168 results on '"Zhang, Jia-Yong"'
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2. Mitochondrial gene expression in different organs of Hoplobatrachus rugulosus from China and Thailand under low-temperature stress
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Jin, Wan-Ting, Guan, Jia-Yin, Dai, Xin-Yi, Wu, Gong-Ji, Zhang, Le-Ping, Storey, Kenneth B., Zhang, Jia-Yong, Zheng, Rong-Quan, and Yu, Dan-Na
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- 2022
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3. Neuroprotective Effects of Early Brain Injury after Subarachnoid Hemorrhage in Rats by Calcium Channel Mediating Hydrogen Sulfide
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Duan, Hong-Zhou, Wu, Chong-Wei, Shen, Sheng-Li, Zhang, Jia-Yong, and Li, Liang
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- 2021
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4. Differential Mitochondrial Genome Expression of Four Hylid Frog Species under Low-Temperature Stress and Its Relationship with Amphibian Temperature Adaptation.
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Hong, Yue-Huan, Yuan, Ya-Ni, Li, Ke, Storey, Kenneth B., Zhang, Jia-Yong, Zhang, Shu-Sheng, and Yu, Dan-Na
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MITOCHONDRIAL DNA ,HYLIDAE ,GENE expression ,BIOLOGICAL extinction ,BODY temperature regulation ,EXTREME weather ,COLD adaptation ,PHYLOGEOGRAPHY - Abstract
Extreme weather poses huge challenges for animals that must adapt to wide variations in environmental temperature and, in many cases, it can lead to the local extirpation of populations or even the extinction of an entire species. Previous studies have found that one element of amphibian adaptation to environmental stress involves changes in mitochondrial gene expression at low temperatures. However, to date, comparative studies of gene expression in organisms living at extreme temperatures have focused mainly on nuclear genes. This study sequenced the complete mitochondrial genomes of five Asian hylid frog species: Dryophytes japonicus, D. immaculata, Hyla annectans, H. chinensis and H. zhaopingensis. It compared the phylogenetic relationships within the Hylidae family and explored the association between mitochondrial gene expression and evolutionary adaptations to cold stress. The present results showed that in D. immaculata, transcript levels of 12 out of 13 mitochondria genes were significantly reduced under cold exposure (p < 0.05); hence, we put forward the conjecture that D. immaculata adapts by entering a hibernation state at low temperature. In H. annectans, the transcripts of 10 genes (ND1, ND2, ND3, ND4, ND4L, ND5, ND6, COX1, COX2 and ATP8) were significantly reduced in response to cold exposure, and five mitochondrial genes in H. chinensis (ND1, ND2, ND3, ND4L and ATP6) also showed significantly reduced expression and transcript levels under cold conditions. By contrast, transcript levels of ND2 and ATP6 in H. zhaopingensis were significantly increased at low temperatures, possibly related to the narrow distribution of this species primarily at low latitudes. Indeed, H. zhaopingensis has little ability to adapt to low temperature (4 °C), or maybe to enter into hibernation, and it shows metabolic disorder in the cold. The present study demonstrates that the regulatory trend of mitochondrial gene expression in amphibians is correlated with their ability to adapt to variable climates in extreme environments. These results can predict which species are more likely to undergo extirpation or extinction with climate change and, thereby, provide new ideas for the study of species extinction in highly variable winter climates. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Comparative Mitogenome of Phylogenetic Relationships and Divergence Time Analysis within Potamanthidae (Insecta: Ephemeroptera).
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Guo, Zhi-Qiang, Gao, Ya-Jie, Chen, Yu-Xin, Zhan, Le-Mei, Storey, Kenneth B., Yu, Dan-Na, and Zhang, Jia-Yong
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PLIOCENE Epoch ,MAYFLIES ,MIOCENE Epoch ,INSECTS ,MITOCHONDRIAL DNA - Abstract
Simple Summary: As one of the burrowing mayfly groups with large mandibular tusks, the phylogenetic relationships within Potamanthidae are always controversial. There are at least two opposite hypotheses for mayfly grouping: Potamanthidae + (Ephemeridae + Polymitarcyidae) and (Potamanthidae + Ephemeridae) + Polymitarcyidae. Because of the indeterminate origin time of this group, the present study aimed to reconstruct the phylogenetic relationship and explore the origin time of Potamanthidae based on mitochondrial (mt) genomes. In addition, the protein-coding genes (PCGs) of these mt genomes may undergo positive selection when these species live in low-temperature environments. Potamanthidae belongs to the superfamily Ephemeroidea but has no complete mt genome released in the NCBI (except for two unchecked and one partial mt genome). Since the sister clade to Potamanthidae has always been controversial, we sequenced seven mt genomes of Potamanthidae (two species from Rhoenanthus and five species from Potamanthus) in order to rebuild the phylogenetic relationships of Potamanthidae in this study. The divergence time of Potamanthidae was also investigated by utilizing five fossil calibration points because of the indeterminate origin time. In addition, because Rhoenanthus coreanus and Potamanthus luteus are always in low-temperature environments, we aimed to explore whether these two species were under positive selection at the mt genome level. Amongst the 13 PCGs, CGA was used as the start codon in COX1, whereas other genes conformed to initiating with an ATN start codon. From this analysis, UUA (L), AUU (I), and UUU (F) had the highest usage. Furthermore, the DHU arm was absent in the secondary structure of S1 in all species. By combining the 13 PCGs and 2 rRNAs, we reconstructed the phylogenetic relationship of Potamanthidae within Ephemeroptera. The monophyly of Potamanthidae and the monophyly of Rhoenanthus and Potamanthus were supported in the results. The phylogenetic relationship of Potamanthidae + (Ephemeridae + Polymitarcyidae) was also recovered with a high prior probability. The divergence times of Potamanthidae were traced to be 90.44 Mya (95% HPD, 62.80–121.74 Mya), and the divergence times of Rhoenanthus and Potamanthus originated at approximately 64.77 Mya (95% HPD, 43.82–88.68 Mya), thus belonging to the late Pliocene Epoch or early Miocene Epoch. In addition, the data indicated that R. coreanus was under negative selection and that ATP8 and ND2 in Potamanthidae had a high evolutionary rate. [ABSTRACT FROM AUTHOR]
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- 2024
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6. The Phylogenetic Relationship of Lamiinae (Coleoptera: Cerambycidae) Using Mitochondrial Genomes.
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Li, Ke, Yu, Sheng-Wu, Hu, Hao, Feng, Yu-Feng, Storey, Kenneth B., Ma, Yue, Zhang, Jia-Yong, and Yu, Dan-Na
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MITOCHONDRIAL DNA ,CERAMBYCIDAE ,MITOCHONDRIA ,TANDEM repeats ,NUCLEOTIDE sequencing ,BEETLES ,MOLECULAR phylogeny ,GENOMES - Abstract
Simple Summary: Lamiinae is the largest subfamily among the Cerambycidae (longhorn beetles), and its members are distributed worldwide. The monophyly of Lamiinae is generally recognized, but there are still diverse ideas as to whether the tribes belonging to Lamiinae are monophylic. Ambiguous classification boundaries and the existence of synonyms are major issues leading to controversies over Lamiinae classification. It is not enough to conduct research solely on the morphological characteristics and simple molecular loci of longhorn beetles. Mitochondrial genomes have proven to be reliable markers and can shed more light on phylogenetic relationships among Lamiinae. The present study resolved infra-subfamilial relationships among Lamiinae and provides more mitochondrial data for further phylogenetic research on longhorn beetles. Lamiinae is the largest subfamily of the Cerambycidae (longhorn beetles), with approximately 21,863 described species. Previous phylogenetic studies of Lamiinae showed that this subfamily was monophyletic, but the relationship between the tribes of Lamiinae is still controversial. Partial molecular data and species morphological characteristics are not sufficient to resolve species phylogenetic studies perfectly. At the same time, the full mitochondrial genome contains more comprehensive genetic data. Benefiting from the development of next-generation sequencing (NGS), mitochondrial genomes can be easily acquired and used as reliable molecular markers to investigate phylogenetic relationships within Cerambycidae. Using NGS technology, we obtained 11 mitochondrial genome sequences of Lamiinae species. Based on this newly generated mitochondrial genome dataset matrix, we reconstructed the phylogeny of Lamiinae. The Bayesian Inference and Maximum Likelihood analyses strongly support the monophyly of four tribes (Lamiini, Batocerini, Mesosini, and Saperdini), whereas the tribe Acanthocinini was identified as paraphyletic. Other mitochondrial structural features were also observed: the start codon in the nad1 gene of all 11 mitochondrial genomes is TTG; 17–22 bp intergenic spacers (IGS) with a 'TACTA' motif were found between trnS2 and nad1. Moreover, two long IGS were found in Mesosa myops and Batocera sp. Tandem repeats were found in the IGS of Batocera sp. [ABSTRACT FROM AUTHOR]
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- 2024
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7. How Does Mitochondrial Protein-Coding Gene Expression in Fejervarya kawamurai (Anura: Dicroglossidae) Respond to Extreme Temperatures?
