1. Rare Copy Number Variants (CNVs) and Breast Cancer Risk
- Author
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Vessela N. Kristensen, Abctb Investigators, Elinor J. Sawyer, Jose Esteban Castelao, Christine L. Clarke, Argyrios Ziogas, Natalia Bogdanova, Pascal Guénel, Lin Fritschi, Marina Bermisheva, Alicja Wolk, Anthony J. Swerdlow, Graham G. Giles, Antoinette Hollestelle, Camilla Wendt, Stig E. Bojesen, Reiner Hoppe, Laure Dossus, Marike Gabrielson, Doug Easton, Dimitrios Mavroudis, Rulla M. Tamimi, Manuela Gago-Dominguez, Roger L. Milne, Kristan J. Aronson, Kyriaki Michailidou, Logan C. Walker, Siranoush Manoukian, Taru A. Muranen, Melissa A. Troester, Celine M. Vachon, Javier Benítez, Alicja Lukomska, Martha S. Linet, Heli Nevanlinna, Marjanka K. Schmidt, Thilo Dörk, Kubelka-Sabit K, Rita K. Schmutzler, Antonenkova Nn, Pharoah Pd, Anna González-Neira, H Brenner, Dijana Plaseska-Karanfilska, Fergus J. Couch, Ian Tomlinson, Thérèse Truong, Sabine Behrens, A. H. Eliassen, Peter A. Fasching, Cox A, P. Kraft, Wei Zheng, Rudolph Kaaks, Tyrer Jp, Renske Keeman, Rachel A. Murphy, Georgia Chenevix-Trench, Dale P. Sandler, Olivia Fletcher, Leila Dorling, Sara Margolin, Thomas U. Ahearn, Agnes Jager, Christopher A. Haiman, Lauren R. Teras, Tjoung-Won Park-Simon, James V. Lacey, Per Hall, Matthias W. Beckmann, Jacques Simard, Michael Jones, Collee Jm, D G Evans, Shibli R, Investigators k, Katri Pylkäs, Xiaohong R. Yang, Esther M. John, Eric Hahnen, D Lambrechts, Peter Devilee, Kamila Czene, Jonine D. Figueroa, Alison M. Dunning, Hoda Anton-Culver, Stella Koutros, Melissa C. Southey, Kosma, Joe Dennis, Yon-Dschun Ko, Mary Beth Terry, Jenny Chang-Claude, Anthony Howell, Beane Freeman Le, Charles M. Perou, Qinghua Wang, Henrik Flyger, Nichola Johnson, John L. Hopper, Paolo Peterlongo, Simon S. Cross, Jack A. Taylor, Audrey Y. Jung, Robert Winqvist, Håkan Olsson, Arndt, Irene L. Andrulis, Nicole L. Larson, Penny Soucy, Anna Jakubowska, Cari M. Kitahara, Janet E. Olson, Emmanouil Saloustros, Elza Khusnutdinova, Manjeet K. Bolla, M Garcia-Closas, Ann Smeets, Mikael Eriksson, Allison W. Kurian, Gadi Rennert, and Arto Mannermaa
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Genetics ,0303 health sciences ,Cancer ,Disease ,Biology ,medicine.disease ,3. Good health ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,030220 oncology & carcinogenesis ,Gene duplication ,medicine ,Human genome ,Copy-number variation ,Gene ,CHEK2 ,030304 developmental biology - Abstract
BackgroundCopy number variants (CNVs) are pervasive in the human genome but potential disease associations with rare CNVs have not been comprehensively assessed in large datasets. We analysed rare CNVs in genes and non-coding regions for 86,788 breast cancer cases and 76,122 controls of European ancestry with genome-wide array data.ResultsGene burden tests detected the strongest association for deletions in BRCA1 (P= 3.7E-18). Nine other genes were associated with a p-value < 0.01 including known susceptibility genes CHEK2 (P= 0.0008), ATM (P= 0.002) and BRCA2 (P= 0.008). Outside the known genes we detected associations with p-values < 0.001 for either overall or subtype-specific breast cancer at nine deletion regions and four duplication regions. Three of the deletion regions were in established common susceptibility loci.ConclusionsThis is the first genome-wide analysis of rare CNVs in a large breast cancer case-control dataset. We detected associations with exonic deletions in established breast cancer susceptibility genes. We also detected suggestive associations with non-coding CNVs in known and novel loci with large effects sizes. Larger sample sizes will be required to reach robust levels of statistical significance.
- Published
- 2021
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