284 results on '"Brian Thompson"'
Search Results
2. Impaired GSH biosynthesis disrupts eye development, lens morphogenesis and PAX6 function
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Kevin L. Schey, Brian Thompson, Ying Chen, Emily A. Davidson, Vasilis Vasiliou, Jaya Prakash Golla, David J. Orlicky, Rolando Garcia-Milian, David C. Thompson, and Nicholas Apostolopoulos
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Genetically modified mouse ,PAX6 Transcription Factor ,Mice, Transgenic ,Biology ,Article ,Mice ,chemistry.chemical_compound ,Transactivation ,Crystallin ,Lens, Crystalline ,Morphogenesis ,Animals ,Humans ,Buthionine sulfoximine ,Eye Proteins ,Forkhead Transcription Factors ,Glutathione ,Molecular biology ,eye diseases ,Ophthalmology ,HEK293 Cells ,GCLC ,chemistry ,Eye development ,sense organs ,PAX6 - Abstract
Purpose The purpose of this study was to elucidate the role and molecular consequences of impaired glutathione (GSH) biosynthesis on eye development. Methods GSH biosynthesis was impaired in surface ectoderm-derived ocular tissues by crossing Gclcf/f mice with hemizygous Le-Cre transgenic mice to produce Gclcf/f/Le-CreTg/- (KO) mice. Control mice included Gclcf/f and Gclcwt/wt/Le-CreTg/- mice (CRE). Eyes from all mice (at various stages of eye development) were subjected to histological, immunohistochemical, Western blot, RT-qPCR, RNA-seq, and subsequent Gene Ontology, Ingenuity Pathway Analysis and TRANSFAC analyses. PAX6 transactivation activity was studied using a luciferase reporter assay in HEK293T cells depleted of GSH using buthionine sulfoximine (BSO). Results Deletion of Gclc diminished GSH levels, increased reactive oxygen species (ROS), and caused an overt microphthalmia phenotype characterized by malformation of the cornea, iris, lens, and retina that is distinct from and much more profound than the one observed in CRE mice. In addition, only the lenses of KO mice displayed reduced crystallin (α, β), PITX3 and Foxe3 expression. RNA-seq analyses at postnatal day 1 revealed 1552 differentially expressed genes (DEGs) in the lenses of KO mice relative to those from Gclcf/f mice, with Crystallin and lens fiber cell identity genes being downregulated while lens epithelial cell identity and immune response genes were upregulated. Bioinformatic analysis of the DEGs implicated PAX6 as a key upstream regulator. PAX6 transactivation activity was impaired in BSO-treated HEK293T cells. Conclusions These data suggest that impaired ocular GSH biosynthesis may disrupt eye development and PAX6 function.
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- 2021
3. Placing human gene families into their evolutionary context
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Alex Dornburg, Rittika Mallik, Zheng Wang, Moisés A. Bernal, Brian Thompson, Elspeth A. Bruford, Daniel W. Nebert, Vasilis Vasiliou, Laurel R. Yohe, Jeffrey A. Yoder, Jeffrey P. Townsend, Apollo - University of Cambridge Repository, and Yoder, Jeffrey A [0000-0002-6083-1311]
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Evolution, Molecular ,Genome ,Base Sequence ,Drug Discovery ,Genetics ,Animals ,Humans ,Molecular Medicine ,Genomics ,Review ,Molecular Biology ,Phylogeny - Abstract
Following the draft sequence of the first human genome over 20 years ago, we have achieved unprecedented insights into the rules governing its evolution, often with direct translational relevance to specific diseases. However, staggering sequence complexity has also challenged the development of a more comprehensive understanding of human genome biology. In this context, interspecific genomic studies between humans and other animals have played a critical role in our efforts to decode human gene families. In this review, we focus on how the rapid surge of genome sequencing of both model and non-model organisms now provides a broader comparative framework poised to empower novel discoveries. We begin with a general overview of how comparative approaches are essential for understanding gene family evolution in the human genome, followed by a discussion of analyses of gene expression. We show how homology can provide insights into the genes and gene families associated with immune response, cancer biology, vision, chemosensation, and metabolism, by revealing similarity in processes among distant species. We then explain methodological tools that provide critical advances and show the limitations of common approaches. We conclude with a discussion of how these investigations position us to gain fundamental insights into the evolution of gene families among living organisms in general. We hope that our review catalyzes additional excitement and research on the emerging field of comparative genomics, while aiding the placement of the human genome into its existentially evolutionary context.
