219 results on '"Charles A. Pelizzari"'
Search Results
2. Small Animal IMRT Using 3D-Printed Compensators
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Rodney D. Wiersma, Charles A. Pelizzari, E Pearson, Inna Gertsenshteyn, Xinmin Liu, Ralph R. Weichselbaum, Bulent Aydogan, Gage Redler, Howard J. Halpern, and Boris Epel
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Cancer Research ,Accuracy and precision ,Fibrosarcoma ,Polyesters ,medicine.medical_treatment ,Proof of Concept Study ,Article ,Imaging phantom ,030218 nuclear medicine & medical imaging ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Animals ,Medicine ,Radiology, Nuclear Medicine and imaging ,Image resolution ,Radiation ,Phantoms, Imaging ,business.industry ,Radiotherapy Planning, Computer-Assisted ,X-Ray Film ,Attenuation ,Electron Spin Resonance Spectroscopy ,Isocenter ,Tumor Oxygenation ,Oxygen ,Radiation therapy ,Oncology ,030220 oncology & carcinogenesis ,Printing, Three-Dimensional ,Tumor Hypoxia ,Radiotherapy, Intensity-Modulated ,business ,Organ Sparing Treatments ,Intensity modulation ,Copper ,Biomedical engineering - Abstract
PURPOSE: Preclinical radiation replicating clinical intensity modulated radiation therapy (IMRT) techniques can provide data translatable to clinical practice. For this work, treatment plans were created for oxygen-guided dose-painting in small animals using inverse-planned IMRT. Spatially varying beam intensities were achieved using 3-dimensional (3D)-printed compensators. METHODS AND MATERIALS: Optimized beam fluence from arbitrary gantry angles was determined using a verified model of the XRAD225Cx treatment beam. Compensators were 3D-printed with varied thickness to provide desired attenuation using copper/polylactic-acid. Spatial resolution capabilities were investigated using printed test-patterns. Following American Association of Physicists in Medicine TG119, a 5-beam IMRT plan was created for a miniaturized (~1/8th scale) C-shape target. Electron paramagnetic resonance imaging of murine tumor oxygenation guided simultaneous integrated boost (SIB) plans conformally treating tumor to a base dose (Rx(1)) with boost (Rx(2)) based on tumor oxygenation. The 3D-printed compensator intensity modulation accuracy and precision was evaluated by individually delivering each field to a phantom containing radiochromic film and subsequent per-field gamma analysis. The methodology was validated end-to-end with composite delivery (incorporating 3D-printed tungsten/polylactic-acid beam trimmers to reduce out-of-field leakage) of the oxygen-guided SIB plan to a phantom containing film and subsequent gamma analysis. RESULTS: Resolution test-patterns demonstrate practical printer resolution of ~0.7 mm, corresponding to 1.0 mm bixels at the isocenter. The miniaturized C-shape plan provides planning target volume coverage (V(95%) = 95%) with organ sparing (organs at risk D(max) < 50%). The SIB plan to hypoxic tumor demonstrates the utility of this approach (hypoxic tumor V(95%,Rx2) = 91.6%, normoxic tumor V(95%,Rx1) = 95.7%, normal tissue V(100%,Rx1) = 7.1%). The more challenging SIB plan to boost the normoxic tumor rim achieved normoxic tumor V(95%,Rx2) = 90.9%, hypoxic tumor V(95%,Rx1) = 62.7%, and normal tissue V(100%,Rx2) = 5.3%. Average per-field gamma passing rates using 3%/1.0 mm, 3%/0.7 mm, and 3%/0.5 mm criteria were 98.8% ± 2.8%, 96.6% ± 4.1%, and 90.6% ± 5.9%, respectively. Composite delivery of the hypoxia boost plan and gamma analysis (3%/1 mm) gave passing results of 95.3% and 98.1% for the 2 measured orthogonal dose planes. CONCLUSIONS: This simple and cost-effective approach using 3D-printed compensators for small-animal IMRT provides a methodology enabling preclinical studies that can be readily translated into the clinic. The presented oxygen-guided dose-painting demonstrates that this methodology will facilitate studies driving much needed biologic personalization of radiation therapy for improvements in patient outcomes.
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- 2021
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3. Spin Lattice Relaxation EPR pO2 Images May Direct the Location of Radiation Tumor Boosts to Enhance Tumor Cure
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Victor M. Tormyshev, Howard J. Halpern, Matthew C. Maggio, Boris Epel, Eugene D. Barth, Charles A. Pelizzari, and Martyna Krzykawska-Serda
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image-guided radiation therapy ,medicine.medical_treatment ,Biophysics ,Radiation ,01 natural sciences ,Biochemistry ,03 medical and health sciences ,0302 clinical medicine ,Nuclear magnetic resonance ,medicine ,Fibrosarcoma ,Image-guided radiation therapy ,medicine.diagnostic_test ,010405 organic chemistry ,Chemistry ,electron paramagnetic resonance imaging ,Cancer ,Magnetic resonance imaging ,Cell Biology ,General Medicine ,Oxygenation ,Tumor Oxygenation ,medicine.disease ,0104 chemical sciences ,Radiation therapy ,030220 oncology & carcinogenesis ,radiation treatment ,oxygen imaging ,spin lattice relaxation imaging - Abstract
Radiation treatment success and high tumor oxygenation and success have been known to be highly correlated. This suggests that radiation therapy guided by images of tumor regions with low oxygenation, oxygen-guided radiation therapy (OGRT) may be a promising enhancement of cancer radiation treatment. Before applying the technique to human subjects, OGRT needs to be tested in animals, most easily in rodents. Electron paramagnetic resonance imaging provides quantitative maps of tissue and tumor oxygen in rodents with 1 mm spatial resolution and 1 torr pO2 resolution at low oxygen levels. The difficulty of using mouse models is their small size and that of their tumors. To overcome this we used XRAD225Cx micro-CT/ therapy system and 3D printed conformal blocks. Radiation is delivered first to a uniform 15% tumor control dose for the whole tumor and then a boost dose to either hypoxic tumor regions or equal volumes of well oxygenated tumor. Delivery of the booster dose used a multiple beam angles to deliver radiation beams whose shape conforms to that of all hypoxic regions or fully avoids those regions. To treat/avoid all hypoxic regions we used individual radiation blocks 3D-printed from acrylonitrile butadiene styrene polymer infused with tungsten particles fabricated immediately after imaging to determine regions with pO2 less than 10 torr. Preliminary results demonstrate the efficacy of the radiation treatment with hypoxic boosts with syngeneic FSa fibrosarcoma tumors in the legs of C3H mice.
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- 2017
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4. Sensitivity evaluation and selective plane imaging geometry for x-ray-induced luminescence imaging
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Bryan Quigley, Chester S. Reft, Rodney D. Wiersma, Patrick J. La Riviere, Chin-Tu Chen, Leu-Wei Lo, Charles A. Pelizzari, Corey Smith, Shih-Hsun Cheng, and Jeffrey S. Souris
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Luminescence ,Materials science ,Photon ,Geometry ,02 engineering and technology ,Signal-To-Noise Ratio ,01 natural sciences ,Article ,Imaging phantom ,010309 optics ,Optics ,0103 physical sciences ,Phantoms, Imaging ,Scattering ,business.industry ,X-Rays ,Optical Imaging ,X-ray ,General Medicine ,021001 nanoscience & nanotechnology ,Diffuse optical imaging ,Calibration ,Radiance ,Nanoparticles ,Deconvolution ,0210 nano-technology ,business - Abstract
Purpose X-ray induced luminescence (XIL) is a hybrid X-ray/optical imaging modality that employs nanophosphors that luminescence in response to X-ray irradiation. X-ray-activated phosphorescent nanoparticles have potential applications in radiation therapy as theranostics, nanodosimeters, or radiosensitizers. Extracting clinically relevant information from the luminescent signal requires the development of a robust imaging model that can determine nanophosphor distributions at depth in an optically scattering environment from surface radiance measurements. The applications of XIL in radiotherapy will be limited by the dose-dependent sensitivity at depth in tissue. We propose a novel geometry called selective plane XIL (SPXIL), and apply it to experimental measurements in optical gel phantoms and sensitivity simulations. Methods An imaging model is presented based on the selective plane geometry which can determine the detected diffuse optical signal for a given X-ray dose and nanophosphor distribution at depth in a semi-infinite, optically homogenous material. The surface radiance in the model is calculated using an analytical solution to the extrapolated boundary condition. Y2O3:Eu3+ nanoparticles are synthesized and inserted into various optical phantom in order to measure the luminescent output per unit dose for a given concentration of nanophosphors and calibrate an imaging model for XIL sensitivity simulations. SPXIL imaging with a dual-source optical gel phantom is performed, and an iterative Richardson-Lucy deconvolution using a shifted Poisson noise model is applied to the measurements in order to reconstruct the nanophosphor distribution. Results Nanophosphor characterizations showed a peak emission at 611 nm, a linear luminescent response to tube current and nanoparticle concentration, and a quadratic luminescent response to tube voltage. The luminescent efficiency calculation accomplished with calibrated bioluminescence mouse phantoms determines 1.06 photons were emitted per keV of X-ray radiation absorbed per g/mL of nanophosphor concentration. Sensitivity simulations determined XIL could detect a concentration of 1 mg/mL of nanophosphors with a dose of 1 cGy at a depth ranging from 2 to 4 cm, depending on the optical parameters of the homogeneous diffuse optical environment. The deconvolution applied to the SPXIL measurements could resolve two sources 1 cm apart up to a depth of 1.75 cm in the diffuse phantom. Conclusions We present a novel imaging geometry for XIL in a homogenous, diffuse optical environment. Basic characterization of Y2O3:Eu3+ nanophosphors are presented along with XIL/SPXIL measurements in optical gel phantoms. The diffuse optical imaging model is validated using these measurements and then calibrated in order to execute initial sensitivity simulations for the dose-depth limitations of XIL imaging. The SPXIL imaging model is used to perform a deconvolution on a dual-source phantom, which successfully reconstructs the nanophosphor distributions. This article is protected by copyright. All rights reserved.
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- 2017
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5. Use of proximal operator graph solver for radiation therapy inverse treatment planning
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Xinmin Liu, Rodney D. Wiersma, Charles A. Pelizzari, Z Grelewicz, and AH Belcher
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Mathematical optimization ,Optimization problem ,Radiotherapy Planning, Computer-Assisted ,Constrained optimization ,Radiotherapy Dosage ,General Medicine ,Solver ,Total variation denoising ,Article ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Convex optimization ,Graph (abstract data type) ,Quadratic programming ,Algorithms ,Computer memory ,Mathematics - Abstract
PURPOSE Most radiation therapy optimization problems can be formulated as an unconstrained problem and solved efficiently by quasi-Newton methods such as the Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS) algorithm. However, several next generation planning techniques such as total variation regularization- based optimization and MV+kV optimization, involve constrained or mixed-norm optimization, and cannot be solved by quasi-Newton methods. Using standard optimization algorithms on such problems often leads to prohibitively long optimization times and large memory requirements. This work investigates the use of a recently developed proximal operator graph solver (POGS) in solving such radiation therapy optimization problems. METHODS Radiation therapy inverse treatment planning was formulated as a graph form problem, and the proximal operators of POGS for quadratic optimization were derived. POGS was exploited for the first time to impose hard dose constraints along with soft constraints in the objective function. The solver was applied to several clinical treatment sites (TG119, liver, prostate, and head&neck), and the results were compared to the solutions obtained by other commercial and non-commercial optimizers. RESULTS For inverse planning optimization with nonnegativity box constraints on beamlet intensity, the speed of POGS can compete with that of LBFGSB in some situations. For constrained and mixed-norm optimization, POGS is about one or two orders of magnitude faster than the other solvers while requiring less computer memory. CONCLUSIONS POGS was used for solving inverse treatment planning problems involving constrained or mixed-norm formulation on several example sites. This approach was found to improve upon standard solvers in terms of computation speed and memory usage, and is capable of solving traditionally difficult problems, such as total variation regularization-based optimization and combined MV+kV optimization.
