24 results on '"Yuanyi Feng"'
Search Results
2. Wearable Fabric System for Sarcopenia Detection
- Author
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Zhenhe Huang, Qiuqian Ou, Dan Li, Yuanyi Feng, Liangling Cai, Yue Hu, and Hongwei Chu
- Subjects
wearable sensor ,health monitoring ,sarcopenia ,Biotechnology ,TP248.13-248.65 - Abstract
Sarcopenia has been a serious concern in the context of an increasingly aging global population. Existing detection methods for sarcopenia are severely constrained by cumbersome devices, the necessity for specialized personnel, and controlled experimental environments. In this study, we developed an innovative wearable fabric system based on conductive fabric and flexible sensor array. This fabric system demonstrates remarkable pressure-sensing capabilities, with a high sensitivity of 18.8 kPa−1 and extraordinary stability. It also exhibits excellent flexibility for wearable applications. By interacting with different parts of the human body, it facilitates the monitoring of various physiological activities, such as pulse dynamics, finger movements, speaking, and ambulation. Moreover, this fabric system can be seamlessly integrated into sole to track critical indicators of sarcopenia patients, such as walking speed and gait. Clinical evaluations have shown that this fabric system can effectively detect variations in indicators relevant to sarcopenia patients, proving that it offers a straightforward and promising approach for the diagnosis and assessment of sarcopenia.
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- 2024
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3. Sustained generation of neurons destined for neocortex with oxidative metabolic upregulation upon filamin abrogation
- Author
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Caroline A. Kopsidas, Clara C. Lowe, Dennis P. McDaniel, Xiaoming Zhou, and Yuanyi Feng
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Developmental neuroscience ,Cellular neuroscience ,Science - Abstract
Summary: Neurons in the neocortex are generated during embryonic development. While the adult ventricular-subventricular zone (V-SVZ) contains cells with neural stem/progenitors’ characteristics, it remains unclear whether it has the capacity of producing neocortical neurons. Here, we show that generating neurons with transcriptomic resemblance to upper layer neocortical neurons continues in the V-SVZ of mouse models of a human condition known as periventricular heterotopia by abrogating Flna and Flnb. We found such surplus neurogenesis was associated with V-SVZ’s upregulation of oxidative phosphorylation, mitochondrial biogenesis, and vascular abundance. Additionally, spatial transcriptomics analyses showed V-SVZ’s neurogenic activation was coupled with transcriptional enrichment of genes in diverse pathways for energy metabolism, angiogenesis, cell signaling, synaptic transmission, and turnovers of nucleic acids and proteins in upper cortical layers. These findings support the potential of generating neocortical neurons in adulthood through boosting brain-wide vascular circulation, aerobic adenosine triphosphate synthesis, metabolic turnover, and neuronal activity.
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- 2024
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4. Oral probiotics increased the proportion of Treg, Tfr, and Breg cells to inhibit the inflammatory response and impede gestational diabetes mellitus
- Author
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Weijie Liang, Yuanyi Feng, Dongmei Yang, Jiajun Qin, Ximei Zhi, Wen Wu, and Qiang Jie
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Gestational diabetes mellitus ,Gut microbiota dysbiosis ,Leptin ,Probiotics ,Transcriptome sequencing ,Metagenomic sequencing ,Therapeutics. Pharmacology ,RM1-950 ,Biochemistry ,QD415-436 - Abstract
Abstract Background Children of mothers with gestational diabetes mellitus (GDM) are more prone to acquire type 2 diabetes and obesity as adults. Due to this link, early intervention strategies that alter the gut microbiome may benefit the mother and kid long-term. This work uses metagenomic and transcriptome sequencing to investigate how probiotics affect gut microbiota dysbiosis and inflammation in GDM. Methods GDM and control metagenomic sequencing data were obtained from the SRA database. This metagenomic data helped us understand gut microbiota abundance and function. KEGG detected and extracted functional pathway genes. Transcriptome sequencing data evaluated GDM-related gene expression. Finally, GDM animal models were given probiotics orally to evaluate inflammatory response, regulatory immune cell fractions, and leptin protein levels. Results GDM patients had more Fusobacteria and Firmicutes, while healthy people had more Bacteroidetes. Gut microbiota composition may affect GDM by altering the L-aspartate and L-asparagine super pathways. Mannan degradation and the super pathway of L-aspartate and L-asparagine synthesis enhanced in GDM mice with leptin protein overexpression. Oral probiotics prevent GDM by lowering leptin. Oral probiotics increased Treg, Tfr, and Breg cells, which decreased TNF-α and IL-6 and increased TGF-β and IL-10, preventing inflammation and preserving mouse pregnancy. Conclusion Dysbiosis of the gut microbiota may increase leptin expression and cause GDM. Oral probiotics enhance Treg, Tfr, and Breg cells, which limit the inflammatory response and assist mice in sustaining normal pregnancy. Thus, oral probiotics may prevent GDM, enabling targeted gut microbiota modulation and maternal and fetal health.
