34 results on '"Ziegelmayer, Sebastian"'
Search Results
2. Development of an image-based Random Forest classifier for prediction of surgery duration of laparoscopic sigmoid resections
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Lippenberger, Florian, Ziegelmayer, Sebastian, Berlet, Maximilian, Feussner, Hubertus, Makowski, Marcus, Neumann, Philipp-Alexander, Graf, Markus, Kaissis, Georgios, Wilhelm, Dirk, Braren, Rickmer, and Reischl, Stefan
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- 2024
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3. Spectral computed tomography angiography using a gadolinium-based contrast agent for imaging of pathologies of the aorta
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Graf, Markus, Gassert, Felix G., Marka, Alexander W., Gassert, Florian T., Ziegelmayer, Sebastian, Makowski, Marcus, Kallmayer, Michael, and Nadjiri, Jonathan
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- 2024
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4. Machine learning assisted feature identification and prediction of hemodynamic endpoints using computed tomography in patients with CTEPH
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Gawlitza, Joshua, Endres, Sophie, Fries, Peter, Graf, Markus, Wilkens, Heinrike, Stroeder, Jonas, Buecker, Arno, Massmann, Alexander, and Ziegelmayer, Sebastian
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- 2024
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5. Multilingual feasibility of GPT-4o for automated Voice-to-Text CT and MRI report transcription
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Busch, Felix, Prucker, Philipp, Komenda, Alexander, Ziegelmayer, Sebastian, Makowski, Marcus R, Bressem, Keno K, and Adams, Lisa C
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- 2025
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6. Algorithmic transparency and interpretability measures improve radiologists’ performance in BI-RADS 4 classification
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Jungmann, Friederike, Ziegelmayer, Sebastian, Lohoefer, Fabian K., Metz, Stephan, Müller-Leisse, Christina, Englmaier, Maximilian, Makowski, Marcus R., Kaissis, Georgios A., and Braren, Rickmer F.
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- 2023
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7. Additional MRI for initial M-staging in pancreatic cancer: a cost-effectiveness analysis
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Gassert, Felix G., Ziegelmayer, Sebastian, Luitjens, Johanna, Gassert, Florian T., Tollens, Fabian, Rink, Johann, Makowski, Marcus R., Rübenthaler, Johannes, and Froelich, Matthias F.
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- 2022
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8. Radiologic predictors for failure of non-operative management of complicated diverticulitis: a single-centre cohort study
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Reischl, Stefan, Roehl, Kai Dominik, Ziegelmayer, Sebastian, Friess, Helmut, Makowski, Marcus Richard, Wilhelm, Dirk, Novotny, Alexander Rudolf, Gaa, Jochen, and Neumann, Philipp-Alexander
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- 2021
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9. Evaluating Treatment Response in GEJ Adenocarcinoma: The Role of Pretherapeutic and Posttherapeutic Iodine Mapping.
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Graf, Markus, Gawlitza, Joshua, Makowski, Marcus, Meurer, Felix, Huber, Thomas, and Ziegelmayer, Sebastian
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- 2024
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10. Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance
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Schultheiss, Manuel, Schmette, Philipp, Bodden, Jannis, Aichele, Juliane, Müller-Leisse, Christina, Gassert, Felix G., Gassert, Florian T., Gawlitza, Joshua F., Hofmann, Felix C., Sasse, Daniel, von Schacky, Claudio E., Ziegelmayer, Sebastian, De Marco, Fabio, Renger, Bernhard, Makowski, Marcus R., Pfeiffer, Franz, and Pfeiffer, Daniela
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- 2021
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11. [18F]FDG PET/MRI enables early chemotherapy response prediction in pancreatic ductal adenocarcinoma
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Harder, Felix N., Jungmann, Friederike, Kaissis, Georgios A., Lohöfer, Fabian K., Ziegelmayer, Sebastian, Havel, Daniel, Quante, Michael, Reichert, Maximillian, Schmid, Roland M., Demir, Ihsan Ekin, Friess, Helmut, Wildgruber, Moritz, Siveke, Jens, Muckenhuber, Alexander, Steiger, Katja, Weichert, Wilko, Rauscher, Isabel, Eiber, Matthias, Makowski, Marcus R., and Braren, Rickmer F.
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- 2021
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12. Feature Robustness and Diagnostic Capabilities of Convolutional Neural Networks Against Radiomics Features in Computed Tomography Imaging
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Ziegelmayer, Sebastian, Reischl, Stefan, Harder, Felix, Makowski, Marcus, Braren, Rickmer, and Gawlitza, Joshua
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- 2021
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13. Feature Robustness and Diagnostic Capabilities of Convolutional Neural Networks Against Radiomics Features in Computed Tomography Imaging
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Ziegelmayer, Sebastian, Reischl, Stefan, Harder, Felix, Makowski, Marcus, Braren, Rickmer, and Gawlitza, Joshua
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- 2022
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14. Comparison of Virtual Non-Contrast and True Non-Contrast CT Images Obtained by Dual-Layer Spectral CT in COPD Patients.