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- 2017
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6. Hematologic Nadirs During Chemoradiation for Anal Cancer: Temporal Characterization and Dosimetric Predictors
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Stanley L. Liauw, A.Y. Lee, Malgorzata Kopec, Jose G. Bazan, Charles A. Pelizzari, Daniel T. Chang, Sonya Aggarwal, and Daniel W. Golden
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Male ,Cancer Research ,medicine.medical_specialty ,Neutropenia ,Time Factors ,Mitomycin ,medicine.medical_treatment ,Urology ,Antineoplastic Agents ,Drug Administration Schedule ,030218 nuclear medicine & medical imaging ,Ilium ,03 medical and health sciences ,0302 clinical medicine ,Bone Marrow ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Carcinoma ,Humans ,Anal cancer ,Radiology, Nuclear Medicine and imaging ,Pelvic Bones ,Capecitabine ,Retrospective Studies ,Cytopenia ,Radiation ,business.industry ,Radiotherapy Dosage ,Chemoradiotherapy ,Leukopenia ,Middle Aged ,Anus Neoplasms ,medicine.disease ,Thrombocytopenia ,Surgery ,Radiation therapy ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Toxicity ,Carcinoma, Squamous Cell ,Female ,Fluorouracil ,Radiotherapy, Intensity-Modulated ,Bone marrow ,Radiotherapy, Conformal ,business ,Body mass index - Abstract
Purpose Pelvic bone marrow (BM) constraints may offer a means to reduce the toxicity commonly associated with chemoradiation for anal cancer. We conducted a bi-institutional analysis of dose-volume metrics in a time-sensitive fashion to devise practical metrics to minimize hematologic toxicity. Methods and Materials Fifty-six anal cancer patients from 2 institutions received definitive radiation therapy (median primary dose of 54 Gy) using intensity modulated radiation therapy (IMRT, n=49) or 3-dimensional (3D) conformal therapy (n=7) with concurrent 5-fluorouracil (5-FU) and mitomycin C. Weekly blood counts were retrospectively plotted to characterize the time course of cytopenias. Dose-volume parameters were correlated with blood counts at a standardized time point to identify predictors of initial blood count nadirs. Results Leukocytes, neutrophils, and platelets reached a nadir at week 3 of treatment. Smaller volumes of the pelvic BM correlated most strongly with lower week 3 blood counts, more so than age, sex, body mass index (BMI), or dose metrics. Patients who had ≥750 cc of pelvic BM spared from doses of ≥30 Gy had 0% grade 3+ leukopenia or neutropenia at week 3. Higher V40 Gy to the lower pelvic BM (LP V40) also correlated with cytopenia. Patients with an LP V40 >23% had higher rates of grade 3+ leukopenia (29% vs 4%, P =.02), grade 3+ neutropenia (33% vs 8%, P =.04), and grade 2+ thrombocytopenia (32% vs 7%, P =.04) at week 3. On multivariate analysis, pelvic BM volume and LP V40 remained associated with leukocyte count, and all marrow subsite volumes remained associated with neutrophil counts at week 3 ( P Conclusions Larger pelvic BM volumes correlate with less severe leukocyte and neutrophil nadirs, suggesting that larger total "marrow reserve" can mitigate cytopenias. Sparing a critical marrow reserve and limiting the V40 Gy to the lower pelvis may reduce the risk of hematologic toxicity.
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- 2017
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7. Bladder dose-volume parameters are associated with urinary incontinence after postoperative intensity modulated radiation therapy for prostate cancer
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Charles A. Pelizzari, Chuanhong Liao, J.M. Melotek, Stanley L. Liauw, Scott E. Eggener, Greg Hubert, and Christina H. Son
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Male ,medicine.medical_specialty ,medicine.medical_treatment ,Urinary Bladder ,030232 urology & nephrology ,Urology ,Urinary incontinence ,03 medical and health sciences ,Prostate cancer ,0302 clinical medicine ,Surveys and Questionnaires ,medicine ,Clinical endpoint ,Humans ,Radiology, Nuclear Medicine and imaging ,Postoperative Period ,Prospective Studies ,Prospective cohort study ,Univariate analysis ,Urinary bladder ,Urinary continence ,business.industry ,Prostatectomy ,Prostatic Neoplasms ,Middle Aged ,medicine.disease ,Urinary Incontinence ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Radiotherapy, Intensity-Modulated ,medicine.symptom ,business - Abstract
Urinary incontinence is a potential side effect of prostatectomy and intensity modulated radiation therapy (IMRT) for prostate cancer. There are limited data on dosimetric parameters that may predict for poor continence recovery in men who receive postoperative IMRT.Eighty-seven men with nonmetastatic prostate cancer who underwent prostatectomy followed by adjuvant (13%) or salvage (87%) IMRT were identified. The Expanded Prostate Cancer Index composite questionnaire was prospectively collected at baseline, 6 weeks, and 6, 12, 18, 24, 36, and 48 months post-IMRT. Relevant critical structures were contoured and dose-volume metrics collected. The primary endpoint was urinary continence global score. Longitudinal analysis using a generalized estimating equation model was performed.There was no statistically significant change in Expanded Prostate Cancer Index composite urinary continence global scores over time as compared with baseline (all P.05). In univariate analysis, bladder volume receiving 70 Gy (V70 Gy) and penile bulb V70 Gy were associated with urinary continence (odds ratio, 0.82; P.05). In a multivariable model that included body mass index, distance between vesicourethral junction and genitourinary diaphragm, time from surgery, use of antihypertensive medications, age, diabetes, and bladder V70 Gy, only bladder V70 Gy (odds ratio, 0.82; P = .03) was associated with outcome. After 2 years, there was a significant difference in global score for those with V70 Gy42.27 versus ≥42.27 mL (all P.05 at 2 and 3 years post-IMRT).There was no significant change in patient-reported urinary continence scores after postprostatectomy IMRT. Bladder V70 Gy was independently associated with a decrease in urinary continence scores. Further evaluation is necessary to optimize quality of life in these men.
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- 2016
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8. Dynamic intensity-weighted region of interest imaging for conebeam CT
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Xiaochuan Pan, Charles A. Pelizzari, and E Pearson
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Cone beam computed tomography ,Image quality ,Aperture ,Computer science ,Models, Biological ,01 natural sciences ,Article ,Collimated light ,030218 nuclear medicine & medical imaging ,law.invention ,010309 optics ,03 medical and health sciences ,0302 clinical medicine ,law ,Region of interest ,0103 physical sciences ,Image Processing, Computer-Assisted ,Image noise ,Humans ,Radiology, Nuclear Medicine and imaging ,Electrical and Electronic Engineering ,Instrumentation ,Image-guided radiation therapy ,Radiation ,Phantoms, Imaging ,Collimator ,Equipment Design ,Cone-Beam Computed Tomography ,Condensed Matter Physics ,Head ,Radiotherapy, Image-Guided ,Biomedical engineering - Abstract
BACKGROUND Patient dose from image guidance in radiotherapy is small compared to the treatment dose. However, the imaging beam is untargeted and deposits dose equally in tumor and healthy tissues. It is desirable to minimize imaging dose while maintaining efficacy. OBJECTIVE Image guidance typically does not require full image quality throughout the patient. Dynamic filtration of the kV beam allows local control of CT image noise for high quality around the target volume and lower quality elsewhere, with substantial dose sparing and reduced scatter fluence on the detector. METHODS The dynamic Intensity-Weighted Region of Interest (dIWROI) technique spatially varies beam intensity during acquisition with copper filter collimation. Fluence is reduced by 95% under the filters with the aperture conformed dynamically to the ROI during cone-beam CT scanning. Preprocessing to account for physical effects of the collimator before reconstruction is described. RESULTS Reconstructions show image quality comparable to a standard scan in the ROI, with higher noise and streak artifacts in the outer region but still adequate quality for patient localization. Monte Carlo modeling shows dose reduction by 10-15% in the ROI due to reduced scatter, and up to 75% outside. CONCLUSIONS The presented technique offers a method to reduce imaging dose by accepting increased image noise outside the ROI, while maintaining full image quality inside the ROI.
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- 2016
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9. Abstract 2773: Increased tumor control boosting hypoxic regions identified with EPR pO2 imaging in 2 tumor types
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Richard C. Miller, Darwin Bodero, Ralph R. Weichselbaum, Martyna Krzykawska-Serda, Boris Epel, Howard J. Halpern, Eugene D. Barth, Victor M. Tormyshev, Inna Gertsenshteyn, Charles A. Pelizzari, Subramanian V. Sundramoorthy, Matthew C. Maggio, and Bulent Aydogan
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Cancer Research ,medicine.diagnostic_test ,Chemistry ,business.industry ,Cancer ,Magnetic resonance imaging ,Intensity-modulated radiation therapy ,Tumor control ,medicine.disease ,law.invention ,Therapeutic index ,Oncology ,law ,Dose painting ,medicine ,Irradiation ,Electron paramagnetic resonance ,Nuclear medicine ,business - Abstract
Introduction: It has been known for over a century that all living systems develop radiation resistance under hypoxic conditions - low pO2. But giving extra radiation - dose painting - or boosting hypoxic tumors regions has not shown enhanced control in mammalian tumors. Pulse EPR quantitative pO2 values can be tomographically imaged as a magnetic resonance measurement with fixed stepped gradients. If there are distinct hypoxic regions, their images can then be extra radiation dose boosts. An isocentric animal irradiation system allowed conformal boosts to tiny resistant tumor subvolumes with 3D printed tungsten loaded plastic blocks. A randomized trial compared radiation boosts to hypoxic tumor vs well oxygenated tumor to determine hypoxic boost control advantage. Methods: Carcinomas (MCa4) and fibrosarcomas (FSa) in mouse legs with mean volume of 350 μl were treated with an XRAD225Cx animal irradiator to a dose that controlled 15% of tumors (TCD15), determined in separate experiments. Pulse electron paramagnetic resonance (EPR) using Spin Lattice Relaxation (SLR) and a soluble trityl spin probe has been shown to quantitatively image solution and tumor pO2. This and boost treatments were given after EPR pO2 imaging, reconstruction, registration with tumor defining T2 MRI, determination of all tumor hypoxic regions (pO2 ≤10 torr) and 3D printed tungsten loaded plastic aperture fabrication to radiate either well oxygenated or hypoxic tumor regions. Mice were followed for either 180 days (MCa4) or 90 days (FSa) sufficient for 99% of local failures to occur. Treatment of 3D hypoxic volumes was also analyzed for control dependence on surface to volume ratio (SVR). Results: Tumor control was doubled by radiating hypoxic tumor relative to well oxygenated tumor in 48 MCa4 tumors (p=0.013) and 54 FSa tumors (p=0.04). This was the first demonstration in mammalian tumors of an advantage to targeting hypoxic regions in tumors. It provides the first evidence of image based dose painting within the volume of the tumor. For MCa4 tumors, SVR values below median had significant increased survival (p=0.003) while for FSa tumors below median SVR tumors trended to increased survival (p=0.3). Clinical Relevance: Modern radiation delivery used intensity modulated radiation therapy (IMRT) for dose gradients outside the tumor volume to reduce doses to critical structures. Dose within the tumor have strict inhomogeneity limits. Allowance of higher dose variation within the tumor volume allows “hot spots” to resistant tumor volumes, sharper gradients outside the volume to protect critical structures. This will enhance the therapeutic ratio. Citation Format: Howard Halpern, Matthew Maggio, Eugene Barth, Darwin Bodero, Richard C. Miller, Charles A. Pelizzari, Martyna Krzykawska-Serda, Subramanian V. Sundramoorthy, Bulent Aydogan, Ralph R. Weichselbaum, Victor M. Tormyshev, Inna Gertsenshteyn, Boris Epel. Increased tumor control boosting hypoxic regions identified with EPR pO2 imaging in 2 tumor types [abstract]. In: Proceedings of the Annual Meeting of the American Association for Cancer Research 2020; 2020 Apr 27-28 and Jun 22-24. Philadelphia (PA): AACR; Cancer Res 2020;80(16 Suppl):Abstract nr 2773.
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- 2020
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10. Collision-avoiding imaging trajectories for linac mounted cone-beam CT
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E Pearson, Hania A. Al-Hallaq, Charles A. Pelizzari, Xiaochuan Pan, and Andrew M Davis
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Computer science ,Image quality ,Magnification ,Linear particle accelerator ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Computer vision ,Electrical and Electronic Engineering ,Instrumentation ,Image-guided radiation therapy ,Radiation ,business.industry ,Phantoms, Imaging ,Radiotherapy Planning, Computer-Assisted ,Detector ,Isocenter ,Cone-Beam Computed Tomography ,Condensed Matter Physics ,Collision ,030220 oncology & carcinogenesis ,Fixation (visual) ,Artificial intelligence ,Particle Accelerators ,business ,Radiotherapy, Image-Guided - Abstract
Background Some patients cannot be imaged with cone-beam CT for image-guided radiation therapy because their size, pose, or fixation devices cause collisions with the machine. Objective To investigate imaging trajectories that avoid such collisions by using virtual isocenter and variable magnification during acquisition while yielding comparable image quality. Methods The machine components most likely to collide are the gantry and kV detector. A virtual isocenter trajectory continuously moves the patient during gantry rotation to maintain an increased separation between the two. With dynamic magnification, the kV detector is dynamically moved to increase clearance for an angular range around the potential collision point while acquiring sufficient data to maintain the field-of-view. Both strategies were used independently and jointly with the resultant image quality evaluated against the standard circular acquisition. Results Collision avoiding trajectories show comparable contrast and resolution to standard techniques. For an anthropomorphic phantom, the RMSE is 0.97, and visual image fidelity is >0.96 for all trajectories when compared to a standard circular scan. Conclusions The proposed trajectories avoid machine-patient collisions while providing comparable image quality to the current standard thereby enabling CBCT imaging for patients that could not otherwise be scanned.