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- 2023
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5. A clinically-relevant mouse model that displays hemorrhage exacerbates tourniquet-induced acute kidney injury
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Balamurugan Packialakshmi, David M. Burmeister, Joseph A. Anderson, Judah Morgan, Georgetta Cannon, Juliann G. Kiang, Yuanyi Feng, Sang Lee, Ian J. Stewart, and Xiaoming Zhou
- Subjects
lower limb ,ischemia/reperfusion ,rhabdomyolysis ,systemic inflammation ,lung injury ,liver injury ,Physiology ,QP1-981 - Abstract
Hemorrhage is a leading cause of death in trauma. Tourniquets are effective at controlling extremity hemorrhage and have saved lives. However, tourniquets can cause ischemia reperfusion injury of limbs, leading to systemic inflammation and other adverse effects, which results in secondary damage to the kidney, lung, and liver. A clinically relevant animal model is critical to understanding the pathophysiology of this process and developing therapeutic interventions. Despite the importance of animal models, tourniquet-induced lower limb ischemia/reperfusion (TILLIR) models to date lack a hemorrhage component. We sought to develop a new TILLIR model that included hemorrhage and analyze the subsequent impact on kidney, lung and liver injuries. Four groups of mice were examined: group 1) control, group 2) hemorrhage, group 3) tourniquet application, and group 4) hemorrhage and tourniquet application. The hemorrhagic injury consisted of the removal of 15% of blood volume through the submandibular vein. The tourniquet injury consisted of orthodontic rubber bands applied to the inguinal area bilaterally for 80 min. Mice were then placed in metabolic cages individually for 22 h to collect urine. Hemorrhage alone did not significantly affect transcutaneous glomerular filtration rate (tGFR), blood urea nitrogen (BUN) or urinary kidney injury molecule-1 (KIM-1) levels. Without hemorrhage, TILLIR decreased tGFR by 46%, increased BUN by 162%, and increased KIM-1 by 27% (p < 0.05 for all). With hemorrhage, TILLIR decreased the tGFR by 72%, increased BUN by 395%, and increased urinary KIM-1 by 37% (p < 0.05 for all). These differences were statistically significant (p < 0.05). While hemorrhage had no significant effect on TILLIR-induced renal tubular degeneration and necrosis, it significantly increased TILLIR-induced lung total injury scores and congestion, and fatty liver. In conclusion, hemorrhage exacerbates TILLIR-induced acute kidney injury and structural damage in the lung and liver.
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- 2023
- Full Text
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6. Histone H2A ubiquitination resulting from Brap loss of function connects multiple aging hallmarks and accelerates neurodegeneration
- Author
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Yan Guo, Alison.A. Chomiak, Ye Hong, Clara C. Lowe, Caroline A. Kopsidas, Wen-Ching Chan, Jorge Andrade, Hongna Pan, Xiaoming Zhou, Edwin S. Monuki, and Yuanyi Feng
- Subjects
Biological sciences ,Neuroscience ,Cellular neuroscience ,Cell biology ,Functional aspects of cell biology ,Science - Abstract
Summary: Aging is an intricate process characterized by multiple hallmarks including stem cell exhaustion, genome instability, epigenome alteration, impaired proteostasis, and cellular senescence. Whereas each of these traits is detrimental at the cellular level, it remains unclear how they are interconnected to cause systemic organ deterioration. Here we show that abrogating Brap, a BRCA1-associated protein essential for neurogenesis, results in persistent DNA double-strand breaks and elevation of histone H2A mono- and poly-ubiquitination (H2Aub). These defects extend to cellular senescence and proteasome-mediated histone H2A proteolysis with alterations in cells’ proteomic and epigenetic states. Brap deletion in the mouse brain causes neuroinflammation, impaired proteostasis, accelerated neurodegeneration, and substantially shortened the lifespan. We further show the elevation of H2Aub also occurs in human brain tissues with Alzheimer’s disease. These data together suggest that chromatin aberrations mediated by H2Aub may act as a nexus of multiple aging hallmarks and promote tissue-wide degeneration.
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- 2022
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7. Nde1 is required for heterochromatin compaction and stability in neocortical neurons
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Alison A. Chomiak, Yan Guo, Caroline A. Kopsidas, Dennis P. McDaniel, Clara C. Lowe, Hongna Pan, Xiaoming Zhou, Qiong Zhou, Martin L. Doughty, and Yuanyi Feng
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Biological sciences ,Molecular biology ,Neuroscience ,Science - Abstract
Summary: The NDE1 gene encodes a scaffold protein essential for brain development. Although biallelic NDE1 loss of function (LOF) causes microcephaly with profound mental retardation, NDE1 missense mutations and copy number variations are associated with multiple neuropsychiatric disorders. However, the etiology of the diverse phenotypes resulting from NDE1 aberrations remains elusive. Here we demonstrate Nde1 controls neurogenesis through facilitating H4K20 trimethylation-mediated heterochromatin compaction. This mechanism patterns diverse chromatin landscapes and stabilizes constitutive heterochromatin of neocortical neurons. We demonstrate that NDE1 can undergo dynamic liquid-liquid phase separation, partitioning to the nucleus and interacting with pericentromeric and centromeric satellite repeats. Nde1 LOF results in nuclear architecture aberrations and DNA double-strand breaks, as well as instability and derepression of pericentromeric satellite repeats in neocortical neurons. These findings uncover a pivotal role of NDE1/Nde1 in establishing and protecting neuronal heterochromatin. They suggest that heterochromatin instability predisposes a wide range of brain dysfunction.
