10 results on '"Tong Sun Kobilka"'
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2. Crystal structure of dopamine D1 receptor in complex with G protein and a non-catechol agonist
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Sebastian Kelm, Bingfa Sun, Inbar Fish, Matthew Ling-Hon Chu, Florence Lebon, Zara A. Sands, Martyn Wood, Dan Feng, Tong Sun Kobilka, Brian K. Kobilka, Silvia Lovera, Tom Ceska, and Anne Valade
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0301 basic medicine ,Agonist ,Models, Molecular ,medicine.drug_class ,G protein ,Protein Conformation ,Science ,General Physics and Astronomy ,In Vitro Techniques ,Molecular Dynamics Simulation ,Crystallography, X-Ray ,Ligands ,Protein Engineering ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Dopamine receptor D1 ,Receptor pharmacology ,In vivo ,Dopamine ,medicine ,Extracellular ,GTP-Binding Protein alpha Subunits, Gs ,Humans ,Receptor ,Protein Structure, Quaternary ,X-ray crystallography ,Multidisciplinary ,Binding Sites ,Chemistry ,Receptors, Dopamine D1 ,General Chemistry ,Ligand (biochemistry) ,Recombinant Proteins ,030104 developmental biology ,Biophysics ,Structural biology ,030217 neurology & neurosurgery ,medicine.drug ,Protein Binding - Abstract
Dopamine D1 receptor (D1R) is an important drug target implicated in many psychiatric and neurological disorders. Selective agonism of D1R are sought to be the therapeutic strategy for these disorders. Most selective D1R agonists share a dopamine-like catechol moiety in their molecular structure, and their therapeutic potential is therefore limited by poor pharmacological properties in vivo. Recently, a class of non-catechol D1R selective agonists with a distinct scaffold and pharmacological properties were reported. Here, we report the crystal structure of D1R in complex with stimulatory G protein (Gs) and a non-catechol agonist Compound 1 at 3.8 Å resolution. The structure reveals the ligand bound to D1R in an extended conformation, spanning from the orthosteric site to extracellular loop 2 (ECL2). Structural analysis reveals that the unique features of D1R ligand binding pocket explains the remarkable selectivity of this scaffold for D1R over other aminergic receptors, and sheds light on the mechanism for D1R activation by the non-catechol agonist., Recently, a class of non-catechol Dopamine D1 receptor (D1R) selective agonists with novel scaffold and improved pharmacological properties were reported. Here, authors report the crystal structure of D1R in complex with stimulatory G protein (Gs) and a non-catechol agonist Compound 1 which explains the selectivity of this scaffold for D1R over other aminergic receptors and the mechanism of activating D1R.
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- 2021
3. Cryo-EM structure of the activated GLP-1 receptor in complex with G protein
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Matthew Ling-Hon Chu, Jeffrey T. Tarrasch, Dan Feng, Qianhui Qu, Hongli Hu, Shane Li, Georgios Skiniotis, Brian K. Kobilka, Bingfa Sun, Yan Zhang, and Tong Sun Kobilka
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Models, Molecular ,0301 basic medicine ,Protein domain ,Glucagon-Like Peptide-1 Receptor ,Article ,03 medical and health sciences ,0302 clinical medicine ,Protein Domains ,Glucagon-Like Peptide 1 ,GTP-Binding Protein alpha Subunits, Gs ,Animals ,5-HT5A receptor ,Receptor ,Glucagon-like peptide 1 receptor ,G protein-coupled receptor ,G protein-coupled receptor kinase ,Multidisciplinary ,Chemistry ,Cryoelectron Microscopy ,Transmembrane protein ,Cell biology ,Transmembrane domain ,030104 developmental biology ,Rabbits ,hormones, hormone substitutes, and hormone antagonists ,030217 neurology & neurosurgery - Abstract
Glucagon-like peptide 1 (GLP-1) is a hormone with essential roles in regulating insulin secretion, carbohydrate metabolism and appetite. GLP-1 effects are mediated through binding to the GLP-1 receptor (GLP-1R), a class B G-protein-coupled receptor (GPCR) that signals primarily through the stimulatory G protein Gs. Class B GPCRs are important therapeutic targets; however, our understanding of their mechanism of action is limited by the lack of structural information on activated and full-length receptors. Here we report the cryo-electron microscopy structure of the peptide-activated GLP-1R-Gs complex at near atomic resolution. The peptide is clasped between the N-terminal domain and the transmembrane core of the receptor, and further stabilized by extracellular loops. Conformational changes in the transmembrane domain result in a sharp kink in the middle of transmembrane helix 6, which pivots its intracellular half outward to accommodate the α5-helix of the Ras-like domain of Gs. These results provide a structural framework for understanding class B GPCR activation through hormone binding.