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Steinhardt, Manuel, Marka, Alexander W., Ziegelmayer, Sebastian, Makowski, Marcus, Braren, Rickmer, Graf, Markus, and Gawlitza, Joshua
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COMPUTED tomography ,CHRONIC obstructive pulmonary disease ,CONTRAST-enhanced magnetic resonance imaging ,CONTRAST media ,BODY mass index - Abstract
Chronic obstructive pulmonary disease (COPD) is one of the leading causes of death. Recent studies have underlined the importance of non-contrast-enhanced chest CT scans not only for emphysema progression quantification, but for correlation with clinical outcomes as well. As about 40 percent of the 300 million CT scans per year are contrast-enhanced, no proper emphysema quantification is available in a one-stop-shop approach for patients with known or newly diagnosed COPD. Since the introduction of spectral imaging (e.g., dual-energy CT scanners), it has been possible to create virtual non-contrast-enhanced images (VNC) from contrast-enhanced images, making it theoretically possible to offer proper COPD imaging despite contrast enhancing. This study is aimed towards investigating whether these VNC images are comparable to true non-contrast-enhanced images (TNC), thereby reducing the radiation exposure of patients and usage of resources in hospitals. In total, 100 COPD patients with two scans, one with (VNC) and one without contrast media (TNC), within 8 weeks or less obtained by a spectral CT using dual-layer technology, were included in this retrospective study. TNC and VNC were compared according to their voxel-density histograms. While the comparison showed significant differences in the low attenuated volumes (LAVs) of TNC and VNC regarding the emphysema threshold of −950 Houndsfield Units (HU), the 15th and 10th percentiles of the LAVs used as a proxy for pre-emphysema were comparable. Upon further investigation, the threshold-based LAVs (−950 HU) of TNC and VNC were comparable in patients with a water equivalent diameter (DW) below 270 mm. The study concludes that VNC imaging may be a viable option for assessing emphysema progression in COPD patients, particularly those with a normal body mass index (BMI). Further, pre-emphysema was generally comparable between TNC and VNC. This approach could potentially reduce radiation exposure and hospital resources by making additional TNC scans obsolete. [ABSTRACT FROM AUTHOR]
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- 2024
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15. Improved detection rates and treatment planning of head and neck cancer using dual-layer spectral CT
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Lohöfer, Fabian K., Kaissis, Georgios A., Köster, Frances L., Ziegelmayer, Sebastian, Einspieler, Ingo, Gerngross, Carlos, Rasper, Michael, Noel, Peter B., Koerdt, Steffen, Fichter, Andreas, Rummeny, Ernst J., and Braren, Rickmer F.
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- 2018
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16. CT Attenuation of Hepatic Pancreatic Cancer Metastases Correlates with Prognostically Detrimental Metastatic Necrosis.
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Reischl, Stefan, Ziegelmayer, Sebastian, Graf, Markus, Gawlitza, Joshua, Sauter, Andreas Philipp, Steinhardt, Manuel, Weber, Marie-Christin, Neumann, Philipp-Alexander, Makowski, Marcus Richard, Lohöfer, Fabian Karl, Mogler, Carolin, and Braren, Rickmer Früdd
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PANCREATIC cancer , *METASTASIS , *NECROSIS , *PANCREATIC duct , *COMPUTED tomography - Abstract
Percutaneous CT-guided biopsy is a frequently performed procedure for the confirmation and molecular workup of hepatic metastases of pancreatic ductal adenocarcinoma (PDAC). Tumor necrosis of primary PDAC has shown a negative prognostic impact in recent studies. This study aims to examine predictability in CT scans and the prognostic impact of necrosis in hepatic metastases of PDAC. In this tertiary-center retrospective cohort study, we included 36 patients with hepatic metastases of PDAC who underwent CT-guided hepatic biopsies. Normalized attenuation of the biopsied metastasis was determined in venous phase contrast-enhanced planning scans obtained prior to biopsy by automatic, threshold-based 3D segmentation and manual, blinded 2D segmentation. A board-certified pathologist specialized in hepatic pathology histologically quantified the tumor necrosis and cellularity of the biopsy cylinders. We found a significant inverse-linear correlation between normalized attenuation and the fraction of necrosis (Pearson's r = 0.51, p < 0.001 for automatic 3D segmentation or Pearson's r = 0.52, p < 0.001 for manual 2D segmentation), whereas no correlation was found with tumor cellularity. Additionally, we discovered that patients with a fraction of necrosis ≥ 20% in metastases had a significantly shorter overall survival (p < 0.035). In summary, tumor necrosis of PDAC metastases can be estimated from contrast-enhanced CT scans, which could help to improve biopsy sample pattern planning. In addition, liver metastatic necrosis may serve as a prognostic biomarker in PDAC. [ABSTRACT FROM AUTHOR]
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- 2023
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17. A machine learning model for the prediction of survival and tumor subtype in pancreatic ductal adenocarcinoma from preoperative diffusion-weighted imaging
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Kaissis, Georgios, Ziegelmayer, Sebastian, Lohöfer, Fabian, Algül, Hana, Eiber, Matthias, Weichert, Wilko, Schmid, Roland, Friess, Helmut, Rummeny, Ernst, Ankerst, Donna, Siveke, Jens, and Braren, Rickmer
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- 2019
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18. Promoting Learning Through Explainable Artificial Intelligence: An Experimental Study in Radiology.
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Ellenrieder, Sara, Kallina, Emma, Pumplun, Luisa, Gawlitza, Joshua Felix, Ziegelmayer, Sebastian, and Buxmann, Peter
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MACHINE learning ,DECISION support systems ,RADIOLOGY ,DECISION making ,ARTIFICIAL intelligence - Abstract
The deployment of machine learning (ML)-based decision support systems (DSSs) in high-risk environments such as radiology is increasing. Despite having achieved high decision accuracy, they are prone to errors. Thus, they are primarily used to assist radiologists in their decision making. However, collaborative decision making poses risks to the decision maker, e.g. automation bias and long-term performance degradation. To address these issues, we propose combining findings of the research streams of explainable artificial intelligence and education to promote human learning through interaction with ML-based DSSs. We provided radiologists with explainable vs nonexplainable decision support that was high- vs low-performing in a between-subject experimental study to support manual segmentation of 690 brain tumor scans. Our results show that explainable ML-based DSSs improved human learning outcomes and prevented false learning triggered by incorrect decision support. In fact, radiologists were able to learn from errors made by the low-performing explainable ML-based DSS. [ABSTRACT FROM AUTHOR]
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- 2023
19. FRI-071 Complications following percutaneous liver biopsy: results of a nationwide database
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Graf, Markus, Graf, Christiana, Ziegelmayer, Sebastian, Gawlitzka, Joshua, Makowski, Markus, Paprottka, Philipp, Willemsen, Nele, and Nadjiri, Jonathan
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- 2024
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20. Prospectively Accelerated T2-Weighted Imaging of the Prostate by Combining Compressed SENSE and Deep Learning in Patients with Histologically Proven Prostate Cancer.