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- 2022
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8. Tourniquet‐induced lower limb ischemia/reperfusion reduces mitochondrial function by decreasing mitochondrial biogenesis in acute kidney injury in mice
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Balamurugan Packialakshmi, Ian J. Stewart, David M. Burmeister, Yuanyi Feng, Dennis P. McDaniel, Kevin K. Chung, and Xiaoming Zhou
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autophagy ,ischemia ,mitochondrial complex ,mitochondrial oxidative stress ,mitophagy ,Physiology ,QP1-981 - Abstract
Abstract The mechanisms by which lower limb ischemia/reperfusion induces acute kidney injury (AKI) remain largely uncharacterized. We hypothesized that tourniquet‐induced lower limb ischemia/reperfusion (TILLIR) would inhibit mitochondrial function in the renal cortex. We used a murine model to show that TILLIR of the high thigh regions inflicted time‐dependent AKI as determined by renal function and histology. This effect was associated with decreased activities of mitochondrial complexes I, II, V and citrate synthase in the kidney cortex. Moreover, TILLIR reduced mRNA levels of a master regulator of mitochondrial biogenesis PGC‐1α, and its downstream genes NDUFS1 and ATP5o in the renal cortex. TILLIR also increased serum corticosterone concentrations. TILLIR did not significantly affect protein levels of the critical regulators of mitophagy PINK1 and PARK2, mitochondrial transport proteins Tom20 and Tom70, or heat‐shock protein 27. TILLIR had no significant effect on mitochondrial oxidative stress as determined by mitochondrial ability to generate reactive oxygen species, protein carbonylation, or protein levels of MnSOD and peroxiredoxin1. However, TILLIR inhibited classic autophagic flux by increasing p62 protein abundance and preventing the conversion of LC3‐I to LC3‐II. TILLIR increased phosphorylation of cytosolic and mitochondrial ERK1/2 and mitochondrial AKT1, as well as mitochondrial SGK1 activity. In conclusion, lower limb ischemia/reperfusion induces distal AKI by inhibiting mitochondrial function through reducing mitochondrial biogenesis. This AKI occurs without significantly affecting PINK1‐PARK2‐mediated mitophagy or mitochondrial oxidative stress in the kidney cortex.
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- 2022
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9. Loss of Brap Results in Premature G1/S Phase Transition and Impeded Neural Progenitor Differentiation
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Alison A. Lanctot, Yan Guo, Yicong Le, Brittany M. Edens, Richard S. Nowakowski, and Yuanyi Feng
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Summary: Cells initiate fate decisions during G1 phase by converting extracellular signals into distinctive cell cycle kinetics. The DNA replication timing is determined in G1 phase; lengthened G1 and hastened S phases correlate with increased neurogenic propensity of neural progenitor cells (NPCs), although the underlying molecular control remains elusive. Here, we report that proper G1 phase completion in NPCs requires Brap, a Ras-Erk signaling modulator with ubiquitin E3 ligase activity. We identified Skp2 and Skp2-associated SCF ubiquitin ligase as a key target of Brap-mediated polyubiquitination. Loss of Brap resulted in elevated Skp2, which increased p27Kip1 destruction, leading to G1 phase truncation and premature S phase entry. The aberrantly executed G1 in Brap-mutant NPCs, followed by hindered S phase progression and increased G2 phase arrest, which together prolonged the cell cycle, impeded neuronal differentiation and culminated in microcephaly. These findings demonstrate that neuronal differentiation is potentiated during G1 phase by Brap-directed cascade of events in cell signaling and protein turnover. : Lanctot et al. show that the capacity of neural progenitors to generate cerebral cortical neurons relies on the integration of cell signaling and ubiquitin-mediated protein turnover to complete G1 phase of the cell cycle. Keywords: cell cycle, G1 phase, G1/S transition, stem/progenitor, differentiation, ubiquitination, cerebral cortical neurogenesis
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- 2017
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10. Arterial Myogenic Activation through Smooth Muscle Filamin A
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Kevin Retailleau, Malika Arhatte, Sophie Demolombe, Rémi Peyronnet, Véronique Baudrie, Martine Jodar, Jennifer Bourreau, Daniel Henrion, Stefan Offermanns, Fumihiko Nakamura, Yuanyi Feng, Amanda Patel, Fabrice Duprat, and Eric Honoré
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Mutations in the filamin A (FlnA) gene are frequently associated with severe arterial abnormalities, although the physiological role for this cytoskeletal element remains poorly understood in vascular cells. We used a conditional mouse model to selectively delete FlnA in smooth muscle (sm) cells at the adult stage, thus avoiding the developmental effects of the knockout. Basal blood pressure was significantly reduced in conscious smFlnA knockout mice. Remarkably, pressure-dependent tone of the resistance caudal artery was lost, whereas reactivity to vasoconstrictors was preserved. Impairment of the myogenic behavior was correlated with a lack of calcium influx in arterial myocytes upon an increase in intraluminal pressure. Notably, the stretch activation of CaV1.2 was blunted in the absence of smFlnA. In conclusion, FlnA is a critical upstream element of the signaling cascade underlying the myogenic tone. These findings allow a better understanding of the molecular basis of arterial autoregulation and associated disease states.
