysyl oxidase inEscherichia coli
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David J.S. Hulmes, M. Ouzzine, A. Boyd, and Deleage, Gilbert
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Signal peptide ,DNA, Complementary ,Molecular Sequence Data ,Biophysics ,Lysyl oxidase ,Biology ,medicine.disease_cause ,Biochemistry ,Protein-Lysine 6-Oxidase ,03 medical and health sciences ,Structural Biology ,Escherichia coli ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Genetics ,medicine ,Humans ,Amino Acid Sequence ,Cloning, Molecular ,Molecular Biology ,Peptide sequence ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Bacteria ,030302 biochemistry & molecular biology ,Cell Biology ,Periplasmic space ,Molecular biology ,Fusion protein ,Recombinant Proteins ,Enzyme ,chemistry ,Copper amine oxidase ,biology.protein ,Protein expression ,Electrophoresis, Polyacrylamide Gel ,Elastin - Abstract
Lysyl oxidase (LO) is a copper amine oxidase of the extracellular matrix which initiates covalent cross-linking in collagens and elastin. Human LO was expressed in Escherichia coli. At 37 degrees C, large amounts of protein were obtained, but in the form of insoluble aggregates. Lowering the growth temperature, and reducing the amount of inducer, resulted in the production of soluble LO, which was active on a degrees [3H]lysine-labeled elastin substrate. LO was also targeted to the periplasm as a fusion protein with the pelb signal peptide. The periplasmic enzyme was soluble, active and inhibited by beta-aminopropionitrile. Production of the carbonyl co-factor is therefore not a limitation in the expression of active LO in bacteria.Lysyl oxidase (LO) is a copper amine oxidase of the extracellular matrix which initiates covalent cross-linking in collagens and elastin. Human LO was expressed in Escherichia coli. At 37 degrees C, large amounts of protein were obtained, but in the form of insoluble aggregates. Lowering the growth temperature, and reducing the amount of inducer, resulted in the production of soluble LO, which was active on a degrees [3H]lysine-labeled elastin substrate. LO was also targeted to the periplasm as a fusion protein with the pelb signal peptide. The periplasmic enzyme was soluble, active and inhibited by beta-aminopropionitrile. Production of the carbonyl co-factor is therefore not a limitation in the expression of active LO in bacteria.
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- 1996
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39. Radial packing, order, and disorder in collagen fibrils
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Peter Fratzl, D J Prockop, Tim J Wess, David J.S. Hulmes, and Deleage, Gilbert
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Diffraction ,Materials science ,Quantitative Biology::Tissues and Organs ,Biophysics ,macromolecular substances ,02 engineering and technology ,Molecular physics ,law.invention ,Tendons ,03 medical and health sciences ,Crystallinity ,X-Ray Diffraction ,Liquid crystal ,law ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Perpendicular ,Animals ,030304 developmental biology ,0303 health sciences ,Fourier Analysis ,Intermolecular force ,021001 nanoscience & nanotechnology ,Rats ,Models, Structural ,Crystallography ,Connective Tissue ,X-ray crystallography ,Thermodynamics ,Grain boundary ,Collagen ,Electron microscope ,0210 nano-technology ,Research Article - Abstract
Collagen fibrils resemble smectic, liquid crystals in being highly ordered axially but relatively disordered laterally. In some connective tissues, x-ray diffraction reveals three-dimensional crystallinity in the molecular packing within fibrils, although the continued presence of diffuse scatter indicates significant underlying disorder. In addition, several observations from electron microscopy suggest that the molecular packing is organized concentrically about the fibril core. In the present work, theoretical equatorial x-ray diffraction patterns for a number of models for collagen molecular packing are calculated and compared with the experimental data from tendon fibrils. None of the models suggested previously can account for both the crystalline Bragg peaks and the underlying diffuse scatter. In addition, models in which any of the nearest-neighbor, intermolecular vectors are perpendicular to the radial direction are inconsistent with the observed radial orientation of the principal approximately 4 nm Bragg spacing. Both multiple-start spiral and concentric ring models are devised in which one of the nearest-neighbor vectors is along the radial direction. These models are consistent