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- 2022
- Full Text
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4. 1040 A population of ectoenzyme expressing T-cells with an immunosuppressive phenotype are associated with checkpoint immunotherapy resistance in metastatic melanoma patients
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David Woods, Carol Amato, Ann Strange, Brian Thompson, Jeffrey Weber, and Ankita Mitra
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- 2022
5. 1466 Novel cell phenotypes correlated with checkpoint immunotherapy responses identified in the tumor and immune microenvironment of patients with metastatic melanoma
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Brian Thompson, Ann Strange, Jonathan Hester-McCullough, David Woods, and Carol Amato
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- 2022
6. 925 PhenoComb, a tool for evaluating complex phenotypes in high-dimension cytometry datasets
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Ann Strange, David Woods, Brian Thompson, Carol Amato, and Paulo Burke
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- 2022
7. 285 Multiomic analysis of TIL suggests that CD4+ polarization represses TIL expansion and CD8+ activation and is associated with progression of disease
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Brian Thompson, David Woods, Ann Strange, Carol Amato, Jonathan Hester-McCullough, Jeffrey Weber, and Amod Sarnaik
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- 2022
8. PMR BOLD: Cancer rehabilitation medicine core services
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Eric Wisotzky, Sean Smith, Lisa Ruppert, R. Samuel Mayer, Samman Shahpar, Brian McMichael, Megan Clark, Megan Brunner, Brian Thompson, and Mary Vargo
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Neurology ,Neoplasms ,Rehabilitation ,Humans ,Internship and Residency ,Physical Therapy, Sports Therapy and Rehabilitation ,Neurology (clinical) ,Physical and Rehabilitation Medicine ,Physical Therapy Modalities - Published
- 2022
9. Increased Risk of Preterm Birth in a Native American Population Concurrent With the COVID-19 Pandemic [ID: 1377321]
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Nicholas Baranco, Alexander Mastrogiannis, Dimitrios Mastrogiannis, and Brian Thompson
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Obstetrics and Gynecology - Published
- 2023
10. Lavallée, Calixa
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Brian Thompson
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- 2022
11. Is ACT-Informed Exposure a Viable Treatment for Excoriation Disorder? A Multiple Baseline Study
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Brian Thompson
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Clinical Psychology ,Habits ,Arts and Humanities (miscellaneous) ,Mental Disorders ,Developmental and Educational Psychology ,Humans ,sense organs - Abstract
This study piloted the use of ACT-informed exposure as an adjunct to habit reversal training (HRT) for excoriation disorder (ExD). Using a nonconcurrent multiple baseline single case design, four participants completed sessions of exposure and HRT. Repeated measures and self-report data were collected on skin picking and psychological flexibility. Two participants completed HRT followed by exposure, and two participants completed exposure followed by HRT. Results support the effectiveness of HRT in reducing picking. Results suggest exposure may have some impact in reducing picking, but effects were weaker compared to HRT. Contrary to predictions, repeated measures and self-report data did not indicate consistent improvement in psychological flexibility during exposure phases. As any reduction in picking may be clinically meaningful and all participants maintained gains at follow-up, there is some indication that exposure may be a second-line treatment worth further study. Limitations and future areas of research are discussed.
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- 2022
12. PhenoComb: A discovery tool to assess complex phenotypes in high-dimension, single-cell datasets
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Paulo E. P. Burke, Ann Strange, Emily Monk, Brian Thompson, Carol M. Amato, and David M. Woods
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MotivationHigh-dimension cytometry assays can simultaneously measure dozens of markers, enabling the investigation of complex phenotypes. However, as manual gating relies on previous biological knowledge, few marker combinations are often assessed. This results in complex phenotypes with potential for biological relevance being overlooked. Here we present PhenoComb, an R package that allows agnostic exploration of phenotypes by assessing all combinations of markers.DesignPhenoComb uses signal intensity thresholds to assign markers to discrete states (e.g. negative, low, high) and then counts the number of cells per sample from all possible marker combinations in a memory-safe manner. Time and disk space are the only constraints on the number of markers evaluated. PhenoComb also provides several approaches to perform statistical comparisons, evaluate the relevance of phenotypes, and assess the independence of identified phenotypes. PhenoComb allows users to guide analysis by adjusting several function arguments such as identifying parent populations of interest, filtering of low-frequency populations, and defining a maximum complexity of phenotypes to evaluate. We have designed PhenoComb to be compatible with local computer or server-based use.ResultsIn testing of PhenoComb’s performance on synthetic datasets, computation on 16 markers was completed in the scale of minutes and up to 26 markers in hours. We applied PhenoComb to two publicly available datasets: an HIV flow cytometry dataset (12 markers and 421 samples) and the COVIDome CyTOF dataset (40 markers and 99 samples). In the HIV dataset, PhenoComb identified immune phenotypes associated with HIV seroconversion, including those highlighted in the original publication. In the COVID dataset, we identified several immune phenotypes with altered frequencies in infected individuals relative to healthy individuals. Collectively, PhenoComb represents a powerful discovery tool for agnostically assessing high-dimension, single-cell data.AvailabilityThe PhenoComb R package can be downloaded from https://github.com/SciOmicsLab/PhenoComb
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- 2022
13. Update of the keratin gene family: evolution, tissue-specific expression patterns, and relevance to clinical disorders
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Minh Ho, Brian Thompson, Jeffrey Nicholas Fisk, Daniel W. Nebert, Elspeth A. Bruford, Vasilis Vasiliou, Christopher G. Bunick, Bunick, Christopher G [0000-0002-4011-8308], Apollo - University of Cambridge Repository, Bunick, Christopher G. [0000-0002-4011-8308], and Bruford, Elspeth [0000-0002-8380-5247]
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Intermediate filament ,Genome ,integumentary system ,Gene Family Update ,QH426-470 ,Gene duplications ,Synteny ,MrBayes program to estimate phylogeny ,Mice ,Keratin ,Evolutionary blooms ,Drug Discovery ,Genetics ,Keratins, Type I ,Molecular Medicine ,Medicine ,Markov-chain Monte Carlo (MCMC) ,Animals ,Keratins ,Gene expression ,Molecular Biology ,Zebrafish - Abstract
Intermediate filament (IntFil) genes arose during early metazoan evolution, to provide mechanical support for plasma membranes contacting/interacting with other cells and the extracellular matrix. Keratin genes comprise the largest subset of IntFil genes. Whereas the first keratin gene appeared in sponge, and three genes in arthropods, more rapid increases in keratin genes occurred in lungfish and amphibian genomes, concomitant with land animal-sea animal divergence (~ 440 to 410 million years ago). Human, mouse and zebrafish genomes contain 18, 17 and 24 non-keratin IntFil genes, respectively. Human has 27 of 28 type I “acidic” keratin genes clustered at chromosome (Chr) 17q21.2, and all 26 type II “basic” keratin genes clustered at Chr 12q13.13. Mouse has 27 of 28 type I keratin genes clustered on Chr 11, and all 26 type II clustered on Chr 15. Zebrafish has 18 type I keratin genes scattered on five chromosomes, and 3 type II keratin genes on two chromosomes. Types I and II keratin clusters—reflecting evolutionary blooms of keratin genes along one chromosomal segment—are found in all land animal genomes examined, but not fishes; such rapid gene expansions likely reflect sudden requirements for many novel paralogous proteins having divergent functions to enhance species survival following sea-to-land transition. Using data from the Genotype-Tissue Expression (GTEx) project, tissue-specific keratin expression throughout the human body was reconstructed. Clustering of gene expression patterns revealed similarities in tissue-specific expression patterns for previously described “keratin pairs” (i.e., KRT1/KRT10, KRT8/KRT18, KRT5/KRT14, KRT6/KRT16 and KRT6/KRT17 proteins). The ClinVar database currently lists 26 human disease-causing variants within the various domains of keratin proteins. Supplementary Information The online version contains supplementary material available at 10.1186/s40246-021-00374-9.
