1. Multi-omics analysis reveals genetic architecture and local adaptation of coumarins metabolites in Populus
- Author
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Wenke Zhang, Zhuoying Jin, Rui Huang, Weixiong Huang, Lianzheng Li, Yuling He, Jiaxuan Zhou, Chongde Tian, Liang Xiao, Peng Li, Mingyang Quan, Deqiang Zhang, and Qingzhang Du
- Subjects
Coumarins ,mGWAS ,Local adaptation ,Drought stress ,Populus ,Botany ,QK1-989 - Abstract
Abstract Background Accumulation of coumarins plays key roles in response to immune and abiotic stress in plants, but the genetic adaptation basis of controlling coumarins in perennial woody plants remain unclear. Results We detected 792 SNPs within 334 genes that were significantly associated with the phenotypic variations of 15 single-metabolic traits and multiple comprehensive index, such as principal components (PCs) of coumarins metabolites. Expression quantitative trait locus mapping uncovered that 337 eQTLs associated with the expression levels of 132 associated genes. Selective sweep revealed 55 candidate genes have potential selective signature among three geographical populations, highlighting that the coumarins biosynthesis have been encountered forceful local adaptation. Furthermore, we constructed a genetic network of seven candidate genes that coordinately regulate coumarins biosynthesis, revealing the multiple regulatory patterns affecting coumarins accumulation in Populus tomentosa. Validation of candidate gene variations in a drought-tolerated population and DUF538 heterologous transformation experiments verified the function of candidate genes and their roles in adapting to the different geographical conditions in poplar. Conclusions Our study uncovered the genetic regulation of the coumarins metabolic biosynthesis of Populus, and offered potential clues for drought-tolerance evaluation and regional improvement in woody plants.
- Published
- 2024
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