with the radial orientation of the approximately 4 nm spacing, and energy minimization results in radially oriented crystalline domains separated by disordered grain boundaries. Theoretical x-ray diffraction patterns show a combination of sharp Bragg peaks and underlying diffuse scatter. Close agreement with the observed equatorial diffraction pattern is obtained. The concentric ring model is consistent with the observation that the diameters of collagen fibrils are restricted to discrete values.Collagen fibrils resemble smectic, liquid crystals in being highly ordered axially but relatively disordered laterally. In some connective tissues, x-ray diffraction reveals three-dimensional crystallinity in the molecular packing within fibrils, although the continued presence of diffuse scatter indicates significant underlying disorder. In addition, several observations from electron microscopy suggest that the molecular packing is organized concentrically about the fibril core. In the present work, theoretical equatorial x-ray diffraction patterns for a number of models for collagen molecular packing are calculated and compared with the experimental data from tendon fibrils. None of the models suggested previously can account for both the crystalline Bragg peaks and the underlying diffuse scatter. In addition, models in which any of the nearest-neighbor, intermolecular vectors are perpendicular to the radial direction are inconsistent with the observed radial orientation of the principal approximately 4 nm Bragg spacing. Both multiple-start spiral and concentric ring models are devised in which one of the nearest-neighbor vectors is along the radial direction. These models are consistent with the radial orientation of the approximately 4 nm spacing, and energy minimization results in radially oriented crystalline domains separated by disordered grain boundaries. Theoretical x-ray diffraction patterns show a combination of sharp Bragg peaks and underlying diffuse scatter. Close agreement with the observed equatorial diffraction pattern is obtained. The concentric ring model is consistent with the observation that the diameters of collagen fibrils are restricted to discrete values.
- Published
- 1995
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40. The proteolytic processing site of the precursor of lysyl oxidase
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David J.S. Hulmes, Linda A. Fothergill-Gilmore, Andrew D. Cronshaw, and Deleage, Gilbert
- Subjects
Glycosylation ,Swine ,Sequence analysis ,Molecular Sequence Data ,Lysyl oxidase ,Cleavage (embryo) ,Biochemistry ,Protein-Lysine 6-Oxidase ,chemistry.chemical_compound ,Endopeptidases ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Animals ,Amino Acid Sequence ,Cyanogen Bromide ,Protein Precursors ,Binding site ,Protein precursor ,Molecular Biology ,Peptide sequence ,Chromatography, High Pressure Liquid ,chemistry.chemical_classification ,Aspartic Acid ,Binding Sites ,Metalloendopeptidases ,Cell Biology ,Peptide Fragments ,Amino acid ,Molecular Weight ,chemistry ,Sequence Analysis ,Research Article - Abstract
The precise cleavage site of the N-terminal propeptide region of the precursor of lysyl oxidase has not yet been established, due to N-terminal blocking of the mature protein. Using a combination of peptide fragmentation, amino acid sequencing, time-of-flight m.s. and partial chemical unblocking procedures, it is shown that the mature form of lysyl oxidase begins at residue Asp-169 of the precursor protein (numbered according to the human sequence). The cleavage site is 28 residues to the C-terminal side of the site previously suggested on the basis of apparant molecular mass by SDS/PAGE, with the consequence that the two putative, N-linked glycosylation sites and the position of the Arg/Gln sequence polymorphism are now all in the precursor region.The precise cleavage site of the N-terminal propeptide region of the precursor of lysyl oxidase has not yet been established, due to N-terminal blocking of the mature protein. Using a combination of peptide fragmentation, amino acid sequencing, time-of-flight m.s. and partial chemical unblocking procedures, it is shown that the mature form of lysyl oxidase begins at residue Asp-169 of the precursor protein (numbered according to the human sequence). The cleavage site is 28 residues to the C-terminal side of the site previously suggested on the basis of apparant molecular mass by SDS/PAGE, with the consequence that the two putative, N-linked glycosylation sites and the position of the Arg/Gln sequence polymorphism are now all in the precursor region.