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- 2022
14. Dubbing in Practice: A Large Scale Study of Human Localization With Insights for Automatic Dubbing
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William Brannon, Yogesh Virkar, and Brian Thompson
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Human-Computer Interaction ,FOS: Computer and information sciences ,Linguistics and Language ,Computer Science - Computation and Language ,Artificial Intelligence ,Communication ,Computation and Language (cs.CL) ,Computer Science Applications - Abstract
We investigate how humans perform the task of dubbing video content from one language into another, leveraging a novel corpus of 319.57 hours of video from 54 professionally produced titles. This is the first such large-scale study we are aware of. The results challenge a number of assumptions commonly made in both qualitative literature on human dubbing and machine-learning literature on automatic dubbing, arguing for the importance of vocal naturalness and translation quality over commonly emphasized isometric (character length) and lip-sync constraints, and for a more qualified view of the importance of isochronic (timing) constraints. We also find substantial influence of the source-side audio on human dubs through channels other than the words of the translation, pointing to the need for research on ways to preserve speech characteristics, as well as semantic transfer such as emphasis/emotion, in automatic dubbing systems., Comment: Accepted at TACL. pre-MIT Press publication version
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- 2022
- Full Text
- View/download PDF
15. A Novel Cadaveric Embalming Technique for Enhancing Visualisation of Human Anatomy
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Brian Thompson, Emily Green, Kayleigh Scotcher, and Iain D. Keenan
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- 2022
16. PhenoComb: a discovery tool to assess complex phenotypes in high-dimensional single-cell datasets
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Paulo E P Burke, Ann Strange, Emily Monk, Brian Thompson, Carol M Amato, and David M Woods
- Subjects
General Medicine - Abstract
Motivation High-dimensional cytometry assays can simultaneously measure dozens of markers, enabling the investigation of complex phenotypes. However, as manual gating relies on previous biological knowledge, few marker combinations are often assessed. This results in complex phenotypes with the potential for biological relevance being overlooked. Here, we present PhenoComb, an R package that allows agnostic exploration of phenotypes by assessing all combinations of markers. PhenoComb uses signal intensity thresholds to assign markers to discrete states (e.g. negative, low, high) and then counts the number of cells per sample from all possible marker combinations in a memory-safe manner. Time and disk space are the only constraints on the number of markers evaluated. PhenoComb also provides several approaches to perform statistical comparisons, evaluate the relevance of phenotypes and assess the independence of identified phenotypes. PhenoComb allows users to guide analysis by adjusting several function arguments, such as identifying parent populations of interest, filtering of low-frequency populations and defining a maximum complexity of phenotypes to evaluate. We have designed PhenoComb to be compatible with a local computer or server-based use. Results In testing of PhenoComb’s performance on synthetic datasets, computation on 16 markers was completed in the scale of minutes and up to 26 markers in hours. We applied PhenoComb to two publicly available datasets: an HIV flow cytometry dataset (12 markers and 421 samples) and the COVIDome CyTOF dataset (40 markers and 99 samples). In the HIV dataset, PhenoComb identified immune phenotypes associated with HIV seroconversion, including those highlighted in the original publication. In the COVID dataset, we identified several immune phenotypes with altered frequencies in infected individuals relative to healthy individuals. Collectively, PhenoComb represents a powerful discovery tool for agnostically assessing high-dimensional single-cell data. Availability and implementation The PhenoComb R package can be downloaded from https://github.com/SciOmicsLab/PhenoComb. Supplementary information Supplementary data are available at Bioinformatics Advances online.
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- 2022
17. Regulating clinical trials in a resource-limited setting during the Ebola public health emergency in Sierra Leone
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Onome T. Abiri, Abdulai J. Bah, Michael Lahai, Durodami R. Lisk, James P. Komeh, Joy Johnson, Wiltshire C. N. Johnson, Sheku S. Mansaray, Joseph Sam Kanu, James B. W. Russell, Fawzi Thomas, Murtada M. Sesay, Thomas A. Conteh, Alphan Tejan-Kella, Mohamed Sesay, Manal Ghazzawi, Brian Thompson, Sorie Conteh, and Gibrilla Fadlu Deen
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Medicine (miscellaneous) ,Humans ,Pharmacology (medical) ,Public Health ,Emergencies ,Hemorrhagic Fever, Ebola ,Epidemics ,Sierra Leone - Abstract
Clinical trials during public health emergencies of novel medical products such as therapeutics and vaccines in resource-limited settings are daunting due to the limited capacity for regulatory assessment. Regulating clinical trials during the Ebola outbreak in Sierra Leone required expedited evaluation to identify medical products that could be promptly introduced to combat the epidemic in the absence of approved treatment or prevention. This article explored the decisions taken by the Pharmacy Board of Sierra Leone through its Expert Committee on Medicine Safety and Clinical Trials regarding clinical trials oversight during the Ebola epidemic and the lessons learned. This independent expert committee assessed and provided scientific opinions to the Pharmacy Board of Sierra Leone to inform approval of all clinical trials within 10–15 working days. We also requested for assisted review from the African Vaccine Regulatory Forum and support from the US Food and Drug Administration through a unilateral recognition and reliance memorandum of understanding. In addition, the Agency-ensured structures and systems were in place for reporting and reviewing adverse events and serious adverse events, management of biological samples, submission and review of progress reports, and good clinical practice inspections. Unfortunately, the Ebola epidemic revealed many weaknesses in the country’s clinical trials regulatory structure and processes. Government and partners should further offer more resources to build the clinical trial structures and systems so that the Agency will be better poised to handle future public health emergencies.
