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The study of subterranean life in general and cave life in particular has been given several names, most especially biospeleology and speleobiology. Historically, biospeleology came first, and signalled that biological study was part of speleology, the science of caves. Speleology itself has come to have several meanings beyond the science of caves, but as a discipline it has not fully developed. Speleobiology emphasizes the connection with biology, especially ecology and evolutionary biology. Biospeleology can be construed as the taxonomic and distributional aspects of the biology of caves while speleobiology can be construed as the aspects pertaining to general biological principles such as evolution.

Our series of interviews with leading karstologists now turns to cave biologist. David Culver, an emeritus professor of environmental science at the American University (Washington DC, USA), talks about his relationship to karst and what subterranean biology has given to the geoscientific disciplines and what it has taken from them. His science approach is well reflected in the statement: “In the last few decades, I have done valuable little completely independent research, and collaboration with people with different skill groups has been critical”.

The study of subterranean life in general and cave life in particular has been given several names, most especially biospeleology and speleobiology. Historically, biospeleology came first, and signalled that biological study was part of speleology, the science of caves. Speleology itself has come to have several meanings beyond the science of caves, but as a discipline it has not fully developed. Speleobiology emphasizes the connection with biology, especially ecology and evolutionary biology. Biospeleology can be construed as the taxonomic and distributional aspects of the biology of caves while speleobiology can be construed as the aspects pertaining to general biological principles such as evolution. [ABSTRACT FROM AUTHOR]

This is a modest contribution to the history of science, respectively the history of the Romanian biospeleology. Biospeleology, the science created by Emile Racovitza in 1907, knew, after the death of the scientist a second period of great development. This is the thriving period which began 5o years ago, in 1956, with the reorganization of the Institute of Speleology up to 2005, including the retirement of the last biospeleologists belonging to that generation – all more or less distinguished researchers, known as such outside Romania

The rediscovery by the first author of the three letters received by him from A. Núñez Jiménez – at that time president of the Academy of Sciences of Cuba – throws new light on the events having lead to the organisation of the first biospeleological expedition to Cuba, this being at the same time the first scientific expedition abroad made by Romanian naturalists from the post-war period

The vertebrate and invertebrate fauna, environment and habitats of caves and disused mines in Nova Scotia and southern NewBrunswick are provisionally catalogued and described, based on field collections made over many years. The area was glaciatedand the subterranean fauna consists of non-troglobites all of which have arrived and colonised the caves during or following finalrecession of the Pleistocene glaciers. The statistical composition of the fauna at the higher taxonomic level is similar to that inOntario, but is less species rich and there are some notable ecological and other differences. Porcupine dung accumulations are animportant habitat in the region, constituting a cold-temperate analogue of the diverse guano habitats of southern and tropical caves.Parietal assemblages are, as in other cold temperate regions, an important component of the invertebrate fauna but here includespecies derived directly from dung communities: another parallel with tropical guano caves. An unanticipated finding is the numberof non-indigenous species now utilising local caves. These appear to have colonised unfilled ecological niches, suggesting thatpost-glacial recolonisation of the subterranean habitat in Nova Scotia has been relatively delayed. Finally the general and regionalsignificance of the subterranean fauna is briefly discussed.

Green Cave could be referred to as the extension part of the Kotumsar Cave of Kanger Valley National Park, but one can not traverse from one to another. In this study, we mapped the cave carefully and the environmental conditions have been checked carefully at each defined zone of this cave. Based on observed habitat and other behavioural characteristics the species identified from this cave are given their proper cavernicolous status. [ABSTRACT FROM AUTHOR]

