27 results on '"Beatrix Horvath"'
Search Results
2. ErbB-3 BINDING PROTEIN 1 Regulates Translation and Counteracts RETINOBLASTOMA RELATED to Maintain the Root Meristem
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Ben Scheres, Aladár Pettkó-Szandtner, Beatrix Horvath, Albrecht G. von Arnim, Csaba Papdi, Zoltán Magyar, László Bögre, Ansul Lokdarshi, and Stefan Dorokhov
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0106 biological sciences ,Sucrose ,Physiology ,Recombinant Fusion Proteins ,Meristem ,Arabidopsis ,Ribosome biogenesis ,Plant Science ,Plant Roots ,01 natural sciences ,Ribosome ,Chromatography, Affinity ,Mass Spectrometry ,Phosphatidylinositol 3-Kinases ,Genetics ,Protein biosynthesis ,Kinase activity ,Research Articles ,Adaptor Proteins, Signal Transducing ,biology ,Arabidopsis Proteins ,Chemistry ,Binding protein ,Nuclear Proteins ,RNA-Binding Proteins ,Signal transducing adaptor protein ,Cell Differentiation ,Translation (biology) ,biology.organism_classification ,Cell biology ,RNA, Ribosomal ,Protein Biosynthesis ,Ribosomes ,Protein Binding ,Transcription Factors ,010606 plant biology & botany - Abstract
The ErbB-3 BINDING PROTEIN 1 (EBP1) drives growth, but the mechanism of how it acts in plants is little understood. Here, we show that EBP1 expression and protein abundance in Arabidopsis (Arabidopsis thaliana) are predominantly confined to meristematic cells and are induced by sucrose and partially dependent on TARGET OF RAPAMYCIN (TOR) kinase activity. Consistent with being downstream of TOR, silencing of EBP1 restrains, while overexpression promotes, root growth, mostly under sucrose-limiting conditions. Inducible overexpression of RETINOBLASTOMA RELATED (RBR), a sugar-dependent transcriptional repressor of cell proliferation, depletes meristematic activity and causes precocious differentiation, which is attenuated by EBP1. To understand the molecular mechanism, we searched for EBP1- and RBR-interacting proteins by affinity purification and mass spectrometry. In line with the double-stranded RNA-binding activity of EBP1 in human (Homo sapiens) cells, the overwhelming majority of EBP1 interactors are part of ribonucleoprotein complexes regulating many aspects of protein synthesis, including ribosome biogenesis and mRNA translation. We confirmed that EBP1 associates with ribosomes and that EBP1 silencing hinders ribosomal RNA processing. We revealed that RBR also interacts with a set of EBP1-associated nucleolar proteins as well as factors that function in protein translation. This suggests EBP1 and RBR act antagonistically on common processes that determine the capacity for translation to tune meristematic activity in relation to available resources.
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- 2019
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3. Whole Exome Sequencing in a Series of Patients with a Clinical Diagnosis of Tuberous Sclerosis Not Confirmed by Targeted
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Erzsebet, Kovesdi, Reka, Ripszam, Etelka, Postyeni, Emese Beatrix, Horvath, Anna, Kelemen, Beata, Fabos, Viktor, Farkas, Kinga, Hadzsiev, Katalin, Sumegi, Lili, Magyari, Pilar Guatibonza, Moreno, Peter, Bauer, and Bela, Melegh
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Adult ,Male ,Heterozygote ,Hungary ,Adolescent ,DNA Mutational Analysis ,tuberous sclerosis complex ,no mutation identified ,Validation Studies as Topic ,Tuberous Sclerosis Complex 1 Protein ,Article ,Whole Exome Sequencing ,Cohort Studies ,Codon, Nonsense ,Tuberous Sclerosis ,Tuberous Sclerosis Complex 2 Protein ,Exome Sequencing ,Humans ,Female ,Genetic Testing ,Child - Abstract
Background: Approximately fifteen percent of patients with tuberous sclerosis complex (TSC) phenotype do not have any genetic disease-causing mutations which could be responsible for the development of TSC. The lack of a proper diagnosis significantly affects the quality of life for these patients and their families. Methods: The aim of our study was to use Whole Exome Sequencing (WES) in order to identify the genes responsible for the phenotype of nine patients with clinical signs of TSC, but without confirmed tuberous sclerosis complex 1/ tuberous sclerosis complex 2 (TSC1/TSC2) mutations using routine molecular genetic diagnostic tools. Results: We found previously overlooked heterozygous nonsense mutations in TSC1, and a heterozygous intronic variant in TSC2. In one patient, two heterozygous missense variants were found in polycystic kidney and hepatic disease 1 (PKHD1), confirming polycystic kidney disease type 4. A heterozygous missense mutation in solute carrier family 12 member 5 (SLC12A5) was found in one patient, which is linked to cause susceptibility to idiopathic generalized epilepsy type 14. Heterozygous nonsense variant ring finger protein 213 (RNF213) was identified in one patient, which is associated with susceptibility to Moyamoya disease type 2. In the remaining three patients WES could not reveal any variants clinically relevant to the described phenotypes. Conclusion: Patients without appropriate diagnosis due to the lack of sensitivity of the currently used routine diagnostic methods can significantly profit from the wider application of next generation sequencing technologies in order to identify genes and variants responsible for their symptoms.