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- 2017
4. Structure of the δ-opioid receptor bound to naltrindole
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Brian K. Kobilka, Sébastien Granier, Foon Sun Thian, Andrew C. Kruse, William I. Weis, Aashish Manglik, and Tong Sun Kobilka
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0303 health sciences ,Multidisciplinary ,Chemistry ,medicine.drug_class ,Neuropeptide FF receptor ,Pharmacology ,JDTic ,Article ,3. Good health ,OGFr ,03 medical and health sciences ,Nociceptin receptor ,chemistry.chemical_compound ,0302 clinical medicine ,Naltrindole ,Opioid receptor ,medicine ,Opioid peptide ,030217 neurology & neurosurgery ,030304 developmental biology ,G protein-coupled receptor ,medicine.drug - Abstract
The X-ray crystal structure of the mouse δ-opioid receptor in complex with the subtype-selective antagonist naltrindole is reported. Four papers in this issue of Nature present the long-awaited high-resolution crystal structures of the four known opioid receptors in ligand-bound conformations. These G-protein-coupled receptors are the targets of a broad range of drugs, including painkillers, antidepressants, anti-anxiety agents and anti-addiction medications. Brian Kobilka’s group reports the crystal structure of the µ-opioid receptor bound to a morphinan antagonist and the δ-opioid receptor bound to naltrindole. Raymond Stevens’ group reports on the κ-opioid receptor bound to the selective antagonist JDTic, and the nociceptin/orphanin FQ receptor bound to a peptide mimetic. In an associated News and Views, Marta Filizola and Lakshmi Devi discuss the implications of these landmark papers for research on the mechanisms underlying receptor function and drug development. The opioid receptor family comprises three members, the µ-, δ- and κ-opioid receptors, which respond to classical opioid alkaloids such as morphine and heroin as well as to endogenous peptide ligands like endorphins. They belong to the G-protein-coupled receptor (GPCR) superfamily, and are excellent therapeutic targets for pain control. The δ-opioid receptor (δ-OR) has a role in analgesia, as well as in other neurological functions that remain poorly understood1. The structures of the µ-OR and κ-OR have recently been solved2,3. Here we report the crystal structure of the mouse δ-OR, bound to the subtype-selective antagonist naltrindole. Together with the structures of the µ-OR and κ-OR, the δ-OR structure provides insights into conserved elements of opioid ligand recognition while also revealing structural features associated with ligand-subtype selectivity. The binding pocket of opioid receptors can be divided into two distinct regions. Whereas the lower part of this pocket is highly conserved among opioid receptors, the upper part contains divergent residues that confer subtype selectivity. This provides a structural explanation and validation for the ‘message–address’ model of opioid receptor pharmacology4,5, in which distinct ‘message’ (efficacy) and ‘address’ (selectivity) determinants are contained within a single ligand. Comparison of the address region of the δ-OR with other GPCRs reveals that this structural organization may be a more general phenomenon, extending to other GPCR families as well.
