1. Additional file 2 of Diet, obesity, and the gut microbiome as determinants modulating metabolic outcomes in a non-human primate model
- Author
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Newman, Tiffany M., Shively, Carol A., Register, Thomas C., Appt, Susan E., Hariom Yadav, Colwell, Rita R., Fanelli, Brian, Dadlani, Manoj, Karlis Graubics, Nguyen, Uyen Thao, Sivapriya Ramamoorthy, Uberseder, Beth, Kenysha Y. J. Clear, Wilson, Adam S., Reeves, Kimberly D., Chappell, Mark C., Tooze, Janet A., and Cook, Katherine L.
- Subjects
genetic structures - Abstract
Additional file 1: Supplemental Table 1. Non-human primate diets replicating human Western and Mediterranean dietary patterns. Supplemental Figure S1. Individual read statistics on each sample. Samples ranged from 13,694,588 to 28,756,486 reads with no significant differences in reads between dietary patterns. Supplemental Figure S2. Diet, not pen effects, drive microbiome populations. A. PCoA of bacterial beta diversity based on the Bray-Curtis dissimilarity; different solid color spheres indicates subjects housed in same pen. B. Shannon diversity of each subject; different solid color spheres indicates subjects housed in same pen. Supplemental Figure S3. Diet shifts viral and protozoa populations in the gut microbiome. A. Relative abundance of viral species in different fecal samples is visualized by bar plots. Samples are aggregated by diet cohort. Each colored box represents a viral species. The height of a color box represents the relative abundance of that organism within the sample. “Other” represents lower abundance taxa (
- Published
- 2021
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