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- 2021
4. The Medicago truncatula Vacuolar Iron Transporter-Like proteins VTL4 and VTL8 deliver iron to endosymbiotic bacteria at different stages of the infection process
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Péter Kaló, Ágota Domonkos, Beatrix Horvath, Ella M. Brear, Janneke Balk, Jennifer H. Walton, Robert T. Green, Marina Franceschetti, and Gyöngyi Kontra-Kováts
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Complementation ,Root nodule ,Symbiosome ,biology ,Lotus japonicus ,Mutant ,food and beverages ,Rhizobium ,biology.organism_classification ,Medicago truncatula ,Rhizobia ,Cell biology - Abstract
SummaryThe symbiotic relationship between legumes and rhizobium bacteria in root nodules has a high demand for iron. The host plant is known to provide iron to developing bacteroids, but questions remain regarding which transporters are involved. Here, we characterize two Vacuolar Iron Transporter-Like (VTL) proteins in Medicago truncatula that are specifically expressed during nodule development. VTL4 is mostly expressed during early infection and the protein was localized to membranes and the infection thread. vtl4 mutants were delayed in nodule development. VTL8 is closely related to SEN1 in Lotus japonicus and expressed in the late stages of bacteroid differentiation. The VTL8 protein was localized to the symbiosome membrane. A mutant line lacking the tandemly-arranged VTL4 – VTL8 genes, named 13U, was unable to develop functional nodules and failed to fix nitrogen, which was restored by expression of VTL8 alone. Using a newly developed lux reporter to monitor iron status of the bacteroids, a slight decrease in luminescence was observed in vtl4 mutants and a strong decrease in the 13U mutant. Iron transport capability of VTL4 and VTL8 was shown by yeast complementation. Taken together, these data indicate that VTL-type transporters are the main route for delivering iron to symbiotic rhizobia.
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- 2019
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5. Functional conservation of CYCLOPS in crack entry legume Arachis hypogaea
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Péter Kaló, Maitrayee DasGupta, Beatrix Horvath, Anindya Kundu, and Debapriya Rajlakshmi Das
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0106 biological sciences ,0301 basic medicine ,Root nodule ,Arachis ,Plant Science ,01 natural sciences ,Plant Root Nodulation ,Plant Roots ,Rhizobia ,03 medical and health sciences ,Symbiosis ,Gene Expression Regulation, Plant ,Nitrogen Fixation ,Genetics ,Plant Proteins ,Medicago ,biology ,Hypogaea ,food and beverages ,General Medicine ,biology.organism_classification ,Medicago truncatula ,Cell biology ,Arachis hypogaea ,030104 developmental biology ,Ectopic expression ,Root Nodules, Plant ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
Root nodule symbiosis in legumes is established following interaction of compatible rhizobia that activates an array of genes, commonly known as symbiotic-pathway, resulting in nodule development. In model legumes, bacterial entry mainly occurs through infection thread involving the expression of transcription factor CYCLOPS/IPD3. Here we show the functional analysis of AhCYCLOPS in Arachis hypogaea where bacteria invade roots through epidermal cracks. Exploiting significant cross-species domain conservation, trans-complementation experiments involving ectopic expression of AhCYCLOPS in transgenic hairy-roots of Medicago truncatula ipd3 mutants resulted in functional complementation of Medicago nodules. Moreover, native promoter of AhCYCLOPS was sufficient for this cross-species complementation irrespective of the different modes of infection of roots by rhizobia and nodule ontology. To unravel the role of AhCYCLOPS during 'crack-entry' nodulation in A. hypogaea, RNAi of AhCYCLOPS was performed which resulted in delayed nodule inception followed by drastic reduction in nodule number on transgenic hairy-roots. The infection zone of a significant number of RNAi nodules showed presence of infected cells with enlarged nucleus and rod shaped undifferentiated bacteria. Expression analysis showed downregulation of several nodulation responsible effectors endorsing the compromised condition of RNAi roots. Together, the results indicated that AhCYCLOPS plays an important role in A. hypogaea nodule development.
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- 2018
6. MAIN-LIKE1 is a crucial factor for correct cell division and differentiation inArabidopsis thaliana
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Norbert Sauer, Beatrix Horvath, Ruth Stadler, Christine Ühlken, and Magdalena Weingartner
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0106 biological sciences ,Cell division ,Recombinant Fusion Proteins ,Cellular differentiation ,Meristem ,Mutant ,Arabidopsis ,Gene Expression ,Plant Science ,Cell fate determination ,Plant Roots ,01 natural sciences ,03 medical and health sciences ,Gene Expression Regulation, Plant ,Genes, Reporter ,Genetics ,Arabidopsis thaliana ,Nuclear protein ,030304 developmental biology ,0303 health sciences ,biology ,Arabidopsis Proteins ,Nuclear Proteins ,Cell Differentiation ,Cell Biology ,Plants, Genetically Modified ,biology.organism_classification ,Cell biology ,Chromatin ,Phenotype ,Seedlings ,Mutation ,Cell Division ,Plant Shoots ,010606 plant biology & botany - Abstract
Summary Plant development requires accurate coordination of gene expression, both in actively dividing meristematic cells and differentiated cells. Cell fate establishment and maintenance, among others, are mediated by chromatin organization complexes that determine the stable transcriptional states of specific cell types. Here, we focus on MAIN-LIKE1 (MAIL1), one of three homologs of MAINTENANCE OF MERISTEMS (MAIN), which form a plant-specific gene family in Arabidopsis thaliana. We show that MAIL1 encodes a ubiquitously expressed nuclear protein. A mail1 loss-of-function mutant developed short primary roots, in which the meristematic cells accumulated DNA double-strand breaks and underwent massive cell death. In addition, mail1 mutant showed also cell differentiation defects in root and shoot tissues, and developed disorganized callus-like structures. The genetic interaction between main and mail1 mutants suggests that they act in the same pathway, and that both are essential for maintaining correct cell division acitivity in meristematic cells, while MAIL1 has an additional function in differentiating cells.
