114 results on '"Thiagarajan D"'
Search Results
2. Health-related quality of life in children with cerebral palsy and their families
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Dobhal, Manjusha, Juneja, Monica, Jain, Rahul, Sairam, Smitha, and Thiagarajan, D.
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- 2014
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3. Immune Response in Goats to Different Payloads of FMDV Monovalent Vaccine: Protection Against Virulent Challenge and Development of Carrier Status
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Madhanmohan, M., Nagendrakumar, S. B., Santhakumar, P., Thiagarajan, D., Lakshmi Narasu, M., and Srinivasan, V. A.
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- 2011
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4. Cloning, expression and evaluation of the efficacy of a recombinant Eimeria tenella sporozoite antigen in birds
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Mohana Subramanian, B., Sriraman, R., Hanumantha Rao, N., Raghul, J., Thiagarajan, D., and Srinivasan, V.A.
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- 2008
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5. Experimental Transmission of Foot-and-Mouth Disease among Indian Buffalo ( Bubalus bubalis) and from Buffalo to Cattle
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Maroudam, V., Nagendrakumar, S.B., Madhanmohan, M., Santhakumar, P., Thiagarajan, D., and Srinivasan, V.A.
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- 2008
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6. Identification of cross-contaminated animal cells by PCR and isoenzyme analysis
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Ramya, R., Nagarajan, T., Sivakumar, V., Senthilkumar, R. L., Bala Obulapathi, B., Thiagarajan, D., and Srinivasan, V. A.
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- 2009
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7. Analysis of VP2 gene sequences of canine parvovirus isolates in India
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Chinchkar, S. R., Mohana Subramanian, B., Hanumantha Rao, N., Rangarajan, P. N., Thiagarajan, D., and Srinivasan, V. A.
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- 2006
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8. A simple immuno-capture ELISA to estimate rabies viral glycoprotein antigen in vaccine manufacture
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Nagarajan, T., Reddy, G.S., Mohana Subramanian, B., Rajalakshmi, S., Thiagarajan, D., Tordo, N., Jallet, C., and Srinivasan, V.A.
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- 2006
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9. Ascorbic acid supplementation improved antibody response to infectious bursal disease vaccination in chickens
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Amakye-Anim, J., Lin, T.L., Hester, P.Y., Thiagarajan, D., Watkins, B.A., and Wu, C.C.
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- 2000
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10. Immunoglobulin G1 Antibodies Against Phosphorylcholine Are Associated With Protection in Systemic Lupus Erythematosus and Atherosclerosis: Potential Underlying Mechanisms.
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Thiagarajan, D., Fiskesund, R., Frostegård, A., Steen, J., Rahman, M., Vikström, M., Lundström, S., and Frostegård, J.
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IMMUNOGLOBULIN G ,IMMUNOGLOBULINS ,MACROPHAGES ,MONOCLONAL antibodies ,LIPOPOLYSACCHARIDES - Abstract
Objective: Immunoglobulin M antibodies against phosphorylcholine (anti‐PCs) may be protective in atherosclerosis, cardiovascular disease (CVD), and systemic lupus erythematosus (SLE). We study immunoglobulin G1 (IgG1) and immunoglobulin G2 (IgG2) anti‐PCs, with a focus on atherosclerosis and SLE. Methods: We determined anti‐PCs by using the enzyme‐linked immunosorbent assay in 116 patients with SLE and 110 age‐ and sex‐matched controls. For functional studies, we used three in‐house–generated, fully human monoclonal IgG1 anti‐PCs (A01, D05, and E01). Apoptosis was induced in Jurkat T cells and preincubated with A01, D05, E01, or IgG1 isotype control, and effects on efferocytosis by human macrophages were studied. Anti‐PC peptide/protein characterization was determined using a proteomics de novo sequencing approach. Results: IgG1, but not IgG2, anti‐PC levels were higher among patients with SLE (P = 0.02). IgG1 anti‐PCs were negatively associated with Systemic Lupus International Collaborating Clinics (SLICC) damage index and Systemic Lupus Erythematosus Disease Activity Index (SLEDAI) scores (odds ratio [OR]: 2.978 [confidence interval (CI): 0.876‐10.098] and OR: 5.108 [CI 1.3‐20.067], respectively) and negatively associated with CVD, atherosclerotic plaques, and echolucent plaques (potentially vulnerable plaques), but the association for the two former was not significant after controlling for confounders. D05 had a maximum effect on macrophage efferocytosis efficiency, followed by A01 and E01. The monoclonal antibodies showed differential binding specificity to PC and PC‐associated neoepitopes. A peptide analysis showed a difference in the complementarity‐determining region 3 of the three IgG1 anti‐PC clones that are crucial for recognition of PC on apoptotic cell surfaces and other neoepitopes. Conclusion: IgG1 anti‐PCs are negatively associated with disease activity and disease damage in SLE, but the negative association with CVD is also dependent on confounding risk factors. One potential underlying mechanism could be increased clearance of dead cells. What is already known about this subject? •Low levels of immunoglobulin M antibodies against phosphorylcholine (anti‐PCs) is more common in patients with systemic lupus erythematosus (SLE) compared with controls and is associated with increased prevalence of vulnerable plaque among patients with SLE. What does this study add? Immunoglobulin G1 (IgG1) anti‐PCs are negatively associated with disease activity, disease damage, cardiovascular disease, and measures of atherosclerosis in SLE.We have produced in‐house, fully human monoclonal antibodies of the IgG1 isotype that increase apoptotic cell uptake efficiently and reduce inflammation induced by lipopolysaccharide. Effects varied depending on the clone used.A peptide analysis showed a difference in the complementarity‐determining region 3 of the three IgG1 anti‐PC clones that are crucial for the recognition of phosphorylcholine (PC) on apoptotic cell surfaces and other neoepitopes. How might this impact clinical practice or future developments? Measurement of IgG1 anti‐PCs, along with other autoantibodies, could improve prevention in patients with SLE with vascular implications.Anti‐PCs could be developed as a novel treatment in SLE, either as monoclonal antibodies or as a vaccine with PC. [ABSTRACT FROM AUTHOR]
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- 2020
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11. Phenotypic features of vascular calcification in chronic kidney disease.
