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The data explosion driven by advancements in genomic research, such as high-throughput sequencing techniques, is constantly challenging conventional methods used in genomics. In parallel with the urgent demand for robust algorithms, deep learning has succeeded in various fields such as vision, speech, and text processing. Yet genomics entails unique challenges to deep learning, since we expect a superhuman intelligence that explores beyond our knowledge to interpret the genome from deep learning. A powerful deep learning model should rely on the insightful utilization of task-specific knowledge. In this paper, we briefly discuss the strengths of different deep learning models from a genomic perspective so as to fit each particular task with proper deep learning-based architecture, and we remark on practical considerations of developing deep learning architectures for genomics. We also provide a concise review of deep learning applications in various aspects of genomic research and point out current challenges and potential research directions for future genomics applications. We believe the collaborative use of ever-growing diverse data and the fast iteration of deep learning models will continue to contribute to the future of genomics. [ABSTRACT FROM AUTHOR]

Harnessing commonsense knowledge poses a significant challenge for machine comprehension systems. This paper primarily focuses on incorporating a specific subset of commonsense knowledge, namely, script knowledge. Script knowledge is about sequences of actions that are typically performed by individuals in everyday life. Our experiments were centered around the MCScript dataset, which was the basis of the SemEval-2018 Task 11: Machine Comprehension using Commonsense Knowledge. As a baseline, we utilized our Three-Way Attentive Networks (TriANs) framework to model the interactions among passages, questions, and answers. Building upon the TriAN, we proposed to: (1) integrate a pre-trained language model to capture script knowledge; (2) introduce multi-layer attention to facilitate multi-hop reasoning; and (3) incorporate positional embeddings to enhance the model's capacity for event-ordering reasoning. In this paper, we present our proposed methods and prove their efficacy in improving script knowledge integration and reasoning. [ABSTRACT FROM AUTHOR]

As the popularity of large language models (LLMs) has risen over the course of the last year, led by GPT-3/4 and especially its productization as ChatGPT, we have witnessed the extensive application of LLMs to text summarization. However, LLMs do not intrinsically have the power to verify the correctness of the information they supply and generate. This research introduces a novel approach to abstractive summarization, aiming to address the limitations of LLMs in that they struggle to understand the truth. The proposed method leverages extracted knowledge graph information and structured semantics as a guide for summarization. Building upon BART, one of the state-of-the-art sequence-to-sequence pre-trained LLMs, multi-source transformer modules are developed as an encoder, which are capable of processing textual and graphical inputs. Decoding is performed based on this enriched encoding to enhance the summary quality. The Wiki-Sum dataset, derived from Wikipedia text dumps, is introduced for evaluation purposes. Comparative experiments with baseline models demonstrate the strengths of the proposed approach in generating informative and relevant summaries. We conclude by presenting our insights into utilizing LLMs with graph external information, which will become a powerful aid towards the goal of factually correct and verified LLMs. [ABSTRACT FROM AUTHOR]

In this letter, we consider the problem of compressive sensing of hyperspectral images (HSIs). We propose a novel tensor-based approach by modeling the global spatial–spectral correlation and local smoothness properties hidden in HSIs. Specifically, we use the tensor Tucker decomposition to describe the global spatial–spectral correlation among all HSI bands, and a weighted 3-D total variation to characterize the local smooth structure in both spatial and spectral modes. We then design an efficient algorithm to solve the resulting optimization problem by using the alternating direction method of multipliers. Experimental results on several HSI data sets demonstrate improved reconstruction performance of the proposed approach, as compared with other competing approaches. [ABSTRACT FROM PUBLISHER]