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Wang, Jing-Yan, Zhang, Li-Hua, Hong, Yue-Huan, Cai, Ling-Na, Storey, Kenneth B., Zhang, Jia-Yong, Zhang, Shu-Sheng, and Yu, Dan-Na
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MITOCHONDRIAL DNA ,GENE expression ,MITOCHONDRIA ,ANURA ,CELL physiology ,MOLECULAR phylogeny ,PADDY fields - Abstract
Simple Summary: The tropical and subtropical paddy frog, Fejervarya kawamurai (Anura: Dicroglossidae), is a common and widespread species in Asia. Amphibians can adapt to small changes in climate, but extreme temperature changes can lead to metabolic abnormalities affecting numerous cell functions. Damage or disruption of mitochondrial respiratory chain complexes can be lethal. The present study characterizes the mitochondrial genome of F. kawamurai to evaluate its evolutionary relationship within Dicroglossidae and to analyze the effects of extreme temperature change on mitochondrial gene expression of proteins involved in oxidative phosphorylation. Unusual climates can lead to extreme temperatures. Fejervarya kawamurai, one of the most prevalent anurans in the paddy fields of tropical and subtropical regions in Asia, is sensitive to climate change. The present study focuses primarily on a single question: how do the 13 mitochondrial protein-coding genes (PCGs) respond to extreme temperature change compared with 25 °C controls? Thirty-eight genes including an extra tRNA-Met gene were identified and sequenced from the mitochondrial genome of F. kawamurai. Evolutionary relationships were assessed within the Dicroglossidae and showed that Dicroglossinae is monophyletic and F. kawamurai is a sister group to the clade of (F. multistriata + F. limnocharis). Transcript levels of mitochondrial genes in liver were also evaluated to assess responses to 24 h exposure to low (2 °C and 4 °C) or high (40 °C) temperatures. Under 2 °C, seven genes showed significant changes in liver transcript levels, among which transcript levels of ATP8, ND1, ND2, ND3, ND4, and Cytb increased, respectively, and ND5 decreased. However, exposure to 4 °C for 24 h was very different in that the expressions of ten mitochondrial protein-coding genes, except ND1, ND3, and Cytb, were significantly downregulated. Among them, the transcript level of ND5 was most significantly downregulated, decreasing by 0.28-fold. Exposure to a hot environment at 40 °C for 24 h resulted in a marked difference in transcript responses with strong upregulation of eight genes, ranging from a 1.52-fold increase in ND4L to a 2.18-fold rise in Cytb transcript levels, although COI and ND5 were reduced to 0.56 and 0.67, respectively, compared with the controls. Overall, these results suggest that at 4 °C, F. kawamurai appears to have entered a hypometabolic state of hibernation, whereas its mitochondrial oxidative phosphorylation was affected at both 2 °C and 40 °C. The majority of mitochondrial PCGs exhibited substantial changes at all three temperatures, indicating that frogs such as F. kawamurai that inhabit tropical or subtropical regions are susceptible to ambient temperature changes and can quickly employ compensating adjustments to proteins involved in the mitochondrial electron transport chain. [ABSTRACT FROM AUTHOR]
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- 2023
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8. Phylogenetic relationships and divergence dating of Mantodea using mitochondrial phylogenomics.
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Ma, Yue, Zhang, Le‐Ping, Lin, Yi‐Jie, Yu, Dan‐Na, Storey, Kenneth B., and Zhang, Jia‐Yong
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MANTODEA ,PREDATORY insects ,MOLECULAR phylogeny ,CONVERGENT evolution ,BATS ,MITOCHONDRIA - Abstract
Mantodea is a predatory insect group, its members occupying a diverse array of widely distributed habitats. Praying mantis species utilize hunting strategies including remarkable mimicry and unique camouflage for hiding from natural enemies while catching their prey. The emergence of a "cyclopean ear" in mantises is thought to be a morphological innovation of the group, and an "arms race" with echolocating bats is one of the hypotheses put forward to account for the emergence of the mantis ear from a coevolutionary perspective. However, this hypothesis has not been rigorously tested because of a lack of robust higher‐level phylogeny and a detailed chronogram of Mantodea. Previous phylogenetic studies found an incongruence between traditional classification and molecular phylogenetics due to the convergent evolution of various ecomorphic strategies of the lineage. Here, we performed a comprehensive phylogenetic analysis of Mantodea based on data from 61 mitogenomes. Our analyses showed that the monophyly of Acanthopidae, Haaniidae, Nanomantidae, Miomantidae and Mantidea was supported. The newly updated Gonypetidae were paraphyletic, whereas Eremiaphilidae, Deroplatyidae and Toxoderidae were polyphyletic. Our molecular dating analyses inferred that Spinomantodea originated at ca. 149 Ma (Late Jurassic), whereas the origin of hearing mantises (Cernomantodea) was inferred as Early Cretaceous (119 Ma, 95% CI: 110–129 Ma). The molecular dating results indicated that the hearing organ in mantises did not arise in response to bat predation. Our study provides a robust framework for further evolutionary comparative studies of mantises. [ABSTRACT FROM AUTHOR]
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- 2023
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9. Phase diagrams of Na2SO4–MgSO4–CO(NH2)2–H2O system at 60 °C and their application
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Gong, Xue-Min, Qiao, Hong, Zhao, Bin, Zhang, Jia-Yong, and Cao, Ji-Lin
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- 2016
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10. Comparative study of two types of herbal capsules with different Epimedium species for the prevention of ovariectomised-induced osteoporosis in rats
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Chen, Shi-Hui, Wang, Xin-Luan, Zheng, Li-Zhen, Dai, Yi, Zhang, Jia-Yong, Guo, Bao-Lin, Yang, Zhi-Jun, Yao, Xin-Sheng, and Qin, Ling
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- 2016
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11. Two-Fold ND5 Genes, Three-Fold Control Regions, lncRNA, and the "Missing" ATP8 Found in the Mitogenomes of Polypedates megacephalus (Rhacophridae: Polypedates).
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Cai, Ling-Na, Zhang, Li-Hua, Lin, Yi-Jie, Wang, Jing-Yan, Storey, Kenneth B., Zhang, Jia-Yong, and Yu, Dan-Na
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MITOCHONDRIAL DNA ,PHYSIOLOGICAL effects of cold temperatures ,LINCRNA ,TANDEM repeats ,GENE expression ,GENOMICS - Abstract
Simple Summary: The spot-legged treefrog Polypedates megacephalus (Anura: Rhacophoridae) is widely distributed in Asia. In previous studies, it has been noted that the mitochondrial gene ATP8 has not been confidently annotated in any sequenced Polypedates to date. Duplications of control regions (CRs) are often observed in the tree frog family Rhacophoridae, and in most cases the copied CRs are highly similar to one another. This feature may lead to sequence assembly errors. Our findings are the first to detect two copies of the ND5 genes and three copies of the CRs in P. megacephalus by employing a "primer bridging" approach and allude to the presence of ATP8 via bioinformatic analyses and RT-qPCR. However, the question of whether the ATP8 is functional needs to be addressed in future studies. In prior research on the mitochondrial genome (mitogenome) of Polypedates megacephalus, the one copy of ND5 gene was translocated to the control region (CR) and the ATP8 gene was not found. Gene loss is uncommon among vertebrates. However, in this study, we resequenced the mitogenomes of P. megacephalus from different regions using a "primer bridging" approach with Sanger sequencing technologies, which revealed the "missing" ATP8 gene in P. megacephalus as well as three other previously published Polypedates. The mitogenome of this species was found to contain two copies of the ND5 genes and three copies of the control regions. Furthermore, multiple tandem repeats were identified in the control regions. Notably, we observed that there was no correlation between genetic divergence and geographic distance. However, using the mitogenome, gene expression analysis was performed via RT-qPCR of liver samples and it was thus determined that COIII, ND2, ND4, and ND6 were reduced to 0.64 ± 0.24, 0.55 ± 0.34, 0.44 ± 0.21 and 0.65 ± 0.17, respectively, under low-temperature stress (8 °C) as compared with controls (p < 0.05). Remarkably, the transcript of long non-coding RNA (lncRNA) between positions 8029 and 8612 decreased significantly with exposure to low-temperature stress (8 °C). Antisense ND6 gene expression showed a downward trend, but this was not significant. These results reveal that modulations of protein-coding mitochondrial genes and lncRNAs of P. megacephalus play a crucial role in the molecular response to cold stress. [ABSTRACT FROM AUTHOR]
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- 2023
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12. Copper-Catalyzed Enantioconvergent Radical C(sp3)–N Cross-Coupling of Activated Racemic Alkyl Halides with (Hetero)aromatic Amines under Ambient Conditions.
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Chen, Ji-Jun, Zhang, Jia-Yong, Fang, Jia-Heng, Du, Xuan-Yi, Xia, Hai-Dong, Cheng, Bin, Li, Nan, Yu, Zhang-Long, Bian, Jun-Qian, Wang, Fu-Li, Zheng, Jing-Jing, Liu, Wei-Long, Gu, Qiang-Shuai, Li, Zhong-Liang, and Liu, Xin-Yuan
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- 2023
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13. Nonvolatile tuning of the Rashba effect in the CuInP2S6/MoSSe/CuInP2S6 heterostructure.