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- 2014
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7. ArabidopsisE2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes
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Ben Scheres, László Bögre, Lieven De Veylder, Beatrix Horvath, Binish Mohammed, Safina Khan, László Bakó, Zoltán Magyar, and Rossana Henriques
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General Immunology and Microbiology ,biology ,General Neuroscience ,Cellular differentiation ,Repressor ,Meristem ,General Biochemistry, Genetics and Molecular Biology ,Chromatin ,Cell biology ,Cyclin-dependent kinase ,biology.protein ,E2F ,Molecular Biology ,Chromatin immunoprecipitation ,Transcription factor - Abstract
Post-embryonic growth in plants depends on the continuous supply of undifferentiated cells within meristems. Proliferating cells maintain their competence for division by active repression of differentiation and the associated endocycle entry. We show by upregulation and downregulation of E2FA that it is required for maintaining proliferation, as well as for endocycle entry. While E2FB-RBR1 (retinoblastoma-related protein 1) complexes are reduced after sucrose addition or at elevated CYCD3;1 levels, E2FA maintains a stable complex with RBR1 in proliferating cells. Chromatin immunoprecipitation shows that RBR1 binds in the proximity of E2F promoter elements in CCS52A1 and CSS52A2 genes, central regulators for the switch from proliferation to endocycles. Overexpression of a truncated E2FA mutant (E2FA(ΔRB)) lacking the RBR1-binding domain interferes with RBR1 recruitment to promoters through E2FA, leading to decreased meristem size in roots, premature cell expansion and hyperactivated endocycle in leaves. E2F target genes, including CCS52A1 and CCS52A2, are upregulated in E2FA(ΔRB) and e2fa knockout lines. These data suggest that E2FA in complex with RBR1 forms a repressor complex in proliferating cells to inhibit premature differentiation and endocycle entry. Thus, E2FA regulates organ growth via two distinct, sequentially operating pathways.
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- 2012
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8. Medicago truncatula IPD3 Is a Member of the Common Symbiotic Signaling Pathway Required for Rhizobial and Mycorrhizal Symbioses
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Pascal Ratet, Beatrix Horvath, Ágota Domonkos, Péter Kaló, Kirankumar S. Mysore, Sibylle Hirsch, Gabor Halasz, Enrico Gobbato, Jean-Michel Ané, Li Huey Yeun, Jongho Sun, Million Tadege, Krisztina Miró, Giles E. D. Oldroyd, and Ferhan Ayaydin
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Hypha ,Physiology ,Mutant ,Genes, Plant ,Real-Time Polymerase Chain Reaction ,Symbiosis ,Mycorrhizae ,Nitrogen Fixation ,Two-Hybrid System Techniques ,Medicago truncatula ,Botany ,Cloning, Molecular ,Gene ,Alleles ,Genetics ,biology ,Gene Expression Profiling ,Genetic Complementation Test ,fungi ,General Medicine ,biology.organism_classification ,Gene expression profiling ,Agronomy and Crop Science ,Bacteria ,Function (biology) ,Rhizobium ,Signal Transduction - Abstract
Legumes form endosymbiotic associations with nitrogen-fixing bacteria and arbuscular mycorrhizal (AM) fungi which facilitate nutrient uptake. Both symbiotic interactions require a molecular signal exchange between the plant and the symbiont, and this involves a conserved symbiosis (Sym) signaling pathway. In order to identify plant genes required for intracellular accommodation of nitrogen-fixing bacteria and AM fungi, we characterized Medicago truncatula symbiotic mutants defective for rhizobial infection of nodule cells and colonization of root cells by AM hyphae. Here, we describe mutants impaired in the interacting protein of DMI3 (IPD3) gene, which has been identified earlier as an interacting partner of the calcium/calmodulin-dependent protein, a member of the Sym pathway. The ipd3 mutants are impaired in both rhizobial and mycorrhizal colonization and we show that IPD3 is necessary for appropriate Nod-factor-induced gene expression. This indicates that IPD3 is a member of the common Sym pathway. We observed differences in the severity of ipd3 mutants that appear to be the result of the genetic background. This supports the hypothesis that IPD3 function is partially redundant and, thus, additional genetic components must exist that have analogous functions to IPD3. This explains why mutations in an essential component of the Sym pathway have defects at late stages of the symbiotic interactions.
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- 2011
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9. Identification ofMedicago truncatulaGenes Required for Rhizobial Invasion and Bacteroid Differentiation
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Beatrix Horvath, Ágota Domonkos, Ferhan Ayaydin, and Péter Kaló
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Symbiosis ,biology ,Botany ,Identification (biology) ,biology.organism_classification ,Gene ,Medicago truncatula - Published
- 2015
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10. Analysis of genes differentially expressed during potato tuber life cycle and isolation of their promoter regions
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Richard G. F. Visser, Ralph van Berloo, Luisa M. Trindade, and Beatrix Horvath
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solanum-tuberosum ,Plant Science ,Biology ,dna-binding ,Microbiology ,chemistry.chemical_compound ,Laboratorium voor Plantenveredeling ,Microbiologie ,transcript levels ,Auxin ,transgenic potato ,Gene expression ,Genetics ,Enhancer ,Gene ,Abscisic acid ,chemistry.chemical_classification ,5'-untranslated region ,plants ,EPS-4 ,fungi ,food and beverages ,Promoter ,abscisic-acid ,gus gene ,General Medicine ,Plant Breeding ,chemistry ,Dormancy ,Gibberellin ,regulatory elements ,tissue-specific expression ,Agronomy and Crop Science - Abstract
The potato tuber life cycle involves several developmental stages including tuberisation, tuber growth, dormancy and sprouting. Gene expression during the potato tuber life cycle has been monitored using a RNA fingerprinting technique termed cDNA-AFLP The expression profile of the nearly 2000 transcript derived fragments (TDFs) was analysed and general conclusions concerning the different stages of tuber life cycle and tissue specificity were drawn. Comparison of 116 TDFs isolated and sequenced to the NCBI databases indicated that most of the genes expressed during tuber life cycle are involved in defence, stress, storage and signal transduction pathways. In order to identify time and tissue specific regulatory elements, the TDFs were further screened for their time and tissue specific expression and the putative promoters corresponding to the twelve differentially expressed TDFs were isolated. Comparison of the 12 upstream sequences to all described cis-acting elements resulted in the identification of 12 know cis-acting elements: two general cis-elements, one enhancer and nine specific boxes. These specific cis-elements have been characterised in other plant species and they respond to light, sugars and hormones such as gibberellins, auxins and abscisic acid (ABA). All these environmental factors play an important role during the potato tuber life cycle. (C) 2003 Elsevier Ireland Ltd. All rights reserved.