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Harder, Felix N., Weiss, Kilian, Amiel, Thomas, Peeters, Johannes M., Tauber, Robert, Ziegelmayer, Sebastian, Burian, Egon, Makowski, Marcus R., Sauter, Andreas P., Gschwend, Jürgen E., Karampinos, Dimitrios C., and Braren, Rickmer F.
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DEEP learning ,PROSTATE ,MAGNETIC resonance imaging ,ARTIFICIAL intelligence ,QUANTITATIVE research ,DIAGNOSTIC imaging ,QUALITATIVE research ,COMPARATIVE studies ,SCALE analysis (Psychology) ,DESCRIPTIVE statistics ,PROSTATE tumors ,LONGITUDINAL method - Abstract
Simple Summary: Since prostate MRI is increasingly applied and yet limited by long acquisition times, we prospectively investigated the performance of a novel reconstruction algorithm combining compressed sensing, parallel imaging and deep learning (C-SENSE AI) in patients with histologically proven prostate cancer. Highly accelerated T2w images were compared to clinical standard-of-reference T2w images. C-SENSE AI enabled a 58% acceleration in T2w imaging of the prostate while obtaining significantly better image quality and tumor detection. C-SENSE AI seems particularly interesting in view of the need for accelerated prostate MRI (e.g., in screening protocols) with preserved high image quality. Background: To assess the performance of prospectively accelerated and deep learning (DL) reconstructed T2-weighted (T2w) imaging in volunteers and patients with histologically proven prostate cancer (PCa). Methods: Prospectively undersampled T2w datasets were acquired with acceleration factors of 1.7 (reference), 3.4 and 4.8 in 10 healthy volunteers and 23 patients with histologically proven PCa. Image reconstructions using compressed SENSE (C-SENSE) and a combination of C-SENSE and DL-based artificial intelligence (C-SENSE AI) were analyzed. Qualitative image comparison was performed using a 6-point Likert scale (overall image quality, noise, motion artifacts, lesion detection, diagnostic certainty); the T2 and PI-RADS scores were compared between the two reconstructions. Additionally, quantitative image parameters were assessed (apparent SNR, apparent CNR, lesion size, line profiles). Results: All C-SENSE AI-reconstructed images received a significantly higher qualitative rating compared to the C-SENSE standard images. Analysis of the quantitative parameters supported this finding, with significantly higher aSNR and aCNR. The line profiles demonstrated a significantly steeper signal change at the border of the prostatic lesion and the adjacent normal tissue in the C-SENSE AI-reconstructed images, whereas the T2 and PI-RADS scores as well as the lesion size did not differ. Conclusion: In this prospective study, we demonstrated the clinical feasibility of a novel C-SENSE AI reconstruction enabling a 58% acceleration in T2w imaging of the prostate while obtaining significantly better image quality. [ABSTRACT FROM AUTHOR]
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- 2022
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21. [¹⁸F]FDG PET/MRI enables early chemotherapy response prediction in pancreatic ductal adenocarcinoma
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Harder, Felix N., Jungmann, Friederike, Kaissis, Georgios A., Lohöfer, Fabian K., Ziegelmayer, Sebastian, Havel, Daniel, Quante, Michael, Reichert, Maximillian, Schmid, Roland M., Demir, Ihsan Ekin, Friess, Helmut, Wildgruber, Moritz, Siveke, Jens, Muckenhuber, Alexander, Steiger, Katja, Weichert, Wilko, Rauscher, Isabel, Eiber, Matthias, Makowski, Marcus R., and Braren, Rickmer F.
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Medizin - Abstract
Purpose: In this prospective exploratory study, we evaluated the feasibility of [¹⁸F]fluorodeoxyglucose ([¹⁸F]FDG) PET/MRI-based chemotherapy response prediction in pancreatic ductal adenocarcinoma at two weeks upon therapy onset. Material and methods: In a mixed cohort, seventeen patients treated with chemotherapy in neoadjuvant or palliative intent were enrolled. All patients were imaged by [¹⁸F]FDG PET/MRI before and two weeks after onset of chemotherapy. Response per RECIST1.1 was then assessed at 3 months [¹⁸F]FDG PET/MRI-derived parameters (MTV₅₀%, TLG₅₀%, MTV₂.₅, TLG₂.₅, SUVmₐₓ, SUVpₑₐk, ADCmₐₓ, ADCmₑₐn and ADCmin) were assessed, using multiple t-test, Man–Whitney-U test and Fisher’s exact test for binary features. Results: At 72 ± 43 days, twelve patients were classified as responders and five patients as non-responders. An increase in ∆MTV₅₀% and ∆ADC (≥ 20% and 15%, respectively) and a decrease in ∆TLG₅₀% (≤ 20%) at 2 weeks after chemotherapy onset enabled prediction of responders and non-responders, respectively. Parameter combinations (∆TLG₅₀% and ∆ADCmₐₓ or ∆MTV₅₀% and ∆ADCmₐₓ) further improved discrimination. Conclusion: Multiparametric [¹⁸F]FDG PET/MRI-derived parameters, in particular indicators of a change in tumor glycolysis and cellularity, may enable very early chemotherapy response prediction. Further prospective studies in larger patient cohorts are recommended to their clinical impact. CA Extern