- Published
- 1995
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41. Hepatocellular carcinoma lesion characterization: single-institution clinical performance review of multiphase gadolinium-enhanced MR imaging--comparison to prior same-center results after MR systems improvements
- Author
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Christina Lurie, Bobby Kalb, James R. Spivey, Hiroumi D. Kitajima, David J.S. Becker-Weidman, N. Volkan Adsay, Zhengjia Chen, S.I. Hanish, Stuart J. Knechtle, Puneet Sharma, Diego R. Martin, and Alton B. Farris
- Subjects
Male ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Gadolinium ,medicine.medical_treatment ,chemistry.chemical_element ,Contrast Media ,Liver transplantation ,Sensitivity and Specificity ,Lesion ,Meglumine ,Predictive Value of Tests ,Carcinoma ,Organometallic Compounds ,Medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Single institution ,neoplasms ,Retrospective Studies ,business.industry ,Liver Neoplasms ,Clinical performance ,Middle Aged ,medicine.disease ,Mr imaging ,Magnetic Resonance Imaging ,digestive system diseases ,Liver Transplantation ,chemistry ,Hepatocellular carcinoma ,Female ,Radiology ,medicine.symptom ,business - Abstract
To measure diagnostic performance in the detection of hepatocellular carcinoma (HCC) by using the most recent technology and multiphase gadolinium-enhanced magnetic resonance (MR) imaging and to compare with earlier results at the same institution.This retrospective study was institutional review board approved and HIPAA compliant. Informed consent was obtained. Between January 2008 and April 2010, 101 patients underwent liver transplantation and pretransplantation abdominal MR imaging within 90 days. Prospective image interpretations from the clinical record were reviewed for documentation of HCC, including size, number, and location. Liver explant histologic examination provided the reference standard for lesion analysis and was performed in axial gross slices in conjunction with the MR imaging report for direct comparison. Tumors were categorized according to size (≥ 2 cm or2 cm), and MR imaging detection sensitivity, specificity, predictive values, and accuracy were calculated according to category. The Fisher exact test was used to compare results from this study against prior reported results.Thirty-five (34.7%) of 101 patients had HCC at explant analysis. Patient-based analysis of all lesions showed a sensitivity and specificity of 97.1% (34 of 35) and 100% (66 of 66), respectively. For lesions 2 cm or larger, MR imaging had a sensitivity and specificity of 100% (23 of 23) and 100% (78 of 78), respectively. For lesions smaller than 2 cm, MR imaging had a sensitivity and specificity of 82.6% (19 of 23) and 100% (78 of 78), respectively. Lesion-based sensitivity for all tumors was 91.4% (53 of 58) in the current study, compared with 77.8% in 2007 (P = .07). For lesions smaller than 2 cm, the sensitivity was 87.5% (28 of 32) in the current study, compared with 55.6% previously (P = .02).MR imaging remains a highly accurate diagnostic method for the preoperative evaluation of HCC, and detection of small (2 cm) tumors has been significantly improved compared with that of earlier studies.
- Published
- 2011
42. Quantitative Studies of Human Lung Airspace Wall in Relation to Collagen and Elastin Content
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David J.S. Hulmes, David Lams, Andrew Miller, Malcolm R. Lang, Gerald W. Fiaux, and Deleage, Gilbert
- Subjects
Pathology ,medicine.medical_specialty ,Materials science ,Human lung ,Hydroxyproline ,chemistry.chemical_compound ,Rheumatology ,Reference Values ,Fibrosis ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,medicine ,Humans ,Isodesmosine ,Lung ,Aged ,Aged, 80 and over ,Alveolar Wall ,Analysis of Variance ,biology ,Smoking ,Middle Aged ,respiratory system ,medicine.disease ,Elastin ,respiratory tract diseases ,Pulmonary Alveoli ,medicine.anatomical_structure ,chemistry ,Normal lung ,biology.protein ,Autopsy ,Collagen - Abstract
Biochemical determinations of the collagen and elastin content in 50 mm3 samples of human lung are presented in relation to morphometric measurements of lung structure, as the amount of alveolar wall surface area per unit volume (AWUV), on adjacent slices. There were no differences in AWUV values, collagen content (determined as hydroxyproline) or elastin content (determined as isodesmosine) between upper and lower lobes within a single lung. In a study of 102 samples from 9 smokers lungs with no evidence of macro- or microscopic emphysema (as estimated by AWUV measurement), there was a negative correlation between AWUV and the amounts of collagen or elastin per unit volume of inflated lung. The correlation was stronger when collagen and elastin content were expressed per unit area of alveolar wall. The negative correlation is interpreted as representing either the anatomical variation within the complex hierarchy of normal lung structure or possibly low levels of fibrosis in response to cigarette smoking.Biochemical determinations of the collagen and elastin content in 50 mm3 samples of human lung are presented in relation to morphometric measurements of lung structure, as the amount of alveolar wall surface area per unit volume (AWUV), on adjacent slices. There were no differences in AWUV values, collagen content (determined as hydroxyproline) or elastin content (determined as isodesmosine) between upper and lower lobes within a single lung. In a study of 102 samples from 9 smokers lungs with no evidence of macro- or microscopic emphysema (as estimated by AWUV measurement), there was a negative correlation between AWUV and the amounts of collagen or elastin per unit volume of inflated lung. The correlation was stronger when collagen and elastin content were expressed per unit area of alveolar wall. The negative correlation is interpreted as representing either the anatomical variation within the complex hierarchy of normal lung structure or possibly low levels of fibrosis in response to cigarette smoking.