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- 2004
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11. Expression Analysis of a Family of nsLTP Genes Tissue Specifically Expressed throughout the Plant and during Potato Tuber Life Cycle
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Luisa M. Trindade, Christian W. B. Bachem, Marian Oortwijn, Richard G. F. Visser, and Beatrix Horvath
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Genetics ,Expressed sequence tag ,Physiology ,fungi ,food and beverages ,RNA ,Promoter ,Plant Science ,Biology ,Homology (biology) ,Restriction fragment ,Plant Breeding ,Laboratorium voor Plantenveredeling ,Transcription (biology) ,Gene expression ,biology.protein ,Life Science ,EPS ,Gene - Abstract
Non-specific lipid-transfer proteins (nsLTPs) are capable of binding lipid compounds in plant tissues and are coded by the nsLTP genes. Here, we present the analysis of expression of a family of potato (Solanum tuberosum)nsLTP genes that express throughout the developing plant in a highly tissue-specific manner. Three transcript-derived fragments were isolated using an amplified restriction fragment polymorphism-derived technique for RNA fingerprinting that show homology to plant nsLTP genes. These transcript-derived fragments displayed modulated expression profiles related to the development of new tissues, with a peak of transcription around the time of tuberization and just prior to sprout development, at dormancy breakage. In addition, a homologous family of expressed sequence tags was identified whose individual members could be classified according to their tissue specificity. Two subgroups of expressed sequence tags were found to express during tuber life cycle. To study the regulation of potato nsLTP genes, two putative potato nsLTP promoters were isolated and their expression was studied using promoter-marker-gene fusions. The results showed that one of the two promoters directed a highly specific pattern of expression detected in the phloem surrounding the nodes of young plants and in the same tissue of tuber related organs, whereas the second putative promoter showed little tissue or organ specificity. This difference in expression is likely due to a 331-bp insertion present in the tissue-specific promoter.
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- 2002
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12. A potato tuber-expressed mRNA with homology to steroid dehydrogenases affects gibberellin levels and plant development
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Margo Claassens, Wilco Jordi, Evert Davelaar, Luisa M. Trindade, Christian W. B. Bachem, Beatrix Horvath, and Richard G. F. Visser
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Transgene ,fungi ,food and beverages ,RNA ,Cell Biology ,Plant Science ,Genetically modified crops ,Biology ,Antisense Orientation ,Biochemistry ,Complementary DNA ,Gene expression ,Genetics ,Gibberellin ,Gene - Abstract
Summary Using cDNA-AFLP RNA fingerprinting throughout potato tuber development, we have isolated a transcript-derived fragment (TDF511) with strong homology to plant steroid dehydrogenases. During in vitro tuberization, the abundance profile of the TDF shows close correlation to the process of tuber formation. However, when tuberization is inhibited by the addition of gibberellins (GAs) to the growth medium, the appearance of TDF511 in the fingerprint is delayed, then steadily increases in intensity during later stages of development. TDF511 was used to isolate the corresponding cDNA (CB12). The DNA and deduced amino-acid sequences of the cDNA show high homology to a fruit-ripening gene from tomato, a series of steroid dehydrogenases, and the maize Ts2 gene. A section of the cDNA was cloned in antisense orientation behind a 35S CaMV promoter and transformed into potato. Transgenic plants expressing the antisense gene showed significantly earlier emergence, an increase in height, and longer tuber shape. In vitro tuberization experiments reveal extended stolon lengths in comparison to the controls. The analysis of endogenous GA levels showed that the transgenic antisense plants have elevated levels of biologically active GAs and their respective precursors. We propose that this gene plays a role in the metabolism of plant-growth substances important for tuber life cycle and plant development.
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- 2001
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13. [Untitled]
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Dick Vreugdenhil, Beatrix Horvath, Christian W. B. Bachem, Ronald J.F.J. Oomen, Richard G. F. Visser, Margo M. J. Claassens, and Suzanne Kuyt
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fungi ,food and beverages ,Plant Science ,General Medicine ,Genetically modified crops ,Biology ,Gene dosage ,Molecular biology ,Homology (biology) ,Gene product ,Complementary DNA ,Gene expression ,Genetics ,Northern blot ,Agronomy and Crop Science ,Gene - Abstract
Using the cDNA-AFLP method, we have isolated a transcript-derived fragment (TDF) which shows a differential expression pattern during tuber organogenesis of Solanum tuberosum L. The TDF was used to isolate a cDNA clone carrying a 1.5 kb insert and potentially coding for a 32.5 kDa peptide which, by homology, represents a potato homologue of an alpha-snap gene and has been designated Stsnap. Northern analysis showed that the Stsnap gene is expressed in actively dividing tissues throughout the potato plant. Analysis of genomic DNA from potato revealed that the Stsnap gene is likely to be a single-copy gene. The expression of antisense Stsnap cDNA under the control of the CaMV 35S promoter results in plants with an altered morphology such as curled leaves. Several of these transgenic lines also display cellular and developmental abnormalities with distinct changes in assimilate transport including accumulation of starch and soluble sugars in source leaves. We argue that these findings are consistent with the hypothetical function of the StSNAP gene product in vesicle targeting and fusion during plant development.