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- 2021
22. Cost-Effectiveness of Artificial Intelligence Support in Computed Tomography-Based Lung Cancer Screening.
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Ziegelmayer, Sebastian, Graf, Markus, Makowski, Marcus, Gawlitza, Joshua, and Gassert, Felix
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ARTIFICIAL intelligence , *LUNG tumors , *EARLY detection of cancer , *RETROSPECTIVE studies , *UNCERTAINTY , *MEDICAL care costs , *COST effectiveness , *DECISION making , *COMPUTED tomography , *QUALITY-adjusted life years - Abstract
Simple Summary: Lung cancer screening with low-dose CT (LDCT) has been shown to significantly reduce cancer-related mortality and is recommended by the United States Preventive Services Task Force (USPSTF). With pending recommendation in Europe and millions of patients enrolling in the program, deep learning algorithms could reduce the number of false positive and negative findings. Therefore, we evaluated the cost-effectiveness of using an AI algorithm for the initial screening scan using a Markov simulation. We found that AI support at initial screening is a cost-effective strategy up to a cost of USD 1240 per patient screening, given a willingness-to-pay of USD 100,000 per quality-adjusted life years (QALYs). Background: Lung cancer screening is already implemented in the USA and strongly recommended by European Radiological and Thoracic societies as well. Upon implementation, the total number of thoracic computed tomographies (CT) is likely to rise significantly. As shown in previous studies, modern artificial intelligence-based algorithms are on-par or even exceed radiologist's performance in lung nodule detection and classification. Therefore, the aim of this study was to evaluate the cost-effectiveness of an AI-based system in the context of baseline lung cancer screening. Methods: In this retrospective study, a decision model based on Markov simulation was developed to estimate the quality-adjusted life-years (QALYs) and lifetime costs of the diagnostic modalities. Literature research was performed to determine model input parameters. Model uncertainty and possible costs of the AI-system were assessed using deterministic and probabilistic sensitivity analysis. Results: In the base case scenario CT + AI resulted in a negative incremental cost-effectiveness ratio (ICER) as compared to CT only, showing lower costs and higher effectiveness. Threshold analysis showed that the ICER remained negative up to a threshold of USD 68 for the AI support. The willingness-to-pay of USD 100,000 was crossed at a value of USD 1240. Deterministic and probabilistic sensitivity analysis showed model robustness for varying input parameters. Conclusion: Based on our results, the use of an AI-based system in the initial low-dose CT scan of lung cancer screening is a feasible diagnostic strategy from a cost-effectiveness perspective. [ABSTRACT FROM AUTHOR]
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- 2022
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23. Borderline-resectable pancreatic adenocarcinoma: Contour irregularity of the venous confluence in pre-operative computed tomography predicts histopathological infiltration
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Kaissis, Georgios A., Lohöfer, Fabian K., Ziegelmayer, Sebastian, Danner, Julia, Jäger, Carsten, Schirren, Rebekka, Ankerst, Donna, Ceyhan, Güralp O., Friess, Helmut, Rummeny, Ernst J., Weichert, Wilko, and Braren, Rickmer F.
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Clinical Oncology ,Male ,Adjuvant Chemotherapy ,Cardiovascular Procedures ,Science ,Cancer Treatment ,Surgical and Invasive Medical Procedures ,Vascular Surgery ,Sensitivity and Specificity ,Veins ,Pancreaticoduodenectomy ,Cancer Chemotherapy ,Drug Therapy ,Radiologists ,Medicine and Health Sciences ,Chemotherapy ,Humans ,Medical Personnel ,Portal Veins ,Retrospective Studies ,Surgical Resection ,Pharmaceutics ,Biology and Life Sciences ,Tumor Resection ,Pancreatic Neoplasms ,Professions ,Surgical Oncology ,Oncology ,People and Places ,Cardiovascular Anatomy ,Blood Vessels ,Medicine ,Population Groupings ,Female ,Anatomy ,Clinical Medicine ,Tomography, X-Ray Computed ,Research Article ,Carcinoma, Pancreatic Ductal - Abstract
PurposeThe purpose of the current study was to compare CT-signs of portal venous confluence infiltration for actual histopathological infiltration of the vein or the tumor/vein interface (TVI) in borderline resectable pancreatic ductal adenocarcinoma (PDAC).Methods and materials101 patients with therapy-naïve, primarily resected PDAC of the pancreatic head without arterial involvement were evaluated. The portal venous confluence was assessed for contour irregularity (defined as infiltration) and degree of contact. The sensitivity and specificity of contour irregularity versus tumor to vein contact >180° as well as the combination of the signs for tumor cell infiltration of the vessel wall or TVI was calculated. Overall survival (OS) was compared between groups.ResultsSensitivity and specificity of contour irregularity for identification of tumor infiltration of the portal venous confluence or the TVI was higher compared to tumor to vessel contact >180° for tumor cell infiltration (96%/79% vs. 91%/38% respectively, p180°/ both signs had significantly worse overall survival (16.2 vs. 26.5 months/ 17.9 vs. 37.4 months/ 18.5 vs. 26.5 months respectively, all pConclusionPortal venous confluence contour irregularity is a strong predictor of actual tumor cell infiltration of the vessel wall or the TVI and should be noted as such in radiological reports.
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- 2019
24. Beyond the d-dimer – Machine-learning assisted pre-test probability evaluation in patients with suspected pulmonary embolism and elevated d-dimers.