- Published
- 1993
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43. Agreement between affectively based observational and parent-report measures of temperament at infant age 6 months
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Lisa J. Bridges, Michael Morales, Maria Hurtado, Sherri A. Palmer, and David J.S. tsai
- Subjects
Laughter ,Distress ,Psychometrics ,media_common.quotation_subject ,Personality development ,Developmental and Educational Psychology ,Temperament ,Observational study ,Anger ,Psychology ,media_common ,Pleasure ,Developmental psychology - Abstract
This study associated two temperament measures: The Rothbart Infant Behavior Questionnaire (IBQ) and the Goldsmith and Rothbart Laboratory Temperament Assessment Battery. Seventy-one infants were observed. Mothers completed the IBQ. Observed anger related to reported distress to limitations, whereas pleasure expressions related to reported smiling and laughter.
- Published
- 1993
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44. Tyrosine-rich acidic matrix protein (TRAMP) accelerates collagen fibril formation in vitro
- Author
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David J.S. Hulmes, Jonathan R.E. Macbeath, David R. Shackleton, and Deleage, Gilbert
- Subjects
Gel electrophoresis ,Dermatopontin ,Lysyl oxidase ,Cell Biology ,Matrix (biology) ,urologic and male genital diseases ,Fibril ,Biochemistry ,Dermatan sulfate ,Extracellular matrix ,chemistry.chemical_compound ,chemistry ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Molecular Biology ,Tramp - Abstract
Tyrosine-rich acidic matrix protein (TRAMP) is a recently discovered protein that co-purifies with porcine skin lysyl oxidase and is equivalent to the M(r) 22,000 extracellular matrix protein from bovine skin that co-purifies with dermatan sulfate proteoglycans (Cronshaw, A. D., MacBeath, J. R. E., Shackleton, D. R., Collins, J. F., Fothergill-Gilmore, L. A., and Hulmes, D. J. S. (1993) Matrix 13, 255-266; Neame, P. J., Choi, H. U., and Rosenberg, L. C. (1989) J. Biol. Chem. 264, 5474-5479). The effect of TRAMP on collagen fibril formation was studied in vitro by reconstitution of fibrils from lathyritic rat skin collagen I. Fibril formation was initiated by the warm start procedure, in which acidic collagen solutions and double strength neutral buffer, both preincubated separately at 34 degrees C, were mixed. When monitored by turbidimetry, TRAMP was found to accelerate collagen fibril formation. Acceleration occurred at sub-stoichiometric molar ratios of TRAMP collagen, and the presence of TRAMP stabilized the fibrils against low temperature dissociation. It was confirmed by centrifugation that the amount of fibrillar collagen formed in the presence of TRAMP was greater than in its absence. By SDS-polyacrylamide gel electrophoresis and scanning densitometry, binding of TRAMP to collagen was detected that approached saturation with a molar ratio of TRAMP to collagen of approximately 1:2. Fibrils formed in the presence of TRAMP were normal when observed by electron microscopy, although fibril diameters were smaller than the controls. TRAMP was found to partially reverse the inhibitory effects of urea and increased ionic strength on the kinetics of fibril formation, although inhibition by glucose was unaffected. TRAMP also accelerated the assembly of pepsin-treated collagen, where the non-helical, telopeptide regions were partially removed. Acceleration of collagen fibril formation by TRAMP is discussed in the light of the known effects of other extracellular matrix components on this process.Tyrosine-rich acidic matrix protein (TRAMP) is a recently discovered protein that co-purifies with porcine skin lysyl oxidase and is equivalent to the M(r) 22,000 extracellular matrix protein from