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- 2000
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14. Balancing act: matching growth with environment by the TOR signalling pathwa
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László Bögre, Beatrix Horvath, Zoltán Magyar, Rossana Henriques, Hungarian Academy of Sciences, and Ministerio de Economía y Competitividad (España)
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Physiology ,Kinase ,Arabidopsis Proteins ,Regulator ,Arabidopsis ,Plant Development ,Plant Science ,Meristem ,Biology ,biology.organism_classification ,Hedgehog signaling pathway ,Carbon ,Cell biology ,Phosphatidylinositol 3-Kinases ,Signalling ,Protein biosynthesis ,TOR complex ,Cell Size ,Signal Transduction - Abstract
One of the most fundamental aspects of growth in plants is its plasticity in relation to fluctuating environmental conditions. Growth of meristematic cells relies predominantly on protein synthesis, one of the most energy-consuming activities in cells, and thus is tightly regulated in accordance with the available nutrient and energy supplies. The Target of Rapamycin (TOR) signalling pathway takes a central position in this regulation. The core of the TOR signalling pathway is conserved throughout evolution, and can be traced back to the last eukaryotic common ancestor. In plants, a single complex constitutes the TOR signalling pathway. Manipulating the components of the TOR complex in Arabidopsis highlighted its common role as a major regulator of protein synthesis and metabolism, that is also involved in other biological functions such as cell-wall integrity, regulation of cell proliferation, and cell size. TOR, as an integral part of the auxin signalling pathway, connects hormonal and nutrient pathways. Downstream of TOR, S6 kinase and the ribosomal S6 protein have been shown to mediate several of these responses, although there is evidence of other complex non-linear TOR signalling pathway structures., The authors are grateful to the Hungarian Academy of Sciences for inviting and funding the sabbatical stay for LB in the Biological Research Centre, Szeged, in the laboratories of ZM and Ferenc Nagy. The work related to this review is funded by the Ramón y Cajal fellowship from the Spanish Ministerio de Economía y Competitividad (RYC-2011–09220) and by EU Marie Curie Career Integration Grant (PCIG2012-GA-2012–334052) to RH, by the EU Marie Curie Career Development fellowship (FP7-2012 MC-IEF-330789) to BH and LB and by the OTKA 107838 for ZM.
- Published
- 2014
15. Measuring Quality of Life: A Primer for Managed Care Pharmacists
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Jean-Francois Ricci, Somali Misra, Bradley C. Martin, Beatrix Horvath, and Steve S Gedaly
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Value (ethics) ,business.industry ,Health Policy ,Pharmaceutical Science ,Pharmacy ,humanities ,Quality of life (healthcare) ,Pharmaceutical care ,Nottingham Health Profile ,Nursing ,Data extraction ,Health care ,Managed care ,Medicine ,Operations management ,Disease management (health) ,business - Abstract
OBJECTIVE: To define quality of life (QOL), health-related quality of life (HRQOL), highlight various principles, and applications useful for measuring QOL. DATA SOURCES: Recent clinical, sociologic, and health care literature. STUDY SELECTION: Not applicable. DATA EXTRACTION: Not applicable. DATA SYNTHESIS: Health care consumers and payers are increasingly concerned about the value of health services and goods, including the value of new organizational strategies and concepts, such as disease management programs and pharmaceutical care initiatives. QOL is one outcome measure that may be used to compare and determine the value of myriad health services and goods. This article presents the concepts associated with measuring QOL and provides information on three commonly used scales to assess QOL across a broad range of patient populations. CONCLUSION: Scales for measuring HRQOL have proliferated recently. To supply the growing demand for tangible health outcomes, the use of HRQOL scales will inevitably inc...
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- 1996
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16. Pea lines carrying syml or sym2 can be nodulated by Rhizobium strains containing nodX; sym1 and sym2 are allelic
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Igor A. Tikhonovich, Ab van Kammen, T. A. Lie, Beatrix Horvath, Ton Bisseling, Olga Kulikova, Renze Heidstra, Alexander Kozik, and T. H. Noel Ellis
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Genetics ,Rhizobiaceae ,biology ,Strain (chemistry) ,food and beverages ,Introgression ,Plant Science ,General Medicine ,biology.organism_classification ,medicine.disease_cause ,Rhizobium leguminosarum ,Nod factor ,medicine ,Rhizobium ,Restriction fragment length polymorphism ,Agronomy and Crop Science ,Gene - Abstract
In wild pea varieties two genes, sym1 and sym2, have been identified that cause resistance to European Rhizobium leguminosarum bv. viciae (Rlv) strains. The sym2 gene has previously been studied in some detail and it was shown that the additional nodulation gene nodX is sufficient to overcome the sym2 controlled nodulation resistance. Here we characterize the sym1 gene. We show that the resistance conferred by sym1 can be overcome by the introduction of nodX in European Rlv strains, indicating that sym1 just as sym2 is involved in Nod factor recognition. Both sym1 and sym2 display a recessive or dominant nature depending on the Rlv strain used for inoculation. Furthermore, introgression lines containing either sym1 or sym2 are able to form nodules with Rlv strain 248 at 26°C, but not at 18°C, indicating that both sym1 and sym2 have a temperature sensitive nature. sym2 was mapped on the pea RFLP map. We found that sym1 maps in the same region of chromosome 1 as sym2. By crossing sym1 and sym2 containing introgression lines we demonstrate that sym1 and sym2 are allelic.
