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Plant phenotypic plasticity plays an important role in nitrogen (N) acquisition and use under nitrogen-limited conditions. However, this role has never been quantified as a function of N availability, leaving it unclear whether plastic responses should be considered as potential targets for selection. A combined modelling and experimentation approach was adopted to quantify the role of plasticity in N uptake and plant yield. Based on a greenhouse experiment we considered plasticity in two maize (Zea mays) traits: root-to-leaf biomass allocation ratio and emergence rate of axial roots. In a simulation experiment we individually enabled or disabled both plastic responses for maize stands grown across six N levels. Both plastic responses contributed to maintaining a higher N uptake, and plant productivity as N availability declined compared with stands in which plastic responses were disabled. We conclude that plastic responses quantified in this study may be a potential target trait in breeding programs for greater N uptake across N levels while it may only be important for the internal use of N under N-limited conditions in maize. Given the complexity of breeding for plastic responses, an a priori model analysis is useful to identify which plastic traits to target for enhanced plant performance. [ABSTRACT FROM AUTHOR]

Summary: Seed vigour, including rapid, uniform germination and robust seedling establishment under various field conditions, is becoming an increasingly essential agronomic trait for achieving high yield in crops. However, little is known about this important seed quality trait. In this study, we performed a genome‐wide association study to identify a key transcription factor ZmRap2.7, which regulates seed vigour through transcriptionally repressing expressions of three ABA signalling genes ZmPYL3, ZmPP2C and ZmABI5 and two phosphatidylethanolamine‐binding genes ZCN9 and ZCN10. In addition, ZCN9 and ZCN10 proteins could interact with ZmPYL3, ZmPP2C and ZmABI5 proteins, and loss‐of‐function of ZmRap2.7 and overexpression of ZCN9 and ZCN10 reduced ABA sensitivity and seed vigour, suggesting a complex regulatory network for regulation of ABA signalling mediated seed vigour. Finally, we showed that four SNPs in ZmRap2.7 coding region influenced its transcriptionally binding activity to the downstream gene promoters. Together with previously identified functional variants within and surrounding ZmRap2.7, we concluded that the distinct allelic variations of ZmRap2.7 were obtained independently during maize domestication and improvement, and responded separately for the diversities of seed vigour, flowering time and brace root development. These results provide novel genes, a new regulatory network and an evolutional mechanism for understanding the molecular mechanism of seed vigour. [ABSTRACT FROM AUTHOR]

Summary: Nitrate (NO3−) is crucial for optimal plant growth and development and often limits crop productivity under low availability. In comparison with model plant Arabidopsis, the molecular mechanisms underlying NO3− acquisition and utilization remain largely unclear in maize. In particular, only a few genes have been exploited to improve nitrogen use efficiency (NUE). Here, we demonstrated that NO3−‐inducible ZmNRT1.1B (ZmNPF6.6) positively regulated NO3−‐dependent growth and NUE in maize. We showed that the tandem duplicated proteoform ZmNRT1.1C is irrelevant to maize seedling growth under NO3− supply; however, the loss of function of ZmNRT1.1B significantly weakened plant growth under adequate NO3− supply under both hydroponic and field conditions. The 15N‐labelled NO3− absorption assay indicated that ZmNRT1.1B mediated the high‐affinity NO3−‐transport and root‐to‐shoot NO3− translocation. Transcriptome analysis further showed, upon NO3− supply, ZmNRT1.1B promotes cytoplasmic‐to‐nuclear shuttling of ZmNLP3.1 (ZmNLP8), which co‐regulates the expression of genes involved in NO3− response, cytokinin biosynthesis and carbon metabolism. Remarkably, overexpression of ZmNRT1.1B in modern maize hybrids improved grain yield under N‐limiting fields. Taken together, our study revealed a crucial role of ZmNRT1.1B in high‐affinity NO3− transport and signalling and offers valuable genetic resource for breeding N use efficient high‐yield cultivars. [ABSTRACT FROM AUTHOR]

High planting density is essential to increasing maize grain yield. However, single plants suffer from insufficient light under high planting density. Ammonium (NH4+) assimilation consumes less energy converted from radiation than nitrate (NO3−). It is hypothesized that a mixed NO3−/NH4+ supply is more important to improving plant growth and population productivity under high vs. low planting density. Maize plants were grown under hydroponic conditions at two planting densities (low density: 208 plants m−2 and high density: 667 plants m−2) and three nitrogen forms (nitrate only, 75/25NO3−/NH4+ and ammonium only). A significant interaction effect was found between planting density and N form on plant biomass. Compared to nitrate only, 75/25NO3−/NH4+ increased per-plant biomass by 44% under low density, but by 81% under high density. Treatment with 75/25NO3−/NH4+ increased plant ATP, photosynthetic rate, and carbon amount per plant by 31, 7, and 44% under low density, respectively, but by 51, 23, and 95% under high density. Accordingly, carbon level per plant under 75/25NO3−/NH4+ was improved, which increased leaf area, specific leaf weight and total root length, especially for high planting density, increased by 57, 17 and 63%, respectively. Furthermore, under low density, 75/25NO3−/NH4+ increased nitrogen uptake rate, while under high density, 75/25NO3−/NH4+ increased nitrogen, phosphorus, copper and iron uptake rates. By increasing energy use efficiency, an optimum NO3−/NH4+ ratio can improve plant growth and nutrient uptake efficiency, especially under high planting density. In summary, an appropriate supply of NH4+ in addition to nitrate can greatly improve plant growth and promote population productivity of maize under high planting density, and therefore a mixed N form is recommended for high-yielding maize management in the field.