Background: Bacteria present in cave often survive by modifying their metabolic pathway or other mechanism. Understanding these adopted bacteria and their survival strategy inside the cave is an important aspect of microbial ecology. Present study focuses on the bacterial community and geochemistry in five caves of Mizoram, Northeast India. The objective of this study was to explore the taxonomic composition and presumed functional diversity of cave sediment metagenomes using paired end Illumina sequencing using V3 region of 16S rRNA gene and bioinformatics pipeline. Results: Actinobacteria, Proteobacteria, Verrucomicrobia and Acidobacteria were the major phyla in all the five cave sediment samples. Among the five caves the highest diversity is found in Lamsialpuk with a Shannon index 12.5 and the lowest in Bukpuk (Shannon index 8.22). In addition, imputed metagenomic approach was used to predict the functional role of microbial community in biogeochemical cycling in the cave environments. Functional module showed high representation of genes involved in Amino Acid Metabolism in (20.9%) and Carbohydrate Metabolism (20.4%) in the KEGG pathways. Genes responsible for carbon degradation, carbon fixation, methane metabolism, nitrification, nitrate reduction and ammonia assimilation were also predicted in the present study. Conclusion: The cave sediments of the biodiversity hotspot region possessing a oligotrophic environment harbours high phylogenetic diversity dominated by Actinobacteria and Proteobacteria. Among the geochemical factors, ferric oxide was correlated with increased microbial diversity. In-silico analysis detected genes involved in carbon, nitrogen, methane metabolism and complex metabolic pathways responsible for the survival of the bacterial community in nutrient limited cave environments. Present study with Paired end Illumina sequencing along with bioinformatics analysis revealed the essential ecological role of the cave bacterial communities. These results will be useful in documenting the biospeleology of this region and systematic understanding of bacterial communities in natural sediment environments as well. [ABSTRACT FROM AUTHOR]

Three new species of the genus Plato from caves in the states of Pará and Minas Gerais, Brazil, are described. P. novalima sp. n., from Minas Gerais, is the first record of the genus in the southeastern region of Brazil. P. ferriferus sp. n. and P. striatus sp. n., from Carajás, Pará, north of Brazil, are also described. The former is an extremely abundant species, whereas the latter has only one known male specimen. Cuacuba gen. n. is proposed and represented by two new species, C. mariana sp. n. (type species) and C. morrodopilar sp. n., both from the state of Minas Gerais. Morphology of genitalia in Cuacuba gen. n. is similar to other Theridiosomatidae genera and is herein discussed. None of the proposed species presents troglomorphic adaptations. They are widespread, abundant inside caves in different and large karst areas, and each genus prefers different lithologies. [ABSTRACT FROM AUTHOR]

IntroductionUsing an integrative taxonomic approach, we investigated the morphological and molecular characters to identify the species of the genus Pseudosinella occurring in caves of the Western Carpathians and to clarify their phylogenetic relationships. Based on morphological characters, we hypothesized that Pseudosinella aggtelekiensis (Stach, 1929) and Pseudosinella paclti (Rusek, 1961) originated from different phyletic lineages.MethodsWe used the barcoding fragment of the mtDNA COI gene from 87 individuals from 16 caves to reconstruct the phylogenetic history of the genus Pseudosinella.ResultsThe molecular phylogenetic tree revealed two distinct species groups with allopatric distributions. The first group consisted of P. aggtelekiensis populations from the Slovak Karst and three undescribed species from fragmented and isolated karst areas in southeastern Slovakia. The second group, P. paclti populations in the Central Western Carpathians, was merged. This group included Pseudosinellamuranensis, a new species taxonomically described in this work. It is characterized by highly developed troglomorphic features and is restricted to a small karst area, the Muranska planina Plateau. The phylogeny of the genus Pseudosinella from the caves of the Western Carpathians revealed a Miocene diversification. According to molecular calibration, the two distinct Pseudosinella lineages were separated in the Middle Miocene, about 14.51 Mya, followed by further diversification in the P. paclti lineage 10.89 Mya and in the P. aggtelekiensis lineage 11.14 Mya.DiscussionThis phylogeny is consistent with the uplift of Triassic limestones during the early formation of the Western Carpathians in the Paratethys region and the initial development of caves during this period. The study provides further important evidence that the Western Carpathians played a significant role as an independent speciation center of the obligate cave fauna in Europe.