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- 2021
18. Establishing target systolic and diastolic blood pressure in diabetic patients with hypertension: what do we need to consider?
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Brian Thompson and John W McEvoy
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Adult ,Systole ,Hypertension ,Internal Medicine ,Diabetes Mellitus ,Humans ,Blood Pressure ,General Medicine ,Cardiology and Cardiovascular Medicine ,Antihypertensive Agents - Abstract
The optimum target for systolic and diastolic blood pressure remains divisive. In particular, the conflicting outcomes of the SPRINT and ACCORD trials have led to a divergence of guideline-recommended blood pressure targets for adults with diabetes.Here, we review the existing recommendations for blood pressure targets in diabetes, discussing the evidence base behind them and their limitations. We start by outlining the risks and benefits of lower systolic blood pressure targets among diabetics. We then follow with a separate appraisal of diastolic blood pressure targets, which necessitates examination of the 'J curve' and isolated diastolic hypertension.Current and emerging evidence supports, on balance, a blood pressure therapeutic target of130/90 mmHg in adults at increased risk for cardiovascular disease, including diabetics. Whether certain diabetics with systolic BPs of 120-130 and/or diastolic BPs 80-90 mmHg require drug treatment to a target of120/80 mmHg is less clear and requires more research.
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- 2021
19. Oxidative stress induces inflammation of lens cells and triggers immune surveillance of ocular tissues
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David C. Thompson, Emily A. Davidson, David J. Orlicky, Ying Chen, Brian Thompson, and Vasilis Vasiliou
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Innate immune system ,Inflammation ,Glutathione ,medicine.disease_cause ,Cell biology ,chemistry.chemical_compound ,chemistry ,Downregulation and upregulation ,In vivo ,medicine ,Buthionine sulfoximine ,medicine.symptom ,Oxidative stress ,Ex vivo - Abstract
Recent reports have challenged the notion that the lens is immune-privileged. However, these studies have not fully identified the molecular mechanism(s) that promote immune surveillance of the lens. Using a mouse model of targeted glutathione (GSH) deficiency in ocular surface tissues, we have investigated the role of oxidative stress in upregulating cytokine expression and promoting immune surveillance of the eye. RNA-sequencing of lenses from postnatal day (P) 1- aged Gclcf/f;Le-CreTg/− (KO) and Gclcf/f;Le-Cre−/− control (CON) mice revealed upregulation of many cytokines (e.g., CCL4, GDF15, CSF1) and immune response genes in the lenses of KO mice. The eyes of KO mice had a greater number of cells in the aqueous and vitreous humors at P1, P20 and P50 than age-matched CON and Gclcw/w;Le-CreTg/− (CRE) mice. Histological analyses revealed the presence of innate immune cells (i.e., macrophages, leukocytes) in ocular structures of the KO mice. At P20, the expression of cytokines and ROS content was higher in the lenses of KO mice than in those from age-matched CRE and CON mice, suggesting that oxidative stress may induce cytokine expression. In vitro administration of the oxidant, hydrogen peroxide, and the depletion of GSH (using buthionine sulfoximine (BSO)) in 21EM15 lens epithelial cells induced cytokine expression, an effect that was prevented by co-treatment of the cells with N-acetyl-L-cysteine (NAC), a antioxidant. The in vivo and ex vivo induction of cytokine expression by oxidative stress was associated with the expression of markers of epithelial-to-mesenchymal transition (EMT), α-SMA, in lens cells. Given that EMT of lens epithelial cells causes posterior capsule opacification (PCO), we propose that oxidative stress induces cytokine expression, EMT and the development of PCO in a positive feedback loop. Collectively these data indicate that oxidative stress induces inflammation of lens cells which promotes immune surveillance of ocular structures.HighlightsImmune surveillance of ocular structures occurs in mouse eyes deficient in glutathione.Oxidative stress upregulates the expression of pro-inflammatory cytokines (e.g., GDF15, CSF1) in lens cells in vitro and in vivo.The upregulation of cytokines in lens cells is associated with markers of an epithelial-to-mesenchymal transition phenotype.Oxidative stress-induced inflammation and associated epithelial-to-mesenchymal transition may play a role in the development of posterior capsule opacification.
- Published
- 2021
20. 9. Human Rights
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter deals with the area of human rights. It first considers the former position on human rights in the UK, then the European Convention on Human Rights and its incorporation into domestic law by the Human Rights Act 1998. The chapter explores the extent to which human rights law applies to private bodies performing public functions, how it affects the interpretation of legislation, when courts may find legislation compatible with Convention rights and when they may issue a declaration of incompatibility, and examines the adoption and the application of the proportionality test.
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- 2021
21. 12. Ombudsmen
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter examines the institution of the ombudsman, its origins, the conditions of access and the jurisdiction of the parliamentary, health service and local government ombudsmen and the key ideas of maladministration and injustice. It also reviews how ombudsmen handle and resolve complaints and seek improvements by public bodies in their handling of complaints, and the learning of lessons, as well as considering the outcome of investigations and remedies recommended by the ombudsman. Finally, the chapter discusses the process developed by the ombudsmen in dealing with complainants dissatisfied with the service they have received and how the courts deal with the judicial reviews brought against ombudsmen by complainants. Note is also made of the research on judicial reviews brought against these ombudsmen.
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- 2021
22. 8. Devolution
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter focuses on devolution. The nature of the asymmetrical devolution of legislative and executive power to Scotland, Wales, and Northern Ireland is outlined, along with the position in England, with the ongoing change to these arrangements analysed. Some issues related to devolution which have been raised in the UK courts are then considered, with the chapter using a range of examples in Scotland, Wales and Northern Ireland to discuss the extent to which the devolution settlement is dynamic and continuing to change. It concludes by exploring the impact of Brexit on devolution in particular.