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Huang, Hong-Fei, Dong, Yao-Jun, Yao, Yang, Zhang, Jia-Yong, Hao, Xiang, Gu, Han, and Wu, Yin-Zhong
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RASHBA effect ,VALENCE bands ,CHARGE transfer ,MAGNITUDE (Mathematics) - Abstract
The van der Waals sandwich heterostructure CuInP 2 S 6 / MoSSe / CuInP 2 S 6 (CIPS/MoSSe/CIPS) has first been employed as a prototype to tune the Rashba effect. By nonvolatile controlling of the orientation of the polarization of the top ferroelectric CIPS monolayer, it is confirmed that the Rashba effect can be switched on or off at the top position of the valence band (VB) around the Γ point. More significantly, we find that the Rashba coefficient increases by almost one order of magnitude for the "on" state as compared with the freestanding MoSSe monolayer. Based on the results of first-principle calculations, it is obtained that the enhancement of the Rashba effect results from the charge transfer from the top CIPS layer to the MoSSe layer or the bottom CIPS layer, and the lifting of the d -orbit band of the light Cu atom leads to the disappearance of Rashba spin splitting at the top of the VB around the Γ point. Furthermore, the polarization orientation of the bottom CIPS layer can greatly alter the bandgap of the sandwich structure. We hope the above nonvolatile and large amplitude tuning of the Rashba effect should be useful in the design of spintronic nano-devices. [ABSTRACT FROM AUTHOR]
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- 2020
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14. Enantioconvergent Cu-catalysed N-alkylation of aliphatic amines.
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Chen, Ji-Jun, Fang, Jia-Heng, Du, Xuan-Yi, Zhang, Jia-Yong, Bian, Jun-Qian, Wang, Fu-Li, Luan, Cheng, Liu, Wei-Long, Liu, Ji-Ren, Dong, Xiao-Yang, Li, Zhong-Liang, Gu, Qiang-Shuai, Dong, Zhe, and Liu, Xin-Yuan
- Abstract
Chiral amines are commonly used in the pharmaceutical and agrochemical industries1. The strong demand for unnatural chiral amines has driven the development of catalytic asymmetric methods1,2. Although the N-alkylation of aliphatic amines with alkyl halides has been widely adopted for over 100 years, catalyst poisoning and unfettered reactivity have been preventing the development of a catalyst-controlled enantioselective version3–5. Here we report the use of chiral tridentate anionic ligands to enable the copper-catalysed chemoselective and enantioconvergent N-alkylation of aliphatic amines with α-carbonyl alkyl chlorides. This method can directly convert feedstock chemicals, including ammonia and pharmaceutically relevant amines, into unnatural chiral α-amino amides under mild and robust conditions. Excellent enantioselectivity and functional-group tolerance were observed. The power of the method is demonstrated in a number of complex settings, including late-stage functionalization and in the expedited synthesis of diverse amine drug molecules. The current method indicates that multidentate anionic ligands are a general solution for overcoming transition-metal-catalyst poisoning.The chemoselective and enantioconvergent N-alkylation of aliphatic amines, including ammonia, is achieved using chiral tridentate anionic ligands and a copper catalyst; the method shows excellent enantioselectivity and functional-group tolerance. [ABSTRACT FROM AUTHOR]
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- 2023
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15. Characterization of Two Mitogenomes of Hyla sanchiangensis (Anura: Hylidae), with Phylogenetic Relationships and Selection Pressure Analyses of Hylidae.
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Hong, Yue-Huan, Huang, Hai-Ming, Wu, Lian, Storey, Kenneth B., Zhang, Jia-Yong, Zhang, Yong-Pu, and Yu, Dan-Na
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HYLIDAE ,ANURA ,CHLOROPLAST DNA ,TRANSFER RNA ,RIBOSOMAL RNA ,GLACIAL Epoch ,GENETIC distance - Abstract
Simple Summary: Hylidae is a rich family of Anura that is widely distributed across the world. Previous studies have shown that the Hyla and Dryophytos genera in the Hylidae used to belong to the same genus. The Eurasian species (including Hyla sanchiangensis) originated in North America and spread through the Beringian Land Bridge to Asia during the last ice age. Adaptation to low temperatures may require more energy expenditure. Mitochondria are the center of energy metabolism and, through oxidative phosphorylation, provide most of the ATP energy for the physiological and biochemical activities of the body. The mitogenome was used to investigate whether Hyla and Dryophytos genera are subject to positive selection. In addition, as a unique species in China, the distinction between Hyla sanchiangensis (Anura: Hylidae) and two different sites was also compared and analyzed in this paper. Hyla sanchiangensis (Anura: Hylidae) is endemic to China and is distributed across Anhui, Zhejiang, Fujian, Guangdong, Guangxi, Hunan, and Guizhou provinces. The mitogenomes of H. sanchiangensis from two different sites (Jinxiu, Guangxi, and Wencheng, Zhejiang) were sequenced. Phylogenetic analyses were conducted, including 38 mitogenomes of Hylidae from the NCBI database, and assessed the phylogenetic relationship of H. sanchiangensis within the analyzed dataset. Two mitogenomes of H. sanchiangensis showed the typical mitochondrial gene arrangement with 13 protein-coding genes (PCGs), two ribosomal RNA genes (12S rRNA and 16S rRNA), 22 transfer RNA (tRNA) genes, and one non-coding control region (D-loop). The lengths of the 12S rRNA and 16S rRNA genes from both samples (Jinxiu and Wencheng) were 933 bp and 1604 bp, respectively. The genetic distance (p-distance transformed into percent) on the basis of the mitogenomes (excluding the control region) of the two samples was calculated as 4.4%. Hyla sanchiangensis showed a close phylogenetic relationship with the clade of (H. annectans + H. tsinlingensis), which was supported by ML and BI analyses. In the branch-site model, five positive selection sites were found in the clade of Hyla and Dryophytes: Cytb protein (at position 316), ND3 protein (at position 85), and ND5 protein (at position 400) have one site, respectively, and two sites in ND4 protein (at positions 47 and 200). Based on the results, we hypothesized that the positive selection of Hyla and Dryophytes was due to their experience of cold stress in historical events, but more evidence is needed to support this conclusion. [ABSTRACT FROM AUTHOR]
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- 2023
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16. Complete mitochondrial genomes of Nanorana taihangnica and N. yunnanensis (Anura: Dicroglossidae) with novel gene arrangements and phylogenetic relationship of Dicroglossidae
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Zhang, Jia-Yong, Zhang, Le-Ping, Yu, Dan-Na, Storey, Kenneth B., and Zheng, Rong-Quan
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- 2018
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17. The Genetic Diversity and the Divergence Time in Extant Primitive Mayfly, Siphluriscus chinensis Ulmer, 1920 Using the Mitochondrial Genome.
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Tong, Yao, Shen, Chen-Yang, Zhao, Yu-Yang, Lin, Yi-Jie, Wu, Lian, Storey, Kenneth B., Yu, Dan-Na, and Zhang, Jia-Yong
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MITOCHONDRIAL DNA ,GENETIC variation ,GENETIC distance ,BAYESIAN field theory ,GENOMES ,MAYFLIES ,NEOGENE Period - Abstract
In this study, the mitochondrial (mt) genomes of Siphluriscus chinensis (Ephemeroptera: Siphluriscidae) were evaluated in specimens collected from two sites in China: Niutou Mountain, Zhejiang Province (S. chinensis NTS) and Leigong Mountain, Guizhou Province (S. chinensis LGS) and were successfully sequenced. The lengths of the mt genomes of S. chinensis NTS and S. chinensis LGS were 15,904 bp (ON729390) and 15,212 bp (ON729391), respectively. However, an in-depth comparison of the two mt genomes showed significant differences between the specimens collected from the two sites. A detailed analysis of the genetic distance between S. chinensis NTS and S. chinensis LGS was undertaken to further achieve an accurate delimitation of S. chinensis. The genetic distance between S. chinensis NTS and the other three species within Siphluriscidae was a high value, above 12.2%. The two mt genomes were used to reconstruct phylogenetic relationships and estimate divergence time. The results demonstrated robust differences between S. chinensis NTS and S. chinensis LGS, which revealed that a kind of cryptic species existed. Maximum likelihood (ML) and Bayesian inference (BI) analyses produced well-supported phylogenetic trees that showed evolutionary relationships between Siphluriscidae (((S. chinensis HQ875717 + S. chinensis MF352165) + S. chinensis LGS) + S. chinensis NTS). The most recent common ancestor (MRCA) of four species within Siphluriscidae began to diversify during the Neogene [11.80 million years ago (Mya); 95% highest posterior densities (HPD) = 6.17–19.28 Mya], and S. chinensis NTS was first to diverge from the branches of S. chinensis LGS. In short, based on mitochondrial genomes, our results showed that the specimens collected from Leigong Mountain, Guizhou Province (S. chinensis LGS) belonged to S. chinensis, and the specimens collected from Niutou Mountain, Zhejiang Province (S. chinensis NTS) were a cryptic species of S. chinensis. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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18. The Complete Mitochondrial Genomes of Three Sphenomorphinae Species (Squamata: Scincidae) and the Selective Pressure Analysis on Mitochondrial Genomes of Limbless Isopachys gyldenstolpei.