bovine skin that co-purifies with dermatan sulfate proteoglycans (Cronshaw, A. D., MacBeath, J. R. E., Shackleton, D. R., Collins, J. F., Fothergill-Gilmore, L. A., and Hulmes, D. J. S. (1993) Matrix 13, 255-266; Neame, P. J., Choi, H. U., and Rosenberg, L. C. (1989) J. Biol. Chem. 264, 5474-5479). The effect of TRAMP on collagen fibril formation was studied in vitro by reconstitution of fibrils from lathyritic rat skin collagen I. Fibril formation was initiated by the warm start procedure, in which acidic collagen solutions and double strength neutral buffer, both preincubated separately at 34 degrees C, were mixed. When monitored by turbidimetry, TRAMP was found to accelerate collagen fibril formation. Acceleration occurred at sub-stoichiometric molar ratios of TRAMP collagen, and the presence of TRAMP stabilized the fibrils against low temperature dissociation. It was confirmed by centrifugation that the amount of fibrillar collagen formed in the presence of TRAMP was greater than in its absence. By SDS-polyacrylamide gel electrophoresis and scanning densitometry, binding of TRAMP to collagen was detected that approached saturation with a molar ratio of TRAMP to collagen of approximately 1:2. Fibrils formed in the presence of TRAMP were normal when observed by electron microscopy, although fibril diameters were smaller than the controls. TRAMP was found to partially reverse the inhibitory effects of urea and increased ionic strength on the kinetics of fibril formation, although inhibition by glucose was unaffected. TRAMP also accelerated the assembly of pepsin-treated collagen, where the non-helical, telopeptide regions were partially removed. Acceleration of collagen fibril formation by TRAMP is discussed in the light of the known effects of other extracellular matrix components on this process.
- Published
- 1993
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45. TRAMP (Tyrosine Rich Acidic Matrix Protein), a Protein that Co-purifies with Lysyl Oxidase from Porcine Skin
- Author
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John F. Collins, Jonathan R.E. Macbeath, David J.S. Hulmes, Andrew D. Cronshaw, Linda A. Fothergill-Gilmore, and David R. Shackleton
- Subjects
integumentary system ,biology ,Dermatopontin ,Lysyl oxidase ,Fast protein liquid chromatography ,macromolecular substances ,Molecular biology ,Protein structure ,Rheumatology ,Proteoglycan ,Biochemistry ,biology.protein ,Tyrosine ,Elastin ,Tramp - Abstract
A protein ( M r 24 K) that co-purifies with porcine skin lysyl oxidase ( M r 34 K) has been isolated and characterised. Five variants of the 24 K protein were identified by Mono Q ion-exchange FPLC, as were four variants of lysyl oxidase. Amino acid analysis and partial sequencing revealed near identity of a 36-residue CNBr peptide from porcine skin lysyl oxidase to corresponding regions of the putative lysyl oxidase precursor derived from rat and human cDNA. The 24 K protein was found to be unrelated to lysyl oxidase, but comparison with a protein sequence database showed it to be the same as a recently described protein from bovine skin that is associated with dermatan sulphate proteoglycans. The 24 K protein is relatively rich in tyrosine, and isoelectric focussing shows it to be acidic, with pI's in the range 4.1 to 4.4. In view of these properties, we propose the name TRAMP (Tyrosine Rich Acidic Matrix Protein) to identify this protein. Though TRAMP appears not to be glycosylated, several experiments indicate the presence of sulphotyrosine residues. When assayed using an elastin substrate, the activity of lysyl oxidase is unaffected by TRAMP.
- Published
- 1993
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46. Processing of procollagen III by meprins: new players in extracellular matrix assembly?
