1. Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci
- Author
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Vera H. Price, Li Bian, Tarek Yamany, Silke Redler, Markus M. Nöthen, Stefanie Heilmann, Bettina Blaumeiser, Ulrike Blume-Peytavi, Gina M. DeStefano, Raphael Clynes, Maria K. Hordinsky, Christopher I. Amos, Stephan Ripke, Roland Kruse, Tim Becker, Mark J. Daly, Paul I.W. de Bakker, Annemieke de Jong, Gerhard Lutz, Angela M. Christiano, Annette Lee, Madeliene Duvic, Hans Wolff, Androniki Menelaou, Hailiang Huang, Susanne Moebus, David A. Norris, David Altshuler, Peter K. Gregersen, Lynn Petukhova, Julian Mackay-Wiggan, Markus Böhm, and Regina C. Betz
- Subjects
Male ,Protein Conformation ,Medizin ,General Physics and Astronomy ,Genome-wide association study ,Mice ,HLA Antigens ,ATXN2 protein, human ,Ataxin-2 ,Oligonucleotide Array Sequence Analysis ,Skin ,Genetics ,Principal Component Analysis ,Multidisciplinary ,biology ,Bcl-2-Like Protein 11 ,Intracellular Signaling Peptides and Proteins ,LRRC32 protein, human ,3. Good health ,genetics [Apoptosis Regulatory Proteins] ,Bcl2l11 protein, mouse ,genetics [Membrane Proteins] ,Phenotype ,genetics [Ataxin-2] ,Female ,ddc:500 ,Engineering sciences. Technology ,Alopecia Areata ,Human leukocyte antigen ,Major histocompatibility complex ,Polymorphism, Single Nucleotide ,General Biochemistry, Genetics and Molecular Biology ,Article ,metabolism [Skin] ,Proto-Oncogene Proteins ,medicine ,Animals ,Humans ,Genetic Predisposition to Disease ,Allele ,genetics [Alopecia Areata] ,Alleles ,Genetic association ,Adaptor Proteins, Signal Transducing ,Autoimmune disease ,Membrane Proteins ,Proteins ,General Chemistry ,Transforming growth factor beta ,Alopecia areata ,medicine.disease ,genetics [Proteins] ,genetics [HLA Antigens] ,LNK protein, human ,BCL2L11 protein, human ,Microscopy, Fluorescence ,Case-Control Studies ,Immunology ,biology.protein ,genetics [Proto-Oncogene Proteins] ,Human medicine ,Apoptosis Regulatory Proteins ,Genome-Wide Association Study - Abstract
Alopecia areata (AA) is a prevalent autoimmune disease with 10 known susceptibility loci. Here we perform the first meta-analysis of research on AA by combining data from two genome-wide association studies (GWAS), and replication with supplemented ImmunoChip data for a total of 3,253 cases and 7,543 controls. The strongest region of association is the major histocompatibility complex, where we fine-map four independent effects, all implicating human leukocyte antigen-DR as a key aetiologic driver. Outside the major histocompatibility complex, we identify two novel loci that exceed the threshold of statistical significance, containing ACOXL/BCL2L11(BIM) (2q13); GARP (LRRC32) (11q13.5), as well as a third nominally significant region SH2B3(LNK)/ATXN2 (12q24.12). Candidate susceptibility gene expression analysis in these regions demonstrates expression in relevant immune cells and the hair follicle. We integrate our results with data from seven other autoimmune diseases and provide insight into the alignment of AA within these disorders. Our findings uncover new molecular pathways disrupted in AA, including autophagy/apoptosis, transforming growth factor beta/Tregs and JAK kinase signalling, and support the causal role of aberrant immune processes in AA.
- Published
- 2015
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