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- 2016
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11. Piezo1 in Smooth Muscle Cells Is Involved in Hypertension-Dependent Arterial Remodeling
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Kevin Retailleau, Fabrice Duprat, Malika Arhatte, Sanjeev Sumant Ranade, Rémi Peyronnet, Joana Raquel Martins, Martine Jodar, Céline Moro, Stefan Offermanns, Yuanyi Feng, Sophie Demolombe, Amanda Patel, and Eric Honoré
- Subjects
Biology (General) ,QH301-705.5 - Abstract
The mechanically activated non-selective cation channel Piezo1 is a determinant of vascular architecture during early development. Piezo1-deficient embryos die at midgestation with disorganized blood vessels. However, the role of stretch-activated ion channels (SACs) in arterial smooth muscle cells in the adult remains unknown. Here, we show that Piezo1 is highly expressed in myocytes of small-diameter arteries and that smooth-muscle-specific Piezo1 deletion fully impairs SAC activity. While Piezo1 is dispensable for the arterial myogenic tone, it is involved in the structural remodeling of small arteries. Increased Piezo1 opening has a trophic effect on resistance arteries, influencing both diameter and wall thickness in hypertension. Piezo1 mediates a rise in cytosolic calcium and stimulates activity of transglutaminases, cross-linking enzymes required for the remodeling of small arteries. In conclusion, we have established the connection between an early mechanosensitive process, involving Piezo1 in smooth muscle cells, and a clinically relevant arterial remodeling.
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- 2015
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12. Upregulation of neurovascular communication through filamin abrogation promotes ectopic periventricular neurogenesis
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Shauna L Houlihan, Alison A Lanctot, Yan Guo, and Yuanyi Feng
- Subjects
cerebral cortex ,neurogenesis ,intermediate progenitor ,neurovascular ,EMT ,filamin ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Neuronal fate-restricted intermediate progenitors (IPs) are derived from the multipotent radial glia (RGs) and serve as the direct precursors for cerebral cortical neurons, but factors that control their neurogenic plasticity remain elusive. Here we report that IPs’ neuron production is enhanced by abrogating filamin function, leading to the generation of periventricular neurons independent of normal neocortical neurogenesis and neuronal migration. Loss of Flna in neural progenitor cells (NPCs) led RGs to undergo changes resembling epithelial-mesenchymal transition (EMT) along with exuberant angiogenesis that together changed the microenvironment and increased neurogenesis of IPs. We show that by collaborating with β-arrestin, Flna maintains the homeostatic signaling between the vasculature and NPCs, and loss of this function results in escalated Vegfa and Igf2 signaling, which exacerbates both EMT and angiogenesis to further potentiate IPs’ neurogenesis. These results suggest that the neurogenic potential of IPs may be boosted in vivo by manipulating Flna-mediated neurovascular communication.
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- 2016
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13. The scaffold protein Nde1 safeguards the brain genome during S phase of early neural progenitor differentiation
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Shauna L Houlihan and Yuanyi Feng
- Subjects
neurogenesis ,DNA replication ,DNA damage response ,cerebral cortex ,cohesin ,heterochromatin ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Successfully completing the S phase of each cell cycle ensures genome integrity. Impediment of DNA replication can lead to DNA damage and genomic disorders. In this study, we show a novel function for NDE1, whose mutations cause brain developmental disorders, in safeguarding the genome through S phase during early steps of neural progenitor fate restrictive differentiation. Nde1 mutant neural progenitors showed catastrophic DNA double strand breaks concurrent with the DNA replication. This evoked DNA damage responses, led to the activation of p53-dependent apoptosis, and resulted in the reduction of neurons in cortical layer II/III. We discovered a nuclear pool of Nde1, identified the interaction of Nde1 with cohesin and its associated chromatin remodeler, and showed that stalled DNA replication in Nde1 mutants specifically occurred in mid-late S phase at heterochromatin domains. These findings suggest that NDE1-mediated heterochromatin replication is indispensible for neuronal differentiation, and that the loss of NDE1 function may lead to genomic neurological disorders.
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- 2014
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14. Three-dimensional regulation of radial glial functions by Lis1-Nde1 and dystrophin glycoprotein complexes.