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Dai, L., Debowska, M., Lukaszuk, T., Bobrowski, L., Barany, P., Söderberg, M., Thiagarajan, D., Frostegård, J., Wennberg, L., Lindholm, B., Qureshi, A. R., Waniewski, J., and Stenvinkel, P.
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CHRONIC kidney failure ,KIDNEY calcification ,KIDNEY exchange ,ABSOLUTE value ,BONE metabolism ,CHRONICALLY ill - Abstract
Background: Patients with chronic kidney disease stage 5 (CKD5) are predisposed to vascular calcification (VC), but the combined effect of factors associated with VC was sparsely investigated. We applied the relaxed linear separability (RLS) feature selection model to identify features that concomitantly associate with VC in CKD5 patients.Methods: Epigastric arteries collected during surgery from living donor kidney transplant recipients were examined to score the histological extent of medial VC. Sixty-two phenotypic features in 152 patients were entered into RLS model to differentiate between no-minimal VC (n = 93; score 0-1) and moderate-extensive VC (n = 59; score 2-3). The subset of features associated with VC was selected on the basis of cross-validation procedure. The strength of association of the selected features with VC was expressed by the absolute value of 'RLS factor'.Results: Among 62 features, a subset of 17 features provided optimal prediction of VC with 89% of patients correctly classified into their groups. The 17 features included traditional risk factors (diabetes, age, cholesterol, BMI and male sex) and markers of bone metabolism, endothelial function, metabolites, serum antibodies and mitochondrial-derived peptide. Positive RLS factors range from 1.26 to 4.05 indicating features associated with increased risk of VC, and negative RLS factors range from -0.95 to -1.83 indicating features associated with reduced risk of VC.Conclusion: The RLS model identified 17 features including novel biomarkers and traditional risk factors that together concomitantly associated with medial VC. These results may inform further investigations of factors promoting VC in CKD5 patients. [ABSTRACT FROM AUTHOR]- Published
- 2020
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12. Optimum conditions for in vitro chicken IL-2 production and its in vivo role in Newcastle disease vaccinated chickens
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Thiagarajan, D., Ram, G.C., and Bansal, M.P.
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- 1999
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13. Enhanced corrosion inhibition effect of sodium tartrate on copper in potable water
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Ramasamy Sudhakaran, Thiagarajan Deepa, Munusamy Thirumavalavan, Sharmila Queenthy Sabarimuthu, Sellamuthu Babu, Thayuman Asokan, Abdulrahman I. Almansour, Pandian Bothi Raja, and Karthikeyan Perumal
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Corrosion ,Copper ,Electrochemical studies ,SEM ,EDAX ,AFM ,Science (General) ,Q1-390 - Abstract
In this study we have reported sodium tartrate (ST) and Zn2+ as the potential mixed corrosion inhibitors for copper corrosion in drinking water, by using electrochemical impedance and polarization techniques. The results of potentio-dynamic polarization indicated that sodium tartrate could be used as mixed type inhibitor with Zn2+. ST was found to be 92% effective for slowing down both the anodic and cathodic reaction rates. It was additionally found that ST could coat the surface of copper to prevent it from conducting electricity. As the inhibitor concentration increased, the stability of the formed protective layer was also improved. The results obtained from studies like SEM, EDAX, AFM, and water contact angle clearly indicated the development of a barrier by inducing the lotus effect on copper surface. The water contact angle measurement results suggested that the coating formed in the presence of inhibitor was superhydrophobic, and the surface was homogeneous.
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- 2023
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14. Trisodium citrate as a potential and eco-friendly corrosion inhibitor of copper in potable water
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Ramasamy Sudhakaran, Thiagarajan Deepa, Munusamy Thirumavalavan, Sharmila Queenthy Sabarimuthu, Sellamuthu Babu, Thayuman Asokan, Pandian Bothi Raja, Natarajan Arumugam, Karthikeyan Perumal, Sinouvassane Djearamane, Lai-Hock Tey, and Saminathan Kayarohanam
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Corrosion ,Sodium citrate ,Binary inhibitor ,Super hydrophobicity ,Electrochemical studies ,Science (General) ,Q1-390 - Abstract
In this work, the mixture of trisodium cittrate and Zn2+ was used as binary (hetero type) inhibitor for corrosion inhibition of copper metal in potable water. The binary inhibitor system (Zn2+ and trisodium citrate) was used to form hydrophobic surfaces on copper submerged in potable water. Water contact angle (WCA) was found to be 155°4° when the inhibitor was present, whereas it was 84°2° when there was no inhibitor. These observations suggested the development of superhydrophobic layer on the surface of copper in drinkable water. Electrochemical impedance spectroscopy (EIS – AC mode), and potentiodynamic polarization (DC mode) experiments conveyed that the copper surface could be protected by utilizing the mixture of trisodium citrate and Zn2+ in potable water. The morphological studies including SEM (coupled with EDX), AFM, and WCA were evidenced the formulation of a hetero-type inhibitor for the corrosion inhibition of copper in potable water. In this study, the decline in the double-layer capacitance and the rise in the charge transfer resistance were due to the adsorption of inhibitor confirming the development of protective layer, which EIS, SEM, EDX, AFM, and WCA studies also supported. Thus, there was a synergism observed between TSC and Zn2+, and the formulation consisting of TSC and Zn2+ provided 83% of inhibition efficiency (IEp). So, it was suggested that the approach reported in this study could be a simple method for obtaining the superhydrophobic copper surface.