In the Lessini Mountains, the southernmost prealpine area in the Veneto region, thousands of caves are found, many of which have been extensively studied from the biological point of view. Numerous studies have been carried out on taxonomic and biogeographic aspects over the last hundred years. Two caves, in particular, have been found to be extremely rich in species adapted to life in subterranean environments. These are the Arena Cave in the Monti Lessini Veronesi and the Buso della Rana cave system in the Monti Lessini Vicentini. The two caves have extremely different development: Arena Cave is about 100 meters in length, and the Buso della Rana-Pisatela cave system is more than 37 km in length. Despite this huge difference in size, they both have the highest number of subterranean dwelling species in northern Italy (16 troglobionts and 8 stygobionts in Arena Cave, and 7 troglobionts and 11 stygobionts in the Buso della Rana-Pisatela cave system).

Hipposideros spp. are insectivorous bats and karst cave dwellers. This study aimed to study the roosting ecology, reproduction, and population fluctuations of three species H. diadema, H. larvatus, and H. ater in Gunung Sewu Karst region, Indonesia. Age and reproductive status of individuals were identified and analyzed using a combination of forearm length (FA) and body mass grades (W). Multiple regression analysis was used to determine the correlation between population size, rainfall and population structure based on FA, reproductive status, and W. Crude birth rate (CBR) and general fertility rate (GFR) were used to determine the population’s birth rate and female fertility. The results showed that the population of the three Hipposideros species were quite stable over the year with a peak in January which classified them as monoestrous, with mating, pregnancy, and lactation occurring once a year with no delay between mating and pregnancy. Pregnancy lasted 8–12 weeks and lactation 4–5 weeks. The population structure of the three species tended to be stable over the year. The CBR and GFR values can be used for rapid assessment guidelines in an area. [ABSTRACT FROM AUTHOR]

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The Dinaric Karst is a global hotspot for subterranean diversity, with two distinct peaks of species richness in the northwest and southeast, and an area of a lower species richness in the central part. In this article, we present a species list and describe the ecological conditions of the Lukina jama–Trojama cave system, located in the central part of the Dinaric Karst. This cave system is the deepest and one of the most logistically challenging cave systems sampled so far in the Dinaric Karst. Repeated sampling resulted in a list of 45 species, including 25 troglobionts, 3 troglophiles, 16 stygobionts, and 1 stygophile. Most of the recorded species are endemic to the Velebit Mountain, while three species are endemic to the Lukina jama–Trojama cave system. Within the system, species richness peaks in the deepest third of the cave, most likely reflecting the harsh ecological conditions in the upper parts, including ice, cold winds, and occasional waterfalls. Milder and more stable deeper parts of the cave contain a rich subterranean species community, part of which is associated with two very distinct aquatic habitats, the cave hygropetric and the phreatic zone. The newly recognized hotspot of subterranean biodiversity in the central Dinaric Karst, which has emerged between the two known centers of biodiversity, further highlights the species richness in large cave systems, but also challenges the diversity patterns in the Dinaric Karst overall.

Specialized subterranean species are iconic examples of convergent evolution driven by environmental constraints, representing an ideal model system for eco-evolutionary studies. However, scientific research on the behavioural adaptations of subterranean organisms has lagged and is biased mostly towards a few model species. Through a systematic literature review, we aimed to assess quantitatively whether a congruent evolution of behavioural traits among subterranean species exists. We considered four types of behaviours (exploratory, feeding, social and anti-predator) and tested predictions about their occurrence among species with different degrees of adaptation to subterranean environments. We argue that these behaviours constitute the earliest adaptations to three main ecological factors characterizing subterranean habitats, namely the constant darkness, the limited food resources and the reduced predator pressure. Darkness selects for individuals that rely on non-visual cues to explore their surroundings, track food resources and locate potential sexual partners. The reduced availability of food promotes high foraging plasticity and deters species from adopting aggressive behaviours towards conspecifics. The reduced predator pressure allows species to abandon specific anti-predator behaviours and permits safer execution of their biological activities. Our analyses show that these four behaviours are likely to represent the result of an early convergent adaptation to the subterranean realm. [ABSTRACT FROM AUTHOR]

An extraordinary longevity has been observed in some cave species, and this raised the hypothesis that a longer lifespan may be considered one of the characteristic traits of these animals. However, only a few cave species have been studied thus far, and a firm conclusion remains to be drawn. Here we review the available knowledge on the longevity of subterranean species, point out the limitations of previous studies, and provide suggestions for future studies to answer important questions regarding the longevity in cave animals, its adaptive value and the related promoting factors. We also argue that studying the longevity in cave animals will contribute to the field of aging, especially to understanding the evolution of this phenomenon.