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- 2018
11. Collision prediction software for radiotherapy treatments
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Erik A. Pearson, Laura Padilla, and Charles A. Pelizzari
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Computer science ,Software Validation ,medicine.medical_treatment ,Whole body imaging ,Radiotherapy image guided ,Point cloud ,Computed tomography ,Iterative reconstruction ,Sensitivity and Specificity ,Patient Positioning ,Pattern Recognition, Automated ,law.invention ,Imaging, Three-Dimensional ,law ,Image Interpretation, Computer-Assisted ,medicine ,Medical imaging ,Humans ,Cylinder ,Whole Body Imaging ,External beam radiotherapy ,Radiation treatment planning ,Simulation ,medicine.diagnostic_test ,business.industry ,Reproducibility of Results ,Isocenter ,Collimator ,General Medicine ,Image Enhancement ,Collision ,Radiation therapy ,Subtraction Technique ,Patient Safety ,Nuclear medicine ,business ,Algorithms ,Software ,Radiotherapy, Image-Guided - Abstract
Purpose: This work presents a method of collision predictions for external beam radiotherapy using surface imaging. The present methodology focuses on collision prediction during treatment simulation to evaluate the clearance of a patient’s treatment position and allow for its modification if necessary. Methods: A Kinect camera (Microsoft, Redmond, WA) is used to scan the patient and immobilization devices in the treatment position at the simulator. The surface is reconstructed using the skanect software (Occipital, Inc., San Francisco, CA). The treatment isocenter is marked using simulated orthogonal lasers projected on the surface scan. The point cloud of this surface is then shifted to isocenter and converted from Cartesian to cylindrical coordinates. A slab models the treatment couch. A cylinder with a radius equal to the normal distance from isocenter to the collimator plate, and a height defined by the collimator diameter is used to estimate collisions. Points within the cylinder clear through a full gantry rotation with the treatment couch at 0° , while points outside of it collide. The angles of collision are reported. This methodology was experimentally verified using a mannequin positioned in an alpha cradle with both arms up. A planning CT scan of the mannequin was performed, two isocenters were marked in pinnacle, and this information was exported to AlignRT (VisionRT, London, UK)—a surface imaging system for patient positioning. This was used to ensure accurate positioning of the mannequin in the treatment room, when available. Collision calculations were performed for the two treatment isocenters and the results compared to the collisions detected the room. The accuracy of the Kinect-Skanect surface was evaluated by comparing it to the external surface of the planning CT scan. Results: Experimental verification results showed that the predicted angles of collision matched those recorded in the room within 0.5°, in most cases (largest deviation −1.2°). The accuracy study for the Kinect-Skanect surface showed an average discrepancy between the CT external contour and the surface scan of 2.2 mm. Conclusions: This methodology provides fast and reliable collision predictions using surface imaging. The use of the Kinect-Skanect system allows for a comprehensive modeling of the patient topography including all the relevant anatomy and immobilization devices that may lead to collisions. The use of this tool at the treatment simulation stage may allow therapists to evaluate the clearance of a patient’s treatment position and optimize it before the planning CT scan is performed. This can allow for safer treatments for the patients due to better collision predictions and improved clinical workflow by minimizing replanning and resimulations due to unforeseen clearance issues.
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- 2015
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12. Low-dose X-ray radiotherapy-radiodynamic therapy via nanoscale metal-organic frameworks enhances checkpoint blockade immunotherapy
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Kuangda Lu, Yang Xin Fu, Nining Guo, Christina Chan, Wenbin Lin, Michael T. Spiotto, Chunbai He, Kaiyuan Ni, Charles A. Pelizzari, Haidong Tang, Guangxu Lan, and Ralph R. Weichselbaum
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Colorectal cancer ,medicine.medical_treatment ,Biomedical Engineering ,Medicine (miscellaneous) ,Bioengineering ,Antineoplastic Agents ,02 engineering and technology ,X-Ray Therapy ,010402 general chemistry ,01 natural sciences ,Mice ,Cancer immunotherapy ,Cell Line, Tumor ,medicine ,Cytotoxic T cell ,Combined Modality Therapy ,Animals ,Humans ,Metal-Organic Frameworks ,Cell Death ,business.industry ,021001 nanoscience & nanotechnology ,medicine.disease ,Immune checkpoint ,0104 chemical sciences ,Computer Science Applications ,Blockade ,Nanostructures ,Radiation therapy ,Nanomedicine ,Cancer research ,Immunotherapy ,0210 nano-technology ,business ,Checkpoint Blockade Immunotherapy ,Biotechnology - Abstract
Checkpoint blockade immunotherapy relies on energized cytotoxic T cells attacking tumour tissue systemically. However, for many cancers, the reliance on T cell infiltration leads to low response rates. Conversely, radiotherapy has served as a powerful therapy for local tumours over the past 100 years, yet is rarely sufficient to cause systemic tumour rejection. Here, we describe a treatment strategy that combines nanoscale metal–organic framework (nMOF)-enabled radiotherapy–radiodynamic therapy with checkpoint blockade immunotherapy for both local and systemic tumour elimination. In mouse models of breast and colorectal cancer, intratumorally injected nMOFs treated with low doses of X-ray irradiation led to the eradication of local tumours and, when loaded with an inhibitor of the immune checkpoint molecule indoleamine 2,3-dioxygenase, the irradiated nMOFs led to consistent abscopal responses that rejected distal tumours. By combining the advantages of local radiotherapy and systemic tumour rejection via synergistic X-ray-induced in situ vaccination and indoleamine 2,3-dioxygenase inhibition, nMOFs may overcome some of the limitations of checkpoint blockade in cancer treatment.
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- 2017
13. Spin Lattice Relaxation EPR pO
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Boris, Epel, Martyna, Krzykawska-Serda, Victor, Tormyshev, Matthew C, Maggio, Eugene D, Barth, Charles A, Pelizzari, and Howard J, Halpern
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Oxygen ,Mice ,Gamma Rays ,Fibrosarcoma ,Printing, Three-Dimensional ,Electron Spin Resonance Spectroscopy ,Animals ,Bone Neoplasms ,Spin Labels ,X-Ray Microtomography ,Hypoxia ,Magnetic Resonance Imaging ,Models, Biological - Abstract
Radiation treatment success and high tumor oxygenation and success have been known to be highly correlated. This suggests that radiation therapy guided by images of tumor regions with low oxygenation, oxygen-guided radiation therapy (OGRT) may be a promising enhancement of cancer radiation treatment. Before applying the technique to human subjects, OGRT needs to be tested in animals, most easily in rodents. Electron paramagnetic resonance imaging provides quantitative maps of tissue and tumor oxygen in rodents with 1 mm spatial resolution and 1 torr pO
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- 2017
14. Electron Paramagnetic Resonance pO2 Image Tumor Oxygen-Guided Radiation Therapy Optimization
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Boris Epel, Howard J. Halpern, Matt Maggio, and Charles A. Pelizzari
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Materials science ,business.industry ,medicine.medical_treatment ,chemistry.chemical_element ,Cancer ,Booster dose ,Radiation ,Tumor Oxygenation ,medicine.disease ,Oxygen ,030218 nuclear medicine & medical imaging ,law.invention ,Radiation therapy ,03 medical and health sciences ,0302 clinical medicine ,chemistry ,law ,030220 oncology & carcinogenesis ,medicine ,Nuclear medicine ,business ,Electron paramagnetic resonance ,Radiation treatment planning - Abstract
Modern standards for radiation treatment do not take into account tumor oxygenation for radiation treatment planning. Strong correlation between tumor oxygenation and radiation treatment success suggests that oxygen-guided radiation therapy (OGRT) may be a promising enhancement of cancer radiation treatment. We have developed an OGRT protocol for rodents. Electron paramagnetic resonance (EPR) imaging is used for recording oxygen maps with high spatial resolution and excellent accuracy better than 1 torr. Radiation is delivered with an animal intensity modulated radiation therapy (IMRT) XRAD225Cx micro-CT/ therapy system. The radiation plan is delivered in two steps. First, a uniform 15% tumor control dose (TCD15) is delivered to the whole tumor. In the second step, an additional booster dose amounting to the difference between TCD98 and TCD15 is delivered to radio-resistant, hypoxic tumor regions. Delivery of the booster dose is performed using a multiport conformal beam protocol. For radiation beam shaping we used individual radiation blocks 3D-printed from tungsten infused ABS polymer. Calculation of beam geometry and the production of blocks is performed next to the EPR imager, immediately after oxygen imaging. Preliminary results demonstrate the sub-millimeter precision of the radiation delivery and high dose accuracy. The efficacy of the radiation treatment is currently being tested on syngeneic FSa fibrosarcoma tumors grown in the legs of C3H mice.
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- 2017
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15. Quantitative evaluation of internal marks made using MRgFUS as seen on MRI, CT, US, and digital color images – A pilot study
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Charles A. Pelizzari, Xiaobing Fan, Christopher M. Straus, Gregory S. Karczmar, Ari Partanen, Elizabeth Hipp, Sham Sokka, and James Vosicky
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Diagnostic Imaging ,medicine.medical_specialty ,Hot Temperature ,Biopsy ,medicine.medical_treatment ,Biophysics ,Color ,General Physics and Astronomy ,Pilot Projects ,Computed tomography ,Article ,Radiation, Ionizing ,medicine ,Medical imaging ,Animals ,Edema ,Radiology, Nuclear Medicine and imaging ,Muscle, Skeletal ,Ultrasonography ,Radiotherapy procedures ,medicine.diagnostic_test ,business.industry ,Reproducibility of Results ,Magnetic resonance imaging ,General Medicine ,Magnetic Resonance Imaging ,High-intensity focused ultrasound ,Rabbits ,Radiology ,Signal intensity ,Tomography, X-Ray Computed ,business - Abstract
This pilot study compared the detectability of internal thermal marks produced with MRI-guided focused ultrasound (MRgFUS) on MRI, computed tomography (CT), ultrasonography (US), and color images from digital scanning. Internal marks made using MRgFUS could potentially guide surgical, biopsy or radiotherapy procedures. New Zealand White rabbits (n = 6) thigh muscle were marked using a Philips MRgFUS system. Before and after sonications, rabbits were imaged using T1- and T2-weighted MRI. Then rabbits were sacrificed and imaging was performed using CT and US. After surgical excision specimens were scanned for color conspicuity analysis. Images were read by a radiologist and quantitative analysis of signal intensity was calculated for marks and normal muscle. Of a total of 19 excised marks, approximately 79%, 63%, and 62% were visible on MRI, CT, and US, respectively. The average maximum temperature elevation in the marks during MRgFUS was 39.7 ± 10.1 °C, and average dose diameter (i.e., the diameter of the area that achieved a thermal dose greater than 240 cumulative equivalent minutes at 43 °C) of the mark at the focal plane was 7.3 ± 2.1 mm. On MRI the average normalized signal intensities were significantly higher in marks compared to normal muscle (p < 0.05). On CT, the marked regions were approximately 10 HU lower than normal muscle (p < 0.05). The results demonstrate that MRgFUS can be used to create internal marks that are visible on MRI, CT and US.
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- 2014
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16. Bioluminescent Imaging of HPV-Positive Oral Tumor Growth and Its Response to Image-Guided Radiotherapy
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Charles A. Pelizzari, Matt Pytynia, Michael T. Spiotto, and Rong Zhong
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Genetically modified mouse ,Cancer Research ,Pathology ,medicine.medical_specialty ,Transgene ,medicine.medical_treatment ,Cre recombinase ,Mice, Transgenic ,Biology ,Article ,Mice ,medicine ,Animals ,Bioluminescence ,Luciferase ,Papillomaviridae ,Luciferases ,Mouth neoplasm ,Integrases ,biology.organism_classification ,Mice, Inbred C57BL ,Radiation therapy ,Disease Models, Animal ,Oncology ,Luminescent Measurements ,Cancer research ,Mouth Neoplasms ,Radiotherapy, Image-Guided - Abstract
The treatment paradigms for head and neck squamous cell cancer (HNSCC) are changing due to the emergence of human papillomavirus (HPV)-associated tumors possessing distinct molecular profiles and responses to therapy. Although patients with HNSCCs are often treated with radiotherapy, preclinical models are limited by the ability to deliver precise radiation to orthotopic tumors and to monitor treatment responses accordingly. To better model this clinical scenario, we developed a novel autochthonous HPV-positive oral tumor model to track responses to small molecules and image-guided radiation. We used a tamoxifen-regulated Cre recombinase system to conditionally express the HPV oncogenes E6 and E7 as well as a luciferase reporter (iHPV-Luc) in the epithelial cells of transgenic mice. In the presence of activated Cre recombinase, luciferase activity, and by proxy, HPV oncogenes were induced to 11-fold higher levels. In triple transgenic mice containing the iHPV-Luc, K14-CreERtam, and LSL-Kras transgenes, tamoxifen treatment resulted in oral tumor development with increased bioluminescent activity within 6 days that reached a maximum of 74.8-fold higher bioluminescence compared with uninduced mice. Oral tumors expressed p16 and MCM7, two biomarkers associated with HPV-positive tumors. After treatment with rapamycin or image-guided radiotherapy, tumors regressed and possessed decreased bioluminescence. Thus, this novel system enables us to rapidly visualize HPV-positive tumor growth to model existing and new interventions using clinically relevant drugs and radiotherapy techniques. Cancer Res; 74(7); 2073–81. ©2014 AACR.