- Author
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Ashley S Pawlisz and Yuanyi Feng
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Biology (General) ,QH301-705.5 - Abstract
Radial glial cells (RGCs) are distinctive neural stem cells with an extraordinary slender bipolar morphology and dual functions as precursors and migration scaffolds for cortical neurons. Here we show a novel mechanism by which the Lis1-Nde1 complex maintains RGC functions through stabilizing the dystrophin/dystroglycan glycoprotein complex (DGC). A direct interaction between Nde1 and utrophin/dystrophin allows for the assembly of a multi-protein complex that links the cytoskeleton to the extracellular matrix of RGCs to stabilize their lateral membrane, cell-cell adhesion, and radial morphology. Lis1-Nde1 mutations destabilized the DGC and resulted in deformed, disjointed RGCs and disrupted basal lamina. Besides impaired RGC self-renewal and neuronal migration arrests, Lis1-Nde1 deficiencies also led to neuronal over-migration. Additional to phenotypic resemblances of Lis1-Nde1 with DGC, strong synergistic interactions were found between Nde1 and dystroglycan in RGCs. As functional insufficiencies of LIS1, NDE1, and dystroglycan all cause lissencephaly syndromes, our data demonstrated that a three-dimensional regulation of RGC's cytoarchitecture by the Lis1-Nde1-DGC complex determines the number and spatial organization of cortical neurons as well as the size and shape of the cerebral cortex.
- Published
- 2011
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15. A clinically-relevant mouse model that displays hemorrhage exacerbates tourniquet-induced acute kidney injury.
- Author
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Packialakshmi, Balamurugan, Burmeister, David M., Anderson, Joseph A., Morgan, Judah, Cannon, Georgetta, Kiang, Juliann G., Yuanyi Feng, Sang Lee, Stewart, Ian J., and Xiaoming Zhou
- Subjects
ACUTE kidney failure ,LABORATORY mice ,REPERFUSION injury ,HEMORRHAGE ,BLOOD urea nitrogen - Abstract
Hemorrhage is a leading cause of death in trauma. Tourniquets are effective at controlling extremity hemorrhage and have saved lives. However, tourniquets can cause ischemia reperfusion injury of limbs, leading to systemic inflammation and other adverse effects, which results in secondary damage to the kidney, lung, and liver. A clinically relevant animal model is critical to understanding the pathophysiology of this process and developing therapeutic interventions. Despite the importance of animal models, tourniquet-induced lower limb ischemia/reperfusion (TILLIR) models to date lack a hemorrhage component. We sought to develop a new TILLIR model that included hemorrhage and analyze the subsequent impact on kidney, lung and liver injuries. Four groups of mice were examined: group 1) control, group 2) hemorrhage, group 3) tourniquet application, and group 4) hemorrhage and tourniquet application. The hemorrhagic injury consisted of the removal of 15% of blood volume through the submandibular vein. The tourniquet injury consisted of orthodontic rubber bands applied to the inguinal area bilaterally for 80 min. Mice were then placed in metabolic cages individually for 22 h to collect urine. Hemorrhage alone did not significantly affect transcutaneous glomerular filtration rate (tGFR), blood urea nitrogen (BUN) or urinary kidney injury molecule-1 (KIM-1) levels. Without hemorrhage, TILLIR decreased tGFR by 46%, increased BUN by 162%, and increased KIM-1 by 27% (p < 0.05 for all). With hemorrhage, TILLIR decreased the tGFR by 72%, increased BUN by 395%, and increased urinary KIM-1 by 37% (p < 0.05 for all). These differences were statistically significant (p < 0.05). While hemorrhage had no significant effect on TILLIR-induced renal tubular degeneration and necrosis, it significantly increased TILLIR-induced lung total injury scores and congestion, and fatty liver. In conclusion, hemorrhage exacerbates TILLIR-induced acute kidney injury and structural damage in the lung and liver. [ABSTRACT FROM AUTHOR]
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- 2023
- Full Text
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16. Cross-platform privacy-preserving CT image COVID-19 diagnosis based on source-free domain adaptation
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Yuanyi Feng, Yuemei Luo, Jianfei Yang, and School of Electrical and Electronic Engineering
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Information Systems and Management ,Deep Learning ,Artificial Intelligence ,Electrical and electronic engineering [Engineering] ,Software ,Domain Adaptation ,Management Information Systems - Abstract
In the wake of the Coronavirus disease (COVID-19) pandemic, chest computed tomography (CT) has become an invaluable component in the rapid and accurate detection of COVID-19. CT scans traditionally require manual inspections from medical professionals, which is expensive and tedious. With advancements in machine learning, deep neural networks have been applied to classify CT scans for efficient diagnosis. However, three challenges hinder this application of deep learning: (1) Domain shift across CT platforms and human subjects impedes the performance of neural networks in different hospitals. (2) Unsupervised Domain Adaptation (UDA), the traditional method to overcome domain shift, typically requires access to both source and target data. This is not realistic in COVID-19 diagnosis due to the sensitivity of medical data. The privacy of patients must be protected. (3) Data imbalance may exist between easy/hard samples and between data classes which can overwhelm the training of deep networks, causing degenerate models. To overcome these challenges, we propose a Cross-Platform Privacy-Preserving COVID-19 diagnosis network (CP 3 Net) that integrates domain adaptation, self-supervised learning, imbalanced label learning, and rotation classifier training into one synergistic framework. We also create a new CT benchmark by combining real-world datasets from multiple medical platforms to facilitate the cross-domain evaluation of our method. Through extensive experiments, we demonstrate that CP 3 Net outperforms many popular UDA methods and achieves state-of-the-art results in diagnosing COVID-19 using CT scans. Nanyang Technological University This work is supported by NTU Presidential Postdoctoral Fellowship, ‘‘Adaptive Multimodal Learning for Robust Sensing and Recognition in Smart Cities’’ project fund, at Nanyang Technological University, Singapore.