Abstract: Supercooling points (SCPs), lower lethal temperatures (LLTs), and the effect of short-term exposures (1min) to low temperatures were examined in the adults of two stenothermal leptodirin species, Neobathyscia mancinii and Neobathyscia pasai (Coleoptera, Cholevidae). Specimens were collected from two caves in the Venetian Prealps (NE-Italy). Inter-species comparison highlighted lower values of SCP in N. mancinii (−7.1±0.9°C) than in N. pasai (−6.4±0.3°C), with no significant intersexual differences in both species. N. pasai (LLT50±SE=−16.96±2.30°C; LLT100=−25.41°C) tolerated short exposures to subzero temperatures better than N. mancinii (LLT50±SE=−4.89±1.08°C; LLT100=−11.72°C). According to the mortality and cumulative proportion of individual freezing curves (CPIF), SCPs and LLT100, N. pasai may be defined as “strongly freeze tolerant”, N. mancinii as “moderately freezing tolerant”. Overall, these results may justify the different in-cave habitat selection showed by the two species (N. pasai was abundant close to the entrance where the temperature is variable whereas N. mancinii was confined to the internal part of the cave where the temperature is constant throughout the year), and suggest hypotheses on the effects of such habitat selection on freeze tolerance strategy adopted. Finally, they give new insights into possible responses to climate changes in cave dwelling species. [ABSTRACT FROM AUTHOR]

Although there are no published studies and limited data documenting damage by rodents in Hawaiian caves, our incidental observations during more than 40 years of surveying caves indicate that introduced rodents, especially the roof rat, Rattus rattus, pose significant threats to vulnerable cave resources. Caves, with their nearly constant and predictable physical environment often house important natural and cultural features including biological, paleontological, geological, climatic, mineralogical, cultural, and archaeological resources. All four invasive rodents in Hawai‘i commonly nest in cave entrances and rock shelters, but only the roof rat (Rattus rattus) habitually enters caves and utilizes areas in total darkness. Skeletons and feces have been found in the deepest passages, sometimes over a kilometer from the nearest known entrance although the animals may have used nearby small, inconspicuous entrances. Their impacts include damage to rare native plants in cave entrances; predation on vulnerable cave-inhabiting species, such as Thaumatogryllus tree crickets, and native moths roosting in caves; destruction of the irreplaceable remains of the extinct terrestrial fauna; damage to organic material associated with cultural and archaeological resources, thereby obscuring the historical record of humans in the islands; introduction of unnatural nutrients into subterranean ecosystems via their bodies and feces allowing the colonization of caves by other harmful alien species; and disturbance of research sites. Furthermore, the extirpation of colonies of cave-roosting moths has impacted native birds nesting in the entrance and twilight zones.

Bats (Chiroptera) are divided into two suborders (Yinpterochiroptera and Yangochiroptera). More than 50% of species of bats use caves as their roosting sites. Thus, they play a crucial role in the cave ecosystem. For that reason, they also exist as keystone species in the karst area. Gunung Sewu is one of the karst areas in Indonesia that best exemplifies tropical karst. Furthermore, Gunung Sewu is still at risk of habitat loss despite being designated as a Geopark. This study aimed to understand the diversity of bats that live in caves in the karst region of Gunung Sewu, specifically in four caves near Ngobaran Beach between April and June 2020. A harp net and misnet placed at the cave’s entrance were used to capture bats for data collection. After they were captured, the bats were identified using Morphometry and the Shannon-Wiener index. Through another index, Margalef index, the bat diversity in the four cave habitats was expressed, with a discovery that there are many different species. Based on the Jaccard similarity index, bats were categorized again using cluster analysis and the unweighted pair-group method using arithmetic averages (UPGMA). A total of nine species across five families were identified. The diversity of existing species variety was also recognized by analyzing the composition of the four cavern inhabitants. The four cave ecosystems’ bat diversity was divided into three categories: moderate variety, low similarity, and high species diversity. Except for Cekelan 1 Cave and Gebyog Cave (P=0.015), other variations did not demonstrate a meaningful difference (P0.05). This demonstrates how different each ecosystem is. Therefore, they could be classified as potentially spoiled habitats, demanding additional conservation efforts.