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- 2021
23. 3. The Rule of Law
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter discusses the constitutional principle of the rule of law. First the concept of the rule of law is introduced, including discussion and criticisms of Dicey’s understanding of the principle. The difference between formal and substantive understandings of the rule of law is explored, then the chapter examines the rule of law as a broad political doctrine requiring law to be clear and prospective. Finally, the chapter uses in depth analysis of case law to explain the idea of government according to law in the UK: it examines the need for legal authority for official acts, the principle of legality, and the rule of law as a substantive constitutional principle.
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- 2021
24. 7. Law-making
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter discusses law-making. First, it considers the different types of legislative measures, including the special arrangements introduced for law-making in preparation for Brexit. It then examines the methods of control and influence used before and during the consideration of legislation by Parliament, including analysis of the recently abandoned experiment with ‘English Votes for English Laws’. It concludes by analysing the process of judicial review of delegated legislation.
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- 2021
25. 6. Parliament: Scrutiny of Government
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter examines the operation of the UK’s parliamentary style of government, focusing on the role of Parliament in scrutinising the government. The chapter explains the crucial constitutional convention of ministerial responsibility to Parliament, using examples to demonstrate how it operates in practice. Having set out the principles, the chapter explores the practice of parliamentary scrutiny of government, including the role of select committees, debates and questions on the floor of the Commons, and the role of correspondence between MPs, their constituents, and the government. The chapter concludes by reviewing some reforms intended to re-balance power within Parliament, by strengthening the role of backbench MPs, creating a public petitions system to select topics for debate, and extending parliamentary oversight over public appointments.
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- 2021
26. 11. The Availability of Judicial Review
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter deals with the availability of judicial review and its significance in the constitution. First, it considers the claim for judicial review and the exclusivity principle. It determines who can apply for judicial review and against whom and in respect of what activities judicial review may be sought. Next, it examines the discretionary nature of the remedies available in judicial review proceedings, including how the courts exercise this discretion. The chapter concludes with an examination of the courts’ response to legislative attempts to exclude or oust judicial review.
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- 2021
27. 1. Constitutional Law in the United Kingdom
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter introduces the idea of a constitution, analyses its various definitions and characteristics, and explores the specific nature of the UK’s constitutional arrangements. It then examines the key concepts of legitimacy, democracy, legal and political constitutionalism, the conditioning of power (via the principles of the separation of powers and responsible government), and the state.
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- 2021
28. Cases and Materials on Constitutional and Administrative Law
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Brian Thompson, Michael Gordon, and Adam Tucker
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Cases & Materials on Constitutional and Administrative Law is an invaluable resource. Extracts have been chosen from a wide range of historical and contemporary cases and materials to illustrate the reasoning processes of the courts and to show how legal principles are developed. The extracts from the leading cases in the field are combined with legal, political, and philosophical materials and linked together with explanatory text, alongside extensive notes and questions for discussion. The book takes a critical look at the main doctrines of constitutional law as well as the principles of administrative law, examining the operation of the constitution in relation to Parliament, the government, and the citizen. Incisive commentary throughout the text provides explanation and analysis of the key issues and challenges in constitutional and administrative law. The thirteenth edition has been fully revised and updated to reflect the latest developments in legislation, case law, and politics, including the process and implications of exiting the EU, and the UK’s new post-Brexit legal arrangements; continuing change and challenges to the devolution settlement in Scotland, Wales and Northern Ireland; major Supreme Court decisions in Miller (No.2) / Cherry, UNISON, the Scottish Continuity Bill Reference, and Privacy International; new developments in relation to ministerial responsibility and parliamentary accountability (including the impact of the coronavirus pandemic); proposed repeal of the Fixed-term Parliaments Act 2011; and discussion of proposals for reforms of judicial review and tribunal appeal processes, as well as proposed reform of ombudsmen. This text continues to provide instant access to an unrivalled collection of up-to-date judgments, statutory provisions, official publications, and other policy materials.
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- 2021
29. 2. The Legislative Sovereignty of Parliament
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter deals with the doctrine of the legislative sovereignty of Parliament. First, the nature of parliamentary sovereignty is considered. Next, the question of whether Parliament can limit the powers of its successors is explored, addressing possible substantive and procedural limits on legislative sovereignty. The chapter then assesses a range of modern challenges to parliamentary sovereignty: those posed by membership of and exit from the EU (including the process and impact of Brexit), human rights, the decision of the House of Lords in Jackson, common law rights and principles, and referendums.
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- 2021
30. 13. Statutory Tribunals
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter examines the rationale for giving the task of resolving disputes to statutory tribunals rather than courts. It also describes the structure and organization for most tribunals and how they conduct dispute resolution adjudication. The hearing technique of redress is considered alongside administrative review, particularly the use of mandatory reconsideration in social security to illustrate the advantages and disadvantages of different methods of dispute resolution. Their place in a staged approach, proportionate dispute resolution, is outlined and the possible benefit of conceiving administrative justice as a system with a focus on users is raised as well as some of the issues raised for users by the adoption of digitalization. An outline is given of the oversight activities conducted by the non-statutory Administrative Justice Council.
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- 2021
31. 4. Judicial Independence
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter examines the notion of judicial independence. It discusses the Constitutional Reform Act 2005 and its provisions reforming the office of the Lord Chancellor, establishing a new Supreme Court, and restructuring judicial appointments. Judicial diversity and discipline, along with further change to the judicial appointments process, are also considered. The chapter also considers the accountability of the judiciary to Parliament and the public, and the relationship between judicial independence and parliamentary privilege.