- Published
- 1995
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17. Lipo-oligosaccharides of Rhizobium induce infection-related early nodulin gene expression in pea root hairs
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Miklos Lados, Jean-Claude Promé, Beatrix Horvath, Herman P. Spaink, Ton Bisseling, Albert van Kammen, Renze Heidstra, and M. Moerman
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Lipopolysaccharides ,Molecular Sequence Data ,Heterologous ,Plant Science ,Nod ,Root hair ,Gene expression ,Genetics ,Life Science ,Laboratorium voor Moleculaire Biologie ,Gene ,Plant Proteins ,chemistry.chemical_classification ,Plants, Medicinal ,biology ,Base Sequence ,food and beverages ,Fatty acid ,Membrane Proteins ,Fabaceae ,Cell Biology ,DNA ,biology.organism_classification ,Cell biology ,chemistry ,Biochemistry ,Gene Expression Regulation ,Rhizobium ,lipids (amino acids, peptides, and proteins) ,Laboratory of Molecular Biology ,Bacteria - Abstract
This paper shows that lipo-oligosaccharides (Nod factors) synthesized by Rhizobium bacteria elicit the induction of infection-related early nodulin genes (PsENOD5 and PsENOD12) in pea root hairs. R. leguminosarum bv. viciae secretes a mixture of Nod factors containing a C18 fatty acid chain with 4 (C18:4) or 1 double bond (C18:1). Purified Nod factors harbouring either a C18:4 or a C18:1 acyl moiety induce the expression of the pea early nodulin genes, PsENOD5 and PsENOD12, but the kinetics of induction are different. The expression of both early nodulin genes is induced in a transient manner by the purified Nod factors while a mixture of the Nod factors extends the period during which these genes are expressed. In spite of the host-specific nature of the infection process, heterologous Nod factors of R. meliloti also induce the expression of PsENOD5 and PsENOD12 genes, though with a marked delay compared with the homologous compounds.
- Published
- 1993
18. Nodulins and nodule development
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T. Bisseling, M. Moerman, Beatrix Horvath, Francine Govers, Ben Scheres, H. Franssen, Wei-Cai Yang, and C.C.M. van de Wiel
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Root nodule ,biology ,Cytoplasm ,fungi ,food and beverages ,Primordium ,Nodule formation ,Root hair ,biology.organism_classification ,Plant cell ,Bacteria ,Rhizobia ,Cell biology - Abstract
Nodule formation on the roots of leguminous plants has been well analyzed morphologically. Based on these analyses, root nodule formation has been divided into 3 distinct steps; (i) the pre-infection stage, (ii) infection and nodule formation, and (iii) nodule function and maintenance. During the pre-infection stage (brady)rhizobia interact with growing root hairs and induce root hair curling. During the second stage, the bacteria invade the root hair cell and the root cortex through the infection thread. Meanwhile, but independently from the infection process, cortical cells start dividing at several places and at these sites, the nodule primordia are formed. Infection threads grow towards these primordia and upon contact rhizobia are released from the tips of the infection threads into the cytoplasm of the plant cells. During the third stage, the bacteria differentiate into pleomorphic bacteroids that fix atmosphere nitrogen.
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- 1990
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19. In situLocalization ofRhizobiummRNAs in Pea Root Nodules:nifA andnifH Localization
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Wei-Cai Yang, Beatrix Horvath, Ton Bisseling, J.G.J. Hontelez, and A. van Kammen
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Messenger RNA ,Root nodule ,Rhizobiaceae ,biology ,Physiology ,General Medicine ,medicine.disease_cause ,biology.organism_classification ,Rhizobium leguminosarum ,Microbiology ,medicine ,Nitrogen fixation ,Rhizobium ,Agronomy and Crop Science ,Gene ,Bacteria - Published
- 1991
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20. At least two nodD genes are necessary for efficient nodulation of alfalfa by Rhizobium meliloti
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Francisco Rodriguez-Quinones, Beatrix Horvath, Péter Putnoky, Michael Göttfert, Eva Kondorosi, and Adam Kondorosi
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DNA, Bacterial ,Genetics ,Base Sequence ,biology ,Mutant ,Nucleic acid sequence ,Nucleic Acid Hybridization ,food and beverages ,biology.organism_classification ,Homology (biology) ,Gene product ,Kinetics ,Open reading frame ,Phenotype ,Bacterial Proteins ,Genes, Bacterial ,Structural Biology ,Rhizobium ,Amino Acid Sequence ,Molecular Biology ,Gene ,Medicago sativa ,Regulator gene - Abstract
A Rhizobium meliloti DNA region (nodD1) involved in the regulation of other early nodulation genes has been delimited by directed Tn5 mutagenesis and its nucleotide sequence has been determined. The sequence data indicate a large open reading frame with opposite polarity to nodA, -B and -C, coding for a protein of 308 (or 311) amino acid residues. Tn5 insertion within the gene caused a delay in nodulation of Medicago sativa from four to seven days. Hybridization of nodD1 to total DNA of Rhizobium meliloti revealed two additional nodD sequences (nodD2 and nodD3) and both were localized on the megaplasmid pRme41b in the vicinity of the other nod genes. Genetic and DNA hybridization data, combined with nucleotide sequencing showed that nodD2 is a functional gene, while requirement of nodD3 for efficient nodulation of M. sativa could not be detected under our experimental conditions. The nodD2 gene product consists of 310 amino acid residues and shares 86.4% homology with the nodD1 protein. Single nodD2 mutants had the same nodulation phenotype as the nodD1 mutants, while a double nodD1-nodD2 mutant exhibited a more severe delay in nodulation. These results indicate that at least two functional copies of the regulatory gene nodD are necessary for the optimal expression of nodulation genes in R. meliloti.