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Wu, Lian, Tong, Yao, Ayivi, Sam Pedro Galilee, Storey, Kenneth B., Zhang, Jia-Yong, and Yu, Dan-Na
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MITOCHONDRIAL DNA ,SKINKS ,SQUAMATA ,MITOCHONDRIA ,GENOMES ,SPECIES ,COLUBRIDAE ,PLANT mitochondria - Abstract
Simple Summary: Skinks are the most species-rich group of lizards and are widely distributed around the world. The family Scincidae (Reptilia: Lacertiformes) includes limbed and limbless representatives occupying diverse habitats and showing a range of morphologies. Both limbed and limbless skinks have unique locomotion patterns in their habitats. Locomotion is the process of energy consumption, of which different modes may have different energy demands. As the center of energy metabolism in organisms, mitochondria provide most of the energy for physiological and biochemical activities via oxidative phosphorylation. Here, we employed mitochondrial genomes to investigate potential selective pressures among limbless skinks. Isopachys gyldenstolpei, as a typical limbless skink, has a different locomotion pattern compared to a limbed skink. Thus, I. gyldenstolpei can be used to study whether limb loss has a positive selection on mitochondrial genes. Two typical limbed skinks, Sphenomorphus indicus and Tropidophorus hainanus, were included in this study to compare the selective pressure analysis on mitochondrial genomes. In addition, the phylogenetic relationships within Scincidae are also discussed. In order to adapt to diverse habitats, organisms often evolve corresponding adaptive mechanisms to cope with their survival needs. The species-rich family of Scincidae contains both limbed and limbless species, which differ fundamentally in their locomotor demands, such as relying on the movement of limbs or only body swing to move. Locomotion requires energy, and different types of locomotion have their own energy requirements. Mitochondria are the energy factories of living things, which provide a lot of energy for various physiological activities of organisms. Therefore, mitochondrial genomes could be tools to explore whether the limb loss of skinks are selected by adaptive evolution. Isopachys gyldenstolpei is a typical limbless skink. Here, we report the complete mitochondrial genomes of I. gyldenstolpei, Sphenomorphus indicus, and Tropidophorus hainanus. The latter two species were included as limbed comparator species to the limbless I. gyldenstolpei. The results showed that the full lengths of the mitochondrial genomes of I. gyldenstolpei, S. indicus, and T. hainanus were 17,210, 16,944, and 17,001 bp, respectively. Three mitochondrial genomes have typical circular double-stranded structures similar to other reptiles, including 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs, and the control region. Three mitochondrial genomes obtained in this study were combined with fifteen mitochondrially complete genomes of Scincidae in the NCBI database; the phylogenetic relationship between limbless I. gyldenstolpei and limbed skinks (S. indicus and T. hainanus) is discussed. Through BI and ML trees, Sphenomorphinae and Mabuyinae were monophyletic, while the paraphyly of Scincinae was also recovered. The limbless skink I. gyldenstolpei is closer to the species of Tropidophorus, which has formed a sister group with (T. hainanus + T. hangman). In the mitochondrial genome adaptations between limbless I. gyldenstolpei and limbed skinks, one positively selected site was found in the branch-site model analysis, which was located in ND2 (at position 28, BEB value = 0.907). Through analyzing the protein structure and function of the selected site, we found it was distributed in mitochondrial protein complex I. Positive selection of some mitochondrial genes in limbless skinks may be related to the requirement of energy to fit in their locomotion. Further research is still needed to confirm this conclusion though. [ABSTRACT FROM AUTHOR]
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- 2022
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19. Enantioselective Hydroxylation of Dihydrosilanes to Si‐Chiral Silanols Catalyzed by In Situ Generated Copper(II) Species.
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Yang, Wu, Liu, Lin, Guo, Jiandong, Wang, Shou‐Guo, Zhang, Jia‐Yong, Fan, Li‐Wen, Tian, Yu, Wang, Li‐Lei, Luan, Cheng, Li, Zhong‐Liang, He, Chuan, Wang, Xiaotai, Gu, Qiang‐Shuai, and Liu, Xin‐Yuan
- Subjects
SILANOLS ,HYDROXYLATION ,ALKYL bromides ,COPPER ,SPECIES - Abstract
Catalytic enantioselective hydroxylation of prochiral dihydrosilanes with water is expected to be a highly efficient way to access Si‐chiral silanols, yet has remained unknown up to date. Herein, we describe a strategy for realizing this reaction: using an alkyl bromide as a single‐electron transfer (SET) oxidant for invoking CuII species and chiral multidentate anionic N,N,P‐ligands for effective enantiocontrol. The reaction readily provides a broad range of Si‐chiral silanols with high enantioselectivity and excellent functional group compatibility. In addition, we manifest the synthetic potential by establishing two synthetic schemes for transforming the obtained products into Si‐chiral compounds with high structural diversity. Our preliminary mechanistic studies support a mechanism involving SET for recruiting chiral CuII species as the active catalyst and its subsequent σ‐metathesis with dihydrosilanes. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
20. The Genetic Diversity in Thereuonema tuberculata (Wood, 1862) (Scutigeromorpha: Scutigeridae) and the Phylogenetic Relationship of Scutigeromorpha Using the Mitochondrial Genome.
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Yang, Yong-Mei, Zhang, Li-Hua, Lin, Yi-Jie, Zheng, Yi-Meng, Jin, Wan-Ting, Storey, Kenneth B., Yu, Dan-Na, and Zhang, Jia-Yong
- Subjects
MITOCHONDRIAL DNA ,GENETIC variation ,GENETIC distance ,TANDEM repeats ,NUCLEOTIDE sequencing - Abstract
Simple Summary: The sequencing of mitochondrial genomes promotes the study of cryptic species and the phylogenetic relationship of species. Thus far, only one complete mitochondrial genome of Scutigeromorpha is available in the NCBI. In this study, four specimens of Thereuonema tuberculata (Scutigeromorpha: Scutigeridae), collected from four different localities of China, were identified, and the four mitochondrial genomes of those were sequenced and annotated. Based on the gene organization and genetic diversity of the mitochondrial genomes, we hypothesized that cryptic species could exist in T. tuberculata. We further constructed BI and ML phylogenetic trees to reveal the relationship of Scutigeromorpha. Based on morphological characteristics to make species identification, the cryptic species of the Scutigeromorpha can be greatly underestimated. The mitochondrial genome provides a desirable tool for the biological identifications and the discovery of the cryptic species. The capacity to acquire mitochondrial genome sequences has substantially improved in recent years using next-generation sequencing (NGS) technology. On the basis of the next-generation sequencing, we obtained four complete mitochondrial genomes of Thereuonema tuberculata (Wood, 1862) from Nanyang, Henan Province (NY), Nanchang, Jiangxi Province (NC), Jinan, Shandong Province (JN), and Dali, Yunnan Province (DL) in China with GenBank numbers OK513221, OL449685, ON058988 and ON058989, respectively. The lengths of the four mitochondrial genomes ranged from 14,903 to 14,909 bp. The composition and order of genes of the four mitochondrial genomes were identical to the published mitochondrial genome of Scutigera coleoptrata (Linnaeus, 1758) (Scutigeromorpha: Scutigerdae). It was the first time that the tandem repeats in the control region were detected in Scutigeromorpha. We also calculated the corrected pairwise genetic distance of four complete mitochondrial genomes of T. tuberculata, ranging from 7.7 to 15.2%. The results showed that the T.tuberculata NC belonged to the typical sample of T. tuberculata, and T. tuberculata DL was hypothesized as a cryptic species of T. tuberculata. Meanwhile, T. tuberculata NY and T. tuberculata JN were hypothesized as potential cryptic species of T. tuberculata in this study. In both BI and ML trees, the monophyly of Scutigeromorpha, Scolopendromorpha, Geophilomorpha, and Lithobiomorpha was forcefully advocated. Moreover, Scutigeromorpha was recovered as the sister clade of (Scolopendromorpha + (Lithobiomorpha + Geophilomorpha)). Four specimens of T. tuberculata were clustered into one clade, which was the sister to the clade of S. coleoptrata. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
21. Novel Mitochondrial Gene Rearrangement and Intergenic Regions Exist in the Mitochondrial Genomes from Four Newly Established Families of Praying Mantises (Insecta: Mantodea).
- Author
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Lin, Yi-Jie, Cai, Ling-Na, Zhao, Yu-Yang, Cheng, Hong-Yi, Storey, Kenneth B., Yu, Dan-Na, and Zhang, Jia-Yong
- Subjects
GENE rearrangement ,MANTODEA ,INSECTS ,MITOCHONDRIA ,CONVERGENT evolution ,GENOMES - Abstract
Simple Summary: Mantodea is regarded as an excellent material to study the gene rearrangements and large non-coding regions (LNCRs) in mitochondrial genomes. Meanwhile, as a result of the convergent evolution and parallelism, the gene rearrangements and LNCRs are specific to some taxonomic groups within Mantodea, which play an important role in phylogenetic relationship research. Nine mitochondrial genomes (mitogenomes) from four newly established families of praying mantises are obtained and annotated. Eight types of gene rearrangements, including four novel types of gene rearrangements in Mantodea, are detected, which can be explained by the tandem replication-random loss (TDRL) model. Moreover, one conserved motif between trnI-trnQ is detected in Toxoderidae. This study shed light on the formation mechanisms of these gene rearrangements and LNCRs in four newly established families of praying mantises. Long non-coding regions (NCRs) and gene rearrangements are commonly seen in mitochondrial genomes of Mantodea and are primarily focused on three regions: CR-I-Q-M-ND2, COX2-K-D-ATP8, and ND3-A-R-N-S-E-F-ND5. In this study, eight complete and one nearly complete mitochondrial genomes of praying mantises were acquired for the purpose of discussing mitochondrial gene rearrangements and phylogenetic relationships within Mantodea, primarily in the newly established families Haaniidae and Gonypetidae. Except for Heterochaeta sp. JZ-2017, novel mitochondrial gene arrangements were detected in Cheddikulama straminea, Sinomiopteryx graham, Pseudovates chlorophaea, Spilomantis occipitalis. Of note is the fact that one type of novel arrangement was detected for the first time in the Cyt b-S2-ND1 region. This could be reliably explained by the tandem replication-random loss (TDRL) model. The long NCR between trnT and trnP was generally found in Iridopteryginae and was similar to the ND4L or ND6 gene. Combined with gene rearrangements and intergenic regions, the monophyly of Haaniidae was supported, whereas the paraphyly of Gonypetidae was recovered. Furthermore, several synapomorphies unique to some clades were detected that conserved block sequences between trnI and trnQ and gaps between trnT and trnP in Toxoderidae and Iridopteryginae, respectively. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
22. The complete mitochondrial genome of Leptomantella tonkinae (Hebard, 1920) (Mantodea: Leptomantellidae) and its phylogeny.
