1. [The Development of SpCas9 Variants with High Specificity and Efficiency Based on the HH Theory].
- Author
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Wang GH, Wang CM, Wu XJ, Chu T, Huang DW, and Li J
- Subjects
- Humans, HEK293 Cells, INDEL Mutation, RNA, Guide, CRISPR-Cas Systems genetics, RNA, Guide, CRISPR-Cas Systems metabolism, DNA genetics, DNA metabolism, DNA chemistry, Gene Editing methods, CRISPR-Associated Protein 9 genetics, CRISPR-Associated Protein 9 metabolism, CRISPR-Cas Systems, Streptococcus pyogenes genetics, Streptococcus pyogenes enzymology
- Abstract
Streptococcus pyogenes Cas9 (SpCas9) is the most popular tool in gene editing; however, off-target mutagenesis is one of the biggest impediments in its application. In our previous study, we proposed the HH theory, which states that sgRNA/DNA hybrid (hybrid) extrusion-induced enhancement of hydrophobic interactions between the hybrid and REC3/HNH is a key factor in cleavage initiation. Based on the HH theory, we analyzed the interactions between the REC3 domain and hybrid and obtained 8 mutant sites. We designed 8 SpCas9 variants (V1-V8), used digital droplet PCR to assess SpCas9-induced DNA indels in human cells, and developed high-fidelity variants. Thus, the HH theory may be employed to further optimize SpCas9-mediated genome editing systems, and the resultant V3, V6, V7, and V8 SpCas9 variants may be valuable for applications requiring high-precision genome editing.
- Published
- 2024
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