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Gawlitza, Joshua, Ziegelmayer, Sebastian, Wilkens, Heinrike, Jagoda, Philippe, Raczeck, Paul, Buecker, Arno, and Stroeder, Jonas
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PULMONARY embolism , *FIBRIN fragment D , *CAUSES of death , *PROBABILITY theory , *BLOOD testing , *MACHINE learning - Abstract
Acute pulmonary embolism (PE) is a leading cardiovascular cause of death, resembling a common indication for emergency computed tomography (CT). Nonetheless, in clinical routine most CTs performed for suspicion of PE excluded the suspected diagnosis. As patients with low to intermediate risk for PE are triaged according to the d-dimer, its relatively low specifity and widespread elevation among elderly might be an underlying issue. Aim of this study was to find potential predictors based on initial emergency blood tests in patients with elevated d-dimers and suspected PE to further increase pre-test probability. In this retrospective study all patients at the local university hospital's emergency room from 2009 to 2019 with suspected PE, emergency blood testing and CT were included. Cluster analysis was performed to separate groups with distinct laboratory parameter profiles and PE frequencies were compared. Machine learning algorithms were trained on the groups to predict individual PE probability based on emergency laboratory parameters. Overall, PE frequency among the 2045 analyzed patients was 41%. Three clusters with significant differences (p ≤ 0.05) in PE frequency were identified: C1 showed a PE frequency of 43%, C2 40% and C3 33%. Laboratory parameter profiles (e.g. creatinine) differed significantly between clusters (p ≤ 0.0001). Both logistic regression and support-vector machines were able to predict clusters with an accuracy of over 90%. Initial blood parameters seem to enable further differentiation of patients with suspected PE and elevated d-dimers to raise pre-test probability of PE. Machine-learning-based prediction models might help to further narrow down CT indications in the future. • Emergency laboratory parameters can predict lower embolism probabilities. • 24% fewer embolism cases in one cluster despite elevated d-dimers. • Trained models allow for increased pre-test probability of pulmonary embolism. [ABSTRACT FROM AUTHOR]
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- 2021
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25. Efficient, high-performance semantic segmentation using multi-scale feature extraction.
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Knolle, Moritz, Kaissis, Georgios, Jungmann, Friederike, Ziegelmayer, Sebastian, Sasse, Daniel, Makowski, Marcus, Rueckert, Daniel, and Braren, Rickmer
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DEEP learning ,MAGNETIC resonance imaging ,FEATURE extraction ,COMPUTED tomography ,ARTIFICIAL neural networks ,CENTRAL processing units ,GRAPHICS processing units ,ARTIFICIAL intelligence in medicine - Abstract
The success of deep learning in recent years has arguably been driven by the availability of large datasets for training powerful predictive algorithms. In medical applications however, the sensitive nature of the data limits the collection and exchange of large-scale datasets. Privacy-preserving and collaborative learning systems can enable the successful application of machine learning in medicine. However, collaborative protocols such as federated learning require the frequent transfer of parameter updates over a network. To enable the deployment of such protocols to a wide range of systems with varying computational performance, efficient deep learning architectures for resource-constrained environments are required. Here we present MoNet, a small, highly optimized neural-network-based segmentation algorithm leveraging efficient multi-scale image features. MoNet is a shallow, U-Net-like architecture based on repeated, dilated convolutions with decreasing dilation rates. We apply and test our architecture on the challenging clinical tasks of pancreatic segmentation in computed tomography (CT) images as well as brain tumor segmentation in magnetic resonance imaging (MRI) data. We assess our model's segmentation performance and demonstrate that it provides performance on par with compared architectures while providing superior out-of-sample generalization performance, outperforming larger architectures on an independent validation set, while utilizing significantly fewer parameters. We furthermore confirm the suitability of our architecture for federated learning applications by demonstrating a substantial reduction in serialized model storage requirement as a surrogate for network data transfer. Finally, we evaluate MoNet's inference latency on the central processing unit (CPU) to determine its utility in environments without access to graphics processing units. Our implementation is publicly available as free and open-source software. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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26. [18F]FDG PET/MRI enables early chemotherapy response prediction in pancreatic ductal adenocarcinoma.
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Harder, Felix N., Jungmann, Friederike, Kaissis, Georgios A., Lohöfer, Fabian K., Ziegelmayer, Sebastian, Havel, Daniel, Quante, Michael, Reichert, Maximillian, Schmid, Roland M., Demir, Ihsan Ekin, Friess, Helmut, Wildgruber, Moritz, Siveke, Jens, Muckenhuber, Alexander, Steiger, Katja, Weichert, Wilko, Rauscher, Isabel, Eiber, Matthias, Makowski, Marcus R., and Braren, Rickmer F.