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- 2023
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15. Difference in the level of interferon gamma mRNA transcripts on stimulation of cattle and buffalo mononuclear cells with foot and mouth disease virus-antigen: A possible role of sequence variation in promoter region
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Mohana Subramanian, B., Senthuran, S., Dhinakar Raj, G., Tirumurugaan, K.G., and Thiagarajan, D.
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- 2011
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16. Genetic characterization of Indian type O FMD virus 3A region in context with host cell preference
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Maroudam, V., Nagendrakumar, S.B., Rangarajan, P.N., Thiagarajan, D., and Srinivasan, V.A.
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- 2010
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17. Phylogenetic analysis of nucleoprotein gene of dog rabies virus isolates from Southern India
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Nagarajan, T., Nagendrakumar, S.B., Mohanasubramanian, B., Rajalakshmi, S., Hanumantha, N.R., Ramya, R., Thiagarajan, D., and Srinivasan, V.A.
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- 2009
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18. Fully human monoclonal antibodies to phosphorylcholine inhibit tnf-induced IL-6 and VCAM-1 in human umbilical venous endothelial cells
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Thiagarajan, D., Fiskesund, R., Steen, J., Su, J., Malmström, V., Frostegård, J., and Frostegård, A.
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- 2014
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19. Human Monoclonal Antibody and Vaccine Approaches to Prevent Human Rabies.
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Compans, Richard W., Cooper, Max D., Honjo, Tasuku, Koprowski, Hilary, Melchers, Fritz, Oldstone, Michael B. A., Olsnes, Sjur, Vogt, Peter K., Nagarajan, T., Rupprecht, Charles E., Dessain, Scott K., Rangarajan, P. N., Thiagarajan, D., and Srinivasan, V. A.
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Rabies, being a major zoonotic disease, significantly impacts global public health. It is invariably fatal once clinical signs are apparent. The majority of human rabies deaths occur in developing countries. India alone reports more than 50% of the global rabies deaths. Although it is a vaccine-preventable disease, effective rabies prevention in humans with category III bites requires the combined administration of rabies immunoglobulin (RIG) and vaccine. Cell culture rabies vaccines have become widely available in developing countries, virtually replacing the inferior and unsafe nerve tissue vaccines. Limitations inherent to the conventional RIG of either equine or human origin have prompted scientists to look for monoclonal antibody-based human RIG as an alternative. Fully human monoclonal antibodies have been found to be safer and equally efficacious than conventional RIG when tested in mice and hamsters. In this chapter, rabies epidemiology, reservoir control measures, post-exposure prophylaxis of human rabies, and combination therapy for rabies are discussed. Novel human monoclonal antibodies, their production, and the significance of plants as expression platforms are emphasized. [ABSTRACT FROM AUTHOR]
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- 2008
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20. Neuroleptic malignant syndrome after haloperidol therapy.
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CRUZ, FRANCISCO G., THIAGARAJAN, DORAI, HARNEY, JOHN H., Cruz, F G, Thiagarajan, D, and Harney, J H
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- 1983
21. Marrow cell uptake by megakaryocytes and naked megakaryocyte nuclei in routine bone marrow examination.
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THIAGARAJAN, DORAI, PACHECO, JAIME, HILLMAN, NOSRAT, Thiagarajan, D, Pacheco, J, and Hillman, N
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- 1985
22. Mechanism of Transovarian Transmission of Salmonella enteritidis in Laying Hens
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THIAGARAJAN, D., SAEED, A.M., and ASEM, E.K.
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- 1994
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23. Experimental Infection of Laying Hens with Salmonella enteritidis Strains that Express Different Types of Fimbriae
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THIAGARAJAN, D., THACKER, H.L., and SAEED, A.M.
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- 1996
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24. Research notes: ELISPOT assay for detection of antibody secreting cells to infectious bursal disease virus in chickens
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Wu, C.C., Thiagarajan, D, and Lin, T.L.
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- 1998
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25. Immunogenecity of a Brucella abortus S19 Glyco-conjugate Vaccine Consisting of Lipo-polysaccharide and Outer Membrane Protein in Cattle Calves.
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Mythili, T., Rajendra, L., Thiagarajan, D., and Srinivasan, V. A.