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- 1986
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21. Host-specific regulation of nodulation genes in Rhizobium is mediated by a plant-signal, interacting with the nodD gene product
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Jeff Schell, Christian W. B. Bachem, Beatrix Horvath, and Adam Kondorosi
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Regulation of gene expression ,Genetics ,Rhizobiaceae ,General Immunology and Microbiology ,biology ,General Neuroscience ,Mutant ,food and beverages ,Articles ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,General Biochemistry, Genetics and Molecular Biology ,Gene product ,Complementation ,Putative gene ,bacteria ,Rhizobium ,Molecular Biology ,Gene - Abstract
We have identified a nodD gene from the wide host-range Rhizobium strain MPIK3030 (termed nodD1) which is essential for nodulation on Macroptilium atropurpureum (siratro). Experiments with nodA–lacZ gene fusions demonstrate that the MPIK3030 nodD1 regulates expression of the nodABC genes. Additionally, we used nodC–lacZ fusions of Rhizobium meliloti to show that the MPIK3030 nodD1 gene induces expression of these fusions by interacting with plant factors from siratro and from the non-host Medicago sativa (alfalfa). The R. meliloti nodD genes, however, only interact with alfalfa exudate. In line with these results, no complementation of MPIK3030 nodD1 mutants could be obtained on siratro with the R. meliloti nodD genes, while the MPIK3030 nodD1 can complement nodD mutants of R. meliloti on alfalfa. Furthermore, R. meliloti transconjugants harbouring the MPIK3030 nodD1 efficiently nodulate the illegitimate host siratro. When compared with other nodD sequences, the amino acid sequence of the MPIK3030 nodD1 shows a conserved aminoterminus, whereas the carboxy-terminus of the putative gene product diverges considerably. Studies on a chimeric MPIK3030/R. meliloti nodD gene indicates that the carboxy-terminal region is responsible for the interaction with plant factor(s) and may have evolved in different rhizobia specifically to interact with plant–host factors.
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- 1987
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22. Molecular genetic basis of Rhizobium–legume interactions
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D. T. Cam Ha, Adam Kondorosi, Péter Putnoky, Jeff Schell, Krystyna Slaska-Kiss, J. Gyuris, Eva Kondorosi, E. Grosskopf, Z. Banfalvi, Michael John, Beatrix Horvath, M. Lados, Jürgen Schmidt, and Zoltan Györgypal
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Botany ,Genetics ,food and beverages ,Rhizobium ,General Medicine ,Nod ,Biology ,biology.organism_classification ,Molecular Biology ,Gene ,Legume ,Biotechnology - Abstract
Recognition of the appropriate legume and nodule induction are controlled by common (nod) and host-specific nodulation (hsn) genes in Rhizobium. The nod and hsn genes are activated by the product of the regulatory nodD in conjunction with specific flavonoids excreted by the plant. Differences in the flavonoid specificity of the NodD proteins occur between different Rhizobium species, or between strains of a given species or even within one strain containing several copies of the nodD gene. Accordingly, the nodD gene controls the host-specific expression of nod and hsn genes. In addition, the nodulation genes are under not only positive but also negative regulation which is mediated by a nod-specific repressor protein. This dual control is required for optimal nodulation of the plant host. Further steps in nodule development are again controlled by the infecting Rhizobium. It was found that at least four different classes of Rhizobium fix genes are involved directly or indirectly in the expression of late nodulin genes, finally leading to the establishment of nitrogen-fixing symbiosis.Key words: Rhizobium meliloti, nodulation genes, plant signals, fix genes, alfalfa.
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- 1989
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23. Organization, structure and symbiotic function of rhizobium meliloti nodulation genes determining host specificity for alfalfa
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Beatrix Horvath, Jürgen Schmidt, Ursula Wieneke, Adam Kondorosi, Eva Kondorosi, Jeff Schell, I. Török, Michael John, Zoltan Györgypal, and Ilona Barabas
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Genetics ,Rhizobiaceae ,Base Sequence ,biology ,Mutant ,food and beverages ,Root hair ,biology.organism_classification ,General Biochemistry, Genetics and Molecular Biology ,Bacterial Proteins ,Species Specificity ,Symbiosis ,Genes, Bacterial ,Nitrogen Fixation ,Rhizobium ,Cloning, Molecular ,Medicago sativa ,Gene ,Genomic organization - Abstract
In R. meliloti we have identified four nodulation genes determining plant host-range specificity and have designated them hsn ABC and D. The genes code for 9.7, 41.7, 26.7, and 28.6 kd proteins, respectively, and are organized into two transcriptional units. Mutations in these genes affect nodulation of their natural plant hosts Medicago sativa and Melilotus albus to different extents and hsn D mutants have an altered host-range. These Nod − mutations are not complementable by nodulation genes of other Rhizobium species such as R. leguminosarum. The hsn genes determine plant-specific infection through root hairs: hsn D is required for host-specific root hair curling and nodule initiation while the hsn ABC genes control infection thread growth from the root hairs.