Abstract Background The underlying mechanisms and processes that prompt the colonisation of extreme environments, such as caves, constitute major research themes of evolutionary biology and biospeleology. The special adaptations required to survive in subterranean environments (low food availability, hypoxic waters, permanent darkness), and the geographical isolation of caves, nominate cave biodiversity as ideal subjects to answer long-standing questions concerning the interplay amongst adaptation, biogeography, and evolution. The present project aims to examine the phylogeographic patterns exhibited by two sympatric species of surface and cave-dwelling peracarid crustaceans (Asellus aquaticus and Niphargus hrabei), and in doing so elucidate the possible roles of isolation and exaptation in the colonisation and successful adaptation to the cave environment. Results Specimens of both species were sampled from freshwater hypogean (cave) and epigean (surface) habitats in Hungary, and additional data from neighbouring countries were sourced from Genbank. Sequencing of mitochondrial and nuclear loci revealed, through haplotype network reconstruction (TCS) and phylogenetic inference, the genetic structure, phylogeographic patterns, and divergence-time estimates of A. aquaticus and N. hrabei surface and cave populations. Contrasting phylogeographic patterns were found between species, with A. aquaticus showing strong genetic differentiation between cave and surface populations and N. hrabei lacking any evidence of genetic structure mediated by the cave environment. Furthermore, N. hrabei populations show very low levels of genetic differentiation throughout their range, which suggests the possibility of recent expansion events over the last few thousand years. Conclusions Isolation by cave environment, rather than distance, is likely to drive the genetic structuring observed between immediately adjacent cave and surface populations of A. aquaticus, a predominantly surface species with only moderate exaptations to subterranean life. For N. hrabei, in which populations exhibit a fully ‘cave-adapted’ (troglomorphic) phenotype, the lack of genetic structure suggests that subterranean environments do not pose a dispersal barrier for this surface-cave species.

The Snezhnaya (=Snow) Cave System (depth −1760 m; total length 40.8 km), located in the West Caucasus, is inhabited by distinctly troglomorphic collembolan species from several families. Two new species of the family Arrhopalitidae occur in the deep parts of the system. Both are highly morphologically specialized; however, they evolved into different troglobiont life forms. Arrhopalites profundus sp. nov. with extremely long claws, lamellate mucro, and an enlarged sensory organ of third antennal segment lives exclusively in hygropetric and epineustonic habitats, whereas Pygmarrhopalites rystsovi sp. nov., with greatly elongated and multi-subsegmentated antennae and long legs, prefers open terrestrial spaces. The troglomorphy, as well as ecological life forms of the obligate cave-dwelling Arrhopalitidae, in general, are discussed and classified as neustonic-hygropetric, atmobiont, intrasubstrate, and intermediate troglomorphs.

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Animals that inhabit subterranean environments often undergo various distinct phenotypic modifications (referred to as "troglomorphy") as they transition to life in perpetual darkness. However, the molecular basis behind troglomorphy remains poorly understood, particularly in regards to the mechanisms involved in the reduction and/or loss of traits at the transcriptomic level. In this study, we investigate the transcriptional basis behind vision loss in populations of cave-dwelling crustaceans. We employ phylogenetic and transcriptomic methods on surface and cave-adapted populations of an emerging model species for biospeleology, the isopod Asellus aquaticus (Linnaeus, 1758), and the amphipod Niphargus hrabei S. Karaman, 1932. These two species show contrasting directionality in the surface-cave transition, which positions them as ideal study subjects. Asellus aquaticus is common in surface waters and is only occasionally found in caves, where its populations present different degrees of eye reduction and pigmentation. On the other hand, the eyeless N. hrabei has successfully colonized surface environments despite belonging to an almost exclusively cave-dwelling genus. By sequencing and assembling robust de novo transcriptomes we characterized differences in visual genes and pathways among surface and cave populations of the aforementioned species. Our results indicate that despite having reduced eyes, recent cave colonizer A. aquaticus is still capable of expressing functional visual opsins and major components of the phototransduction pathway within the cave. Niphargus hrabei, a species with an ancient cave origin, shows no clear indication of being capable of sight. However, the expression of putative functional visual opsins and other phototransduction genes was maintained, which suggests that this eyeless species might be capable of extraocular photoreception. With the present study, we aim to bring forth the Molnár János Cave system as a promising research avenue to improve our understanding of patterns of reduction and loss of vision in caves and other aphotic environments. [ABSTRACT FROM AUTHOR]