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NEOADJUVANT chemotherapy ,FISHER exact test ,MAGNETIC resonance imaging ,CANCER chemotherapy ,ADENOCARCINOMA ,CONTRAST-enhanced magnetic resonance imaging - Abstract
Purpose: In this prospective exploratory study, we evaluated the feasibility of [
18 F]fluorodeoxyglucose ([18 F]FDG) PET/MRI-based chemotherapy response prediction in pancreatic ductal adenocarcinoma at two weeks upon therapy onset. Material and methods: In a mixed cohort, seventeen patients treated with chemotherapy in neoadjuvant or palliative intent were enrolled. All patients were imaged by [18 F]FDG PET/MRI before and two weeks after onset of chemotherapy. Response per RECIST1.1 was then assessed at 3 months [18 F]FDG PET/MRI-derived parameters (MTV50% , TLG50% , MTV2.5 , TLG2.5 , SUVmax , SUVpeak , ADCmax , ADCmean and ADCmin ) were assessed, using multiple t-test, Man–Whitney-U test and Fisher's exact test for binary features. Results: At 72 ± 43 days, twelve patients were classified as responders and five patients as non-responders. An increase in ∆MTV50% and ∆ADC (≥ 20% and 15%, respectively) and a decrease in ∆TLG50% (≤ 20%) at 2 weeks after chemotherapy onset enabled prediction of responders and non-responders, respectively. Parameter combinations (∆TLG50% and ∆ADCmax or ∆MTV50% and ∆ADCmax ) further improved discrimination. Conclusion: Multiparametric [18 F]FDG PET/MRI-derived parameters, in particular indicators of a change in tumor glycolysis and cellularity, may enable very early chemotherapy response prediction. Further prospective studies in larger patient cohorts are recommended to their clinical impact. [ABSTRACT FROM AUTHOR]- Published
- 2021
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27. A machine learning algorithm predicts molecular subtypes in pancreatic ductal adenocarcinoma with differential response to gemcitabine-based versus FOLFIRINOX chemotherapy.
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Kaissis, Georgios, Ziegelmayer, Sebastian, Lohöfer, Fabian, Steiger, Katja, Algül, Hana, Muckenhuber, Alexander, Yen, Hsi-Yu, Rummeny, Ernst, Friess, Helmut, Schmid, Roland, Weichert, Wilko, Siveke, Jens T., and Braren, Rickmer
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PROGRESSION-free survival , *MACHINE learning , *CANCER chemotherapy , *ADENOCARCINOMA , *IMMUNOSTAINING , *REGRESSION analysis - Abstract
Purpose: Development of a supervised machine-learning model capable of predicting clinically relevant molecular subtypes of pancreatic ductal adenocarcinoma (PDAC) from diffusion-weighted-imaging-derived radiomic features. Methods: The retrospective observational study assessed 55 surgical PDAC patients. Molecular subtypes were defined by immunohistochemical staining of KRT81. Tumors were manually segmented and 1606 radiomic features were extracted with PyRadiomics. A gradient-boosted-tree algorithm was trained on 70% of the patients (N = 28) and tested on 30% (N = 17) to predict KRT81+ vs. KRT81- tumor subtypes. A gradient-boosted survival regression model was fit to the disease-free and overall survival data. Chemotherapy response and survival were assessed stratified by subtype and radiomic signature. Radiomic feature importance was ranked. Results: The mean±STDEV sensitivity, specificity and ROC-AUC were 0.90±0.07, 0.92±0.11, and 0.93±0.07, respectively. The mean±STDEV concordance indices between the disease-free and overall survival predicted by the model based on the radiomic parameters and actual patient survival were 0.76±0.05 and 0.71±0.06, respectively. Patients with a KRT81+ subtype experienced significantly diminished median overall survival compared to KRT81- patients (7.0 vs. 22.6 months, HR 4.03, log-rank-test P = <0.001) and a significantly improved response to gemcitabine-based chemotherapy over FOLFIRINOX (10.14 vs. 3.8 months median overall survival, HR 2.33, P = 0.037) compared to KRT81- patients, who responded significantly better to FOLFIRINOX over gemcitabine-based treatment (30.8 vs. 13.4 months median overall survival, HR 2.41, P = 0.027). Entropy was ranked as the most important radiomic feature. Conclusions: The machine-learning based analysis of radiomic features enables the prediction of subtypes of PDAC, which are highly relevant for disease-free and overall patient survival and response to chemotherapy. [ABSTRACT FROM AUTHOR]
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- 2019
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28. Development and Validation of a Deep Learning Algorithm to Differentiate Colon Carcinoma From Acute Diverticulitis in Computed Tomography Images.
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Ziegelmayer, Sebastian, Reischl, Stefan, Havrda, Hannah, Gawlitza, Joshua, Graf, Markus, Lenhart, Nicolas, Nehls, Nadja, Lemke, Tristan, Wilhelm, Dirk, Lohöfer, Fabian, Burian, Egon, Neumann, Philipp-Alexander, Makowski, Marcus, and Braren, Rickmer
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- 2023
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29. Prediction of Tumor Cellularity in Resectable PDAC from Preoperative Computed Tomography Imaging.
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Jungmann, Friederike, Kaissis, Georgios A., Ziegelmayer, Sebastian, Harder, Felix, Schilling, Clara, Yen, Hsi-Yu, Steiger, Katja, Weichert, Wilko, Schirren, Rebekka, Demir, Ishan Ekin, Friess, Helmut, Makowski, Markus R., Braren, Rickmer F., Lohöfer, Fabian K., and Sofuni, Atsushi
- Subjects
ADENOCARCINOMA ,PANCREATIC tumors ,STATISTICAL significance ,PREOPERATIVE period ,ONE-way analysis of variance ,CELL physiology ,MAGNETIC resonance imaging ,T-test (Statistics) ,COMPUTED tomography ,CELL lines - Abstract
Simple Summary: Pancreatic ductal adenocarcinoma (PDAC) remains a devastating disease. However, variations in tumor biology influence individual patient outcomes greatly. We previously showed a strong association between magnetic resonance imaging-based tumor cell estimates and patient survival. In this study we aimed to transfer this finding to more broadly applied computed tomography (CT) imaging for non-invasive risk stratification. We correlated in vivo CT imaging with histopathological analyses and could show a strong association between regional Hounsfield Units (HU) and tumor cellularity. In conclusion, our study suggests CT-based tumor cell estimates as a widely applicable way of non-invasive tumor cellularity characterization in PDAC. Background: PDAC remains a tumor entity with poor prognosis and a 5-year survival rate below 10%. Recent research has revealed invasive biomarkers, such as distinct molecular subtypes, predictive for therapy response and patient survival. Non-invasive prediction of individual patient outcome however remains an unresolved task. Methods: Discrete cellularity regions of PDAC resection specimen (n = 43) were analyzed by routine histopathological work up. Regional tumor cellularity and CT-derived Hounsfield Units (HU, n = 66) as well as iodine concentrations were regionally matched. One-way ANOVA and pairwise t-tests were performed to assess the relationship between different cellularity level in conventional, virtual monoenergetic 40 keV (monoE 40 keV) and iodine map reconstructions. Results: A statistically significant negative correlation between regional tumor cellularity in histopathology and CT-derived HU from corresponding image regions was identified. Radiological differentiation was best possible in monoE 40 keV CT images. However, HU values differed significantly in conventional reconstructions as well, indicating the possibility of a broad clinical application of this finding. Conclusion: In this study we establish a novel method for CT-based prediction of tumor cellularity for in-vivo tumor characterization in PDAC patients. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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30. Deep Convolutional Neural Network-Assisted Feature Extraction for Diagnostic Discrimination and Feature Visualization in Pancreatic Ductal Adenocarcinoma (PDAC) versus Autoimmune Pancreatitis (AIP).