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- 2012
5. Crystal Structure of the β2Adrenergic Receptor-Gs protein complex
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Brian T. DeVree, Ka Young Chung, Yaozhong Zou, William I. Weis, Foon Sun Thian, Brian K. Kobilka, Jan Steyaert, Andrew C. Kruse, Els Pardon, Jesper Mosolff Mathiesen, Georgios Skiniotis, Joseph A. Lyons, Samuel H. Gellman, Martin Caffrey, Diane M. Calinski, Tong Sun Kobilka, Syed T. A. Shah, Pil Seok Chae, Søren G. F. Rasmussen, Roger K. Sunahara, Structural Biology Brussels, and Department of Bio-engineering Sciences
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Models, Molecular ,Gs alpha subunit ,Biology ,Crystallography, X-Ray ,Article ,5-HT7 receptor ,Beta-1 adrenergic receptor ,03 medical and health sciences ,0302 clinical medicine ,GPCR ,Heterotrimeric G protein ,Catalytic Domain ,GTP-Binding Protein alpha Subunits, Gs ,Animals ,structural biology ,Adrenergic beta-2 Receptor Agonists ,030304 developmental biology ,G alpha subunit ,G protein-coupled receptor ,0303 health sciences ,Multidisciplinary ,Cell biology ,Rats ,Enzyme Activation ,Multiprotein Complexes ,Beta-2 adrenergic receptor ,cAMP-dependent pathway ,Cattle ,Receptors, Adrenergic, beta-2 ,Crystallization ,030217 neurology & neurosurgery ,Protein Binding - Abstract
G protein-coupled receptors (GPCRs) are responsible for the majority of cellular responses to hormones and neurotransmitters as well as the senses of sight, olfaction and taste. The paradigm of GPCR signalling is the activation of a heterotrimeric GTP binding protein (G protein) by an agonist-occupied receptor. The β(2) adrenergic receptor (β(2)AR) activation of Gs, the stimulatory G protein for adenylyl cyclase, has long been a model system for GPCR signalling. Here we present the crystal structure of the active state ternary complex composed of agonist-occupied monomeric β(2)AR and nucleotide-free Gs heterotrimer. The principal interactions between the β(2)AR and Gs involve the amino- and carboxy-terminal α-helices of Gs, with conformational changes propagating to the nucleotide-binding pocket. The largest conformational changes in the β(2)AR include a 14 Å outward movement at the cytoplasmic end of transmembrane segment 6 (TM6) and an α-helical extension of the cytoplasmic end of TM5. The most surprising observation is a major displacement of the α-helical domain of Gαs relative to the Ras-like GTPase domain. This crystal structure represents the first high-resolution view of transmembrane signalling by a GPCR.
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- 2011
6. Crystal structure of the adenosine A2A receptor bound to an antagonist reveals a potential allosteric pocket.
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Bingfa Sun, Bachhawat, Priti, Matthew Ling-Hon Chu, Tong Sun Kobilka, Kobilka, Brian K., Wood, Martyn, Ceska, Tom, Sands, Zara A., Mercier, Joel, and Lebon, Florence
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ADENOSINES ,ALLOSTERIC regulation ,DRUG therapy for Parkinson's disease ,PARKINSON'S disease treatment ,PARKINSON'S disease diagnosis ,G protein coupled receptors - Abstract
The adenosine A
2A receptor (A2A R) has long been implicated in cardiovascular disorders. As more selective A2A R ligands are being identified, its roles in other disorders, such as Parkinson's disease, are starting to emerge, and A2A R antagonists are important drug candidates for nondopaminergic anti-Parkinson treatment. Here we report the crystal structure of A2A receptor bound to compound 1 (Cmpd-1), a novel A2A R/N-methyl D-aspartate receptor subtype 2B (NR2B) dual antagonist and potential anti-Parkinson candidate compound, at 3.5 Å resolution. The A2A receptor with a cytochrome b562-RIL (BRIL) fusion (A2A R-BRIL) in the intracellular loop 3 (ICL3) was crystallized in detergent micelles using vapor-phase diffusion. Whereas A2A R-BRIL bound to the antagonist ZM241385 has previously been crystallized in lipidic cubic phase (LCP), structural differences in the Cmpd-1-bound A2A R-BRIL prevented formation of the lattice observed with the ZM241385-bound receptor. The crystals grew with a type II crystal lattice in contrast to the typical type I packing seen from membrane protein structures crystallized in LCP. Cmpd-1 binds in a position that overlaps with the native ligand adenosine, but its methoxyphenyl group extends to an exosite not previously observed in other A2A R structures. Structural analysis revealed that Cmpd-1 binding results in the unique conformations of two tyrosine residues, Tyr91.35 and Tyr2717.36, which are critical for the formation of the exosite. The structure reveals insights into antagonist binding that are not observed in other A2A R structures, highlighting flexibility in the binding pocket that may facilitate the development of A2A R-selective compounds for the treatment of Parkinson's disease. [ABSTRACT FROM AUTHOR]- Published
- 2017
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7. Ligand-specific regulation of the extracellular surface of a G-protein-coupled receptor.