Our understanding of the evolutionary history and ecology of cave-associated species has been driven historically by studies of morphologically adapted cave-restricted species. Our understanding of the evolutionary history and ecology of nonrestricted cave species, troglophiles, is limited to a few studies, which present differing accounts of troglophiles' relationship with the cave habitat, and its impact on population dynamics. Here, we used phylogenetics, demographic statistics, and population genetic methods to study lineage divergence, dates of divergence, and population structure in the Cave Salamander, Eurycea lucifuga, across its range. In order to perform these analyses, we sampled 233 individuals from 49 populations, using sequence data from three gene loci as well as genotyping data from 19 newly designed microsatellite markers. We find, as in many other species studied in a phylogeographic context, discordance between patterns inferred from mitochondrial relationships and those inferred by nuclear markers indicating a complicated evolutionary history in this species. Our results suggest Pleistocene-based divergence among three main lineages within E. lucifuga corresponding to the western, central, and eastern regions of the range, similar to patterns seen in species separated in multiple refugia during climatic shifts. The conflict between mitochondrial and nuclear patterns is consistent with what we would expect from secondary contact between regional populations following expansion from multiple refugia. [ABSTRACT FROM AUTHOR]

Ashley, D.C. Department of Biology, Missouri Western State College. A DESCRIPTION OF TWO BIOSPELEOLOGY COURSES AVAILABLE TO MISSOURI STUDENTS. B10355 (Cave Ecology) is a three credit course available to students [...]

Abstract Background Bacteria present in cave often survive by modifying their metabolic pathway or other mechanism. Understanding these adopted bacteria and their survival strategy inside the cave is an important aspect of microbial ecology. Present study focuses on the bacterial community and geochemistry in five caves of Mizoram, Northeast India. The objective of this study was to explore the taxonomic composition and presumed functional diversity of cave sediment metagenomes using paired end Illumina sequencing using V3 region of 16S rRNA gene and bioinformatics pipeline. Results Actinobacteria, Proteobacteria, Verrucomicrobia and Acidobacteria were the major phyla in all the five cave sediment samples. Among the five caves the highest diversity is found in Lamsialpuk with a Shannon index 12.5 and the lowest in Bukpuk (Shannon index 8.22). In addition, imputed metagenomic approach was used to predict the functional role of microbial community in biogeochemical cycling in the cave environments. Functional module showed high representation of genes involved in Amino Acid Metabolism in (20.9%) and Carbohydrate Metabolism (20.4%) in the KEGG pathways. Genes responsible for carbon degradation, carbon fixation, methane metabolism, nitrification, nitrate reduction and ammonia assimilation were also predicted in the present study. Conclusion The cave sediments of the biodiversity hotspot region possessing a oligotrophic environment harbours high phylogenetic diversity dominated by Actinobacteria and Proteobacteria. Among the geochemical factors, ferric oxide was correlated with increased microbial diversity. In-silico analysis detected genes involved in carbon, nitrogen, methane metabolism and complex metabolic pathways responsible for the survival of the bacterial community in nutrient limited cave environments. Present study with Paired end Illumina sequencing along with bioinformatics analysis revealed the essential ecological role of the cave bacterial communities. These results will be useful in documenting the biospeleology of this region and systematic understanding of bacterial communities in natural sediment environments as well.