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CALVES , *CATTLE diseases , *IMMUNOGENETICS , *GENETICS , *IMMUNOLOGY , *BRUCELLA abortus , *GLYCOCONJUGATES , *VACCINES , *ENDOTOXINS , *MEMBRANE proteins - Abstract
A glyco-conjugate vaccine consisting of lipopolysaccharide (LPS) and the outer membrane protein (OMP) of Brucella abortus S19 strain was prepared. Cattle calves were inoculated with 50 μg of the glyco-conjugate vaccine. Separate group of calves was vaccinated with live, attenuated B. abortus S19 vaccine. The humoral immune response in calves was assessed by an indirect ELISA on days 21, 60, 90 and 120 postvaccination. The glyco-conjugate vaccine was able to induce strong and comparable immune response against both components like the live, attenuated S19 vaccine. The IgG1 and IgG2 subtypes were prominent in the antibody response. In addition, the glyco-conjugate vaccine was able to induce a cell mediated immune response as indicated by the expression of IFNγ in a whole blood stimulation assay using inactivated whole bacterial antigen or OMP. In these aspects the glyco-conjugate vaccine was similar to the live, attenuated S19 vaccine. Results of the study indicate that the glyco-conjugate vaccine may be a useful vaccine for inducing potent immune responses in cattle. [ABSTRACT FROM AUTHOR]
- Published
- 2010
26. Insights From Liver‐Humanized Mice on Cholesterol Lipoprotein Metabolism and LXR‐Agonist Pharmacodynamics in Humans
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Mirko E, Minniti, Matteo, Pedrelli, Lise-Lotte, Vedin, Anne-Sophie, Delbès, Raphaël G P, Denis, Katariina, Öörni, Claudia, Sala, Chiara, Pirazzini, Divya, Thiagarajan, Harri J, Nurmi, Markus, Grompe, Kevin, Mills, Paolo, Garagnani, Ewa C S, Ellis, Stephen C, Strom, Serge H, Luquet, Elizabeth M, Wilson, John, Bial, Knut R, Steffensen, Paolo, Parini, Minniti ME, Pedrelli M, Vedin LL, Delbès AS, Denis RGP, Öörni K, Sala C, Pirazzini C, Thiagarajan D, Nurmi HJ, Grompe M, Mills K, Garagnani P, Ellis ECS, Strom SC, Luquet SH, Wilson EM, Bial J, Steffensen KR, Parini P, Karolinska Institutet [Stockholm], Department of Laboratory Medicine [Karolinska Institutet], Unité de Biologie Fonctionnelle et Adaptative (BFA (UMR_8251 / U1133)), Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), Wihuri Research Institute [Helsinki, Finland], University of Bologna, University of Helsinki, and University College of London [London] (UCL)
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Male ,Mice, Knockout ,Benzylamines ,Lipoproteins ,[SDV.MHEP.HEG]Life Sciences [q-bio]/Human health and pathology/Hépatology and Gastroenterology ,Original Articles ,[SDV.MHEP.EM]Life Sciences [q-bio]/Human health and pathology/Endocrinology and metabolism ,Benzoates ,LDL ,Mice ,Cholesterol ,LDLR ,Liver ,Liver Biology/Pathobiology ,CETP ,Hepatocytes ,hepatocyte ,Animals ,Humans ,lipids (amino acids, peptides, and proteins) ,Original Article ,translatability ,APOB ,Liver X Receptors - Abstract
International audience; Background and Aims; Genetically modified mice have been used extensively to study human disease. However, the data gained are not always translatable to humans because of major species differences. Liver‐humanized mice (LHM) are considered a promising model to study human hepatic and systemic metabolism. Therefore, we aimed to further explore their lipoprotein metabolism and to characterize key hepatic species‐related, physiological differences.Approach and Results: Fah−/−, Rag2−/−, and Il2rg−/− knockout mice on the nonobese diabetic (FRGN) background were repopulated with primary human hepatocytes from different donors. Cholesterol lipoprotein profiles of LHM showed a human‐like pattern, characterized by a high ratio of low‐density lipoprotein to high‐density lipoprotein, and dependency on the human donor. This pattern was determined by a higher level of apolipoprotein B100 in circulation, as a result of lower hepatic mRNA editing and low‐density lipoprotein receptor expression, and higher levels of circulating proprotein convertase subtilisin/kexin type 9. As a consequence, LHM lipoproteins bind to human aortic proteoglycans in a pattern similar to human lipoproteins. Unexpectedly, cholesteryl ester transfer protein was not required to determine the human‐like cholesterol lipoprotein profile. Moreover, LHM treated with GW3965 mimicked the negative lipid outcomes of the first human trial of liver X receptor stimulation (i.e., a dramatic increase of cholesterol and triglycerides in circulation). Innovatively, LHM allowed the characterization of these effects at a molecular level.Conclusions: LHM represent an interesting translatable model of human hepatic and lipoprotein metabolism. Because several metabolic parameters displayed donor dependency, LHM may also be used in studies for personalized medicine.
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- 2020
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27. IgM antibodies against malondialdehyde and phosphorylcholine in different systemic rheumatic diseases
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Thiagarajan, Divya, Oparina, Nina, Lundström, Susanna, Zubarev, Roman, Sun, Jitong, PRECISESADS, Clinical Consortium, Alarcón-Riquelme, Marta, Frostegård, Johan, Kovács, László, Balog, Attila, Deák, Magdolna, Bocskai, Márta, Dulic, Sonja, Kádár, Gabriella, The PRECISESADS Clinical Consortium, [Thiagarajan,D, Oparina,N, Sun,J, Alarcon-Riquelme,M, Frostegård,J] Unit of Immunology and Chronic Disease, Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden. [Lundström,S, Zubarev,R] Division of Physiological Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. [Alarcon-Riquelme,M] GENYO, Center for Genomics and Oncological Research: Pfizer/University of Granada/Andalusian Government, Parque tecnolуgico de la salud, Granada, Spain., and PRECISESADS Clinical Consortium Members: Te research leading to these results has received support from the Innovative Medicines Initiative Joint Undertaking under grant agreement n°115565, resources of which are composed of fnancial contribution from the European Union’s Seventh Framework Programme (FP7/2007–2013) and EFPIA companies in kind contribution. Swedish Heart Lung foundation and Swedish Rheumatism Association also contributed to fnancing. Open access funding provided by Karolinska Institute.