- Author
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Lin, Yi-Jie, Zhao, Yu-Yang, Yang, Yong-Mei, Jin, Wan-Ting, Cai, Ling-Na, Storey, Kenneth B., Zhang, Jia-Yong, and Yu, Dan-Na
- Subjects
MITOCHONDRIAL DNA ,MANTODEA ,GENOMES ,TRANSFER RNA ,PHYLOGENY ,RIBOSOMAL RNA - Abstract
The complete mitochondrial (mt) genome of Leptomantella tonkinae (Hebard, 1920) was 15,527 bp in length and contained 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs, and one control region. The gene arrangement of mt genome of L. tonkinae was identical to the primitive mantis. The overall AT content of the mt genome was 74%. In ML and BI phylogenetic analyses, the monophyly of Leptomantellidae was robustly supported and the clade of Leptomantellidae is a sister clade to the group of (Gonypetidae+(Leptomantellidae+(Amorphoscelidae+Nanomantidae))). [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
23. Cryptic Species Exist in Vietnamella sinensis Hsu, 1936 (Insecta: Ephemeroptera) from Studies of Complete Mitochondrial Genomes.
- Author
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Tong, Yao, Wu, Lian, Ayivi, Sam Pedro Galilee, Storey, Kenneth B., Ma, Yue, Yu, Dan-Na, and Zhang, Jia-Yong
- Subjects
MAYFLIES ,GENETIC distance ,INSECTS ,GENOMES ,SPECIES ,MITOCHONDRIA ,CLONORCHIS sinensis - Abstract
Simple Summary: The family Vietnamellidae (Ephemeroptera) is one of the oldest insect families in the world. However, there are still controversies about the phylogenetic relationships among Vietnamellidae, Ephemerellidae, and Teloganodidae. The mitochondrial (mt) genome can be used to discuss phylogenetic relationships and cryptic species. We sequenced and annotated three complete mt genomes of Vietnamella sinensis from three different populations, identifying a cryptic species of V. sinensis and discuss the phylogenetic relationships of Vietnamellidae. Based on the genetic distance of the whole mt genomes, the phylogenetic relationship of three populations was uncovered and the divergence time of V. sinensis QY indicated that it was a cryptic species of V. sinensis. Ephemeroptera (Insecta: Pterygota) are widely distributed all over the world with more than 3500 species. During the last decade, the phylogenetic relationships within Ephemeroptera have been a hot topic of research, especially regarding the phylogenetic relationships among Vietnamellidae. In this study, three mitochondrial genomes from three populations of Vienamella sinensis collected from Tonglu (V. sinensis TL), Chun'an (V. sinensis CN), and Qingyuan (V. sinensis QY) in Zhejiang Province, China were compared to discuss the potential existence of cryptic species. We also established their phylogenetic relationship by combining the mt genomes of 69 Ephemeroptera downloaded from NCBI. The mt genomes of V. sinensis TL, V. sinensis CN, and V. sinensis QY showed the same gene arrangement with lengths of 15,674 bp, 15,674 bp, and 15,610 bp, respectively. Comprehensive analyses of these three mt genomes revealed significant differences in mt genome organization, genetic distance, and divergence time. Our results showed that the specimens collected from Chun'an and Tonglu in Zhejiang Province, China belonged to V. sinensis, and the specimens collected from Qingyuan, Zhejiang Province, China were a cryptic species of V. sinensis. In maximum likelihood (ML) and Bayesian inference (BI) phylogenetic trees, the monophyly of the family Vietnamellidae was supported and Vietnamellidae has a close relationship with Ephemerellidae. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
24. Virtual reality system for diagnosis and therapeutic planning of cerebral aneurysms
- Author
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MO, Da-peng, BAO, Sheng-de, LI, Liang, YI, Zhi-qiang, ZHANG, Jia-yong, and ZHANG, Yang
- Published
- 2010
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- View/download PDF
25. Anomalous vertebral artery not passing through the transverse foramen of the atlas
- Author
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YI, Zhi-qiang, LI, Liang, MO, Da-peng, ZHANG, Jia-yong, ZHANG, Yang, and BAO, Sheng-de
- Published
- 2009
- Full Text
- View/download PDF
26. Preoperative surgical planning and simulation of complex cranial base tumors in virtual reality
- Author
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YI, Zhi-qiang, LI, Liang, MO, Da-peng, ZHANG, Jia-yong, ZHANG, Yang, and BAO, Sheng-de
- Published
- 2008
27. The first complete mitochondrial genome of Hexagenia rigida Mc Dunnough, 1924 (Ephemeroptera: Ephemeridae) and its phylogeny.
- Author
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Tong, Yao, Wu, Lian, Lin, Yi-Jie, Ayivi, Sam Pedro Galilee, Storey, Kenneth B., Zhang, Jia-Yong, and Yu, Dan-Na
- Subjects
MITOCHONDRIAL DNA ,MAYFLIES ,TRANSFER RNA ,WHOLE genome sequencing ,PHYLOGENY ,GENOMES ,STOP codons - Abstract
The phylogenetic relationship of Ephemeridae (Insect: Ephemeroptera) remains hotly debated using mitochondrial (mt) genomes. All previously reported mt genomes of Ephemeridae belong to the genus Ephemera. This study provides the first complete mt genome sequence from the genus Hexagenia with an analysis of the mitogenome of Hexagenia rigida Mc Dunnough, 1924 (Ephemeroptera: Ephemeridae) and providing new information to discuss the phylogenetic relationships within Ephemeroptera. The complete mt genome of H. rigida was a circular molecule of 16,159 bp in length, containing 37 genes (2 rRNA genes, 13 protein-coding genes, 22 tRNA genes), which showed the typical mt gene arrangement of insects. The AT content of the whole genome was 70.0% and the length of the control region was 1091 bp. All protein-coding genes used ATN as the start codon, and most PCGs used TAA/TAG as the stop codons excluding COI, COII, ND5 and Cyt b that used T as the stop codon. BI and ML phylogenetic trees constructed from 27 species of 13 families showed that Ephemeridae is a sister clade to the clade Polymitarcyidae. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
28. The complete mitochondrial genome of Rana johnsi (Smith, 2009) (Anura: Ranidae) and its phylogeny.
- Author
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Chen, Qing-Ping, Wu, Lian, Zhang, Shu-Sheng, Liu, Lei-Lei, Jin, Wan-Ting, Zhang, Jia-Yong, Zhang, Yong-Pu, and Yu, Dan-Na
- Subjects
RANIDAE ,ANURA ,RANA ,TRANSFER RNA ,LITHOBATES ,PHYLOGENY ,GENOMES - Abstract
Rana johnsi (Smith 2009) firstly considered as the member of genus Pseudorana, has been moved into the genus Rana. In this study, we sequenced the complete mitochondrial (mt) genome of R. johnsi using the Sanger method. The circular mt genome was 17,873 bp in length and contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosome RNA genes, and one control region. The overall nucleotide composition in majority-strand was 28% A, 29% T, 29% C, and 14% G. We discussed the phylogenetic relationship of R. johnsi in genus Rana using ML and BI analyses based on 13 PCGs. Excluding the clade of subgenus Lithobates, Rana draytonii was the basal clade to all other Rana species, which included R. johnsi as the basal clade. The monophyly of genus Rana was supported, whereas Pseudorana was failed to support. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
29. The mitochondrial genome of Eurycantha calcarata Lucas, 1869 (Phasmatodea: Lonchodinae) and its phylogeny.
- Author
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Xu, Ke-Ke, Chen, Qing-Ping, Guan, Jia-Yin, Zhang, Zi-Yi, Storey, Kenneth B., Yu, Dan-Na, and Zhang, Jia-Yong
- Subjects
PHASMIDA ,PHYLOGENY ,STOP codons ,MITOCHONDRIA ,SPECIES ,GENOMES - Abstract
The Lonchodinae (Phasmatodea: Phasmatidae) is rich in insect species with more than 330 species of 40 genera. The phylogenetic relationships within Lonchodinae have been under debate. We successfully sequenced the complete mitogenome of Eurycantha calcarata Lucas, 1869 (Phasmatodea: Lonchodinae) with a length of 16,280 bp, which had the same genes and gene arrangements as those of various published papers on stick insects. The whole mitogenome and control region of E. calcarata had a high AT content of 78.2 and 85.9%, respectively. All PCGs used ATN as the start codon, and most PCGs used TAA/TAG as the stop codons excluding COX2 (T), COX3 (TA), and ND5 (TA). To discuss the phylogeny of Lonchodinae, we reconstructed the phylogenetic relationships of 27 species of Phasmatodea including E. calcarata and two species of Embioptera used as outgroups. In BI and ML trees, the monophyly of Lonchodinae and Necrosciinae was well supported, whereas the monophyly of Clitumninae was not recovered. These results indicated that Lonchodinae was a sister clade to Phylliinae and E. calcarata was a sister clade to Phraortes genus. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