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Bokoch, Michael P., Yaozhong Zou, Rasmussen, Søren G. F., Liu, Corey W., Nygaard, Rie, Rosenbaum, Daniel M., Fung, Juan José, Hee-Jung Choi, Foon Sun Thian, Tong Sun Kobilka, Puglisi, Joseph D., Weis, William I., Pardo, Leonardo, Prosser, R. Scott, Mueller, Luciano, and Kobilka, Brian K.
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NEURAL transmission ,TARGETED drug delivery ,SPECTRUM analysis ,NUCLEAR magnetic resonance spectroscopy ,LIGANDS (Biochemistry) ,ENDOCRINE glands ,ADRENERGIC receptors ,HORMONES ,NEUROTRANSMITTERS - Abstract
G-protein-coupled receptors (GPCRs) are seven-transmembrane proteins that mediate most cellular responses to hormones and neurotransmitters. They are the largest group of therapeutic targets for a broad spectrum of diseases. Recent crystal structures of GPCRs have revealed structural conservation extending from the orthosteric ligand-binding site in the transmembrane core to the cytoplasmic G-protein-coupling domains. In contrast, the extracellular surface (ECS) of GPCRs is remarkably diverse and is therefore an ideal target for the discovery of subtype-selective drugs. However, little is known about the functional role of the ECS in receptor activation, or about conformational coupling of this surface to the native ligand-binding pocket. Here we use NMR spectroscopy to investigate ligand-specific conformational changes around a central structural feature in the ECS of the β
2 adrenergic receptor: a salt bridge linking extracellular loops 2 and 3. Small-molecule drugs that bind within the transmembrane core and exhibit different efficacies towards G-protein activation (agonist, neutral antagonist and inverse agonist) also stabilize distinct conformations of the ECS. We thereby demonstrate conformational coupling between the ECS and the orthosteric binding site, showing that drugs targeting this diverse surface could function as allosteric modulators with high subtype selectivity. Moreover, these studies provide a new insight into the dynamic behaviour of GPCRs not addressable by static, inactive-state crystal structures. [ABSTRACT FROM AUTHOR]- Published
- 2010
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8. Structural Insights into the Dynamic Process of β2-Adrenergic Receptor Signaling
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Aashish Manglik, Tong Sun Kobilka, Daniel Hilger, Wayne L. Hubbell, Brian K. Kobilka, Tae Hun Kim, Foon Sun Thian, Zhongyu Yang, R. Scott Prosser, Christian Altenbach, Matthieu Masureel, and Michael T. Lerch
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Models, Molecular ,Magnetic Resonance Spectroscopy ,Cell ,Medical and Health Sciences ,01 natural sciences ,0302 clinical medicine ,Models ,Receptors ,Receptor ,0303 health sciences ,Biological Sciences ,Adrenergic beta-Agonists ,Cell biology ,medicine.anatomical_structure ,Biochemistry ,Adrenergic ,Signal transduction ,Intracellular ,Signal Transduction ,G protein ,Nuclear Magnetic Resonance ,1.1 Normal biological development and functioning ,Allosteric regulation ,Molecular Sequence Data ,beta-2 ,Biology ,010402 general chemistry ,General Biochemistry, Genetics and Molecular Biology ,Article ,β2 adrenergic receptor ,03 medical and health sciences ,Underpinning research ,medicine ,Extracellular ,Humans ,Amino Acid Sequence ,Process (anatomy) ,Nuclear Magnetic Resonance, Biomolecular ,030304 developmental biology ,G protein-coupled receptor ,Biochemistry, Genetics and Molecular Biology(all) ,Neurosciences ,Isoproterenol ,Molecular ,0104 chemical sciences ,Benzoxazines ,Cytoplasm ,Biophysics ,Generic health relevance ,Receptors, Adrenergic, beta-2 ,030217 neurology & neurosurgery ,Biomolecular ,Developmental Biology - Abstract
G-protein-coupled receptors (GPCRs) transduce signals from the extracellular environment to intracellular proteins. To gain structural insight into the regulation of receptor cytoplasmic conformations by extracellular ligands during signaling, we examine the structural dynamics of the cytoplasmic domain of the β2-adrenergic receptor (β2AR) using (19)F-fluorine NMR and double electron-electron resonance spectroscopy. These studies show that unliganded and inverse-agonist-bound β2AR exists predominantly in two inactive conformations that exchange within hundreds of microseconds. Although agonists shiftthe equilibrium toward a conformation capable of engaging cytoplasmic G proteins, they do so incompletely, resulting in increased conformational heterogeneity and the coexistence of inactive, intermediate, and active states. Complete transition to the active conformation requires subsequent interaction with a G protein or an intracellular G protein mimetic. These studies demonstrate a loose allosteric coupling of the agonist-binding site and G-protein-coupling interface that may generally be responsible for the complex signaling behavior observed for many GPCRs.