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Male ,Proteomics ,lcsh:Medicine ,Malondialdehído ,030204 cardiovascular system & hematology ,Inmunoglobulina M ,Organisms::Eukaryota::Animals::Chordata::Vertebrates::Mammals::Primates::Haplorhini::Catarrhini::Hominidae::Humans [Medical Subject Headings] ,chemistry.chemical_compound ,0302 clinical medicine ,Mixed connective tissue disease ,Rheumatic diseases ,Malondialdehyde ,lcsh:Science ,skin and connective tissue diseases ,Chemicals and Drugs::Organic Chemicals::Aldehydes::Malondialdehyde [Medical Subject Headings] ,Persons::Persons::Age Groups::Adult::Aged [Medical Subject Headings] ,Aged, 80 and over ,Multidisciplinary ,biology ,medicine.diagnostic_test ,Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Epidemiologic Methods::Epidemiologic Study Characteristics as Topic::Epidemiologic Studies::Case-Control Studies [Medical Subject Headings] ,Undifferentiated connective tissue disease ,Fosforilcolina ,Enfermedades reumáticas ,Middle Aged ,Diseases::Musculoskeletal Diseases::Rheumatic Diseases [Medical Subject Headings] ,Female ,Antibody ,Persons::Persons::Age Groups::Adult::Young Adult [Medical Subject Headings] ,Chemicals and Drugs::Amino Acids, Peptides, and Proteins::Proteins::Blood Proteins::Serum Globulins::Immunoglobulins::Antibodies::Autoantibodies [Medical Subject Headings] ,Adult ,IgM ,Disciplines and Occupations::Natural Science Disciplines::Biological Science Disciplines::Biochemistry::Proteomics [Medical Subject Headings] ,Phosphorylcholine ,Check Tags::Male [Medical Subject Headings] ,Immunoglobulins ,Artritis reumatoide ,Article ,Flow cytometry ,03 medical and health sciences ,Young Adult ,Rheumatology ,Rheumatic Diseases ,medicine ,Humans ,Chemicals and Drugs::Amino Acids, Peptides, and Proteins::Proteins::Blood Proteins::Serum Globulins::Immunoglobulins::Antibodies::Immunoglobulin Isotypes::Immunoglobulin M [Medical Subject Headings] ,Rheumatoid arthritis ,Persons::Persons::Age Groups::Adult [Medical Subject Headings] ,Aged ,Autoantibodies ,030203 arthritis & rheumatology ,business.industry ,lcsh:R ,Autoantibody ,Case-control study ,Persons::Persons::Age Groups::Adult::Middle Aged [Medical Subject Headings] ,medicine.disease ,Proteómica ,chemistry ,Check Tags::Female [Medical Subject Headings] ,Immunoglobulin M ,Persons::Persons::Age Groups::Adult::Aged::Aged, 80 and over [Medical Subject Headings] ,Chemicals and Drugs::Organic Chemicals::Amines::Quaternary Ammonium Compounds::Trimethyl Ammonium Compounds::Choline::Phosphorylcholine [Medical Subject Headings] ,Case-Control Studies ,Immunology ,biology.protein ,lcsh:Q ,business ,Immunoglobulines - Abstract
IgM antibodies against phosphorylcholine (anti-PC) and malondialdehyde (anti-MDA) may have protective properties in cardiovascular and rheumatic diseases. We here compare these antibodies in systemic rheumatic conditions and study their properties. Anti-PC and anti-MDA was measured using ELISA in patients with SLE (374), RA (354), Mixed connective tissue disease (MCTD, 77), Systemic sclerosis (SSc, 331), Sjögren’s syndrome (SjS, 324), primary antiphospholipid syndrome (PAPs, 65), undifferentiated connective tissue disease (UCTD, 118) and 515 matched healthy controls (HC). Cardiovascular score (CV) was broadly defined based on clinical disease symptoms. Anti-PC and anti-MDA peptide/protein characterization were compared using a proteomics de novo sequencing approach. anti-MDA and anti-PC were extracted from total IgM. The proportion of Treg cells was determined by flow cytometry. The maximal difference between cases and controls was shown for MCTD: significantly lower IgM Anti-PC but not anti-MDA among patients (median 49.3RU/ml vs 70.4 in healthy controls, p(t-test) = 0.0037). IgM low levels were more prevalent in MCTD, SLE, SjS, SSc and UCTD. IgM anti-PC variable region profiles were different from and more homologous than anti-MDA. Anti-PC but not anti-MDA were significantly negatively correlated with CV in the whole patient group. In contrast to IgM anti-PC, anti-MDA did not promote polarization of Tregs. Taken together, Anti-PC is decreased in MCTD and also in SLE, SjS and SSc but not in other studied diseases. Anti-PC may thus differentiate between these. In contrast, anti-MDA did not show these differences between diseases studied. Anti-PC level is negatively correlated with CV in the patient group cohort. In contrast to anti-PC, anti-MDA did not promote Treg polarization. These findings could have both diagnostic and therapeutic implications, one possibility being active or passive immunization with PC in some rheumatic conditions.
- Published
- 2020
28. Using adjusted local assortativity with Molecular Pixelation unveils colocalization of membrane proteins with immunological significance.