- Published
- 2023
17. Upregulation of neurovascular communication through filamin abrogation promotes ectopic periventricular neurogenesis
- Author
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Alison A. Lanctot, Yan Guo, Shauna L Houlihan, and Yuanyi Feng
- Subjects
0301 basic medicine ,neurovascular ,Mouse ,Angiogenesis ,QH301-705.5 ,Science ,Filamins ,Neurogenesis ,Neovascularization, Physiologic ,Biology ,intermediate progenitor ,Filamin ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Mice ,Downregulation and upregulation ,medicine ,FLNA ,Animals ,Biology (General) ,Mice, Knockout ,General Immunology and Microbiology ,General Neuroscience ,Stem Cells ,EMT ,General Medicine ,filamin ,Neural stem cell ,Up-Regulation ,030104 developmental biology ,medicine.anatomical_structure ,Developmental Biology and Stem Cells ,nervous system ,Cerebral cortex ,Immunology ,Medicine ,cerebral cortex ,Neuron ,sense organs ,Neuroscience ,Neuroglia ,Research Article - Abstract
Neuronal fate-restricted intermediate progenitors (IPs) are derived from the multipotent radial glia (RGs) and serve as the direct precursors for cerebral cortical neurons, but factors that control their neurogenic plasticity remain elusive. Here we report that IPs’ neuron production is enhanced by abrogating filamin function, leading to the generation of periventricular neurons independent of normal neocortical neurogenesis and neuronal migration. Loss of Flna in neural progenitor cells (NPCs) led RGs to undergo changes resembling epithelial-mesenchymal transition (EMT) along with exuberant angiogenesis that together changed the microenvironment and increased neurogenesis of IPs. We show that by collaborating with β-arrestin, Flna maintains the homeostatic signaling between the vasculature and NPCs, and loss of this function results in escalated Vegfa and Igf2 signaling, which exacerbates both EMT and angiogenesis to further potentiate IPs’ neurogenesis. These results suggest that the neurogenic potential of IPs may be boosted in vivo by manipulating Flna-mediated neurovascular communication. DOI: http://dx.doi.org/10.7554/eLife.17823.001
- Published
- 2016
18. Developmental basis for filamin-A-associated myxomatous mitral valve disease
- Author
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Christopher A. Walsh, Kimberly Sauls, Richard L. Goodwin, Brett S. Harris, Robert A. Levine, Thierry Le Tourneau, Luigi Michele Pavone, Thomas A. Dix, Annemarieke de Vlaming, Sean Jesinkey, Jean-Jacques Schott, Susan A. Slaugenhaupt, Jean Mérot, Bin Zhou, Roger R. Markwald, Russell A. Norris, Katherine Williams, Andy Wessels, Scott Baldwin, Yuanyi Feng, Sauls, K., de Vlaming, A., Harris, B. S., Williams, K., Wessels, A., Levine, R. A., Slaugenhaupt, S. A., Goodwin, R. L., Pavone, LUIGI MICHELE, Merot, J., Schott, J. J., Le Tourneau, T., Dix, T., Jesinkey, S., Feng, Y., Walsh, C., Zhou, B., Baldwin, S., Markwald, R. R., and Norris, R. A.
