6 results on '"somatic mutation"'
Search Results
2. FGFR3, TERT, ТР53 mutations and the FGFR3 gene expression in bladder cancer as prognostic markers
- Author
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D. S. Mikhaylenko, S. A. Sergienko, E. B. Kuznetsova, I. N. Zaborsky, M. I. Martynov, O. B. Loran, G. D. Efremov, S. A. Samoylova, B. Ya. Alekseev, V. V. Musatova, I. V. Bure, and M. V. Nemtsova
- Subjects
tcga cluster ,polymerase chain reaction ,gene expression ,bladder cancer ,Medicine ,somatic mutation ,sequencing ,prognostic classificator - Abstract
Background. Bladder cancer (BC) is a common urological cancer, 75 % of which are non-muscle invasive BC. After removal of the primary tumor, the adequate classification of malignancy and the defining of tumor progression risk remains an important issue, since it is associated with frequency of cystoscopy and choice of the BCG- or chemotherapy management.Objective: improve the algorithms of prognosis in intermediate-risk patients with non-muscle-invasive bladder cancer with the consideration of molecular characteristics of the primary tumor.Materials and methods. We studied 125 BC samples; mutations in the FGFR3, PIK3CA, TERT, and TP53 genes were determined by polymerase chain reaction and Sanger sequencing, as well as the expression of the FGFR3, EGFR, ERBB2, FOXA1, and GATA3 genes using realtime polymerase chain reaction.Results. Somatic mutations in the studied loci were detected in 65.6 % of the samples, five new mutations were identified. A decrease of the mutation frequency in the FGFR3 and TERT genes was shown, an increase — TP53 in order (Ta—T1/low G) > (T1/high G) > (>T2/any G). The largest area under the ROC curve (0.807 ± 0.092, р = 0.004) was demonstratedfor the prognostic classifier with the independent variables: mutation in FGFR3 and/or TERT; mutation TP53; overexpression of the FGFR3 gene. The FGFR3, TERT mutations and/or FGFR3 overexpression in the absence of TP53 mutation indicates minimally invasive primary tumor. On the contrary, harboring TP53 mutation indicate the features of muscle-invasive BC at the genetic level. Using this algorithm, we reclassified 21 of T1G3 BC cases as having characteristics associated with non-invasive tumor in 43 %, and invasive BC in 57 % of patients.Conclusion. The aforementioned prognostic model could be used as additional laboratory test in assessing the malignancy and progression risk of non-muscle invasive BC.
- Published
- 2021
3. Basic characteristics and features of the molecular genetic test systems designed for non-invasive diagnostics and prognosis of prostate cancer and bladder cancer
- Author
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D. S. Mikhaylenko, S. A. Sergienko, B. Ya. Alekseev, A. D. Kaprin, and M. V. Nemtsova
- Subjects
Oncology ,medicine.medical_specialty ,Urology ,polymerase chain reaction ,030232 urology & nephrology ,Urologic Oncology ,dna methylation ,Disease ,medicine.disease_cause ,prognostic classificator ,03 medical and health sciences ,Prostate cancer ,0302 clinical medicine ,Prostate ,Internal medicine ,medicine ,Radiology, Nuclear Medicine and imaging ,In patient ,somatic mutation ,Bladder cancer ,medicine.diagnostic_test ,business.industry ,medicine.disease ,prostate cancer ,test system ,medicine.anatomical_structure ,Nephrology ,030220 oncology & carcinogenesis ,gene expression ,bladder cancer ,Medicine ,Surgery ,Oncotype DX ,Carcinogenesis ,business - Abstract
Improving the laboratory diagnosis of prostate cancer and bladder cancer are still an actual problem in modern urologic oncology. Test systems for DNA or RNA alterations that occurred during carcinogenesis and associated with the malignant tumor and the prognosis of disease have been actively developed in recent years. Here we reviewed the data published mainly in the last 5 years about the molecular genetic kits for diagnosis (Progensa, SelectMDx, ExoDx Prostate Test, Prosta-Test, Confirm MDx) and assessment of prognosis (Prolaris, Decipher, Oncotype DX) in patients with prostate cancer, discussed their sensitivity and specificity. The characteristics of analogous kits and panels for bladder cancer (UroVysion, CertNDx Bladder Cancer Assay, UroSEEK, mutations in the FGFR3 and TERT genes, and the Cxbladder Monitor/Detect/Triage kit's line) were systematized. Particularly we focused on the description of the patient cohorts for whom kits mentioned above have greater diagnostic accuracy, described limitations of these test systems in consequence both a methodological and registration aspects, and their use in combination with other tumor markers. This review is aimed at oncologists, urologists, laboratory geneticists and specialists in related professions.
- Published
- 2020
4. [A revised 4 edition WHO Classification of Tumors of Hematopoietic and Lymphoid Tissues, 2017: myeloid neoplasms].
