214 results on '"VerBerkmoes, Nathan C"'
Search Results
2. A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
3. Illuminating structural proteins in viral “dark matter” with metaproteomics
4. Twelve previously unknown phage genera are ubiquitous in global oceans
5. Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla
6. The temporal analysis of yeast exponential phase using shotgun proteomics as a fermentation monitoring technique
7. Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use
8. Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics
9. Enigmatic, ultrasmall, uncultivated Archaea
10. Proteogenomic Basis for Ecological Divergence of Closely Related Bacteria in Natural Acidophilic Microbial Communities
11. Characterizing a Model Human Gut Microbiota Composed of Members of Its Two Dominant Bacterial Phyla
12. Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes
13. Shotgun proteomic monitoring of Clostridium acetobutylicum during stationary phase of butanol fermentation using xylose and comparison with the exponential phase
14. Differential accumulation of form I RubisCO in Rhodopseudomonas palustris CGA010 under photoheterotrophic growth conditions with reduced carbon sources
15. Experimental approach for deep proteome measurements from small-scale microbial biomass samples
16. MS2Grouper: Group assessment and synthetic replacement of duplicate proteomic tandem mass spectra
17. ProRata: a quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation
18. Integrating experimental and computational approaches for the proteogenomic characterizations of microbial communities
19. MASPIC: intensity-based tandem mass spectrometry scoring scheme that improves peptide identification at high confidence
20. Evaluation of 'shotgun' proteomics for identification of biological threat agents in complex environmental matrixes: experimental simulations
21. The two-faced T cell epitope: Examining the host-microbe interface with JanusMatrix
22. Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community
23. Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation
24. Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
25. Mass spectrometric approaches for characterizing bacterial proteomes
26. Comparative shotgun proteomic analysis of Clostridium acetobutylicum from butanol fermentation using glucose and xylose
27. Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge
28. A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
29. Intact Protein Analysis for Site-Directed Mutagenesis Overexpression Products: Plasmid-Encoded R67 Dihydrofolate Reductase
30. Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation
31. Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing 'Leptospirillum rubarum' (group II) and 'Leptospirillum ferrodiazotrophum' (group III) bacteria in acid mine drainage biofilms
32. Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community
33. Stain-resolved community proteomics reveals that recombination shapes the genomes of acidophilic bacteria
34. Comparative Omics and Trait Analyses of Marine Pseudoalteromonas Phages Advance the Phage OTU Concept.
35. Environmental Effects of Nanoceria on Seed Production of Common Bean (Phaseolus vulgaris): A Proteomic Analysis.
36. Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont.
37. Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea.
38. Proteomic identification of mammalian cell surface derived glycosylphosphatidylinositol-anchored proteins through selective glycan enrichment.
39. Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.
40. Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease.
41. Phage-Induced Expression of CRISPR-Associated Proteins Is Revealed by Shotgun Proteomics in Streptococcus thermophilus.
42. Microbes in thawing permafrost: the unknown variable in the climate change equation.
43. Metal Affinity EnrichmentIncreases the Range andDepth of Proteome Identification for Extracellular Microbial Proteins.
44. Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses.
45. Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments.
46. Environmental proteomics of microbial plankton in a highly productive coastal upwelling system.
47. Analysis of Biostimulated Microbial Communities from Two Field Experiments Reveals Temporal and Spatial Differences in Proteome Profiles.
48. Posttranslational modification and sequence variation of redox-active proteins correlate with biofilm life cycle in natural microbial communities.
49. Cultivation and quantitative proteomic analyses of acidophilic microbial communities.
50. A high-throughput de novo sequencing approachfor shotgun proteomics using high-resolutiontandem mass spectrometry.
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