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- 2021
32. 5. The Royal Prerogative and Constitutional Conventions
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter reviews the royal prerogative and constitutional conventions, and the relationship between these two sources of constitutional rules. The first section identifies the various types of prerogative power and explores recent examples where these such powers have been placed on a statutory basis, as well as proposals to reverse this process, such as by repealing the Fixed-term Parliaments Act 2011 and reviving the royal prerogative. It also examines attempts to codify constitutional practice, including the Crown’s personal prerogative of the appointment of the Prime Minister in the Cabinet Manual, and the interaction between prerogative and statute in the courts. The second section of the chapter explores constitutional conventions as a source of the constitution, their relationship with law, and their nature as rules of political behaviour. It considers the treatment of conventions in the courts, whether they can obtain legal force, and the feasibility and desirability of codifying conventions. The important connections between the royal prerogative and constitutional conventions are analysed at various points throughout the chapter.
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- 2021
33. 10. Judicial Review: The Grounds
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Brian Thompson, Michael Gordon, and Adam Tucker
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This chapter introduces the nature and constitutional role of judicial review. It then examines the various grounds of review, which have been placed in three classes: illegality, procedural impropriety, and irrationality. The chapter also discusses the substantive aspect of legitimate expectations and the relationship between irrationality and proportionality in pure domestic law.
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- 2021
34. Rate and risk factors of metabolic components and component combinations according to hypertension status in Tibetans in a cross-sectional study
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Jihong, Hu, Brian, Thompson, Shuxia, Wang, Minhao, Guo, Chunjuan, Yan, Fengfeng, Ding, Peng, Guo, Li, Chen, Zhuoma, Cao, and Jianzong, Wang
- Subjects
Metabolic Syndrome ,Cross-Sectional Studies ,Risk Factors ,Obesity, Abdominal ,Hyperglycemia ,Hypertension ,Prevalence ,Humans ,Female ,Obesity ,General Medicine ,Tibet ,Body Mass Index - Abstract
To estimate the prevalence of metabolic syndrome (MS) and metabolic components and their associated factors and component combinations according to hypertension status in Tibetans living at high altitude. Multistage sampling of 1473 participants (799 hypertensive patients and 674 normotensive subjects). MS prevalence and the number of metabolic components ≥ 3 were significantly higher in the hypertensive than normotensives. In hypertensive patients, the most common component was central obesity and it combined with: high blood pressure, in those with 2 risk factors, plus fasting hyperglycemia, in those with 3 risk factors, and high triglyceride, in those with 4 risk factors. In normotensive subjects, the most common single component was low high-density-lipoprotein cholesterol, and most component combination included central obesity and hyperglycemia in those with 2 risk factors, plus high blood pressure in those with 3 risk factors, and high triglycerides in those with 4 risk factors. Body mass index and female both were associated with increased possibilities of MS in hypertensive and normotensive participants. Low incoming, and high educational levels were associated with an elevated probability of MS in normotensive Tibetans also. The priority of prevention from cardiovascular diseases by targeting metabolic components in the hypertensive was different from normotensives. Different MS components had various lifestyle and socioeconomic factors.
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- 2022
35. GSI Treatment Preserves Protein Synthesis in C2C12 Myotubes
- Author
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Charlotte McMullen, Joseph S. Marino, Joshua R. Huot, Brian Thompson, and Susan T Arthur
- Subjects
0301 basic medicine ,Anabolism ,QH301-705.5 ,Muscle Fibers, Skeletal ,Notch signaling pathway ,Muscle Proteins ,Protein expression ,Article ,Myoblasts ,GSI ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Protein biosynthesis ,Animals ,Biology (General) ,Muscle, Skeletal ,Protein kinase B ,PI3K/AKT/mTOR pathway ,Protein Synthesis Inhibitors ,Myogenesis ,Chemistry ,AKT ,Cell Differentiation ,General Medicine ,Cell biology ,030104 developmental biology ,030220 oncology & carcinogenesis ,Protein Biosynthesis ,mTOR ,Amyloid Precursor Protein Secretases ,C2C12 ,muscle protein synthesis ,Signal Transduction - Abstract
It has been demonstrated that inhibiting Notch signaling through γ-secretase inhibitor (GSI) treatment increases myogenesis, AKT/mTOR signaling, and muscle protein synthesis (MPS) in C2C12 myotubes. The purpose of this study was to determine if GSI-mediated effects on myogenesis and MPS are dependent on AKT/mTOR signaling. C2C12 cells were assessed for indices of myotube formation, anabolic signaling, and MPS following GSI treatment in combination with rapamycin and API-1, inhibitors of mTOR and AKT, respectively. GSI treatment increased several indices of myotube fusion and MPS in C2C12 myotubes. GSI-mediated effects on myotube formation and fusion were completely negated by treatment with rapamycin and API-1. Meanwhile, GSI treatment was able to rescue MPS in C2C12 myotubes exposed to rapamycin or rapamycin combined with API-1. Examination of protein expression revealed that GSI treatment was able to rescue pGSK3β Ser9 despite AKT inhibition by API-1. These findings demonstrate that GSI treatment is able to rescue MPS independent of AKT/mTOR signaling, possibly via GSK3β modulation.
- Published
- 2021
36. FTIR Characterization of Precipitates to Inform Cleaning Product Formulation Decisions
- Author
-
Maria Emilia Perdomo, Claire Dentinger, and Brian Thompson
- Subjects
Materials science ,Chemical engineering ,Fourier transform infrared spectroscopy ,Cleaning product ,Characterization (materials science) - Published
- 2021
37. Dynamic Tunability of Sensitivity of Graphene based Surface Plasmon Resonance Sensor
- Author
-
D. Brian Thompson, Jeremy L. Reid, Ravi P. Gollapalli, Tingyi Wei, Cameron K. Gren, and Derrick Vickery
- Subjects
Surface plasmon resonance sensor ,Materials science ,Graphene ,law ,business.industry ,Optoelectronics ,Sensitivity (control systems) ,business ,law.invention - Abstract
The effect of electrical bias across the SPR sensor surface to dynamically tune its refractive index is investigated. This technique provides a dynamic sensor surface and a handle to enhance and tune the sensor sensitivity.