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- 1986
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24. Conservation of extended promoter regions of nodulation genes in Rhizobium
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Beatrix Horvath, Andras Simoncsits, Katalin Rostas, Eva Kondorosi, and Adam Kondorosi
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Genetics ,Multidisciplinary ,Hybridization probe ,Nucleic acid sequence ,Biology ,biology.organism_classification ,medicine.disease_cause ,Rhizobium leguminosarum ,Conserved sequence ,Conserved non-coding sequence ,medicine ,Rhizobium ,Biological Sciences: Genetics ,Gene ,Sequence (medicine) - Abstract
A 47-base-pair (bp) conserved sequence in the 5′-flanking regions of three transcriptional units coding for nodulation functions ( nod ABC, nod EFG, and nod H) has been identified in Rhizobium meliloti strain 41. The conserved region contains subsequences of 7 bp, 5 bp, and 25 bp. The conserved 25-bp sequence was synthesized and used as a hybridization probe; three additional copies of the sequence were identified in R. meliloti 41; all three were localized in the 135-kb nod/nif region of the symbiotic megaplasmid. Nucleotide sequence analysis of the six regions revealed that all contained the 47-bp conserved sequence but, with one exception, adjacent DNA regions did not have long conserved DNA stretches. The position of the 47-bp region was about 200-240 bp upstream of the translational start codons of the three nod genes. This conserved sequence is present in several other Rhizobium species and located adjacent to nod genes. We have demonstrated the involvement of this sequence in the expression of nodulation functions, which suggests that these extended promoter regions may have a role in the coordinated regulation of nodulation genes.
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- 1986
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25. Identification and cloning of nodulation genes from the wide host range Rhizobium strain MPIK3030
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Christian W. B. Bachem, Beatrix Horvath, Zsófia Bánfalvi, Eva Kondorosi, Jeff Schell, and Adam Kondorosi
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Genetics ,Mutant ,EcoRI ,food and beverages ,Nif gene ,biochemical phenomena, metabolism, and nutrition ,Biology ,biology.organism_classification ,Homology (biology) ,Complementation ,biology.protein ,Cosmid ,bacteria ,Rhizobium ,Molecular Biology ,Gene - Abstract
A 70 kbp segment of the megaplasmid from a broad host range Rhizobium strain (MPIK3030) was mapped with the aid of cosmid clones made in the vector pJB8. A 7.9 kbp EcoRI fragment from this region, 55 kbp away from the nif gene cluster, was shown to hybridize to the “common” nod genes from R. meliloti. Using several R. meliloti nod probes it was possible to delimit an 830 bp region as being the center of greatest homology. Sequence data from two sections of this region gave a nucleotide homology of 73.7% to the nodC gene of R. meliloti. Using Tn5 mutagenesis a clone was isolated carrying Tn5 in the highly homologous region. When tested on Macroptilium atropurpureum, this MPIK3030 derivative was shown to have a Nod− phenotype. When the wild-type allele was reintroduced into the Tn5 mutant, nodulation was restored. Interspecies complementation also showed that both R. meliloti and Rhizobium sp. MPIK3030 nod regions were able to restore nodulation to Tn5-induced nodC mutants from either strain.
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- 1985
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26. Common and Host Specific Nodulation Genes in Rhizobium Meliloti and Their Conservation in Other Rhizobia
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Z. Banfalvi, Beatrix Horvath, Christian W. B. Bachem, Péter Putnoky, E. Kondorosi, Jeff Schell, A. Kondorosi, M. Gottfert, F. Rodriguez-Quinones, Zoltan Györgypal, Jürgen Schmidt, and Michael John
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Genetics ,Medicago ,biology ,Host (biology) ,food and beverages ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Rhizobia ,Rhizobium species ,bacteria ,Rhizobium ,Gene ,Host specific ,Function (biology) - Abstract
Recognition of the appropiate legume host and nodule induction are controlled by two sets of Rhizobium genes, common nodulation (nod) and host-specific nodulation (hsn) genes. These genes have been identified in several Rhizobium species, including R.meliloti, the symbiotic partner of alfalfa (Medicago). Here we present our studies on the organization and regulation of R.meliloti nodulation genes. Moreover, these genes were used to identify and analyse genes of similar function in other rhizobia which may help us to elucidate the basis of host-specificity of Rhizobium-legume interaction and the genetic control of these processes.
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- 1987
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27. Identification And Organization Of Rhizobium Meliloti Genes Relevant To The Initiation And Development Of Nodules
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Christian W. B. Bachem, Péter Putnoky, Jeff Schell, Adam Kondorosi, I. Török, Michael Göttfert, Michael John, Jürgen Schmidt, Eva Kondorosi, Katalin Rostas, Zoltan Györgypal, and Beatrix Horvath
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biology ,food and beverages ,Nitrogenase ,Nodule (medicine) ,Agrobacterium tumefaciens ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Microbiology ,medicine ,Nitrogen fixation ,bacteria ,Rhizobium ,medicine.symptom ,Medicago sativa ,Gene ,Bacteria - Abstract
The bacterium species Rhizobium meliloti induces nitrogen fixing nodules on the roots of its host plant Medicago sativa (alfalfa). The majority of symbiotic genes of R. meliloti are located on a megaplasmid, including genes coding for early functions in nodulation (nod), the nitrogenase genes (nif) and other genes required for nitrogen fixation (fix) (Banfalvi et al. 1981; Rosenberg et al. 1981). When this megaplasmid was transferred into other Rhizobium species or into Agrobacterium tumefaciens, these latter bacteria became able to induce ineffective nodules on alfalfa, indicating that the essential genes coding for nodule initiation and development are carried by this megaplasmid (Kondorosi et al. 1982). The development of these nodules, however, halted at an early stage: infection threads did not form and neither bacteria nor bacteroids were found in the inner nodule tissue (Wong et al. 1983).
- Published
- 1985
- Full Text
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