- Author
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Daniel Kronenberg, Walter Stöcker, Erwin E. Sterchi, Catherine Moali, Heiko Traupe, Markus Böhm, Sandrine Vadon-Le Goff, Bernd Cem Bruns, David J.S. Hulmes, and Christoph Becker-Pauly
- Subjects
Keratinocytes ,macromolecular substances ,Dermatology ,Matrix metalloproteinase ,Cleavage (embryo) ,Biochemistry ,Bone Morphogenetic Protein 1 ,Substrate Specificity ,Extracellular matrix ,03 medical and health sciences ,Dermis ,medicine ,Humans ,Enhancer ,Molecular Biology ,Cells, Cultured ,030304 developmental biology ,0303 health sciences ,Extracellular Matrix Proteins ,integumentary system ,Chemistry ,Extracellular matrix assembly ,030302 biochemistry & molecular biology ,Metalloendopeptidases ,Cell Biology ,Fibroblasts ,Fibrosis ,Procollagen peptidase ,medicine.anatomical_structure ,Collagen Type III ,HEK293 Cells ,Keloid ,Astacin - Abstract
Meprins α and β, a subgroup of zinc metalloproteinases belonging to the astacin family, are known to cleave components of the extracellular matrix, either during physiological remodeling or in pathological situations. In this study we present a new role for meprins in matrix assembly, namely the proteolytic processing of procollagens. Both meprins α and β release the N- and C-propeptides from procollagen III, with such processing events being critical steps in collagen fibril formation. In addition, both meprins cleave procollagen III at exactly the same site as the procollagen C-proteinases, including bone morphogenetic protein-1 (BMP-1) and other members of the tolloid proteinase family. Indeed, cleavage of procollagen III by meprins is more efficient than by BMP-1. In addition, unlike BMP-1, whose activity is stimulated by procollagen C-proteinase enhancer proteins (PCPEs), the activity of meprins on procollagen III is diminished by PCPE-1. Finally, following our earlier observations of meprin expression by human epidermal keratinocytes, meprin α is also shown to be expressed by human dermal fibroblasts. In the dermis of fibrotic skin (keloids), expression of meprin α increases and meprin β begins to be detected. Our study suggests that meprins could be important players in several remodeling processes involving collagen fiber deposition.
- Published
- 2010
47. Collagen Diversity, Synthesis and Assembly
- Author
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David J.S. Hulmes
- Subjects
In vivo ,Chemistry ,Extracellular ,Lysyl oxidase ,SUPERFAMILY ,macromolecular substances ,Intracellular ,In vitro ,Triple helix ,Cell biology ,Supramolecular assembly - Abstract
The vertebrate collagen superfamily now includes over 50 collagens and collagen-like proteins. Here, their different structures are described, as well as their diverse forms of supramolecular assembly. Also presented here are the various steps in collagen biosynthesis, both intracellular and extracellular, and the functions of the collagen-specific post-translational modifications. Assembly of collagen fibrils, both in vitro and in vivo, is reviewed, including the mechanisms that control this process and the interactions involved. Finally, recent developments in the supramolecular assembly of collagen-like peptides are discussed.
- Published
- 2008
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48. Procollagen type I C-proteinase enhancer is a naturally occurring connective tissue glycoprotein
- Author
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Efrat Kessler, David J.S. Hulmes, A. Paul Mould, and Deleage, Gilbert
- Subjects
Immunoblotting ,Biophysics ,Connective tissue ,Biology ,Biochemistry ,Antibodies ,Bone morphogenetic protein 1 ,Bone Morphogenetic Protein 1 ,Tendons ,Mice ,In vivo ,Endopeptidases ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,medicine ,Animals ,Trypsin ,Enhancer ,Molecular Biology ,Cells, Cultured ,Glycoproteins ,chemistry.chemical_classification ,Metalloendopeptidases ,Skeletal muscle ,Procollagen N-Endopeptidase ,Cell Biology ,Fibroblasts ,musculoskeletal system ,Molecular biology ,Rats ,Enzyme Activation ,Molecular Weight ,Procollagen peptidase ,medicine.anatomical_structure ,chemistry ,Connective Tissue ,Organ Specificity ,Bone Morphogenetic Proteins ,Electrophoresis, Polyacrylamide Gel ,Glycoprotein - Abstract
Using antibodies to the procollagen C-proteinase enhancer of mouse fibroblast culture medium, we have screened by immunoblotting extracts of several post natal mouse and rat tissues for the presence of the enhancer antigen. All rodent connective tissues were relatively rich in enhancer; lower amounts were found in skeletal muscle and heart and essentially no enhancer was detected in kidney, liver or brain. The amounts of enhancer in mouse tendon and calvaria extracts were age related, with highest amounts in 11 and 19 d tendons and in 1 d calvaria-the times of rapid growth of these organs. The results suggest that procollagen C-proteinase enhancer is a specific connective tissue glycoprotein that is likely to regulate procollagen processing in vivo.Using antibodies to the procollagen C-proteinase enhancer of mouse fibroblast culture medium, we have screened by immunoblotting extracts of several post natal mouse and rat tissues for the presence of the enhancer antigen. All rodent connective tissues were relatively rich in enhancer; lower amounts were found in skeletal muscle and heart and essentially no enhancer was detected in kidney, liver or brain. The amounts of enhancer in mouse tendon and calvaria extracts were age related, with highest amounts in 11 and 19 d tendons and in 1 d calvaria-the times of rapid growth of these organs. The results suggest that procollagen C-proteinase enhancer is a specific connective tissue glycoprotein that is likely to regulate procollagen processing in vivo.