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- 2014
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17. Validation of Normal Tissue Complication Probability Predictions in Individual Patient: Late Rectal Toxicity
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Kiran Devisetty, Vladimir A. Semenenko, Stanley L. Liauw, Charles A. Pelizzari, and Sergey Tarima
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Male ,Organs at Risk ,Oncology ,Cancer Research ,medicine.medical_specialty ,Normal tissue ,Risk Assessment ,Prostate cancer ,Goodness of fit ,Internal medicine ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Lack-of-fit sum of squares ,Radiation Injuries ,Probability ,Models, Statistical ,Radiation ,business.industry ,Incidence (epidemiology) ,Rectal toxicity ,Rectum ,Prostatic Neoplasms ,Dose-Response Relationship, Radiation ,medicine.disease ,Surgery ,Rectal Diseases ,Concordance correlation coefficient ,Gastrointestinal Hemorrhage ,Complication ,business - Abstract
Purpose To perform validation of risk predictions for late rectal toxicity (LRT) in prostate cancer obtained using a new approach to synthesize published normal tissue complication data. Methods and Materials A published study survey was performed to identify the dose-response relationships for LRT derived from nonoverlapping patient populations. To avoid mixing models based on different symptoms, the emphasis was placed on rectal bleeding. The selected models were used to compute the risk estimates of grade 2+ and grade 3+ LRT for an independent validation cohort composed of 269 prostate cancer patients with known toxicity outcomes. Risk estimates from single studies were combined to produce consolidated risk estimates. An agreement between the actuarial toxicity incidence 3 years after radiation therapy completion and single-study or consolidated risk estimates was evaluated using the concordance correlation coefficient. Goodness of fit for the consolidated risk estimates was assessed using the Hosmer-Lemeshow test. Results A total of 16 studies of grade 2+ and 5 studies of grade 3+ LRT met the inclusion criteria. The consolidated risk estimates of grade 2+ and 3+ LRT were constructed using 3 studies each. For grade 2+ LRT, the concordance correlation coefficient for the consolidated risk estimates was 0.537 compared with 0.431 for the best-fit single study. For grade 3+ LRT, the concordance correlation coefficient for the consolidated risk estimates was 0.477 compared with 0.448 for the best-fit single study. No evidence was found for a lack of fit for the consolidated risk estimates using the Hosmer-Lemeshow test ( P =.531 and P =.397 for grade 2+ and 3+ LRT, respectively). Conclusions In a large cohort of prostate cancer patients, selected sets of consolidated risk estimates were found to be more accurate predictors of LRT than risk estimates derived from any single study.
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- 2013
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18. Evaluation of the Prostate Bed for Local Recurrence After Radical Prostatectomy Using Endorectal Magnetic Resonance Imaging
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Charles A. Pelizzari, A. Oto, Stanley L. Liauw, Michael W. Vannier, Sean P. Pitroda, Walter M. Stadler, and Scott E. Eggener
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Male ,Cancer Research ,medicine.medical_specialty ,Prognostic variable ,Neoplasm, Residual ,medicine.medical_treatment ,Salvage therapy ,Prostate ,Interquartile range ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Aged ,Neoplasm Staging ,Prostatectomy ,Salvage Therapy ,Radiation ,medicine.diagnostic_test ,business.industry ,Patient Selection ,Prostatic Neoplasms ,Magnetic resonance imaging ,Middle Aged ,Prostate-Specific Antigen ,Magnetic Resonance Imaging ,Surgery ,Radiation therapy ,medicine.anatomical_structure ,Oncology ,Prostate surgery ,Radiology ,Neoplasm Grading ,Neoplasm Recurrence, Local ,business - Abstract
Purpose To summarize the results of a 4-year period in which endorectal magnetic resonance imaging (MRI) was considered for all men referred for salvage radiation therapy (RT) at a single academic center; to describe the incidence and location of locally recurrent disease in a contemporary cohort of men with biochemical failure after radical prostatectomy (RP), and to identify prognostic variables associated with MRI findings in order to define which patients may have the highest yield of the study. Methods and Materials Between 2007 and 2011, 88 men without clinically palpable disease underwent eMRI for detectable prostate-specific antigen (PSA) after RP. The median interval between RP and eMRI was 32 months (interquartile range, 14-57 months), and the median PSA level was 0.30 ng/mL (interquartile range, 0.19-0.72 ng/mL). Magnetic resonance imaging scans consisting of T2-weighted, diffusion-weighted, and dynamic contrast-enhanced imaging were evaluated for features consistent with local recurrence. The prostate bed was scored from 0-4, whereby 0 was definitely normal, 1 probably normal, 2 indeterminate, 3 probably abnormal, and 4 definitely abnormal. Local recurrence was defined as having a score of 3-4. Results Local recurrence was identified in 21 men (24%). Abnormalities were best appreciated on T2-weighted axial images (90%) as focal hypointense lesions. Recurrence locations were perianastomotic (67%) or retrovesical (33%). The only risk factor associated with local recurrence was PSA; recurrence was seen in 37% of men with PSA >0.3 ng/mL vs 13% if PSA ≤0.3 ng/mL ( P 3 and was directly associated with PSA ( r =0.5, P =.02). The correlation between MRI-based tumor volume and PSA was even stronger in men with positive margins ( r =0.8, P Conclusions Endorectal MRI can define areas of local recurrence after RP in a minority of men without clinical evidence of disease, with yield related to PSA. Further study is necessary to determine whether eMRI can improve patient selection and success of salvage RT.
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- 2013
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19. Reconstructing dynamic magnification CBCT scans with optimization-based reconstruction
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Andrew M. Davis, Charles A. Pelizzari, and Xiaochuan Pan
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Physics ,business.industry ,Truebeam ,Magnification ,Iterative reconstruction ,Collision ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Medical imaging ,Trajectory ,Computer vision ,Artificial intelligence ,Projection (set theory) ,business ,Image-guided radiation therapy - Abstract
In image guided radiation therapy (IGRT), certain patient treatment positions can lead to collisions of the patient with the linac gantry. When such collisions arise, it prevents the gantry from rotating around the patient and acquiring sufficient projection information for current analytic-based reconstruction methods such as FDK. One way to alleviate such a collision would be to move the patient or imaging arms at the offending gantry position changing the magnification. In this work, we investigate if optimization-based reconstruction methods can reconstruct from data acquired from such dynamic-magnification trajectories. Using real data from Varian's TrueBeam 2.0 kV imaging system, we found that these methods can reconstruct from trajectories where different magnifications are used in a single scan. This suggests these optimization-based reconstruction methods have the potential to enable collision avoiding imaging trajectories, improving patient comfort and reducing the costly clinical delays that currently arise from these collisions.
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- 2016
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20. Image-Guided Radiotherapy Targets Macromolecules through Altering the Tumor Microenvironment
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Qingbei Zhang, Oliver K. Appelbe, Stephen J. Kron, Ralph R. Weichselbaum, and Charles A. Pelizzari
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0301 basic medicine ,Pharmaceutical Science ,Mice, Nude ,Breast Neoplasms ,Enhanced permeability and retention effect ,Image guided radiotherapy ,Article ,Extracellular matrix ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Microscopy, Electron, Transmission ,Radiation, Ionizing ,Drug Discovery ,Tumor Microenvironment ,Medicine ,Animals ,Humans ,Tumor microenvironment ,business.industry ,Radiation effect ,Immunohistochemistry ,Xenograft Model Antitumor Assays ,Extravasation ,Endothelial stem cell ,Mice, Inbred C57BL ,030104 developmental biology ,Lymphatic system ,Nanomedicine ,030220 oncology & carcinogenesis ,Immunology ,Cancer research ,MCF-7 Cells ,Molecular Medicine ,Nanoparticles ,Female ,business ,Radiotherapy, Image-Guided - Abstract
Current strategies to target tumors with nanomedicines rely on passive delivery via the enhanced permeability and retention effect, leveraging the disorganized tumor microvasculature to promote macromolecule extravasation and the reduced lymphatic and venous drainage that favor retention. Nonetheless, FDA approvals and clinical use of nanomedicines have lagged, reflecting failure to display superiority over conventional formulations. Here, we have exploited image-guided X-irradiation to augment nanoparticle accumulation in tumors. A single 5 Gy dose of radiation, below that required to significantly delay tumor growth, can markedly enhance delivery of macromolecules and nanoparticles. The radiation effect was independent of endothelial cell integrity, suggesting a primary role for damage to microvascular pericytes and/or interstitial extracellular matrix. Significantly, radiation-guided delivery potentiated the therapeutic effects of PEGylated liposomal doxorubicin on experimental tumors. Applied to patients, these results suggest repurposing image-guided radiotherapy as a tool to guide cancer nanomedicine delivery, enhancing local control for primary tumors and metastatic disease while limiting systemic toxicity.
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- 2016
21. Optimization-based reconstruction for reduction of CBCT artifact in IGRT
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Dan Xia, Marcus Brehm, Charles A. Pelizzari, Pascal Paysan, Zheng Zhang, Dieter Seghers, Emil Y. Sidky, Peter Munro, and Xiaochuan Pan
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Artifact (error) ,medicine.diagnostic_test ,Computer science ,Image quality ,business.industry ,Computed tomography ,Imaging phantom ,030218 nuclear medicine & medical imaging ,Reduction (complexity) ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,medicine ,Computer vision ,Artificial intelligence ,Radiation treatment planning ,business ,Projection (set theory) ,Spatial analysis ,Image-guided radiation therapy - Abstract
Kilo-voltage cone-beam computed tomography (CBCT) plays an important role in image guided radiation therapy (IGRT) by providing 3D spatial information of tumor potentially useful for optimizing treatment planning. In current IGRT CBCT system, reconstructed images obtained with analytic algorithms, such as FDK algorithm and its variants, may contain artifacts. In an attempt to compensate for the artifacts, we investigate optimization-based reconstruction algorithms such as the ASD-POCS algorithm for potentially reducing arti- facts in IGRT CBCT images. In this study, using data acquired with a physical phantom and a patient subject, we demonstrate that the ASD-POCS reconstruction can significantly reduce artifacts observed in clinical re- constructions. Moreover, patient images reconstructed by use of the ASD-POCS algorithm indicate a contrast level of soft-tissue improved over that of the clinical reconstruction. We have also performed reconstructions from sparse-view data, and observe that, for current clinical imaging conditions, ASD-POCS reconstructions from data collected at one half of the current clinical projection views appear to show image quality, in terms of spatial and soft-tissue-contrast resolution, higher than that of the corresponding clinical reconstructions.
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- 2016
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22. Approaching Oxygen-Guided Intensity-Modulated Radiation Therapy
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Charles A. Pelizzari, Gage Redler, Victor M. Tormyshev, Howard J. Halpern, and Boris Epel
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Cone beam computed tomography ,medicine.medical_treatment ,Radiation ,Article ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Mice ,0302 clinical medicine ,medicine ,Animals ,Irradiation ,Mice, Inbred C3H ,Receiver operating characteristic ,Chemistry ,business.industry ,Pulse (signal processing) ,Electron Spin Resonance Spectroscopy ,Radiotherapy Dosage ,Neoplasms, Experimental ,Tumor Oxygenation ,Cone-Beam Computed Tomography ,Oxygen tension ,Radiation therapy ,Oxygen ,ROC Curve ,030220 oncology & carcinogenesis ,Radiotherapy, Intensity-Modulated ,Nuclear medicine ,business - Abstract
The outcome of cancer radiation treatment is strongly correlated with tumor oxygenation. The aim of this study is to use oxygen tension distributions in tumors obtained using Electron Paramagnetic Resonance (EPR) imaging to devise better tumor radiation treatment. The proposed radiation plan is delivered in two steps. In the first step, a uniform 50 % tumor control dose (TCD50) is delivered to the whole tumor. For the second step an additional dose boost is delivered to radioresistant, hypoxic tumor regions. FSa fibrosarcomas grown in the gastrocnemius of the legs of C3H mice were used. Oxygen tension images were obtained using a 250 MHz pulse imager and injectable partially deuterated trityl OX63 (OX71) spin probe. Radiation was delivered with a novel animal intensity modulated radiation therapy (IMRT) XRAD225Cx microCT/radiation therapy delivery system. In a simplified scheme for boost dose delivery, the boost area is approximated by a sphere, whose radius and position are determined using an EPR O2 image. The sphere that irradiates the largest fraction of hypoxic voxels in the tumor was chosen using an algorithm based on Receiver Operator Characteristic (ROC) analysis. We used the fraction of irradiated hypoxic volume as the true positive determinant and the fraction of irradiated normoxic volume as the false positive determinant in the terms of that analysis. The most efficient treatment is the one that demonstrates the shortest distance from the ROC curve to the upper left corner of the ROC plot. The boost dose corresponds to the difference between TCD90 and TCD50 values. For the control experiment an identical radiation dose to the normoxic tumor area is delivered.