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Rhomberg-Kauert J, Karlsson M, Thiagarajan D, Kallas T, Karlsson F, Fredriksson S, Dahlberg J, and Martinez Barrio A
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- Humans, B-Lymphocytes immunology, B-Lymphocytes metabolism, Proteomics methods, Algorithms, Rituximab pharmacology, T-Lymphocytes immunology, T-Lymphocytes metabolism, Single-Cell Analysis methods, Membrane Proteins metabolism
- Abstract
Advances in spatial proteomics and protein colocalization are a driving force in the understanding of cellular mechanisms and their influence on biological processes. New methods in the field of spatial proteomics call for the development of algorithms and open up new avenues of research. The newly introduced Molecular Pixelation (MPX) provides spatial information on surface proteins and their relationship with each other in single cells. This allows for in silico representation of neighborhoods of membrane proteins as graphs. In order to analyze this new data modality, we adapted local assortativity in networks of MPX single-cell graphs and created a method that is able to capture detailed information on the spatial relationships of proteins. The introduced method can evaluate the pairwise colocalization of proteins and access higher-order similarity to investigate the colocalization of multiple proteins at the same time. We evaluated the method using publicly available MPX datasets where T cells were treated with a chemokine to study uropod formation. We demonstrate that adjusted local assortativity detects the effects of the stimuli at both single- and multiple-marker levels, which enhances our understanding of the uropod formation. We also applied our method to treating cancerous B-cell lines using a therapeutic antibody. With the adjusted local assortativity, we recapitulated the effect of rituximab on the polarity of CD20. Our computational method together with MPX improves our understanding of not only the formation of cell polarity and protein colocalization under stimuli but also advancing the overall insight into immune reaction and reorganization of cell surface proteins, which in turn allows the design of novel therapies. We foresee its applicability to other types of biological spatial data when represented as undirected graphs., Competing Interests: All authors are current or past employees of Pixelgen Technologies AB commercializing products based on Molecular Pixelation., (Copyright © 2024 Rhomberg-Kauert, Karlsson, Thiagarajan, Kallas, Karlsson, Fredriksson, Dahlberg and Martinez Barrio.)
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- 2024
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29. Molecular pixelation: spatial proteomics of single cells by sequencing.
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Karlsson F, Kallas T, Thiagarajan D, Karlsson M, Schweitzer M, Navarro JF, Leijonancker L, Geny S, Pettersson E, Rhomberg-Kauert J, Larsson L, van Ooijen H, Petkov S, González-Granillo M, Bunz J, Dahlberg J, Simonetti M, Sathe P, Brodin P, Barrio AM, and Fredriksson S
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- Humans, T-Lymphocytes metabolism, Sequence Analysis, DNA methods, Proteomics methods, Single-Cell Analysis methods
- Abstract
The spatial distribution of cell surface proteins governs vital processes of the immune system such as intercellular communication and mobility. However, fluorescence microscopy has limited scalability in the multiplexing and throughput needed to drive spatial proteomics discoveries at subcellular level. We present Molecular Pixelation (MPX), an optics-free, DNA sequence-based method for spatial proteomics of single cells using antibody-oligonucleotide conjugates (AOCs) and DNA-based, nanometer-sized molecular pixels. The relative locations of AOCs are inferred by sequentially associating them into local neighborhoods using the sequence-unique DNA pixels, forming >1,000 spatially connected zones per cell in 3D. For each single cell, DNA-sequencing reads are computationally arranged into spatial proteomics networks for 76 proteins. By studying immune cell dynamics using spatial statistics on graph representations of the data, we identify known and new patterns of spatial organization of proteins on chemokine-stimulated T cells, highlighting the potential of MPX in defining cell states by the spatial arrangement of proteins., (© 2024. The Author(s).)
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- 2024
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30. DIAPH1-MFN2 interaction regulates mitochondria-SR/ER contact and modulates ischemic/hypoxic stress.
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Yepuri G, Ramirez LM, Theophall GG, Reverdatto SV, Quadri N, Hasan SN, Bu L, Thiagarajan D, Wilson R, Díez RL, Gugger PF, Mangar K, Narula N, Katz SD, Zhou B, Li H, Stotland AB, Gottlieb RA, Schmidt AM, Shekhtman A, and Ramasamy R
- Subjects
- Humans, Male, Endoplasmic Reticulum metabolism, Formins metabolism, GTP Phosphohydrolases genetics, GTP Phosphohydrolases metabolism, Ischemia genetics, Ischemia metabolism, Mitochondrial Proteins metabolism, Signal Transduction, Animals, Endothelial Cells metabolism, Mitochondria metabolism
- Abstract
Inter-organelle contact and communication between mitochondria and sarco/endoplasmic reticulum (SR/ER) maintain cellular homeostasis and are profoundly disturbed during tissue ischemia. We tested the hypothesis that the formin Diaphanous-1 (DIAPH1), which regulates actin dynamics, signal transduction and metabolic functions, contributes to these processes. We demonstrate that DIAPH1 interacts directly with Mitofusin-2 (MFN2) to shorten mitochondria-SR/ER distance, thereby enhancing mitochondria-ER contact in cells including cardiomyocytes, endothelial cells and macrophages. Solution structure studies affirm the interaction between the Diaphanous Inhibitory Domain and the cytosolic GTPase domain of MFN2. In male rodent and human cardiomyocytes, DIAPH1-MFN2 interaction regulates mitochondrial turnover, mitophagy, and oxidative stress. Introduction of synthetic linker construct, which shorten the mitochondria-SR/ER distance, mitigated the molecular and functional benefits of DIAPH1 silencing in ischemia. This work establishes fundamental roles for DIAPH1-MFN2 interaction in the regulation of mitochondria-SR/ER contact networks. We propose that targeting pathways that regulate DIAPH1-MFN2 interactions may facilitate recovery from tissue ischemia., (© 2023. The Author(s).)
- Published
- 2023
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31. Clinical Validation of Artificial Intelligence-Augmented Pathology Diagnosis Demonstrates Significant Gains in Diagnostic Accuracy in Prostate Cancer Detection.