- Published
- 2021
38. Oxidative stress induces inflammation of lens cells and triggers immune surveillance of ocular tissues
- Author
-
Brian Thompson, Emily A. Davidson, Ying Chen, David J. Orlicky, David C. Thompson, and Vasilis Vasiliou
- Subjects
Mice, Knockout ,Epithelial-Mesenchymal Transition ,Glutamate-Cysteine Ligase ,Down-Regulation ,Epithelial Cells ,General Medicine ,Eye ,Toxicology ,Article ,Immunity, Innate ,Acetylcysteine ,Cell Line ,Up-Regulation ,Mice, Inbred C57BL ,Mice ,Oxidative Stress ,Lens, Crystalline ,Leukocytes ,Animals ,Cytokines ,Chemokine CCL7 ,Reactive Oxygen Species ,Buthionine Sulfoximine - Abstract
Recent reports have challenged the notion that the lens is immune-privileged. However, these studies have not fully identified the molecular mechanism(s) that promote immune surveillance of the lens. Using a mouse model of targeted glutathione (GSH) deficiency in ocular surface tissues, we have investigated the role of oxidative stress in upregulating cytokine expression and promoting immune surveillance of the eye. RNA-sequencing of lenses from postnatal day (P) 1-aged Gclc(f/f);Le-Cre(Tg/-) (KO) and Gclc(f/f);Le-Cre(−/−) control (CON) mice revealed upregulation of many cytokines (e.g., CCL4, GDF15, CSF1) and immune response genes in the lenses of KO mice. The eyes of KO mice had a greater number of cells in the aqueous and vitreous humors at P1, P20 and P50 than age-matched CON and Gclc(w/w);Le-Cre(Tg/-) (CRE) mice. Histological analyses revealed the presence of innate immune cells (i.e., macrophages, leukocytes) in ocular structures of the KO mice. At P20, the expression of cytokines and ROS content was higher in the lenses of KO mice than in those from age-matched CRE and CON mice, suggesting that oxidative stress may induce cytokine expression. In vitro administration of the oxidant, hydrogen peroxide, and the depletion of GSH (using buthionine sulfoximine (BSO)) in 21EM15 lens epithelial cells induced cytokine expression, an effect that was prevented by co-treatment of the cells with N-acetyl-L-cysteine (NAC), a antioxidant. The in vivo and ex vivo induction of cytokine expression by oxidative stress was associated with the expression of markers of epithelial-to-mesenchymal transition (EMT), α-SMA, in lens cells. Given that EMT of lens epithelial cells causes posterior capsule opacification (PCO), we propose that oxidative stress induces cytokine expression, EMT and the development of PCO in a positive feedback loop. Collectively these data indicate that oxidative stress induces inflammation of lens cells which promotes immune surveillance of ocular structures.
- Published
- 2022
39. Exploring the Dynamic Interactions and Cognitive Characteristics of NSF Innovation Corps (I-Corps) Teams
- Author
-
Kathryn Jablokow, Neeraj Sonalkar, Ilya Avdeev, Brian Thompson, Mohamed Megahed, and Pratik Pachpute
- Published
- 2020
40. Humanitarian Design Projects: Helping Children With Cerebral Palsy
- Author
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Craig Somerton, Brian Thompson, and Alan Haddow
- Published
- 2020
41. Community Outreach For Capstone Design: The Cycle Projects
- Author
-
Brian Thompson and Craig Somerton
- Published
- 2020
42. The Role Of The Faculty Advisor In The Capstone Design Experience: The Importance Of Technical Expertise
- Author
-
Brian Thompson, Craig Gunn, and Craig Somerton
- Published
- 2020
43. The Threat of Antibiotic Resistance in Changing Climate
- Author
-
Aliyar Fouladkhah, Brian Thompson, and Janey Smith Camp
- Subjects
0301 basic medicine ,Microbiology (medical) ,business.industry ,030106 microbiology ,Biology ,Microbiology ,Biotechnology ,03 medical and health sciences ,n/a ,030104 developmental biology ,Antibiotic resistance ,Editorial ,lcsh:Biology (General) ,Virology ,business ,lcsh:QH301-705.5 - Abstract
As the earliest form of life, microorganisms have elaborate mechanisms for adapting to changes in environmental conditions [...]
- Published
- 2020
44. A Predictive, Interactive, and Computational Methodology for Multiple-Criteria Decision-Making, with Application to Stimulating Biomedical Innovation
- Author
-
Leslie Platt, Brian Thompson, Kevin Gormley, and Ken Hoffman
- Subjects
Computer science ,Management science ,Multiple criteria - Published
- 2020
45. Exploiting Sentence Order in Document Alignment
- Author
-
Brian Thompson and Philipp Koehn
- Subjects
FOS: Computer and information sciences ,050101 languages & linguistics ,Computer Science - Computation and Language ,Computer science ,business.industry ,05 social sciences ,02 engineering and technology ,computer.software_genre ,Task (project management) ,Reduction (complexity) ,Order (business) ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,0501 psychology and cognitive sciences ,Artificial intelligence ,business ,Computation and Language (cs.CL) ,computer ,Natural language processing ,Sentence - Abstract
We present a simple document alignment method that incorporates sentence order information in both candidate generation and candidate re-scoring. Our method results in 61% relative reduction in error compared to the best previously published result on the WMT16 document alignment shared task. Our method improves downstream MT performance on web-scraped Sinhala--English documents from ParaCrawl, outperforming the document alignment method used in the most recent ParaCrawl release. It also outperforms a comparable corpora method which uses the same multilingual embeddings, demonstrating that exploiting sentence order is beneficial even if the end goal is sentence-level bitext., EMNLP2020
- Published
- 2020
46. The Challenges of Independence, Accountability and Governance in the Ombudsman Sector
- Author
-
Brian Thompson
- Subjects
Officer ,Parliament ,media_common.quotation_subject ,Corporate governance ,Political science ,Accountability ,Public service ,Chief audit executive ,Legislature ,Public administration ,Independence ,media_common - Abstract
This chapter explores the continuing challenge of holding to account an institution, the proposed Public Service Ombudsman (PSO), which is itself a mechanism of accountability, while ensuring its independence is not impaired. The model of Officers of Parliament, as developed in the UK and New Zealand, is used as the template for an examination of the provisions in the draft Public Service Ombudsman Bill. While these provisions draw heavily on the first official to be considered an Officer of Parliament, the Comptroller and Auditor General, there are variations relating to the arrangements for appointment and corporate governance. As well as suggesting specific changes to the draft legislative provisions, the conclusions recommend a wider debate on both (a) Officers of Parliament as a distinct unit of our constitutional watchdogs and (b) best practice in corporate governance in the ombudsman sector.