- Published
- 2016
23. Lung texture in serial thoracic CT scans: Assessment of change introduced by image registrationa)
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Hania A. Al-Hallaq, Samuel G. Armato, William F. Sensakovic, Charles A. Pelizzari, Alexandra R. Cunliffe, Zacariah E. Labby, Michelle Ludwig, and Christopher M. Straus
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medicine.medical_specialty ,business.industry ,Image registration ,General Medicine ,Image segmentation ,030218 nuclear medicine & medical imaging ,Euclidean distance ,03 medical and health sciences ,0302 clinical medicine ,Image texture ,030220 oncology & carcinogenesis ,Medical imaging ,medicine ,Segmentation ,Tomography ,Affine transformation ,Radiology ,Nuclear medicine ,business ,Mathematics - Abstract
Purpose: The aim of this study was to quantify the effect of four image registration methods on lung texture features extracted from serial computed tomography(CT) scans obtained from healthy human subjects. Methods: Two chest CT scans acquired at different time points were collected retrospectively for each of 27 patients. Following automated lung segmentation, each follow-up CT scan was registered to the baseline scan using four algorithms: (1) rigid, (2) affine, (3) B-splines deformable, and (4) demons deformable. The registration accuracy for each scan pair was evaluated by measuring the Euclidean distance between 150 identified landmarks. On average, 1432 spatially matched 32 × 32-pixel region-of-interest (ROI) pairs were automatically extracted from each scan pair. First-order, fractal, Fourier, Laws’ filter, and gray-level co-occurrence matrix texture features were calculated in each ROI, for a total of 140 features. Agreement between baseline and follow-up scan ROI feature values was assessed by Bland–Altman analysis for each feature; the range spanned by the 95% limits of agreement of feature value differences was calculated and normalized by the average feature value to obtain the normalized range of agreement (nRoA). Features with small nRoA were considered “registration-stable.” The normalized bias for each feature was calculated from the feature value differences between baseline and follow-up scans averaged across all ROIs in every patient. Because patients had “normal” chest CT scans, minimal change in texture feature values between scan pairs was anticipated, with the expectation of small bias and narrow limits of agreement. Results: Registration with demons reduced the Euclidean distance between landmarks such that only 9% of landmarks were separated by ≥1 mm, compared with rigid (98%), affine (95%), and B-splines (90%). Ninety-nine of the 140 (71%) features analyzed yielded nRoA > 50% for all registration methods, indicating that the majority of feature values were perturbed following registration. Nineteen of the features (14%) had nRoA < 15% following demons registration, indicating relative feature value stability. Student'st-tests showed that the nRoA of these 19 features was significantly larger when rigid, affine, or B-splines registration methods were used compared with demons registration. Demons registration yielded greater normalized bias in feature value change than B-splines registration, though this difference was not significant (p = 0.15). Conclusions: Demons registration provided higher spatial accuracy between matched anatomic landmarks in serial CT scans than rigid, affine, or B-splines algorithms. Texture feature changes calculated in healthy lung tissue from serial CT scans were smaller following demons registration compared with all other algorithms. Though registration altered the values of the majority of texture features, 19 features remained relatively stable after demons registration, indicating their potential for detecting pathologic change in serial CT scans. Combined use of accurate deformable registration using demons and texture analysis may allow for quantitative evaluation of local changes in lung tissue due to disease progression or treatment response.
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- 2012
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24. Late Toxicity After Intensity-Modulated Radiation Therapy for Localized Prostate Cancer: An Exploration of Dose–Volume Histogram Parameters to Limit Genitourinary and Gastrointestinal Toxicity
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Charles A. Pelizzari, Stanley L. Liauw, Janine Fricano, Aaron W. Pederson, and David Correa
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Adult ,Male ,Organs at Risk ,Oncology ,Cancer Research ,medicine.medical_specialty ,Dose-volume histogram ,medicine.medical_treatment ,Urinary Bladder ,Urology ,Urogenital System ,Rectum ,Adenocarcinoma ,Androgen deprivation therapy ,Prostate cancer ,Prostate ,Internal medicine ,Humans ,Medicine ,Proctitis ,Radiology, Nuclear Medicine and imaging ,Radiation Injuries ,Aged ,Aged, 80 and over ,Analysis of Variance ,Radiation ,business.industry ,Genitourinary system ,Age Factors ,Prostatic Neoplasms ,Androgen Antagonists ,Radiotherapy Dosage ,Middle Aged ,medicine.disease ,Tumor Burden ,Gastrointestinal Tract ,Radiation therapy ,medicine.anatomical_structure ,Toxicity ,Radiotherapy, Intensity-Modulated ,business - Abstract
Purpose To characterize the late genitourinary (GU) and gastrointestinal (GI) toxicity for prostate cancer patients treated with intensity-modulated radiation therapy (IMRT) and propose dose–volume histogram (DVH) guidelines to limit late treatment-related toxicity. Methods and Materials In this study 296 consecutive men were treated with IMRT for adenocarcinoma of the prostate. Most patients received treatment to the prostate with or without proximal seminal vesicles (90%), to a median dose of 76 Gy. Concurrent androgen deprivation therapy was given to 150 men (51%) for a median of 4 months. Late toxicity was defined by Common Toxicity Criteria version 3.0 as greater than 3 months after radiation therapy completion. Four groupings of DVH parameters were defined, based on the percentage of rectal or bladder tissue receiving 70 Gy (V 70 ), 65 Gy (V 65 ), and 40 Gy (V 40 ). These DVH groupings, as well as clinical and treatment characteristics, were correlated to maximal Grade 2+ GU and GI toxicity. Results With a median follow-up of 41 months, the 4-year freedom from maximal Grade 2+ late toxicity was 81% and 91% for GU and GI systems, respectively, and by last follow-up, the rates of Grade 2+ GU and GI toxicity were 9% and 5%, respectively. On multivariate analysis, whole-pelvic IMRT was associated with Grade 2+ GU toxicity and age was associated with Grade 2+ GI toxicity. Freedom from Grade 2+ GI toxicity at 4 years was 100% for men with rectal V 70 ≤10%, V 65 ≤20%, and V 40 ≤40%; 92% for men with rectal V 70 ≤20%, V 65 ≤40%, and V 40 ≤80%; and 85% for men exceeding these criteria ( p = 0.13). These criteria were more highly associated with GI toxicity in men aged ≥70 years ( p = 0.07). No bladder dose–volume relationships were associated with the risk of GU toxicity. Conclusions IMRT is associated with low rates of severe GU or GI toxicity after treatment for prostate cancer. Rectal dose constraints may help limit late GI morbidity.
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- 2012
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25. Evaluation of sparse-view reconstruction from flat-panel-detector cone-beam CT
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Jeffrey H. Siewerdsen, Charles A. Pelizzari, Junguo Bian, Emil Y. Sidky, Xiao Han, Jerry L. Prince, and Xiaochuan Pan
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medicine.medical_specialty ,Cone beam computed tomography ,Computer science ,medicine.medical_treatment ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Image processing ,Computed tomography ,Iterative reconstruction ,Article ,Flat panel detector ,Image Processing, Computer-Assisted ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Computer vision ,Medical physics ,Projection (set theory) ,Radiological and Ultrasound Technology ,medicine.diagnostic_test ,Phantoms, Imaging ,business.industry ,Radiation dose ,Cone-Beam Computed Tomography ,Radiation therapy ,Algorithm design ,Artificial intelligence ,Minification ,Tomography ,business ,Head ,Algorithms - Abstract
Flat-panel-detector X-ray cone-beam computed tomography (CBCT) is used in a rapidly increasing host of imaging applications, including image-guided surgery and radiotherapy. The purpose of the work is to investigate and evaluate image reconstruction from data collected at projection views significantly fewer than what is used in current CBCT imaging. Specifically, we carried out imaging experiments by use of a bench-top CBCT system that was designed to mimic imaging conditions in image-guided surgery and radiotherapy; we applied an image reconstruction algorithm based on constrained total-variation (TV)-minimization to data acquired with sparsely sampled view-angles; and we conducted extensive evaluation of algorithm performance. Results of the evaluation studies demonstrate that, depending upon scanning conditions and imaging tasks, algorithms based on constrained TV-minimization can reconstruct images of potential utility from a small fraction of the data used in typical, current CBCT applications. A practical implication of the study is that the optimization of algorithm design and implementation can be exploited for considerably reducing imaging effort and radiation dose in CBCT.
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- 2010
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26. AuNP-DG: Deoxyglucose-Labeled Gold Nanoparticles as X-ray Computed Tomography Contrast Agents for Cancer Imaging
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J Li, Tijana Rajh, Ahmed Chaudhary, Bulent Aydogan, Charles A. Pelizzari, Metin Kurtoglu, Christian Wietholt, Peter Redmond, and Steven J. Chmura
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Cancer Research ,Tumor targeting ,Materials science ,media_common.quotation_subject ,Contrast Media ,Metal Nanoparticles ,Nanoparticle ,Cancer imaging ,chemistry.chemical_compound ,Microscopy, Electron, Transmission ,Cell Line, Tumor ,Neoplasms ,Humans ,Contrast (vision) ,Radiology, Nuclear Medicine and imaging ,media_common ,business.industry ,Deoxyglucose ,Oncology ,chemistry ,Colloidal gold ,Gold ,Tomography ,Tomography, X-Ray Computed ,2-Deoxy-D-glucose ,Nuclear medicine ,business ,Biomedical engineering - Abstract
To study the feasibility of using 2-deoxy-D-glucose (2-DG)-labeled gold nanoparticle (AuNP-DG) as a computed tomography (CT) contrast agent with tumor targeting capability through in vitro experiments.Gold nanoparticles (AuNP) were fabricated and were conjugated with 2-deoxy-D-glucose. The human alveolar epithelial cancer cell line, A-549, was chosen for the in vitro cellular uptake assay. Two groups of cell samples were incubated with the AuNP-DG and the unlabeled AuNP, respectively. Following the incubation, the cells were washed with sterile PBS to remove the excess gold nanoparticles and spun to cell pellets using a centrifuge. The cell pellets were imaged using a microCT scanner immediately after the centrifugation. The reconstructed CT images were analyzed using a commercial software package.Significant contrast enhancement in the cell samples incubated with the AuNP-DG with respect to the cell samples incubated with the unlabeled AuNP was observed in multiple CT slices.Results from this study demonstrate enhanced uptake of 2-DG-labeled gold nanoparticle by cancer cells in vitro and warrant further experiments to study the exact molecular mechanism by which the AuNP-DG is internalized and retained in the tumor cells.
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- 2010
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27. Characterization of response to radiation mediated gene therapy by means of multimodality imaging
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Marta Zamora, Rebecca Bell, Xiaobing Fan, Chad R. Haney, Charles A. Pelizzari, Ralph R. Weichselbaum, Adrian D. Parasca, Helena J. Mauceri, Gregory S. Karczmar, and Howard J. Halpern
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Pathology ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Genetic enhancement ,Magnetic resonance imaging ,Perfusion scanning ,Oxygenation ,Viral vector ,In vivo ,Medicine ,Combined Modality Therapy ,Radiology, Nuclear Medicine and imaging ,business ,Perfusion - Abstract
Imaging techniques are under development to facilitate early analysis of spatial patterns of tumor response to combined radiation and antivascular gene therapy. A genetically modified, replication defective adenoviral vector (Ad.EGR-TNFalpha), injected intratumorally, mediates infected cells to express tumor necrosis factor alpha (TNFalpha), which is increased after exposure to radiation. The goal of this study was to characterize an image based "signature" for response to this combined radiation and gene therapy in mice with human prostate xenografts. This study is part of an imaged guided therapy project where such a signature would be useful in guiding subsequent treatments. Changes in the tumor micro-environment were assessed using MRI registered with electron paramagnetic resonance imaging which provides images of tissue oxygenation. Dynamic contrast-enhanced MRI was used to assess tissue perfusion. When compared with null vector (control) treatment, the ratio of contrast agent (Gd-DTPA-BMA) washout rate to uptake rate was lower (P = 0.001) after treatment, suggesting a more balanced perfusion. Concomitantly, oxygenation significantly increased in the treated animals and decreased or did not change in the control animals (P < 0.025). This is the first report of minimally invasive, quantitative, absolute oxygen measurements correlated with tissue perfusion in vivo.