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Raciti P, Sue J, Retamero JA, Ceballos R, Godrich R, Kunz JD, Casson A, Thiagarajan D, Ebrahimzadeh Z, Viret J, Lee D, Schüffler PJ, DeMuth G, Gulturk E, Kanan C, Rothrock B, Reis-Filho J, Klimstra DS, Reuter V, and Fuchs TJ
- Subjects
- Male, Humans, Prostate pathology, Image Interpretation, Computer-Assisted methods, Biopsy, Needle, Artificial Intelligence, Prostatic Neoplasms diagnosis, Prostatic Neoplasms pathology
- Abstract
Context.—: Prostate cancer diagnosis rests on accurate assessment of tissue by a pathologist. The application of artificial intelligence (AI) to digitized whole slide images (WSIs) can aid pathologists in cancer diagnosis, but robust, diverse evidence in a simulated clinical setting is lacking., Objective.—: To compare the diagnostic accuracy of pathologists reading WSIs of prostatic biopsy specimens with and without AI assistance., Design.—: Eighteen pathologists, 2 of whom were genitourinary subspecialists, evaluated 610 prostate needle core biopsy WSIs prepared at 218 institutions, with the option for deferral. Two evaluations were performed sequentially for each WSI: initially without assistance, and immediately thereafter aided by Paige Prostate (PaPr), a deep learning-based system that provides a WSI-level binary classification of suspicious for cancer or benign and pinpoints the location that has the greatest probability of harboring cancer on suspicious WSIs. Pathologists' changes in sensitivity and specificity between the assisted and unassisted modalities were assessed, together with the impact of PaPr output on the assisted reads., Results.—: Using PaPr, pathologists improved their sensitivity and specificity across all histologic grades and tumor sizes. Accuracy gains on both benign and cancerous WSIs could be attributed to PaPr, which correctly classified 100% of the WSIs showing corrected diagnoses in the PaPr-assisted phase., Conclusions.—: This study demonstrates the effectiveness and safety of an AI tool for pathologists in simulated diagnostic practice, bridging the gap between computational pathology research and its clinical application, and resulted in the first US Food and Drug Administration authorization of an AI system in pathology., (© 2023 College of American Pathologists.)
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- 2023
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32. Clinical Study on Corneal Topographical Changes in Vernal Keratoconjunctivitis by Using OCULUS Pentacam®.
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Thiagarajan D, Zainal S, Alias R, and Bastion MC
- Abstract
Purpose: To evaluate the corneal topographical changes in vernal keratoconjunctivitis (VKC) subjects using OCULUS Pentacam., Design: This was a cross-sectional study., Methods: VKC patients and normal subjects who fulfilled the inclusion and exclusion criteria were recruited by convenience sampling into the study. Subjects underwent a best-corrected visual acuity measurement with a Snellen chart, retinoscopy, and corneal topography (OCULUS Pentacam®), followed by anterior segment and fundus examination and intraocular pressure measurement. Data were collected and analyzed using SPSS version 26.0 for Windows (SPSS Inc. Chicago, IL, USA). A p-value <0.05 was considered statistically significant., Results: A total of 78 eyes of 43 VKC patients and 84 eyes of normal subjects were included in the study. Most of the VKC subjects were Malay males aged 10 years or less. A majority (71.8%) had palpebral VKC of five years duration or less (57.7%) and presented between the ages of six and 10 years (44.9%). Central corneal curvature and astigmatism were significantly higher in VKC subjects compared to the normal population (p < 0.05). The minimal pachymetry was significantly lower with a longer duration of VKC (p < 0.05). Older age of presentation of VKC was associated with higher central corneal curvatures and thinner minimal pachymetry (p < 0.05). There was no association between the type of VKC and corneal topography changes. The prevalence of keratoconus and subclinical keratoconus among VKC subjects was 10.3% and 11.5%, respectively., Conclusion: Longer duration and older age of presentation of VKC are associated with significant corneal topographical changes, thus exposing them to a higher risk of the future development of keratoconus., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2023, Thiagarajan et al.)
- Published
- 2023
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33. Aversive Bimodal Associations Differently Impact Visual and Olfactory Memory Performance in Drosophila .
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Thiagarajan D, Eberl F, Veit D, Hansson BS, Knaden M, and Sachse S
- Abstract
Animals form sensory associations and store them as memories to guide behavioral decisions. Although unimodal learning has been studied extensively in insects, it is important to explore sensory cues in combination because most behaviors require multimodal inputs. In our study, we optimized the T-maze to employ both visual and olfactory cues in a classical aversive learning paradigm in Drosophila melanogaster . In contrast to unimodal training, bimodal training evoked a significant short-term visual memory after a single training trial. Interestingly, the same protocol did not enhance short-term olfactory memory and even had a negative impact. However, compromised long-lasting olfactory memory significantly improved after bimodal training. Our study demonstrates that the effect of bimodal integration on learning is not always beneficial and is conditional upon the formed memory strengths. We postulate that flies utilize information on a need-to basis: bimodal training augments weakly formed memories while stronger associations are impacted differently., Competing Interests: The authors declare no competing interests., (© 2022 The Author(s).)
- Published
- 2022
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34. Aldose reductase promotes diet-induced obesity via induction of senescence in subcutaneous adipose tissue.