- Author
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Ziegelmayer, Sebastian, Kaissis, Georgios, Harder, Felix, Jungmann, Friederike, Müller, Tamara, Makowski, Marcus, and Braren, Rickmer
- Subjects
- *
FEATURE extraction , *CONVOLUTIONAL neural networks , *FEATURE selection , *MACHINE learning , *PANCREATITIS - Abstract
The differentiation of autoimmune pancreatitis (AIP) and pancreatic ductal adenocarcinoma (PDAC) poses a relevant diagnostic challenge and can lead to misdiagnosis and consequently poor patient outcome. Recent studies have shown that radiomics-based models can achieve high sensitivity and specificity in predicting both entities. However, radiomic features can only capture low level representations of the input image. In contrast, convolutional neural networks (CNNs) can learn and extract more complex representations which have been used for image classification to great success. In our retrospective observational study, we performed a deep learning-based feature extraction using CT-scans of both entities and compared the predictive value against traditional radiomic features. In total, 86 patients, 44 with AIP and 42 with PDACs, were analyzed. Whole pancreas segmentation was automatically performed on CT-scans during the portal venous phase. The segmentation masks were manually checked and corrected if necessary. In total, 1411 radiomic features were extracted using PyRadiomics and 256 features (deep features) were extracted using an intermediate layer of a convolutional neural network (CNN). After feature selection and normalization, an extremely randomized trees algorithm was trained and tested using a two-fold shuffle-split cross-validation with a test sample of 20% (n = 18) to discriminate between AIP or PDAC. Feature maps were plotted and visual difference was noted. The machine learning (ML) model achieved a sensitivity, specificity, and ROC-AUC of 0.89 ± 0.11, 0.83 ± 0.06, and 0.90 ± 0.02 for the deep features and 0.72 ± 0.11, 0.78 ± 0.06, and 0.80 ± 0.01 for the radiomic features. Visualization of feature maps indicated different activation patterns for AIP and PDAC. We successfully trained a machine learning model using deep feature extraction from CT-images to differentiate between AIP and PDAC. In comparison to traditional radiomic features, deep features achieved a higher sensitivity, specificity, and ROC-AUC. Visualization of deep features could further improve the diagnostic accuracy of non-invasive differentiation of AIP and PDAC. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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31. Multiparametric Modelling of Survival in Pancreatic Ductal Adenocarcinoma Using Clinical, Histomorphological, Genetic and Image-Derived Parameters.
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Kaissis, Georgios A., Jungmann, Friederike, Ziegelmayer, Sebastian, Lohöfer, Fabian K., Harder, Felix N., Schlitter, Anna Melissa, Muckenhuber, Alexander, Steiger, Katja, Schirren, Rebekka, Friess, Helmut, Schmid, Roland, Weichert, Wilko, Makowski, Marcus R., and Braren, Rickmer F.
- Subjects
PROPORTIONAL hazards models ,P16 gene ,ADENOCARCINOMA ,FORECASTING - Abstract
Rationale: Pancreatic ductal adenocarcinoma (PDAC) remains a tumor entity of exceptionally poor prognosis, and several biomarkers are under current investigation for the prediction of patient prognosis. Many studies focus on promoting newly developed imaging biomarkers without a rigorous comparison to other established parameters. To assess the true value and leverage the potential of all efforts in this field, a multi-parametric evaluation of the available biomarkers for PDAC survival prediction is warranted. Here we present a multiparametric analysis to assess the predictive value of established parameters and the added contribution of newly developed imaging features such as biomarkers for overall PDAC patient survival. Methods: 103 patients with resectable PDAC were retrospectively enrolled. Clinical and histopathological data (age, sex, chemotherapy regimens, tumor size, lymph node status, grading and resection status), morpho-molecular and genetic data (tumor morphology, molecular subtype, tp53, kras, smad4 and p16 genetics), image-derived features and the combination of all parameters were tested for their prognostic strength based on the concordance index (CI) of multivariate Cox proportional hazards survival modelling after unsupervised machine learning preprocessing. Results: The average CIs of the out-of-sample data were: 0.63 for the clinical and histopathological features, 0.53 for the morpho-molecular and genetic features, 0.65 for the imaging features and 0.65 for the combined model including all parameters. Conclusions: Imaging-derived features represent an independent survival predictor in PDAC and enable the multiparametric, machine learning-assisted modelling of postoperative overall survival with a high performance compared to clinical and morpho-molecular/genetic parameters. We propose that future studies systematically include imaging-derived features to benchmark their additive value when evaluating biomarker-based model performance. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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32. Image-Based Molecular Phenotyping of Pancreatic Ductal Adenocarcinoma.