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Heart Defects, Congenital ,Male ,Serotonin ,Pathology ,medicine.medical_specialty ,Physiology ,Filamins ,Disease ,Tryptophan Hydroxylase ,Matrix (biology) ,Biology ,Filamin ,Extracellular matrix ,Mice ,Contractile Proteins ,GTP-Binding Proteins ,Physiology (medical) ,Mitral valve ,medicine ,Animals ,Mitral valve prolapse ,Protein Glutamine gamma Glutamyltransferase 2 ,Pathological ,Mice, Knockout ,Serotonin Plasma Membrane Transport Proteins ,Mitral Valve Prolapse ,Transglutaminases ,Microfilament Proteins ,Genetic Diseases, X-Linked ,Original Articles ,medicine.disease ,Phenotype ,medicine.anatomical_structure ,Mitral Valve ,Cardiology and Cardiovascular Medicine ,Myxoma - Abstract
Aims We hypothesized that the structure and function of the mature valves is largely dependent upon how these tissues are built during development, and defects in how the valves are built can lead to the pathological progression of a disease phenotype. Thus, we sought to uncover potential developmental origins and mechanistic underpinnings causal to myxomatous mitral valve disease. We focus on how filamin-A, a cytoskeletal binding protein with strong links to human myxomatous valve disease, can function as a regulatory interface to control proper mitral valve development. Methods and results Filamin-A-deficient mice exhibit abnormally enlarged mitral valves during foetal life, which progresses to a myxomatous phenotype by 2 months of age. Through expression studies, in silico modelling, 3D morphometry, biochemical studies, and 3D matrix assays, we demonstrate that the inception of the valve disease occurs during foetal life and can be attributed, in part, to a deficiency of interstitial cells to efficiently organize the extracellular matrix (ECM). This ECM organization during foetal valve gestation is due, in part, to molecular interactions between filamin-A, serotonin, and the cross-linking enzyme, transglutaminase-2 (TG2). Pharmacological and genetic perturbations that inhibit serotonin-TG2-filamin-A interactions lead to impaired ECM remodelling and engender progression to a myxomatous valve phenotype. Conclusions These findings illustrate a molecular mechanism by which valve interstitial cells, through a serotonin, TG, and filamin-A pathway, regulate matrix organization during foetal valve development. Additionally, these data indicate that disrupting key regulatory interactions during valve development can set the stage for the generation of postnatal myxomatous valve disease.
- Published
- 2012
19. Loss of Microtubule-to-Actin Linkage Disrupts Cortical Development
- Author
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Yuanyi Feng and Ashley S. Pawlisz
- Subjects
Utrophin ,Duchenne muscular dystrophy ,Cell Cycle Proteins ,Biochemistry ,Basement Membrane ,Dystrophin ,Mice ,0302 clinical medicine ,Molecular Cell Biology ,Biology (General) ,Dystroglycans ,Mice, Knockout ,Cerebral Cortex ,0303 health sciences ,biology ,General Neuroscience ,Neural stem cell ,Cell biology ,Phenotype ,Synopsis ,General Agricultural and Biological Sciences ,Lissencephaly ,Microtubule-Associated Proteins ,Research Article ,QH301-705.5 ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Glycoprotein complex ,medicine ,Dystroglycan ,Genetics ,Animals ,Humans ,Biology ,030304 developmental biology ,General Immunology and Microbiology ,Cell Membrane ,medicine.disease ,Disease Models, Animal ,nervous system ,1-Alkyl-2-acetylglycerophosphocholine Esterase ,biology.protein ,Pikachurin ,sense organs ,030217 neurology & neurosurgery ,Malformations of Cortical Development, Group II ,Developmental Biology ,Neuroscience - Abstract
Lis1-Nde1 integrates cerebral cortical neurogenesis with neuronal migration by stabilizing the basal-lateral surface of radial glial cells., Radial glial cells (RGCs) are distinctive neural stem cells with an extraordinary slender bipolar morphology and dual functions as precursors and migration scaffolds for cortical neurons. Here we show a novel mechanism by which the Lis1-Nde1 complex maintains RGC functions through stabilizing the dystrophin/dystroglycan glycoprotein complex (DGC). A direct interaction between Nde1 and utrophin/dystrophin allows for the assembly of a multi-protein complex that links the cytoskeleton to the extracellular matrix of RGCs to stabilize their lateral membrane, cell-cell adhesion, and radial morphology. Lis1-Nde1 mutations destabilized the DGC and resulted in deformed, disjointed RGCs and disrupted basal lamina. Besides impaired RGC self-renewal and neuronal migration arrests, Lis1-Nde1 deficiencies also led to neuronal over-migration. Additional to phenotypic resemblances of Lis1-Nde1 with DGC, strong synergistic interactions were found between Nde1 and dystroglycan in RGCs. As functional insufficiencies of LIS1, NDE1, and dystroglycan all cause lissencephaly syndromes, our data demonstrated that a three-dimensional regulation of RGC's cytoarchitecture by the Lis1-Nde1-DGC complex determines the number and spatial organization of cortical neurons as well as the size and shape of the cerebral cortex., Author Summary The processes of neurogenesis and neuronal migration within the developing cerebral cortex must be tightly orchestrated to enable ordered generation and transportation of neurons to designated cortical layers. The mechanism by which these two processes are integrated remains elusive. Radial glial cells, the major neural stem cells in the developing brain, serve both as progenitors and migration scaffolds for cortical neurons as they migrate. The cortical developmental disease lissencephaly (smooth brain) is a result of defects in neurogenesis and neuronal migration, and is associated with the protein LIS1 and its binding partner NDE1. In this study, we show that several key players in human cerebral cortical development, including LIS1, NDE1, dystrophin, and dystroglycan, form a molecular complex to regulate cortical neurogenesis and neuronal migration in a mouse model. This multi-protein complex is active on the basal-lateral surface of radial glial cells, which is known to provide guidance to migrating neurons. When we depleted NDE1 in mice, dystrophin and dystroglycan were lost from the membrane and radial glial cells were deformed, indicating the importance of the multi-protein complex for proper cell morphology. This effect on morphology resulted in a loss of normal migration and cortical phenotypes similar to lissencephaly. Our findings suggest that genes that regulate the structure and function of the basal-lateral membrane of radial glial cells may integrate the dual functions of these cells and determine the size, shape, and function of the cerebral cortex.