- Published
- 1990
- Full Text
- View/download PDF
49. An ultrafiltration assay for lysyl oxidase
- Author
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David J.S. Hulmes, David R. Shackleton, and Deleage, Gilbert
- Subjects
Swine ,Lysine ,Biophysics ,Ultrafiltration ,Lysyl oxidase ,Chick Embryo ,Tritium ,Biochemistry ,Protein-Lysine 6-Oxidase ,chemistry.chemical_compound ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Animals ,Urea ,Molecular Biology ,chemistry.chemical_classification ,Chromatography ,Dose-Response Relationship, Drug ,biology ,Substrate (chemistry) ,Cell Biology ,Enzyme assay ,Elastin ,Ultrafiltration (renal) ,Enzyme ,chemistry ,Enzyme inhibitor ,Aminopropionitrile ,biology.protein ,Amino Acid Oxidoreductases ,Chickens - Abstract
A modification of the original microdistillation assay for lysyl oxidase is described in which Amicon C-10 microconcentrators are used to separate, by ultrafiltration, the 3H-labeled products released from a [4,5-3H]-lysine-labeled elastin substrate. Enzyme activity is determined by scintillation counting of the ultrafiltrate, after subtraction of radioactivity released in the presence of beta-aminopropionitrile, a specific inhibitor of the enzyme. Conditions are described which optimize both the sensitivity and the efficient use of substrate. The assay shows linear inhibition of activity in up to 1 M urea; hence, as the enzyme is normally diluted in the assay, samples in 6 M urea can be assayed directly, without prior dialysis, and corrected for partial inhibition. Comparable results are obtained when enzyme activity is assayed by ultrafiltration or microdistillation. The assay is simple and convenient and, by using disposable containers throughout, it eliminates the need for time-consuming decontamination of radioactive glassware.A modification of the original microdistillation assay for lysyl oxidase is described in which Amicon C-10 microconcentrators are used to separate, by ultrafiltration, the 3H-labeled products released from a [4,5-3H]-lysine-labeled elastin substrate. Enzyme activity is determined by scintillation counting of the ultrafiltrate, after subtraction of radioactivity released in the presence of beta-aminopropionitrile, a specific inhibitor of the enzyme. Conditions are described which optimize both the sensitivity and the efficient use of substrate. The assay shows linear inhibition of activity in up to 1 M urea; hence, as the enzyme is normally diluted in the assay, samples in 6 M urea can be assayed directly, without prior dialysis, and corrected for partial inhibition. Comparable results are obtained when enzyme activity is assayed by ultrafiltration or microdistillation. The assay is simple and convenient and, by using disposable containers throughout, it eliminates the need for time-consuming decontamination of radioactive glassware.
- Published
- 1990
- Full Text
- View/download PDF
50. A Kinetic Analysis of Type I Procollagen Processing in Developing Chick Embryo Cornea
- Author
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Sally J. Mellor, David J.S. Hulmes, and Gordon L. Atkins
- Subjects
medicine.anatomical_structure ,History and Philosophy of Science ,Chemistry ,Type I Procollagen ,General Neuroscience ,Cornea ,Kinetic analysis ,medicine ,Embryo ,Anatomy ,General Biochemistry, Genetics and Molecular Biology ,Cell biology - Published
- 1990
- Full Text
- View/download PDF
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