- Author
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Kovrigina AM
- Subjects
- Hematopoietic Stem Cell Transplantation, Humans, Lymphoid Tissue, Bone Marrow Neoplasms classification, Bone Marrow Neoplasms diagnosis, Myelodysplastic Syndromes classification, Myelodysplastic Syndromes diagnosis, Myeloproliferative Disorders classification, Myeloproliferative Disorders diagnosis, Neoplasms
- Abstract
The paper presents new molecular data, the principles of the classification of myeloid neoplasms, and criteria for their diagnosis according to the new edition of the WHO Classification of Tumors of Hematopoietic and Lymphoid Tissues, 2017. Current concepts of clonal hematopoiesis and models of clonal evolution are presented to characterize the common features of the molecular pathogenesis of myeloid neoplasms. There are new data and general principles of diagnosis of myeloid neoplasms: Ph-negative myeloproliferative diseases, myelodysplastic syndromes, myeloid/lymphoid neoplasms with eosinophilia and rearrangements of PDGFRA, PDGFRB, FGFR1, and PCM1-JAK2, diseases from the group of myelodysplastic/myeloproliferative diseases. Emphasis is laid on the possibilities and limitations of pathological differential diagnosis when a pathologist examines bone marrow trepanobiopsy specimens in his/her routine work.
- Published
- 2018
- Full Text
- View/download PDF
5. [Point somatic mutations in bladder cancer: key carcinogenesis events, diagnostic markers and therapeutic targets].
- Author
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Mikhailenko DS and Nemtsova MV
- Subjects
- Biomarkers, Tumor metabolism, Humans, Neoplasm Proteins metabolism, Urinary Bladder Neoplasms metabolism, Urinary Bladder Neoplasms therapy, Biomarkers, Tumor genetics, Chromosome Aberrations, Genomic Instability, Neoplasm Proteins genetics, Urinary Bladder Neoplasms diagnosis, Urinary Bladder Neoplasms genetics
- Abstract
Development of bladder cancer (BC) involves accumulating several genetic alterations in somatic cells: point mutations, extended deletions in the localization of tumor suppressor genes, amplification of oncogenes, aberrant DNA methylation, changes in the expression pattern of regulatory RNAs and numerous structural genes. From all of the above, point mutations have the greatest potential as diagnostic markers, as they frequently occur in carcinogenesis, characterize initiation and further clonal evolution of malignancy and represent a change in DNA detectable by routine molecular genetic methods. If we look at the clinical classification of bladder cancer, 90% of the BC presented by urothelial carcinoma, 80% of patients had superficial and 20% - of muscle-invasive tumors. The differences in morphological classification, staging and prognosis of bladder cancer represent different pathogenic pathways of tumor development. Superficial bladder cancer develops through a stage of hyperplasia involving activation of mutations in the genes FGFR3, PIK3CA, HRAS, ERBB2, TERT and others. It is shown that frequent point mutations FGFR3, PIK3CA and TERT are present in the tumor cells in the urine sediment and can be considered as markers for non-invasive molecular genetic diagnosis of primary BC and for monitoring of disease recurrence. Muscle-invasive bladder cancer develops through the stages of dysplasia and carcinoma in situ, in which mutations initially occur in key suppressor genes (TP53 and RB1) and a number of chromatin remodeling genes. This leads to genomic instability and multiple chromosome aberrations that are subjected to selection in the further clonal evolution of tumors towards predominance of more malignant subclones. This review presents systematized information about the main mutations in BC carcinogenesis, their role in the primary tumor progression, metastasizing and role as a target for diagnosis and targeted therapy.
- Published
- 2016
6. [Hormone Resistance and Neuroendocrine Differentiation Due to Accumulation of Genetic Lesions during Clonal Evolution of Prostate Cancer].
- Author
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Mikhaylenko DS, Efremov GD, Sivkov AV, and Zaletaev DV
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- Alternative Splicing, Androgen Antagonists pharmacology, Androgen Antagonists therapeutic use, Androgens biosynthesis, Clonal Evolution drug effects, Disease Progression, Humans, Male, Prostatic Neoplasms drug therapy, Receptors, Androgen metabolism, Androgens metabolism, Cell Differentiation drug effects, Clonal Evolution genetics, Mutation, Prostatic Neoplasms genetics, Prostatic Neoplasms pathology, Receptors, Androgen genetics
- Abstract
Progression of malignant tumors is largely due to clonal evolution of the primary tumor, clones acquiring different sets of molecular genetic lesions. Lesions can confer a selective advantage in proliferation rate or metastasis on the tumor cell population, especially if developing resistance to anticancer therapy. Prostate cancer (PCa) provides an illustrative example of clinically significant clonal evolution. The review considers the genetic alterations that occur in primary PCa and the mechanism whereby hormone-refractory PCa develops on hormone therapy, including mutations and alternative splicing of the androgen receptor gene (AR) and intratumoral androgen synthesis. Certain molecular genetic lesions determine resistance to new generation inhibitors (AR mutations that block the antagonist effect or allow other hormones to activate the receptor) or lead to neuroendocrine differentiation (repression of the AR signaling pathway, TP53 mutations, and amplification of the AURKA or MYCN oncogene). Multistep therapy based on the data about somatic mutations associated with progression and metastasis of the primary tumor can be expected to significantly improve the survival of patients with advanced PCa in the nearest future.
- Published
- 2016
- Full Text
- View/download PDF
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