- Published
- 2011
20. Opposing FlnA and FlnB interactions regulate RhoA activation in guiding dynamic actin stress fiber formation and cell spreading.
- Author
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Jianjun Hu, Jie Lu, Goyal, Akshay, Wong, Timothy, Lian, Gewei, Jingping Zhang, Hecht, Jonathan L., Yuanyi Feng, and Sheen, Volney L.
- Published
- 2017
- Full Text
- View/download PDF
21. Upregulation of neurovascular communication through filamin abrogation promotes ectopic periventricular neurogenesis.
- Author
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Houlihan, Shauna L., Lanctot, Alison A., Yan Guo, and Yuanyi Feng
- Published
- 2016
- Full Text
- View/download PDF
22. Filamin A (FLNA) is required for cell—cell contact in vascular development and cardiac morphogenesis.
- Author
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Yuanyi Feng, Ming Hui Chen, Moskowitz, Ivan P., Mendonza, Ashley M., Vidali, Luis, Nakamura, Fumihiko, Kwiatkowski, David J., and Walsh, Christopher A.
- Subjects
- *
CARDIOVASCULAR diseases , *GENETIC mutation , *GENETIC transformation , *CEREBRAL cortex , *BLOOD vessels , *MORPHOGENESIS - Abstract
Mutations in the human Filamin A (FLNA) gene disrupt neuronal migration to the cerebral cortex and cause cardiovascular defects. Complete loss of FIna in mice results in embryonic lethality with severe cardiac structural defects involving ventricles, atria, and outflow tracts, as well as widespread aberrant vascular patterning. Despite these widespread developmental defects, migration and motility of many cell types does not appear to be affected. Instead, FIna-null embryos display abnormal epithelial and endothelial organization and aberrant adherens junctions in developing blood vessels, heart, brain, and other tissues. Essential roles for FLNA in intercellular junctions provide a mechanism for the diverse developmental defects seen in patients with FLNA mutations. [ABSTRACT FROM AUTHOR]
- Published
- 2006
- Full Text
- View/download PDF
23. Cytoplasmic LEK1 is a regulator of microtubule function through its interaction with the LI51 pathway.
- Author
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Soukoulis, Victor, Reddy, Samyukta, Pooley, Ryan D., Yuanyi Feng, Walsh, Christopher A., and Bader, David M.
- Subjects
CYTOPLASM ,CELLS ,MEMBRANE proteins ,BLOOD proteins ,TRANSCRIPTION factors ,AMINO acids - Abstract
LIS1 and nuclear distribution gene E (NudE) are partner proteins in a conserved pathway regulating the function of dynein and microtubules. Here, we present data that cytoplasmic LEKI (cytLEKI), a large protein containing a spectrin repeat and multiple leucine zippers, is a component of this pathway through its direct inter- action with NudE, as determined by a yeast two-hybrid screen. We identified the binding domains in each molecule, and coimmuno-precipitation and colocalization studies confirmed the specificity of the interaction between cytLEKI and NudE. Confocal deconvolution analysis revealed that cytLEKI exhibits colocalization with endogenous NudE and with the known NudE binding partners, LISI and dynein. By localizing the NudE-binding domain of cytLEK1 to a small domain within the molecule, we were able to disrupt cytLEK1 function by using a dominant negative approach in addition to LEK1 knockdown and, thus, examine the role of the cytLEK1-NudE interaction in cells. Consistent with a defect in the LISI pathway, disruption of cytLEK1 function resulted in alteration of microtubule organization and cellular shape. The microtubule network of cells became tightly focused around the nucleus and resulted in a rounded cell shape. Additionally, cells exhibited a severe inability to repolymerize their microtubule networks after nocodazole challenge. Taken together, our studies revealed that cytLEK1 is essential for cellular functions regulated by the LISI pathway. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
- View/download PDF
24. The many faces of filamin: A versatile molecular scaffold for cell motility and signalling.
- Author
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Yuanyi Feng and Walsh, Christopher A.
- Subjects
- *
CYTOPLASM , *ACTIN , *BIOMOLECULES , *CARRIER proteins , *MOLECULAR biology , *CYTOLOGY - Abstract
Filamins were discovered as the first family of non-muscle actin-binding protein. They are lage cytoplasmic proteins that cross-link cortical actin into a dynamic three-dimensional structure. Filamins have also been reported to interact with a large number of cellular proteins of great functional diversity, suggesting that they are unusually versatile signalling scaffolds. More recently, genetic mutations in filamin A and B have been reported to cause a wide range of human diseases, suggesting that different diseases highlight distinct filamin interactions. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
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