- Published
- 2020
47. Analysis of a Multi-Well Eagle Ford Pilot
- Author
-
Baishali Roy, Aaron L. Janssen, Kevin T. Raterman, Brian Thompson, Kyle Friehauf, and Yongshe Liu
- Subjects
Eagle ,biology ,biology.animal ,Archaeology ,Geology - Published
- 2020
48. SEXTANT: A Computational Framework for Scalable and Efficient Correlation of Spatio-Temporal Trajectories
- Author
-
Alex Cheung, Brian Thompson, Dave Cedel, Jeremy Martin, and Kristen Snee
- Subjects
0106 biological sciences ,Computer science ,020206 networking & telecommunications ,02 engineering and technology ,computer.software_genre ,Data structure ,010603 evolutionary biology ,01 natural sciences ,Sextant (astronomical) ,Illegal fishing ,law.invention ,Task (project management) ,Correlation ,law ,Scalability ,0202 electrical engineering, electronic engineering, information engineering ,Data mining ,Scale (map) ,computer - Abstract
Discovering pairs of related entities based on their spatio-temporal behavior has applications of scientific, commercial, and public interest. For example, inferring relationships between animals based on data collected from tracking devices can help biologists better understand group behavior and family structures; identifying commonalities in customer behavior can enable better targeted marketing; and discovering correlations in the movement patterns of maritime vessels can help crack down on illegal fishing or smuggling activity. However, this task becomes especially challenging when many entities are being observed simultaneously and when observations of different entities are made asynchronously and at different frequencies.We propose SEXTANT, a computational framework for performing spatio-temporal correlation at scale, implemented using efficient data structures over a distributed architecture. SEXTANT’s core capability consists of algorithms that, given a large set of time-stamped and geo-located observations, identify pairs of trajectories with high spatial proximity over time, demonstrating shared pattern-of-life behavior. Experiments on real-world and synthetic datasets demonstrate SEXTANT’s ability to efficiently capture correlated behavior at scale while being robust to asynchronicity, sparsity, and heterogeneity in the data, out-performing existing methods.
- Published
- 2019
49. Cyclic ablation of high-emissivity Sm-doped ZrB2/SiC coatings on alumina substrates
- Author
-
Xin Li Phuah, Angel A. Peña, Brian Thompson, Rodney W. Trice, Christopher Petorak, and Anneliese E. Brenner
- Subjects
010302 applied physics ,Zirconium diboride ,Materials science ,Dopant ,Doping ,chemistry.chemical_element ,02 engineering and technology ,Substrate (electronics) ,021001 nanoscience & nanotechnology ,Microstructure ,01 natural sciences ,Samarium ,chemistry.chemical_compound ,chemistry ,0103 physical sciences ,Materials Chemistry ,Ceramics and Composites ,Composite material ,0210 nano-technology ,Thermal spraying ,Eutectic system - Abstract
Samarium-doped ZrB2/SiC (ZBS) coatings possess properties of high emissivity and excellent ablation performance suitable for hypersonic applications. Of interest in the current study is how cyclic ablation affects the scale development on alumina substrates. ZBS coatings with 3, 5 and 8 mol% of samarium (Sm) dopant were prepared via shrouded plasma spray onto alumina substrates and subjected to two 60-s ablation cycles with temperatures reaching up to 1700 °C. Blisters were observed on the Sm-doped coatings after the 1st cycle as a result of a local eutectic reaction between the ablation products and alumina substrate. A Sm-stabilized t-ZrO2 phase was identified through X-ray diffraction after the ablation of the Sm-doped coatings. The ZBS with 5 mol% of Sm dopant produced a flower-like microstructure after the 2nd cycle due to the formation of convection cells.
- Published
- 2018
50. Influence of Sustained Beta-Alanine Supplementation on Body Composition and Physical Performance in College-aged Males Seeking Military Commission
- Author
-
Brian Thompson, Jason M. Cholewa, Alexander Bedard, Samuel Headley, Tracey D. Matthews, Daniel Jaffe, and Jennifer Hewit
- Subjects
Vertical jump ,Animal science ,business.industry ,Lactate threshold ,Medicine ,VO2 max ,Squat ,business ,human activities ,Respiratory exchange ratio ,Cardiovascular fitness ,Body fat percentage ,Bench press - Abstract
The present study was designed to investigate the effects of chronic ingestion of a proprietary beta-alanine supplement on body composition, indices of strength and power performance, and markers of cardiovascular endurance in physically active, college-aged males commissioning within the armed services. Subjects (n = 30) participated in four separate testing sessions, both pre and post assessment consuming either 6.0 g/day beta-alanine or Placebo supplementation for 6 weeks. Parameters evaluated included body fat percentage (BF%), fat free mass (FFM), vertical jump (VJ), 1 repetition maximum back squat (SQ) and bench press (BP), and a repetition maximum bench press (RMBP) at 75% of the attained maximum, maximal oxygen consumption (VO2peak), respiratory exchange ratio (RER), lactate threshold (LT), and peak lactate concentration. For all variables, no significant interactions existed across condition and time (p > .05). In addition, for all variables, no significant differences existed between conditions (p > .05). Beta-alanine did not show any benefit for improving body composition or physical performance parameters in this group of individuals.
- Published
- 2018
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