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- 2009
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28. Region‐of‐interest image reconstruction with intensity weighting in circular cone‐beam CT for image‐guided radiation therapy
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Seungryong Cho, Charles A. Pelizzari, E Pearson, and Xiaochuan Pan
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Cone beam computed tomography ,Image processing ,Iterative reconstruction ,Flat panel detector ,Pelvis ,Optics ,Contrast-to-noise ratio ,Neoplasms ,Image Processing, Computer-Assisted ,Image noise ,Humans ,Scattering, Radiation ,Polytetrafluoroethylene ,Image-guided radiation therapy ,Physics ,Phantoms, Imaging ,business.industry ,Radiotherapy Planning, Computer-Assisted ,X-Rays ,Reproducibility of Results ,Reconstruction algorithm ,Equipment Design ,General Medicine ,Cone-Beam Computed Tomography ,Radiation Imaging Physics ,Particle Accelerators ,Tomography, X-Ray Computed ,business ,Nuclear medicine ,Algorithms - Abstract
Imaging plays a vital role in radiation therapy and with recent advances in technology considerable emphasis has been placed on cone-beam CT (CBCT). Attaching a kV x-ray source and a flat panel detector directly to the linear accelerator gantry has enabled progress in target localization techniques, which can include daily CBCT setup scans for some treatments. However, with an increasing number of CT scans there is also an increasing concern for patient exposure. An intensity-weighted region-of-interest (IWROI) technique, which has the potential to greatly reduce CBCT dose, in conjunction with the chord-based backprojection-filtration (BPF) reconstruction algorithm, has been developed and its feasibility in clinical use is demonstrated in this article. A nonuniform filter is placed in the x-ray beam to create regions of two different beam intensities. In this manner, regions outside the target area can be given a reduced dose but still visualized with a lower contrast to noise ratio. Image artifacts due to transverse data truncation, which would have occurred in conventional reconstruction algorithms, are avoided and image noise levels of the low- and high-intensity regions are well controlled by use of the chord-based BPF reconstruction algorithm. The proposed IWROI technique can play an important role in image-guided radiation therapy.
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- 2009
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29. The development and testing of a digital PET phantom for the evaluation of tumor volume segmentation techniques
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Bill C. Penney, Michalis Aristophanous, and Charles A. Pelizzari
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medicine.diagnostic_test ,business.industry ,Image processing ,General Medicine ,Image segmentation ,equipment and supplies ,Imaging phantom ,Image texture ,Positron emission tomography ,Medical imaging ,Medicine ,Segmentation ,Radiation treatment planning ,business ,Nuclear medicine ,Biomedical engineering - Abstract
Methods for accurate tumor volume segmentation of positron emission tomography (PET) images have been under investigation in recent years partly as a result of the increased use of PET in radiation treatment planning (RTP). None of the developed automated or semiautomated segmentation methods, however, has been shown reliable enough to be regarded as the standard. One reason for this is that there is no source of well characterized and reliable test data for evaluating such techniques. The authors have constructed a digital tumor phantom to address this need. The phantom was created using the Zubal phantom as input to the SimSET software used for PET simulations. Synthetic tumors were placed in the lung of the Zubal phantom to provide the targets for segmentation. The authors concentrated on the lung, since much of the interest to include PET in RTP is for nonsmall cell lung cancer. Several tests were performed on the phantom to ensure its close resemblance to clinical PET scans. The authors measured statistical quantities to compare image intensity distributions from regions-of-interest (ROIs) placed in the liver, the lungs, and tumors in phantom and clinical reconstructions. Using ROIs they also made measurements of autocorrelation functions to ensure the image texture is similar in clinical and phantom data. The authors also compared the intensity profile and appearance of real and simulated uniform activity spheres within uniform background. These measurements, along with visual comparisons of the phantom with clinical scans, indicate that the simulated phantom mimics reality quite well. Finally, they investigate and quantify the relationship between the threshold required to segment a tumor and the inhomogeneity of the tumor's image intensity distribution. The tests and various measurements performed in this study demonstrate how the phantom can offer a reliable way of testing and investigating tumor volume segmentation in PET.
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- 2008
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30. Exact reconstruction of volumetric images in reverse helical cone-beam CT
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Seungryong Cho, Charles A. Pelizzari, Dan Xia, and Xiaochuan Pan
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Cone beam computed tomography ,Helical scan ,Trajectory ,Chord (music) ,Geometry ,General Medicine ,Iterative reconstruction ,Projection (set theory) ,Algorithm ,Rotation (mathematics) ,Image-guided radiation therapy ,Mathematics - Abstract
Helical scanning configuration has been used widely in diagnostic cone-beam computed tomography (CBCT) for acquiring data sufficient for exact image reconstruction over an extended volume. In image-guided radiation therapy (IGRT) and other applications of CBCT, it can be difficult, if not impossible, to implement mechanically a multiple-turn helical trajectory on the imaging systems due to hardware constraints. However, imaging systems in these applications often allow for the implementation of a reverse helical trajectory in which the rotation direction changes between two consecutive turns. Because the reverse helical trajectory satisfies Tuy’s condition, when projections of the imaged object are nontruncated, it yields data sufficient for exact image reconstruction within the reverse helix volume. The recently developed chord-based algorithms such as the backprojection filtration (BPF) algorithm can readily be applied to reconstructing images on chords of a reverse helical trajectory, and they can thus reconstruct an image within a volume covered by the chords. Conversely, the chord-based algorithms cannot reconstruct images within regions that are not intersected by chords. In a reverse helix volume, as shown below, chordless regions exist in which no images can thus be reconstructed by use of the chord-based algorithms. In this work, based upon Pack–Noo’s formula, a shift-invariant filtered backprojection (FBP) algorithm is derived for exact image reconstruction within the reverse helix volume, including the chordless region. Numerical studies have also been conducted to demonstrate the chordless region in a reverse helix volume and to validate the FBP algorithm for image reconstruction within the chordless region. Results of the numerical studies confirm that the FBP algorithm can exactly reconstruct an image within the entire reverse helix volume, including the chordless region. It is relatively straightforward to extend the FBP algorithm to reconstruct images for general trajectories, including reverse helical trajectories with variable pitch, tilted axis, and∕or additional segments between turns.
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- 2008
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31. Electron Paramagnetic Resonance Oxygen Image Hypoxic Fraction Plus Radiation Dose Strongly Correlates With Tumor Cure in FSa Fibrosarcomas
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Chad R. Haney, Katarzyna Pustelny, Charles A. Pelizzari, Joanna Bielanska, Rebecca Bell, Martyna Elas, Eugene D. Barth, Masha Kocherginsky, Colin A. McFaul, Danielle Hleihel, Howard J. Halpern, and Kang-Hyun Ahn
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Cancer Research ,Fibrosarcoma ,Partial Pressure ,medicine.medical_treatment ,chemistry.chemical_element ,Radiation Tolerance ,Oxygen ,Article ,law.invention ,Mice ,Oxygen Consumption ,Nuclear magnetic resonance ,law ,Animals ,Medicine ,Radiology, Nuclear Medicine and imaging ,Irradiation ,Electron paramagnetic resonance ,Mice, Inbred C3H ,Radiation ,Radiotherapy ,Tumor hypoxia ,business.industry ,Remission Induction ,Electron Spin Resonance Spectroscopy ,Radiotherapy Dosage ,Tumor Oxygenation ,medicine.disease ,Cell Hypoxia ,Radiation therapy ,Oncology ,chemistry ,Spin echo ,Female ,business ,Nuclear medicine - Abstract
Tumor hypoxia has long been known to produce resistance to radiation. In this study, electron paramagnetic resonance (EPR) oxygen imaging was investigated for its power to predict the success of tumor control according to tumor oxygenation level and radiation dose.A total of 34 EPR oxygen images were obtained from the legs of C3H mice bearing 0.5-cm(3) FSa fibrosarcomas under both normal (air breathing) and clamped tumor conditions. Under the same conditions as those during which the images were obtained, the tumors were irradiated to a variety of doses near the FSa dose at which 50% of tumors were cured. Tumor tissue was distinguished from normal tissue using co-registration of the EPR oxygen images with spin-echo magnetic resonance imaging of the tumor and/or stereotactic localization. The tumor voxel statistics in the EPR oxygen image included the mean and median partial pressure of oxygen and the fraction of tumor voxels below the specified partial pressure of oxygen values of 3, 6, and 10 mm Hg. Bivariate logistic regression analysis using the radiation dose and each of the EPR oxygen image statistics to determine which best separated treatment failure from success.The measurements of the dose at which 50% of tumors were cured were similar to those found in published data for this syngeneic tumor. Bivariate analysis of 34 tumors demonstrated that tumor cure correlated with dose (p = 0.004) and with a10 mm Hg hypoxic fraction (p = 0.023).Our results have shown that, together, radiation dose and EPR image hypoxic fraction separate the population of FSa fibrosarcomas that are cured from those that fail, thus predicting curability.
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- 2008
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32. Region-of-interest image reconstruction in circular cone-beam microCT
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Tong-Chuan He, Chin-Tu Chen, Xiaochuan Pan, Junguo Bian, Seungryong Cho, and Charles A. Pelizzari
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Cone beam computed tomography ,medicine.diagnostic_test ,business.industry ,Computer science ,Image quality ,Image processing ,Computed tomography ,General Medicine ,Iterative reconstruction ,Microcomputed tomography ,Data set ,Spiral Cone-Beam Computed Tomography ,Region of interest ,Medical imaging ,medicine ,Computer vision ,Artificial intelligence ,Computed radiography ,Image sensor ,business ,Nuclear medicine ,Image resolution - Abstract
Cone-beam microcomputed tomography (microCT) is one of the most popular choices for small animal imaging which is becoming an important tool for studying animal models with transplanted diseases. Region-of-interest (ROI) imaging techniques in CT, which can reconstruct an ROI image from the projection data set of the ROI, can be used not only for reducing imaging-radiation exposure to the subject and scatters to the detector but also for potentially increasing spatial resolution of the reconstructed images. Increasing spatial resolution in microCT images can facilitate improved accuracy in many assessment tasks. A method proposed previously for increasing CT image spatial resolution entails the exploitation of the geometric magnification in cone-beam CT. Due to finite detector size, however, this method can lead to data truncation for a large geometric magnification. The Feldkamp-Davis-Kress (FDK) algorithm yields images with artifacts when truncated data are used, whereas the recently developed backprojection filtration (BPF) algorithm is capable of reconstructing ROI images without truncation artifacts from truncated cone-beam data. We apply the BPF algorithm to reconstructing ROI images from truncated data of three different objects acquired by our circular cone-beam microCT system. Reconstructed images by use of the FDK and BPF algorithms from both truncated and nontruncated cone-beam data are compared. The results of the experimental studies demonstrate that, from certain truncated data, the BPF algorithm can reconstruct ROI images with quality comparable to that reconstructed from nontruncated data. In contrast, the FDK algorithm yields ROI images with truncation artifacts. Therefore, an implication of the studies is that, when truncated data are acquired with a configuration of a large geometric magnification, the BPF algorithm can be used for effective enhancement of the spatial resolution of a ROI image.
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- 2007
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33. Optimization of opacity function for computed tomography volume rendered images of the prostate using magnetic resonance reference volumes
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Ashesh B. Jani, Peter A.S. Johnstone, Charles A. Pelizzari, and Tim Fox
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Physics ,medicine.diagnostic_test ,Opacity ,business.industry ,Biomedical Engineering ,Health Informatics ,Computed tomography ,Magnetic resonance imaging ,General Medicine ,Function (mathematics) ,Computer Graphics and Computer-Aided Design ,Computer Science Applications ,medicine.anatomical_structure ,Prostate ,Volume visualization ,medicine ,Radiology, Nuclear Medicine and imaging ,Surgery ,Computer Vision and Pattern Recognition ,Nuclear medicine ,business ,Volume (compression) ,Image-guided radiation therapy - Abstract
Objective To enhance the opacity function for computed tomography (CT)-based prostate volume rendered (VR) images using reference magnetic resonance (MR) images.
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- 2007
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34. Optimization-based cone-beam CT reconstruction from a virtual isocenter treatment scan
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Andrew M. Davis, Charles A. Pelizzari, and Xiaochuan Pan
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Physics ,Tomographic reconstruction ,medicine.diagnostic_test ,business.industry ,Truebeam ,Isocenter ,Computed tomography ,Iterative reconstruction ,Linear particle accelerator ,Trajectory ,medicine ,Computer vision ,Artificial intelligence ,business ,Image-guided radiation therapy - Abstract
Linac-mounted, cone-beam computed tomography (CBCT) imaging systems help with patient setup and treatment volume verification in image guided radiation therapy (IGRT). However, analytic-based reconstruction algorithms, such as FDK, make assumptions about the scanning trajectory that restrict the image isocenter to the mechanical isocenter of the treatment gantry. This limitation prevents tomographic imaging during virtual isocenter treatments. This form of treatment utilizes of a treatment isocenter that is not at the mechanical isocenter of the linac. To implement such a treatment, the patient must be moved as the gantry rotates to ensure the correct distance between the source and virtual isocenter is maintained. Though a trajectory such as this violates the circular trajectory needed for FDK, new optimization-based reconstruction algorithms impose no assumptions of the acquisition trajectory. As such, these algorithms have to potential to reconstruct a volumetric image from the kV projections acquired during a virtual isocenter treatment. We demonstrated this by acquiring a CBCT scan of such a virtual isocenter trajectory in Varian's TrueBeam Developer Mode and subsequently reconstructing it.