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Kaissis, Georgios A., Ziegelmayer, Sebastian, Lohöfer, Fabian K., Harder, Felix N., Jungmann, Friederike, Sasse, Daniel, Muckenhuber, Alexander, Yen, Hsi-Yu, Steiger, Katja, Siveke, Jens, Friess, Helmut, Schmid, Roland, Weichert, Wilko, Makowski, Marcus R., and Braren, Rickmer F.
- Subjects
- *
RECEIVER operating characteristic curves , *PANCREATIC cancer , *ADENOCARCINOMA , *CLASSIFICATION algorithms - Abstract
To bridge the translational gap between recent discoveries of distinct molecular phenotypes of pancreatic cancer and tangible improvements in patient outcome, there is an urgent need to develop strategies and tools informing and improving the clinical decision process. Radiomics and machine learning approaches can offer non-invasive whole tumor analytics for clinical imaging data-based classification. The retrospective study assessed baseline computed tomography (CT) from 207 patients with proven pancreatic ductal adenocarcinoma (PDAC). Following expert level manual annotation, Pyradiomics was used for the extraction of 1474 radiomic features. The molecular tumor subtype was defined by immunohistochemical staining for KRT81 and HNF1a as quasi-mesenchymal (QM) vs. non-quasi-mesenchymal (non-QM). A Random Forest machine learning algorithm was developed to predict the molecular subtype from the radiomic features. The algorithm was then applied to an independent cohort of histopathologically unclassifiable tumors with distinct clinical outcomes. The classification algorithm achieved a sensitivity, specificity and ROC-AUC (area under the receiver operating characteristic curve) of 0.84 ± 0.05, 0.92 ± 0.01 and 0.93 ± 0.01, respectively. The median overall survival for predicted QM and non-QM tumors was 16.1 and 20.9 months, respectively, log-rank-test p = 0.02, harzard ratio (HR) 1.59. The application of the algorithm to histopathologically unclassifiable tumors revealed two groups with significantly different survival (8.9 and 39.8 months, log-rank-test p < 0.001, HR 4.33). The machine learning-based analysis of preoperative (CT) imaging allows the prediction of molecular PDAC subtypes highly relevant for patient survival, allowing advanced pre-operative patient stratification for precision medicine applications. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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33. Evaluation of GPT-4's Chest X-Ray Impression Generation: A Reader Study on Performance and Perception.
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Ziegelmayer S, Marka AW, Lenhart N, Nehls N, Reischl S, Harder F, Sauter A, Makowski M, Graf M, and Gawlitza J
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- Humans, X-Rays, Radiography, Benchmarking, Perception, Radiology
- Abstract
Exploring the generative capabilities of the multimodal GPT-4, our study uncovered significant differences between radiological assessments and automatic evaluation metrics for chest x-ray impression generation and revealed radiological bias., (©Sebastian Ziegelmayer, Alexander W Marka, Nicolas Lenhart, Nadja Nehls, Stefan Reischl, Felix Harder, Andreas Sauter, Marcus Makowski, Markus Graf, Joshua Gawlitza. Originally published in the Journal of Medical Internet Research (https://www.jmir.org), 22.12.2023.)
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- 2023
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34. High-Resolution, High b-Value Computed Diffusion-Weighted Imaging Improves Detection of Pancreatic Ductal Adenocarcinoma.
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Harder FN, Jung E, McTavish S, Van AT, Weiss K, Ziegelmayer S, Gawlitza J, Gouder P, Kamal O, Makowski MR, Lohöfer FK, Karampinos DC, and Braren RF
- Abstract
Background: Our purpose was to investigate the potential of high-resolution, high b-value computed DWI (cDWI) in pancreatic ductal adenocarcinoma (PDAC) detection., Materials and Methods: We retrospectively enrolled 44 patients with confirmed PDAC. Respiratory-triggered, diffusion-weighted, single-shot echo-planar imaging (ss-EPI) with both conventional (i.e., full field-of-view, 3 × 3 × 4 mm voxel size, b = 0, 50, 300, 600 s/mm
2 ) and high-resolution (i.e., reduced field-of-view, 2.5 × 2.5 × 3 mm voxel size, b = 0, 50, 300, 600, 1000 s/mm2 ) imaging was performed for suspected PDAC. cDWI datasets at b = 1000 s/mm2 were generated for the conventional and high-resolution datasets. Three radiologists were asked to subjectively rate (on a Likert scale of 1-4) the following metrics: image quality, lesion detection and delineation, and lesion-to-pancreas intensity relation. Furthermore, the following quantitative image parameters were assessed: apparent signal-to-noise ratio (aSNR), contrast-to-noise ratio (aCNR), and lesion-to-pancreas contrast ratio (CR)., Results: High-resolution, high b-value computed DWI (r-cDWI1000) enabled significant improvement in lesion detection and a higher incidence of a high lesion-to-pancreas intensity relation (type 1, clear hyperintense) compared to conventional high b-value computed and high-resolution high b-value acquired DWI (f-cDWI1000 and r-aDWI1000, respectively). Image quality was rated inferior in the r-cDWI1000 datasets compared to r-aDWI1000. Furthermore, the aCNR and CR were higher in the r-cDWI1000 datasets than in f-cDWI1000 and r-aDWI1000., Conclusion: High-resolution, high b-value computed DWI provides significantly better visualization of PDAC compared to the conventional high b-value computed and high-resolution high b-value images acquired by DWI.- Published
- 2022
- Full Text
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