SUMMARY: Seed number and harvesting ability in maize (Zea mays L.) are primarily determined by the architecture of female inflorescence, namely the ear. Therefore, ear morphogenesis contributes to grain yield and as such is one of the key target traits during maize breeding. However, the molecular networks of this highly dynamic and complex grain‐bearing inflorescence remain largely unclear. As a first step toward characterizing these networks, we performed a high‐spatio‐temporal‐resolution investigation of transcriptomes using 130 ear samples collected from developing ears with length from 0.1 mm to 19.0 cm. Comparisons of these mRNA populations indicated that these spatio‐temporal transcriptomes were clearly separated into four distinct stages stages I, II, III, and IV. A total of 23 793 genes including 1513 transcription factors (TFs) were identified in the investigated developing ears. During the stage I of ear morphogenesis, 425 genes were predicted to be involved in a co‐expression network established by eight hub TFs. Moreover, 9714 ear‐specific genes were identified in the seven kinds of meristems. Additionally, 527 genes including 59 TFs were identified as especially expressed in ear and displayed high temporal specificity. These results provide a high‐resolution atlas of gene activity during ear development and help to unravel the regulatory modules associated with the differentiation of the ear in maize. Significance Statement: This article will provide a full transcriptional landscape of maize ear during its whole development period. [ABSTRACT FROM AUTHOR]

Genotype-by-environment interaction (G-by-E) is a common but potentially problematic phenomenon in plant breeding. In this study, we investigated the genotypic performance and two measures of plasticity on a phenotypic and genetic level by assessing 234 maize doubled haploid lines from six populations for 15 traits in seven macro-environments with a focus on varying soil phosphorus levels. It was found intergenic regions contributed the most to the variation of phenotypic linear plasticity. For 15 traits, 124 and 31 quantitative trait loci (QTL) were identified for genotypic performance and phenotypic plasticity, respectively. Further, some genes associated with phosphorus use efficiency, such as Zm00001eb117170, Zm00001eb258520, and Zm00001eb265410, encode small ubiquitin-like modifier E3 ligase were identified. By significantly testing the main effect and G-by-E effect, 38 main QTL and 17 interaction QTL were identified, respectively, in which MQTL38 contained the gene Zm00001eb374120, and its effect was related to phosphorus concentration in the soil, the lower the concentration, the greater the effect. Differences in the size and sign of the QTL effect in multiple environments could account for G-by-E. At last, the superiority of G-by-E in genomic selection was observed. In summary, our findings will provide theoretical guidance for breeding P-efficient and broadly adaptable varieties. [ABSTRACT FROM AUTHOR]

Optimal plant growth and development rely on morphological and physiological adaptions of the root system to forage heterogeneously distributed nitrogen (N) in soils. Rice grows mainly in the paddy soil where ammonium (NH4+) is present as the major N source. Although root NH4+ foraging behaviors are expected to be agronomically relevant, the underlying mechanism remains largely unknown. Here, we showed that NH4+ supply transiently enhanced the high-affinity NH4+ uptake and stimulated lateral root (LR) branching and elongation. These synergistic physiological and morphological responses were closely related to NH4+-induced expression of NH4+ transporters OsAMT1;1 and OsAMT1;2 in roots. The two independent double mutants (dko) defective in OsAMT1;1 and OsAMT1;2 failed to induce NH4+ uptake and stimulate LR formation, suggesting that OsAMT1s conferred the substrate-dependent root NH4+ foraging. In dko plants, NH4+ was unable to activate the expression of OsPIN2 , and the OsPIN2 mutant (lra1) exhibited a strong reduction in NH4+-triggered LR branching, suggesting that the auxin pathway was likely involved in OsAMT1s-dependent LR branching. Importantly, OsAMT1s-dependent root NH4+ foraging behaviors facilitated rice growth and N acquisition under fluctuating NH4+ supply. These results revealed an essential role of OsAMT1s in synergizing root morphological and physiological processes, allowing for efficient root NH4+ foraging to optimize N capture under fluctuating N availabilities. [ABSTRACT FROM AUTHOR]