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- 2015
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35. Imaging: The Basis for Effective Therapy
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George T.Y. Chen, Charles A. Pelizzari, and S. Vijayakumar
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medicine.medical_specialty ,Basis (linear algebra) ,business.industry ,medicine ,Medical physics ,business - Published
- 2015
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36. Evaluation of Treatment Plans Using Dose Volume Histograms
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Azhar Awan, Charles A. Pelizzari, George T.Y. Chen, and D.R. Spelbring
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business.industry ,Histogram ,Medicine ,business ,Nuclear medicine ,Volume (compression) - Published
- 2015
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37. Dual-energy (MV/kV) CT with probabilistic attenuation mapping for IGRT applications
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Charles A. Pelizzari, E Pearson, and Xiaochuan Pan
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Physics ,Artifact (error) ,medicine.medical_specialty ,Image quality ,business.industry ,Attenuation ,Linear particle accelerator ,Flat panel detector ,Optics ,Sampling (signal processing) ,medicine ,Medical physics ,business ,Beam (structure) ,Image-guided radiation therapy - Abstract
Imaging plays an important role in the delivery of external beam radiation therapy. It is used to confirm the setup of the patient and to ensure accurate targeting and delivery of the therapeutic radiation dose. Most modern linear accelerators come equipped with a flat panel detector opposite the MV source as well as an independent kV imaging system, typically mounted perpendicular to the MV beam. kV imaging provides superior soft tissue contrast and is typically lower dose to the patient than MV imaging, however it can suffer from artifacts caused by metallic objects such as implants and immobilization devices. In addition to being less artifact prone, MV imaging also provides a direct measure of the attenuation for the MV beam which is useful for computing the therapeutic dose distributions. Furthermore either system requires a large angular coverage, which is slow for large linear accelerators. We present a method for reconstructing tomographic images from data acquired at multiple x-ray beam energies using a statistical model of inherent physical properties of the imaged object. This approach can produce image quality superior to traditional techniques in the case of limited measurement data (angular sampling range, sampling density or truncated projections) and/or conditions in which the lower energy image would typically suffer from corrupting artifacts such as the presence of metals in the object. Both simulation and real data results are shown.
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- 2015
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38. Opacity Transfer Function Optimization for Volume-rendered Computed Tomography Images of the Prostate1
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Ashesh B. Jani, Charles A. Pelizzari, and John-Stockton Irick
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Opacity ,business.industry ,Computer science ,computer.software_genre ,Sample (graphics) ,Imaging phantom ,Voxel ,Histogram ,Metric (mathematics) ,Radiology, Nuclear Medicine and imaging ,Computer vision ,Artificial intelligence ,business ,computer ,Selection (genetic algorithm) ,Volume (compression) - Abstract
Rationale and Objectives The selection of an opacity transfer function is essential for volume visualization. Computed tomography (CT) scans of the pelvis were used to determine an optimal opacity transfer function for use in radiotherapy. Materials and Methods On sample datasets (a mathematical phantom and a patient pelvis CT scan), standard viewing orientations were selected to render the prostate. Opacity functions were selected via (1) trapezoidal manual selection, (2) trapezoidal semiautomatic selection, and (3) histogram volume-based selection. Using an established metric, the errors using each of these methods were computed. Results Trapezoidal manual opacity function optimization resulted in visually acceptable images, but the errors were considerable (6.3–9.1 voxel units). These errors could be reduced with the use of trapezoidal semiautomatic selection (4.9–6.2 voxel units) or with histogram volume-based selection (4.8–7.9 voxel units). As each visualization algorithm focused on enhancing the boundary of the prostate using a different approach, the scene information was considerably different using the three techniques. Conclusion Improved volume visualization of soft tissue interfaces was achieved using automated optimal opacity function determination, compared with manual selection.
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- 2005
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39. Biological effective dose for comparison and combination of external beam and low-dose rate interstitial brachytherapy prostate cancer treatment plans
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Christopher M. Hand, Charles A. Pelizzari, Ashesh B. Jani, Anthony E Lujan, Srinivasan Vijayakumar, John C. Roeske, and Gregory P. Zagaja
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Male ,medicine.medical_treatment ,Brachytherapy ,Rectum ,Effective dose (radiation) ,Prostate cancer ,Prostate ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,External beam radiotherapy ,Radiological and Ultrasound Technology ,business.industry ,Radiotherapy Planning, Computer-Assisted ,Prostatic Neoplasms ,Dose-Response Relationship, Radiation ,medicine.disease ,Combined Modality Therapy ,Radiation therapy ,medicine.anatomical_structure ,Urethra ,Oncology ,Radiotherapy, Conformal ,business ,Nuclear medicine ,Algorithms ,Relative Biological Effectiveness - Abstract
We report a methodology for comparing and combining dose information from external beam radiotherapy (EBRT) and interstitial brachytherapy (IB) components of prostate cancer treatment using the biological effective dose (BED). On a prototype early-stage prostate cancer patient treated with EBRT and low-dose rate I-125 brachytherapy, a 3-dimensional dose distribution was calculated for each of the EBRT and IB portions of treatment. For each component of treatment, the BED was calculated on a point-by-point basis to produce a BED distribution. These individual BED distributions could then be summed for combined therapies. BED dose-volume histograms (DVHs) of the prostate, urethra, rectum, and bladder were produced and compared for various combinations of EBRT and IB. Transformation to BED enabled computation of the relative contribution of each modality to the prostate dose, as the relative weighting of EBRT and IB was varied. The BED-DVHs of the prostate and urethra demonstrated dramatically increased inhomogeneity with the introduction of even a small component of IB. However, increasing the IB portion relative to the EBRT component resulted in lower dose to the surrounding normal structures, as evidenced by the BED-DVHs of the bladder and rectum. Conformal EBRT and low-dose rate IB conventional dose distributions were successfully transformed to the common “language” of BED distributions for comparison and for merging prostate cancer radiation treatment plans. The results of this analysis can assist physicians in quantitatively determining the best combination and weighting of radiation treatment modalities for individual patients.
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- 2004
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40. Image reconstruction with a shift-variant filtration in circular cone-beam CT
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Xiaochuan Pan, Lifeng Yu, and Charles A. Pelizzari
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Noise (signal processing) ,Physics::Medical Physics ,Resolution (electron density) ,Iterative reconstruction ,Electronic, Optical and Magnetic Materials ,Data acquisition ,Computer graphics (images) ,Filtration (mathematics) ,Computer Vision and Pattern Recognition ,Circular orbit ,Electrical and Electronic Engineering ,Image resolution ,Algorithm ,Software ,Beam (structure) ,Mathematics - Abstract
It is well known that cone-beam data acquired with a circular orbit are insufficient for exact image reconstruction. Despite this, because a cone-beam scanning configuration with a circular orbit is easy to implement in practice, it has been widely employed for data acquisition in, e.g., micro-CT and CT imaging in radiation therapy. The algorithm developed by Feldkamp, Davis, and Kress (FDK) and its modifications, such as the Tent–FDK (T-FDK) algorithm, have been used for image reconstruction from circular cone-beam data. In this work, we present an algorithm with spatially shift-variant filtration for image reconstruction in circular cone-beam CT. We performed computer-simulation studies to compare the proposed and existing algorithms. Numerical results in these studies demonstrated that the proposed algorithm has resolution properties comparable to, and noise properties better than, the FDK algorithm. As compared to the T-FDK algorithm, our proposed algorithm reconstructs images with an improved in-plane spatial resolution. © 2005 Wiley Periodicals, Inc. Int J Imaging Syst Technol, 14, 213–221, 2004; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/ima.20026
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- 2004
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41. Noninvasive identification of human central sulcus: a comparison of gyral morphology, functional MRI, dipole localization, and direct cortical mapping
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Jean-Paul Spire, Vernon L. Towle, Charles A. Pelizzari, D. Chu, Robert K. Erickson, Michael Scherg, Kenneth R. Hoffmann, Leila Khorasani, and Stephen J. Uftring
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Adult ,Male ,Cognitive Neuroscience ,Sensory system ,Blindness ,Brain mapping ,Surgical planning ,Memory ,Parietal Lobe ,Image Processing, Computer-Assisted ,medicine ,Humans ,Visual Pathways ,Sensory cortex ,Brain Mapping ,Middle Aged ,Central sulcus ,Functional imaging ,medicine.anatomical_structure ,Neurology ,Somatosensory evoked potential ,Space Perception ,Imagination ,Visual Perception ,Occipital Lobe ,Tomography ,Psychology ,Neuroscience ,Tomography, Emission-Computed ,Biomedical engineering - Abstract
The locations of the human primary hand cortical somatosensory and motor areas were estimated using structural and functional MRI, scalp-recorded somatosensory-evoked potential dipole localization, expert judgments based on cortical anatomy, and direct cortical stimulation and recording studies. The within-subject reliability of localization (across 3 separate days) was studied for eight normal subjects. Intraoperative validation was obtained from five neurosurgical patients. The mean discrepancy between the different noninvasive functional imaging methods ranged from 6 to 26 mm. Quantitative comparison of the noninvasive methods with direct intraoperative stimulation and recording studies did not reveal a significant mean difference in accuracy. However, the expert judgments of the location of the sensory hand areas were significantly more variable (maximum error, 39 mm) than the dipole or functional MRI techniques. It is concluded that because expert judgments are less reliable for identifying the cortical hand area, consideration of the findings of noninvasive functional MRI and dipole localization studies is desirable for preoperative surgical planning.
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- 2003
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42. Transient Inability to Distinguish Between Faces: Electrophysiologic Studies
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Jean-Paul Spire, Stephen J. Uftring, Hugh W. Wilson, Vernon L. Towle, Alexander G. Dimitrov, Ivan J. Torres, Robert K. Erickson, Charles A. Pelizzari, Trevor Mundel, and John Milton
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Adult ,medicine.medical_specialty ,Time Factors ,Physiology ,Face Presentation ,Audiology ,Right temporal lobe ,Face perception ,Physiology (medical) ,medicine ,Humans ,Brain Mapping ,Communication ,Fusiform gyrus ,business.industry ,Electroencephalography ,Magnetic Resonance Imaging ,Temporal Lobe ,Epileptic aura ,Electrodes, Implanted ,Electrophysiology ,Face discrimination ,Prosopagnosia ,Epilepsy, Temporal Lobe ,Pattern Recognition, Visual ,Neurology ,Face ,Evoked Potentials, Visual ,Female ,Neurology (clinical) ,Subdural electrodes ,Psychology ,business - Abstract
It is not known with certainty at which level of face processing by the cortex the distinction between a familiar and an unfamiliar face is made. Subdural electrodes were implanted under the fusiform gyrus of the right temporal lobe in a patient who developed an unusual inability to distinguish differences between faces as part of the epileptic aura ("all faces looked the same"). A cortical region located posterior to the epileptic focus was identified that exhibited a maximum evoked response to the presentation of facial images (N165), but not to objects, scenes, or character strings. Evoked potentials elicited by a variety of visual images indicated that any perturbation away from novel whole-face stimuli produced submaximal responses from this region of the right temporal lobe. Electrical stimulation of this region resulted in an impairment of face discrimination. It was found that presentation of familiar faces (grandmother, treating physician) produced a different response from that observed for novel faces. These observations demonstrate that within 165 msec of face presentation, and before the conscious precept of face familiarity has formed, this cortical region has already begun to distinguish between a familiar and an unfamiliar face.
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- 2003
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43. Quantitative tumor oxymetric images from 4D electron paramagnetic resonance imaging (EPRI): Methodology and comparison with blood oxygen level-dependent (BOLD) MRI
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Eugene D. Barth, Howard J. Halpern, Adrian D. Parasca, Martyna Elas, Colin Mailer, Gregory S. Karczmar, Marta A. Lewis, Jonathan N. River, Charles A. Pelizzari, and Benjamin B. Williams
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chemistry.chemical_element ,computer.software_genre ,Oxygen ,law.invention ,Mice ,Nuclear magnetic resonance ,Voxel ,law ,Carbogen ,Image Processing, Computer-Assisted ,medicine ,Animals ,Radiology, Nuclear Medicine and imaging ,Electron paramagnetic resonance ,Blood-oxygen-level dependent ,medicine.diagnostic_test ,Chemistry ,Electron Spin Resonance Spectroscopy ,Magnetic resonance imaging ,Neoplasms, Experimental ,Magnetic Resonance Imaging ,Hindlimb ,Oxygen tension ,Calibration ,Limiting oxygen concentration ,computer - Abstract
This work presents a methodology for obtaining quantitative oxygen concentration images in the tumor-bearing legs of living C3H mice. The method uses high-resolution electron paramagnetic resonance imaging (EPRI). Enabling aspects of the methodology include the use of injectable, narrow, single-line triaryl methyl spin probes and an accurate model of overmodulated spectra. Both of these increase the signal-to-noise ratio (SNR), resulting in high resolution in space (1 mm)(3) and oxygen concentrations (approximately 3 torr). Thresholding at 15% the maximum spectral amplitude gives leg/tumor shapes that reproduce those in photographs. The EPRI appears to give reasonable oxygen partial pressures, showing hypoxia (approximately 0-6 torr, 0-10(3) Pa) in many of the tumor voxels. EPRI was able to detect statistically significant changes in oxygen concentrations in the tumor with administration of carbogen, although the changes were not increased uniformly. As a demonstration of the method, EPRI was compared with nearly concurrent (same anesthesia) T(2)*/blood oxygen level-dependent (BOLD) MRI. There was a good spatial correlation between EPRI and MRI. Homogeneous and heterogeneous T(2)*/BOLD MRI correlated well with the quantitative EPRI. This work demonstrates the potential for EPRI to display, at high spatial resolution, quantitative oxygen tension changes in the physiologic response to environmental changes.