30. Strain-modulated electrical and optical bandgaps of tetragonal WO3: An HSE06 hybrid functional calculation.
- Author
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Zhu, Feng, Ma, Chun-Lan, Gao, Bei, Kuai, Jia-Jing, Zhang, Jia-Yong, and Zhang, Xiao-Hua
- Subjects
RIESZ spaces ,LIGHT absorption ,TANTALUM ,OPTICAL properties - Abstract
The Heyd–Scuseria–Ernzerhof screened hybrid functional is used to investigate the strain-modulated band structure and optical properties of tetragonal WO
3 . An electronic bandgap of 1.53 eV for the ground state of unstrained WO3 is obtained, which is consistent with the experimental value. Upon in-plane strains of 1.36%, 3.18%, 3.37%, and 4.36% along the directions of lattice vectors a → and b → , i.e., biaxial strains, as realized by growing WO3 on the (001) surface of LaAlO3 , NdGaO3 , La0.3 Sr0.7 Al0.65 Ta0.35 O3 , and SrTiO3 , the bandgap decreases down to 1.47 eV, 1.37 eV, 1.36 eV, and 1.30 eV, respectively. The largest change in band structure can induce the downshift of the optical absorption edge, with the optical bandgap decreasing from 2.65 eV to 2.28 eV. Further applying a strain along the direction of lattice vector c → , the bandgap can be additionally tuned very finely. Our research provides a promising tuning method for designing high efficient inorganic photovoltaic materials. [ABSTRACT FROM AUTHOR]- Published
- 2020
- Full Text
- View/download PDF
31. The first complete mitochondrial genome of Euroleon coreanus (Okamoto, 1926) (Neuroptera: Myrmeleontidae) and its phylogeny.
- Author
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Guan, Jia-Yin, Zhang, Hua, Zhang, Zi-Yi, Cao, Yu-Rou, Storey, Kenneth B., Zhang, Jia-Yong, and Yu, Dan-Na
- Subjects
ANT lions ,NEUROPTERA ,MITOCHONDRIA ,TRANSFER RNA ,GENE rearrangement ,GENOMES - Abstract
The first complete mitochondrial genome of Euroleon coreanus (Okamoto, 1926) was 15,797 bp in length, and contained 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs, and the control region. Compared to the classic insect mitochondrial genome, E. coreanus showed a gene rearrangement of ND2-C-W-Y-COX1. The overall AT content of the mitochondrial genome was 75.5%. The monophyly of Ascalaphidae, Myrmeleontidae, Nemopteridae, Nymphidae, and Psychopsidae was supported in both BI and ML trees. And E. coreanus was a sister clade to the clade of genus Myrmeleon. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
32. The first complete mitochondrial genome of Zoodes fulguratus (Gahan 1906) (Coleoptera: Cerambycidae: Cerambycinae) and its phylogeny.
- Author
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Ayivi, Sam Pedro Galilee, Tong, Yao, Guan, Jia-Yin, Storey, Kenneth B., Yu, Dan-Na, and Zhang, Jia-Yong
- Subjects
CERAMBYCIDAE ,PHYLOGENY ,INSECT genes ,MITOCHONDRIA ,BEETLES ,TRANSFER RNA ,GENOMES - Abstract
Zoodes fulguratus is a common species of Cerambycidae, reported from Vietnam, Nepal, Laos, Burma, and China. To date, no mitochondrial genomes of the genus Zoodes have been reported. In this study, we sequenced and analyzed the first mitochondrial genome of Z. fulguratus to discuss its phylogenetic relationship within the subfamily Cerambycinae. This mitochondrial genome showed the typical insect gene arrangement: a circular molecule of 15,885 bp long with 13 protein-coding genes, two ribosomal RNA genes (rRNAs), and 22 transfer RNA genes (tRNAs). The AT content of the whole mitogenome was 74.2% with a high asymmetric nucleotide presentation revealed by a positive AT-skew (0.067) and a negative GC-skew (–0.178), whereas the AT content of the A + T rich region was 80%. The Maximum likelihood (ML) and Bayesian inference (BI) phylogenetic analyses showed that Z. fulguratus is a sister clade of Gnatholea eburifera. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
33. The complete mitochondrial genome of Dryophytes versicolor: Phylogenetic relationship among Hylidae and mitochondrial protein-coding gene expression in response to freezing and anoxia.
- Author
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Zhang, Jia-Yong, Luu, Bryan E., Yu, Dan-Na, Zhang, Le-Ping, Al-attar, Rasha, and Storey, Kenneth B.
- Subjects
- *
GENE expression , *HYLIDAE , *GENOMES , *SKELETAL muscle , *PLANT mitochondria , *FREEZING - Abstract
Dryophytes versicolor is one of the most extreme freeze-tolerant frogs from eastern North America. In this study, the mitochondrial genome of D. versicolor was sequenced to analyze the phylogenetic relationships among Hylidae and investigate mitochondrial gene expression in response to freezing and anoxia. The total length of the D. versicolor mitogenome is the longest known to date among the available family members of Hylidae. Both maximum likelihood (ML) and Bayesian inference (BI) analyses strongly supported D. versicolor as a sister clade to (D. japonica + D. ussuriensis) + (D. suweonensis + D. immaculata (KP212702)), and indicated that Dryophytes is monophyletic. Using the mitochondrial genome, gene expression analysis was performed using RT-qPCR in skeletal muscle samples, and determined that relative levels of D. versicolor COX2 increased by 2.40 ± 0.23 fold in response to anoxia, but did not change with exposure to freezing. In addition, ND3 transcript levels decreased in response to anoxia but remained constant during freezing. By contrast, COX1 transcript levels decreased with exposure to freezing, but did not change under anoxic conditions. These results suggest that modulations of protein-coding mitochondrial genes of D. versicolor may play a role in the molecular response to freezing and anoxia tolerance. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
34. The complete mitochondrial genome of Pedetontus zhejiangensis (Microcoryphia: Machilidae) and its phylogeny.
- Author
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Shen, Shi-Qi, Cai, Yin-Yin, Xu, Ke-Ke, Chen, Qing-Ping, Cao, Si-Si, Yu, Dan-Na, and Zhang, Jia-Yong
- Abstract
The complete mitochondrial genome of Pedetontus zhejiangensis (Microcoryphia: Machilidae) was successfully sequenced. The mitochondrial genome of P. zhejiangensis was a circular molecule of 15,602 bp in length, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and the control region, which showed the typical insect mitochondrial genome arrangement. The AT content of the whole genome was 73.8% and the length of the control region was 671 bp with 82.5% AT content. In BI and ML phylogenetic trees, P. zhejiangensis was a sister group to Pedetontus silvestrii, and the monophyly of Pedetontus was strongly supported. The genus Pedetontinus was a sister group to Pedetontus. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
35. The complete mitochondrial genome of Xanthomantis bimaculata (Mantodea: Iridopterygidae) and its phylogeny.
- Author
-
Guan, Jia-Yin, Jia, Yi-Yang, Zhang, Zi-Yi, Cao, Si-Si, Ma, Jin-Liang, Zhang, Jia-Yong, and Yu, Dan-Na
- Abstract
The mitochondrial genome sequence of Xanthomantis bimaculata (Mantodea: Iridopterygidae) from Yunnan, China is a circular molecule with the typical insect mitochondrial gene arrangement, which is 15,941 bp in length and contains 22 tRNAs, two rRNAs, 13 protein-coding genes, and one control region. The overall AT content of the mitogenome is 73.12% (A = 37.58%, T = 35.54%, C = 16.54%, G = 10.34%). In BI and ML phylogenetic analyses, X. bimaculata was a sister clade to Sceptuchus simplex. The monophyly of the families Iridopterygidae, Thespidae and Liturgusidae were supported. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
36. The complete mitochondrial genome of Teratoscincus roborowskii (Squamata: Gekkonidae) and its phylogeny.
- Author
-
Ma, Jin-Liang, Dai, Xin-Yi, Xu, Xiao-Dong, Guan, Jia-Yin, Zhang, Yong-Pu, Zhang, Jia-Yong, and Yu, Dan-Na
- Subjects
GECKOS ,SQUAMATA ,TRANSFER RNA ,GENOMES ,GENETIC transformation - Abstract
The mitochondrial genome of Teratoscincus roborowskii (Squamata: Gekkonidae) (GenBank No. MT107158) was a circular molecule of 16,693 bp in length, including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 non-coding region (control region). The overall base composition of the H-strand of T. roborowskii is 30.6% A, 25.6% T, 29.7% C, 14.1% G, respectively. Phylogenetic analyses showed that T. roborowskii (MT107158) was a sister clade to T. keyserlingii whereas Teratoscincus roborowskii (KP115216) was a close sister clade of T. keyserlingii and T. roborowskii (MT107158). [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
37. Data for praying mantis mitochondrial genomes and phylogenetic constructions within Mantodea
- Author
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Zhang, Le-Ping, Yu, Dan-Na, Storey, Kenneth B., Cheng, Hong-Yi, and Zhang, Jia-Yong