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9. GPCR Engineering Yields High-Resolution Structural Insights into β2-Adrenergic Receptor Function.
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Rosenbaum, Daniel M., Cherezov, Vadim, Hanson, Michael A., Rasmussen, Søren G. F., Foon Sun Thian, Tong Sun Kobilka, Hee-Jung Choi, Xiao-Jie Yao, Weis, William I., Stevens, Raymond C., and Kobilka, Brian K.
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ADRENERGIC receptors , *G proteins , *NEUROTRANSMITTERS , *HORMONES , *CRYSTALLIZATION , *LYSOZYMES - Abstract
The β2-adrenergic receptor (β2AR) is a well-studied prototype for heterotrimeric guanine nucleotide—binding protein (G protein)—coupled receptors (GPCRs) that respond to diffusible hormones and neurotransmitters. To overcome the structural flexibility of the β2AR and to facilitate its crystallization, we engineered a β2AR fusion protein in which T4 lysozyme (T4L) replaces most of the third intracellular loop of the GPCR (β2AR-T4L") and showed that this protein retains near-native pharmacologic properties. Analysis of adrenergic receptor ligand-binding mutants within the context of the reported high-resolution structure of β2AR-T4L provides insights into inverse-agonist binding and the structural changes required to accommodate catecholamine agonists. Amino acids known to regulate receptor function are linked through packing interactions and a network of hydrogen bonds, suggesting a conformational pathway from the ligand-binding pocket to regions that interact with G proteins. [ABSTRACT FROM AUTHOR]
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- 2007
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10. Probing the β2 Adrenoceptor Binding Site with Catechol Reveals Differences in Binding and Activation by Agonists and Partial Agonists.
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Swaminath, Gayathri, Deupi, Xavier, Tae Weon Lee, Wen Zhu, Foon Sun Thian, Tong Sun Kobilka, and Kobilka, Brian
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G proteins , *MEMBRANE proteins , *CELL receptors , *ADRENERGIC receptors , *BIOCHEMISTRY , *CATECHOL , *BIOMOLECULES - Abstract
The β2 adrenergic receptor (β2AR) is a prototypical family A G protein-coupled receptor (GPCR) and an excellent model system for studying the mechanism of GPCR activation. The β2AR agonist binding site is well characterized, and there is a wealth of structurally related ligands with functionally diverse properties. In the present study, we use catechol (1,2-benzenediol, a structural component of catecholamine agonists) as a molecular probe to identify mechanistic differences between β2AR activation by catecholamine agonists, such as isoproterenol, and by the structurally related non-catechol partial agonist salbutamol. Using biophysical and pharmacologic approaches, we show that the aromatic ring of salbutamol binds to a different site on the β2AR than the aromatic ring of catecholamines. This difference is important in receptor activation as it has been hypothesized that the aromatic ring of catecholamines plays a role in triggering receptor activation through inter. actions with a conserved cluster of aromatic residues in the sixth transmembrane segment by a rotamer toggle switch mechanism. Our experiments indicate that the aromatic ring of salbutamol does not activate this mechanism either directly or indirectly. Moreover, the non-catechol ring of partial agonists does not interact optimally with serine residues in the fifth transmembrane helix that have been shown to play an important role in activation by catecholamines. These results demonstrate unexpected differences in binding and activation by structurally similar agonists and partial agonists. Moreover, they provide evidence that activation of a GPCR is a multistep process that can be dissected into its component parts using agonist fragments. [ABSTRACT FROM AUTHOR]
- Published
- 2005
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