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- 2003
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44. Receiver operating characteristic analysis: a general tool for DNA array data filtration and performance estimation
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Yasushi Kataoka, Edwardine Nodzenski, Bernard Roizman, Samuel Hellman, James K. Park, Nikolai N. Khodarev, Ralph R. Weichselbaum, and Charles A. Pelizzari
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Receiver operating characteristic ,business.industry ,Pattern recognition ,Replicate ,Biology ,Bioinformatics ,Sensitivity and Specificity ,Thresholding ,law.invention ,ROC Curve ,law ,Data Interpretation, Statistical ,Genetics ,Gene chip analysis ,Cutoff ,Artificial intelligence ,Sensitivity (control systems) ,DNA microarray ,business ,Filtration ,Oligonucleotide Array Sequence Analysis - Abstract
A critical step for DNA array analysis is data filtration, which can reduce thousands of detected signals to limited sets of genes. Commonly accepted rules for such filtration are still absent. We present a rational approach, based on thresholding of intensities with cutoff levels that are estimated by receiver operating characteristic (ROC) analysis. The technique compares test results with known distributions of positive and negative signals. We apply the method to Atlas cDNA arrays, GeneFilters, and Affymetrix GeneChip. ROC analysis demonstrates similarities in the distribution of false and true positive data for these different systems. We illustrate the estimation of an optimal cutoff level for intensity-based filtration, providing the highest ratio of true to false signals. For GeneChip arrays, we derived filtration thresholds consistent with the reported data based on replicate hybridizations. Intensity-based filtration optimized with ROC combined with other types of filtration (for example, based on significances of differences and/or ratios), should improve DNA array analysis. ROC methodology is also demonstrated for comparison of the performance of different types of arrays, imagers, and analysis software.
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- 2003
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45. Reduction of computed tomography metal artifacts due to the Fletcher-Suit applicator in gynecology patients receiving intracavitary brachytherapy
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Christina Lund, John C. Roeske, Arno J. Mundt, Charles A. Pelizzari, and Xiaochuan Pan
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medicine.medical_treatment ,Brachytherapy ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Uterine Cervical Neoplasms ,Computed tomography ,Imaging phantom ,Image Processing, Computer-Assisted ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,In patient ,Projection (set theory) ,Reduction (orthopedic surgery) ,Artifact (error) ,medicine.diagnostic_test ,Phantoms, Imaging ,business.industry ,Intracavitary brachytherapy ,Oncology ,Female ,Artifacts ,Tomography, X-Ray Computed ,business ,Nuclear medicine ,Algorithms - Abstract
Purpose To evaluate a method of reducing computed tomography (CT) metal artifacts due to the Fletcher-Suit applicator. Methods and materials We apply a projection-interpolation algorithm to CT images containing artifacts from the brachytherapy applicator. Regions of projection data containing the applicator are interpolated, removing the metal from the projections. A new image is then reconstructed, and a pixel-by-pixel correction factor applied to the original image to reduce the severity of metal artifacts. This technique is applied to phantom and patient image data. Results Qualitative and quantitative comparisons of images produced before and after projection-interpolation show a significant reduction in metal artifacts. In patient images containing the tandem alone, this method almost completely eliminated the artifact. In slices containing both tandem and colpostats, the algorithm reduced artifacts but did not completely eliminate them. Conclusions The projection-interpolation method can be used to reduce the severity of metal artifacts caused by the Fletcher-Suit applicator.
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- 2003
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46. Magnet and gradient coil system for low-field EPR imaging
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Eugene D. Barth, Howard J. Halpern, Gareth R. Eaton, Sandra S. Eaton, George A. Rinard, Charles A. Pelizzari, and Richard W. Quine
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Materials science ,business.industry ,Physics::Medical Physics ,Linearity ,General Chemistry ,law.invention ,Magnetic field ,Transverse plane ,Optics ,Nuclear magnetic resonance ,Electromagnetic coil ,law ,Dipole magnet ,Magnet ,Homogeneity (physics) ,Physical and Theoretical Chemistry ,business ,Electron paramagnetic resonance ,Spectroscopy - Abstract
Air-core coils are more practical than iron-core magnets for producing the required magnetic field distribution for electron paramagnetic resonance imaging at frequencies of a few hundred megahertz. An air-core, air-cooled magnet/gradient coil system is presented in this paper, which is optimum in the sense that mathematically it produces fields, which for the number of coils specified, are as uniform (for the magnet) and as linear (for the gradient coils) as is possible over a spherical volume. The magnet is four-coil (eighth-order), the z-coordinate gradient coil system is two-coil, Maxwell (fifth order), and the transverse gradient coils are four-coil, Anderson (fifth order). The design tradeoffs included homogeneity and linearity specifications, compatibility with access needed for physiological studies, power requirements, and provisions for rapid scanning. Incremental adjustments of the positions of the magnet coils, based on uniformity measurements, facilitated the meeting of design specifications at a reasonable cost. The 81 cm magnet can operate continuously at 90 G and can scan to 140 G. A 15 cm diameter working volume has a homogeneity of about 40 ppm. Three-dimensional gradient coils are designed for 10 G/cm. © 2002 Wiley Periodicals, Inc. Concepts in Magnetic Resonance (Magn Reson Engineering) 15: 51–58, 2002.
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- 2002
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47. Late toxicity and quality of life after definitive treatment of prostate cancer: redefining optimal rectal sparing constraints for intensity-modulated radiation therapy
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Stanley L. Liauw, Sravana K. Chennupati, Rangesh Kunnavakkam, and Charles A. Pelizzari
- Subjects
Male ,Cancer Research ,Dose-volume histogram ,medicine.medical_specialty ,medicine.medical_treatment ,Urology ,Rectum ,Urogenital System ,radiation therapy ,Prostate cancer ,Quality of life ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Prospective Studies ,Radiation Injuries ,Aged ,Aged, 80 and over ,Univariate analysis ,Genitourinary system ,business.industry ,Prostatic Neoplasms ,Clinical Cancer Research ,Middle Aged ,medicine.disease ,prostate cancer ,Surgery ,Radiation therapy ,medicine.anatomical_structure ,Urinary Incontinence ,Dose–volume histogram ,Oncology ,quality of life ,Toxicity ,Radiotherapy, Intensity-Modulated ,business ,Radiotherapy, Image-Guided - Abstract
The objective of this study was to assess late toxicity and quality of life (QOL) for patients receiving definitive intensity-modulated radiotherapy (IMRT) and image-guided radiation therapy (IGRT) with regard to normal tissue sparing objectives. Three hundred and seventy-two consecutive men treated with definitive IMRT for prostate adenocarcinoma. Toxicity was graded by CTC v3.0 genitourinary (GU) and gastrointestinal (GI) toxicity at each follow-up visit. Patient-reported QOL (EPIC-26) was prospectively collected for a subset of men. Dosimetric data for bladder and rectum were compared to toxicity and QOL global domain scores, specifically analyzing outcomes for men who met ideal rectal constraints (V70
- Published
- 2014
48. Quantitative analysis of DNA array autoradiographs
- Author
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Douglas P. Calvin, Charles A. Pelizzari, Nalin Gupta, Nikolai N. Khodarev, and Ralph R. Weichselbaum
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Genetics ,business.industry ,Peak fitting ,Computational biology ,Biology ,Molecular diagnostics ,Article ,Gene Expression Regulation, Neoplastic ,Gene expression profiling ,Software ,Quantitative analysis (finance) ,Computer software ,Tumor Cells, Cultured ,Autoradiography ,Humans ,RNA, Neoplasm ,DNA microarray ,business ,Large-Scale Sequencing ,Algorithms ,Oligonucleotide Array Sequence Analysis - Abstract
DNA arrays and chips are powerful new tools for gene expression profiling. Current arrays contain hundreds or thousands of probes and large scale sequencing and screening projects will likely lead to the creation of global genomic arrays. DNA arrays and chips will be key in understanding how genes respond to specific changes of environment and will also greatly assist in drug discovery and molecular diagnostics. To facilitate widespread realization of the quantitative potential of this approach, we have designed procedures and software which facilitate analysis of autoradiography films with accuracy comparable to phosphorimaging devices. Algorithms designed for analysis of DNA array autoradiographs incorporate 3-D peak fitting of features on films and estimation of local backgrounds. This software has a flexible grid geometry and can be applied to different types of DNA arrays, including custom arrays.
- Published
- 2000
- Full Text
- View/download PDF
49. Volume Visualization in Radiation Treatment Planning
- Author
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George T.Y. Chen and Charles A. Pelizzari
- Subjects
medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Radiography ,Dose distribution ,Virtual reality ,Interactive displays ,Visualization ,Radiation therapy ,Volume visualization ,Computer graphics (images) ,Medicine ,Radiology, Nuclear Medicine and imaging ,Medical physics ,business ,Radiation treatment planning - Abstract
Radiation treatment planning (RTP), historically an image-intensive discipline and one of the first areas in which 3D information from imaging was clinically applied, has become even more critically dependent on accurate 3D definition of target and non-target structures in recent years with the advent of conformal radiation therapy. In addition to the interactive display of wireframe or shaded surface models of anatomic objects, proposed radiation beams, beam modifying devices, and calculated dose distributions, recently significant use has been made of direct visualization of relevant anatomy from image data. Dedicated systems are commercially available for the purpose of geometrically optimizing beam placement, implementing in virtual reality the functionality of standard radiation therapy simulators. Such “CT simulation” systems rely heavily on 3D visualization and on reprojection of image data to produce simulated radiographs for comparison with either diagnostic-quality radiographs made on a simulato...
- Published
- 2000
- Full Text
- View/download PDF
50. In the radiotherapy of prostate cancer, technique determines the doses to the penile structures
- Author
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Leon C. Myrianthopoulos, Florin Vaida, Charles A. Pelizzari, J. Dabrowski, A. Nguyen, J. Rosengarten, Srinivasan Vijayakumar, and G. T. Y. Chen
- Subjects
Male ,medicine.medical_specialty ,medicine.medical_treatment ,Urinary Bladder ,Planning target volume ,Conformal radiotherapy ,Radiation Dosage ,Prostate cancer ,Prostate ,medicine ,Humans ,Dosimetry ,Radiology, Nuclear Medicine and imaging ,In patient ,Radiation treatment planning ,Retrospective Studies ,business.industry ,Penile Erection ,Rectum ,Prostatic Neoplasms ,General Medicine ,medicine.disease ,Surgery ,Radiation therapy ,medicine.anatomical_structure ,Radiotherapy, Conformal ,business ,Nuclear medicine ,Penis - Abstract
For 11 consecutive prostate cancer patients undergoing three-dimensional conformal radiotherapy (3DCRT) in our institution, penile structures (PNS) were outlined in CT images obtained for treatment planning purposes. Dose-volume histograms (DVHs) were compared in order to study dose-volume relations for three techniques: 4FLD, an axial coplanar, four-field box technique; 6FLD, a six-field coplanar technique; and 4NAX, a coplanar but non-axial, four-field technique. All three techniques delivered equal doses to the planning target volumes (PTV). Our statistical analyses strongly indicate that the three techniques can be ranked as 6FLD better than 4FLD (and 4FLD better than 4NAX) as far as irradiating PNS volume during treatment of prostate cancer (PC) is concerned. For each technique, there is a "spread" owing to differences in patient anatomy and/or target size, position, and extent, but each technique has a similar "profile" or "shape" distinct from other techniques. Whether irradiating smaller volumes of PNS will influence the sexual potency outcome remains to be demonstrated. However, PNS should be considered as another critical structure in addition to rectum, bladder and femoral heads in the radiotherapy (RT) of PC, especially in 3DCRT dose escalation studies. Sexual potency outcomes can be correlated to dose-volume relations in the future and this will help refine radiotherapy techniques further.
- Published
- 1999
- Full Text
- View/download PDF
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