- Published
- 2018
- Full Text
- View/download PDF
38. The complete mitochondrial genome of Annamanum lunulatum (Coleoptera: Lamiinae) and its phylogeny.
- Author
-
Dai, Xin-Yi, Zhang, Huan, Xu, Xiao-Dong, Jia, Yi-Yang, Zhang, Jia-Yong, Yu, Dan-Na, and Cheng, Hong-Yi
- Subjects
CERAMBYCIDAE ,GENOMES ,BEETLES ,RIBOSOMAL RNA ,TRANSFER RNA ,STAPHYLINIDAE ,INSECT diversity ,PERCIFORMES - Abstract
The complete mitochondrial genome of the Annamanum lunulatum is 15,610 bp in length, which contains 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs, and the A + T-rich region. The arrangement of genes is identical to all know longhorn beetles mitochondrial genomes. The overall AT content of the mitochondrial genome is 75.3%, whereas the AT content of A + T-rich region is 84.3%. In ML and BI phylogenetic analyses, A. lunulatum is a sister clade to Blepephaeus succinctor, and the monophyly of Lamiinae is supported. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
39. The complete mitochondrial genome of Mantis religiosa (Mantodea: Mantidae) from Canada and its phylogeny.
- Author
-
Jia, Yi-Yang, Zhang, Le-Ping, Xu, Xiao-Dong, Dai, Xin-Yi, Yu, Dan-Na, Storey, Kenneth B., and Zhang, Jia-Yong
- Subjects
MANTODEA ,GENOMES ,TRANSFER RNA ,GENETIC distance ,PLANT phylogeny ,RIBOSOMAL RNA ,GENES - Abstract
The complete mitochondrial genome of Mantis religiosa (Mantodea: Mantidae) from Canada was successfully sequenced. The mitochondrial genome was a circular molecule of 15,521 bp in length, containing 13 protein-coding genes, two rRNA genes, 23 tRNA genes (including an extra tRNA
Arg gene), and the control region. The AT content of the whole genome was 76.9% and the length of the control region was 636 bp with 81.9% AT content. The structure of the M. religiosa mitochondrial genome from Canada was almost identical to M. religiosa from China and their genetic distance was just 0.017. In Bayesian inference (BI) and maximum likelihood (ML) analyses, we found that M. religiosa was a sister clade to Statilia sp. and the monophyly of the genera Hierodula and Rhombodera was not supported. [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
- View/download PDF
40. Invertebrate Trehalose-6-Phosphate Synthase Gene: Genetic Architecture, Biochemistry, Physiological Function, and Potential Applications.
- Author
-
Tang, Bin, Wang, Su, Wang, Shi-Gui, Wang, Hui-Juan, Zhang, Jia-Yong, and Cui, Shuai-Ying
- Subjects
TREHALOSE-6-phosphate synthase ,SYNTHASE genetics ,PROTEIN genetics ,INSECT physiology ,GENETIC regulation - Abstract
The non-reducing disaccharide trehalose is widely distributed among various organisms. It plays a crucial role as an instant source of energy, being the major blood sugar in insects. In addition, it helps countering abiotic stresses. Trehalose synthesis in insects and other invertebrates is thought to occur via the trehalose-6-phosphate synthase (TPS) and trehalose-6-phosphate phosphatase (TPP) pathways. In many insects, the TPP gene has not been identified, whereas multiple TPS genes that encode proteins harboring TPS/OtsA and TPP/OtsB conserved domains have been found and cloned in the same species. The function of the TPS gene in insects and other invertebrates has not been reviewed in depth, and the available information is quite fragmented. The present review discusses the current understanding of the trehalose synthesis pathway, TPS genetic architecture, biochemistry, physiological function, and potential sensitivity to insecticides. We note the variability in the number of TPS genes in different invertebrate species, consider whether trehalose synthesis may rely only on the TPS gene, and discuss the results of in vitro TPS overexpression experiment. Tissue expression profile and developmental characteristics of the TPS gene indicate that it is important in energy production, growth and development, metamorphosis, stress recovery, chitin synthesis, insect flight, and other biological processes. We highlight the molecular and biochemical properties of insect TPS that make it a suitable target of potential pest control inhibitors. The application of trehalose synthesis inhibitors is a promising direction in insect pest control because vertebrates do not synthesize trehalose; therefore, TPS inhibitors would be relatively safe for humans and higher animals, making them ideal insecticidal agents without off-target effects. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
41. Tree diversity drives diversity of arthropod herbivores, but successional stage mediates detritivores.
- Author
-
O'Brien, Michael J., Brezzi, Matteo, Schuldt, Andreas, Zhang, Jia‐Yong, Ma, Keping, Schmid, Bernhard, and Niklaus, Pascal A.
- Subjects
ARTHROPODA ,HERBIVORES ,QUANTITATIVE research ,TREES ,BIODIVERSITY ,PLANT species - Abstract
The high tree diversity of subtropical forests is linked to the biodiversity of other trophic levels. Disentangling the effects of tree species richness and composition, forest age, and stand structure on higher trophic levels in a forest landscape is important for understanding the factors that promote biodiversity and ecosystem functioning. Using a plot network spanning gradients of tree diversity and secondary succession in subtropical forest, we tested the effects of tree community characteristics (species richness and composition) and forest succession (stand age) on arthropod community characteristics (morphotype diversity, abundance and composition) of four arthropod functional groups. We posit that these gradients differentially affect the arthropod functional groups, which mediates the diversity, composition, and abundance of arthropods in subtropical forests. We found that herbivore richness was positively related to tree species richness. Furthermore, the composition of herbivore communities was associated with tree species composition. In contrast, detritivore richness and composition was associated with stand age instead of tree diversity. Predator and pollinator richness and abundance were not strongly related to either gradient, although positive trends with tree species richness were found for predators. The weaker effect of tree diversity on predators suggests a cascading diversity effect from trees to herbivores to predators. Our results suggest that arthropod diversity in a subtropical forest reflects the net outcome of complex interactions among variables associated with tree diversity and stand age. Despite this complexity, there are clear linkages between the overall richness and composition of tree and arthropod communities, in particular herbivores, demonstrating that these trophic levels directly impact each other. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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42. The characteristics and phylogenetic relationship of two complete mitochondrial genomes of Matrona basilaris (Odonata: Zygoptera: Calopterygidae).
- Author
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Lan, Deng-Yong, Shen, Shi-Qi, Cai, Yin-Yin, Wang, Jun, Zhang, Jia-Yong, Storey, Kenneth B., and Yu, Dan-Na
- Subjects
TRANSFER RNA ,DAMSELFLIES ,ODONATA ,GENOMES ,TANDEM repeats ,NUCLEOTIDE sequence - Abstract
The relationship of Matrona and Atrocalopteryx (Odonata: Calopterygidae) is still unclear. To better understand the phylogenetic relationship of Matrona and Atrocalopteryx, we sequenced and annotated two complete mitochondrial genomes of Matrona basilaris sampled from two different locations. The length of the two complete mitochondrial genomes of M. basilaris is 16,149 bp and 15,893 bp for the specimens collected in Jinhua, Zhejiang Province and Tianmushan, Zhejiang Province, China, respectively. The two mitochondrial genomes include the typical invertebrate set of 37 genes: 13 protein-coding genes (PGCs), 22 tRNA genes, and 2 rRNA genes. The nucleotide composition of the mitogenome is similar to other odonates with high content of A + T (68.9%) and all PCGs use ATN as the start codon. Tandem repeats were detected in the control regions of the two M. basilaris samples that accounted for the different sequence lengths of the mitochondrial genomes from the two locations. Finally, BI and ML phylogenetic analysis based on the concatenated nucleotide sequences of the 13 PCGs supported the conclusion that M. basilaris is a sister clade to Atrocalopteryx melli. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
43. The complete mitochondrial genome of Xystrocera globosa (Coleoptera: Cerambycidae) and its phylogeny.
- Author
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Wang, Jun, Lan, Deng-Yong, Dai, Xin-Yi, Yu, Dan-Na, Storey, Kenneth B., and Zhang, Jia-Yong
- Subjects
CERAMBYCIDAE ,TRANSFER RNA ,GENOMES ,BEETLES ,RIBOSOMAL RNA ,INSECT diversity ,PLANT phylogeny - Abstract
The complete mitochondrial genome of Xystrocera globosa is 15,706 bp in length, containing 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs and the A + T-rich region. The overall base composition is 72.7% AT and 27.3% GC, and the AT content of the control region is 79.3%. In ML and BI phylogenetic trees, X. globosa was a sister clade to X. grayii. The monophyly of Lamiinae and Prioninae were supported in ML analyses, but nevertheless, the monophyly of Cerambycinae was not recovered. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
44. The mitochondrial genome of Caenis sp. (Ephemeroptera: Caenidae) and the phylogeny of Ephemeroptera in Pterygota.
- Author
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Cai, Yin-Yin, Gao, Ya-Jie, Zhang, Le-Ping, Yu, Dan-Na, Storey, Kenneth B., and Zhang, Jia-Yong
- Subjects
MAYFLIES ,CAENIDAE ,PHYLOGENY ,INSECTS ,MITOCHONDRIAL DNA - Abstract
The phylogenetic relationship between Ephemeroptera (mayflies) and Odonata (dragonflies and damselflies) remains hotly debated in the insect evolution community. We sequenced the complete mitochondrial genome of Caenis sp. (Ephemeroptera: Caenidae) to discuss the phylogenetic relationship of Palaeoptera. The mitochondrial genome of Caenis sp. is a circular molecule of 15,254 bp in length containing 37 genes (13 protein-coding genes, 22 tRNAs, and 2 rRNAs), which showed the typical insect mitochondrial gene arrangement. In BI and ML phylogenetic trees using 71 species of 12 orders, our results support the Ephemeroptera as the basal group of winged insects. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
45. The complete mitochondrial genome of Fejervarya kawamurai (Anura: Dicroglossidae) and its phylogeny.
- Author
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Cheng, Jian-Xiang, Cai, Yu-Ting, Zheng, Yu-Jie, Zhang, Jia-Yong, Storey, Kenneth B., Bao, Yi-Xin, and Yu, Dan-Na
- Subjects
TRANSFER RNA ,DICROGLOSSIDAE ,MITOCHONDRIAL DNA ,GENE expression ,NUCLEOTIDE sequencing - Abstract
The mitochondrial genome of Fejervarya kawamurai is a circular molecule of 17,650 bp in length, containing 13 protein-coding genes, two rRNA genes, 23 tRNA genes (including an extra tRNA-Met), and the control region. The AT content of the whole genome is 56.9%. In Bayesian inference (BI) and Maximum likelihood (ML) analyses, we found that F. kawamurai is a sister clade to F. multistriata and F. limnocharis. The monophyly of Fejervarya, Quasipaa, Nanorana was well supported (1.00 in BI and 100% in ML). [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
46. The complete mitochondrial genome of Choroterpides apiculata (Ephemeroptera: Leptophlebiidae) and its phylogenetic relationships.
- Author
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Cao, Si-Si, Xu, Xiao-Dong, Jia, Yi-Yang, Guan, Jia-Yin, Storey, Kenneth B., Yu, Dan-Na, and Zhang, Jia-Yong
- Subjects
MAYFLIES ,GENOMES ,PLANT phylogeny ,GENES ,TRANSFER RNA ,SPECIES - Abstract
The complete mitochondrial genome of Choroterpides apiculata (Ephemeroptera: Leptophlebiidae) is typically a circular molecule of 15,199 bp in length, containing 37 genes (13 protein-coding genes, 22 tRNAs, and two rRNAs) and one control region. The overall A + T content of the whole genome is 74% and the A + T content of the control region is 79.7%. In Bayesian inference and maximum-likelihood phylogenetic trees using 24 species from 13 families of Ephemeroptera, the monophyly of the families Isonychiidae, Heptageniidae, Vietnamellidae, Leptophlebiidae, Caenidae, and Baetidae were highly supported and C. apiculata was a sister group to Habrophlebiodes zijinensis. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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- View/download PDF
47. Isolation and characterization of 14 polymorphic microsatellite loci in the Asian yellow pond turtle, Mauremys mutica (Cantor, 1842).
- Author
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Zhang, Yun, Zhang, Jia-Yong, and Zheng, Rong-Quan
- Subjects
- *
MICROSATELLITE repeats , *TURTLES , *DNA , *GENE frequency , *GENOMICS - Abstract
The article presents a study which examines the isolation of the microsatellite loci that were found in Asian yellow pond turtle. The study uses the fast isolation by AFLP of sequences containing repeats (FIASCO), the extraction of genomic DNA, and the mixture of digestion and ligation. The study shows that the microsatellite loci had determined a number of alleles from five to 15, presented significant deviations, and identified no relation with the disequilibrium.
- Published
- 2010
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48. Complete nucleotide sequence and gene organization of the mitochondrial genome of Paa spinosa (Anura: Ranoidae)
- Author
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Zhou, Yan, Zhang, Jia-Yong, Zheng, Rong-Quan, Yu, Bao-Gen, and Yang, Guang
- Subjects
- *
NUCLEOTIDE sequence , *MITOCHONDRIAL DNA , *ANURA , *GENETICS , *TRANSFER RNA , *NUCLEOTIDES , *ADENOSINE triphosphatase , *PHYLOGENY , *CYTOCHROME oxidase - Abstract
Abstract: The mt genome of Paa spinosa (Anura: Ranoidae) is a circular molecule of 18,012 bp in length, containing 38 genes (including an extra copy of tRNA-Met gene). This mt genome is characterized by three distinctive features: a cluster of rearranged tRNA genes (LTPF tRNA gene cluster), a tandem duplication of tRNA-Met gene (Met1 and Met2), and distinct repeat regions at both 5′ and 3′-sides in the control region. Comparing the locations and the sequences of all tRNA-Met genes among Ranoidae, and constructing NJ tree of the nucleotide of those tRNA-Met genes, we suggested a tandem duplication of tRNA-Met gene can be regarded as a synapomorphy of Dicroglossinae. To further investigate the phylogenetic relationships of anurans, phylogenetic analyses (BI, ML and MP) based on the nucleotide dataset and the corresponding amino acid dataset of 11 protein-coding genes (except ND5 and ATP8) arrived at the similar topology. [Copyright &y& Elsevier]
- Published
- 2009
- Full Text
- View/download PDF
49. The Mitochondrial Genomes of 18 New Pleurosticti (Coleoptera: Scarabaeidae) Exhibit a Novel trnQ-NCR-trnI-trnM Gene Rearrangement and Clarify Phylogenetic Relationships of Subfamilies within Scarabaeidae.
- Author
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Ayivi, Sam Pedro Galilee, Tong, Yao, Storey, Kenneth B., Yu, Dan-Na, and Zhang, Jia-Yong
- Subjects
GENE rearrangement ,SCARABAEIDAE ,BEETLES ,INSECT genes ,LINCRNA ,TRANSFER RNA ,MITOCHONDRIA ,GENOMES - Abstract
Simple Summary: The family Scarabaeidae is one of the largest families in the insect order Coleoptera and is comprised of two quasi-systematics groups, Pleurosticti and Laparosticti. Pleurosticti is an economically important scarab group comprising about 20,000 species, the majority of which are phytophagous. Despite the innumerable studies based on ecological, molecular, and morphological characteristics, their taxonomy is still unclear and subject to many scientific hypotheses. The mitochondrial (mt) genome can provide tangible information to resolve the phylogenetic relationships within the family Scarabaeidae. However, the available mt genomes of Scarabaeidae in GenBank are underrepresented. Thus, we sequenced and analyzed 18 new phytophagous Scarabaeidae mitochondrial genomes from two subfamilies, Cetoniinae and Dynastinae, to conduct phylogenetic analyses within Scarabaeidae. This study contributes to increasing our knowledge about phytophagous Scarabaeidae. The availability of next-generation sequencing (NGS) in recent years has facilitated a revolution in the availability of mitochondrial (mt) genome sequences. The mt genome is a powerful tool for comparative studies and resolving the phylogenetic relationships among insect lineages. The mt genomes of phytophagous scarabs of the subfamilies Cetoniinae and Dynastinae were under-represented in GenBank. Previous research found that the subfamily Rutelinae was recovered as a paraphyletic group because the few representatives of the subfamily Dynastinae clustered into Rutelinae, but the subfamily position of Dynastinae was still unclear. In the present study, we sequenced 18 mt genomes from Dynastinae and Cetoniinae using next-generation sequencing (NGS) to re-assess the phylogenetic relationships within Scarabaeidae. All sequenced mt genomes contained 37 sets of genes (13 protein-coding genes, 22 tRNAs, and two ribosomal RNAs), with one long control region, but the gene order was not the same between Cetoniinae and Dynastinae species. All mt genomes of Dynastinae species showed the same gene rearrangement of trnQ-NCR-trnI-trnM, whereas all mt genomes of Cetoniinae species showed the ancestral insect gene order of trnI-trnQ-trnM. Phylogenetic analyses (IQ-tree and MrBayes) were conducted using 13 protein-coding genes based on nucleotide and amino acid datasets. In the ML and BI trees, we recovered the monophyly of Rutelinae, Cetoniinae, Dynastinae, and Sericinae, and the non-monophyly of Melolonthinae. Cetoniinae was shown to be a sister clade to (Dynastinae + Rutelinae). [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
50. The mitochondrial genome of Caenis sp. (Ephemeroptera: Caenidae) from Fujian and the phylogeny of Caenidae within Ephemeroptera.
- Author
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Xu, Xiao-Dong, Jia, Yi-Yang, Dai, Xin-Yi, Ma, Jin-Liang, Storey, Kenneth B., Zhang, Jia-Yong, and Yu, Dan-Na
- Subjects
MAYFLIES ,INSECT genes ,GENOMES ,TRANSFER RNA ,PLANT phylogeny ,PHYLOGENY - Abstract
The phylogenetic relationship of Caenidae remains hotly debated within the Ephemeroptera. We sequenced the complete mitochondrial genome of Caenis sp. (Ephemeroptera: Caenidae) to discuss the phylogenetic relationships among the Caenidae. The mitochondrial genome of Caenis sp. collected from Jian'ou, Fujian province, China is a circular molecule of 15,392 bp in length containing 37 genes (13 protein-coding genes, 22 tRNAs, and two rRNAs), which showed the typical insect mitochondrial gene arrangement. In BI and ML phylogenetic trees using 23 species from 13 families, the monophyly of the families Caenidae, Heptageniidae, Isonychiidae, and Vietnamellidae was strongly supported. The clade of Caenidae is a sister clade to the clade of Teloganodidae and Baetidae. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
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