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Thiagarajan D, Quadri N, Jawahar S, Zirpoli H, Del Pozo CH, López-Díez R, Hasan SN, Yepuri G, Gugger PF, Finlin BS, Kern PA, Gabbay K, Schmidt AM, and Ramasamy R
- Subjects
- Adipocytes metabolism, Adipose Tissue metabolism, Aldo-Keto Reductases, Animals, Diet, High-Fat adverse effects, Mice, Mice, Inbred C57BL, Obesity metabolism, Aldehyde Reductase genetics, Aldehyde Reductase metabolism, Subcutaneous Fat metabolism
- Abstract
Objective: Aldose reductase (AKR1B1 in humans; Akr1b3 in mice), a key enzyme of the polyol pathway, mediates lipid accumulation in the murine heart and liver. The study objective was to explore potential roles for AKR1B1/Akr1b3 in the pathogenesis of obesity and its complications., Methods: The study employed mice treated with an inhibitor of aldose reductase or mice devoid of Akr1b3 were used to determine their response to a high-fat diet. The study used subcutaneous adipose tissue-derived adipocytes to investigate mechanisms by which AKR1B1/Akr1b3 promotes diet-induced obesity., Results: Increased expression of aldose reductase and senescence in the adipose tissue of humans and mice with obesity were demonstrated. Genetic deletion of Akr1b3 or pharmacological blockade of AKRIB3 with zopolrestat reduced high-fat-diet-induced obesity, attenuated markers of adipose tissue senescence, and increased lipolysis., Conclusions: AKR1B1/Akr1b3 modulation of senescence in subcutaneous adipose tissue contributes to aberrant metabolic responses to high-fat feeding. These data unveil new opportunities to target these pathways to combat obesity., (© 2022 The Obesity Society.)
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- 2022
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35. Risperidone Reduces Matrix Metalloproteinase-9 and Increases Neurotrophin-3 in Schizophrenia Spectrum of Disorder.
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Chenniappan R, Nandeesha H, Kattimani S, Goud AC, and Thiagarajan D
- Abstract
Even though earlier studies have reported alteration in the markers of synaptic plasticity (Matrix metalloproteinase-9 [MMP-9] and Neurotrophin-3 [NT-3]), there are no reports about the effect of risperidone on the same. The present study was designed to assess the effect of risperidone on NT-3 and MMP-9 levels in patients with schizophrenia spectrum of disorder and to investigate whether these markers can be used to predict the treatment response in these patients. 62 schizophrenia spectrum of disorder patients were enrolled in the study and were treated with 4 mg of risperidone OD. Serum NT-3 and MMP-9 levels were compared at baseline and after 6 weeks following risperidone treatment. Severity of the disease was assessed using Positive and Negative Syndrome Scale (PANSS). MMP-9 was significantly reduced and NT-3 was significantly increased in schizophrenia spectrum of disorder after treatment with risperidone. We also found a significant reduction in MMP-9 levels in the non-responders group. At a cut off of 1225 ng/mL, MMP-9 can predict response to treatment with 64% sensitivity and 62% specificity and at a cut off of 957 pg/mL, NT-3 predicted the response to treatment with 60% sensitivity and 62% specificity. We conclude that risperidone decreases the serum levels of MMP-9 and increases the NT-3 levels in schizophrenia spectrum of disorder. MMP-9 and NT-3 can predict the response to treatment with risperidone., Competing Interests: Conflicts of interestThe authors declare that they have no conflicts of interest., (© Association of Clinical Biochemists of India 2021.)
- Published
- 2022
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36. Multimodal Information Processing and Associative Learning in the Insect Brain.
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Thiagarajan D and Sachse S
- Abstract
The study of sensory systems in insects has a long-spanning history of almost an entire century. Olfaction, vision, and gustation are thoroughly researched in several robust insect models and new discoveries are made every day on the more elusive thermo- and mechano-sensory systems. Few specialized senses such as hygro- and magneto-reception are also identified in some insects. In light of recent advancements in the scientific investigation of insect behavior, it is not only important to study sensory modalities individually, but also as a combination of multimodal inputs. This is of particular significance, as a combinatorial approach to study sensory behaviors mimics the real-time environment of an insect with a wide spectrum of information available to it. As a fascinating field that is recently gaining new insight, multimodal integration in insects serves as a fundamental basis to understand complex insect behaviors including, but not limited to navigation, foraging, learning, and memory. In this review, we have summarized various studies that investigated sensory integration across modalities, with emphasis on three insect models (honeybees, ants and flies), their behaviors, and the corresponding neuronal underpinnings.
- Published
- 2022
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37. Tuberculous pleural effusion in a patient with sympathetic ophthalmia on immunosuppression: a case report.
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Thiagarajan D, Teh DAL, Ahmad Tarmidzi NA, Ishak H, Abu Bakar Z, and Bastion MC
- Abstract
Background: Tuberculous pleural effusion (TPE) is paucibacillary, making its diagnosis difficult based on laboratory investigations alone. We present a case of a patient with a TPE who was initially misdiagnosed to have azathioprine-induced lung injury. The diagnosis of TPE was arrived at with the help of clinical assessment, laboratory and radiological investigations., Case Presentation: A 25-year-old chronic smoker with sympathetic ophthalmia on long-term immunosuppression, latent tuberculosis infection and a significant family history of tuberculosis presented with a three-week history of productive cough, low-grade fever, night sweats and weight loss. Examination of the lungs showed reduced breath sounds at the right lower zone. Chest x-ray showed minimal right pleural effusion with a small area of right upper lobe consolidation. The pleural fluid was exudative with predominant mononuclear leukocytes. Direct smears of sputum and pleural fluid; polymerase chain reaction of pleural fluid; and sputum, pleural fluid and blood cultures were negative for M. tuberculosis (MTB) and other organisms. As he did not respond to a course of broad-spectrum antibiotics, he was then treated as a case of azathioprine-induced lung injury. However, his condition did not improve despite the cessation of azathioprine. A contrast-enhanced computed tomography of the thorax showed right upper lobe consolidation with tree-in-bud changes, bilateral lung atelectasis, subpleural nodule, mild right pleural effusion and mediastinal lymphadenopathy. Bronchoalveolar lavage was negative for malignant cells and microorganisms including, MTB. However, no pleural biopsy was done. He was empirically treated with anti-tubercular therapy for 9 months duration and showed complete recovery., Conclusion: A high index of suspicion for TPE is required in individuals with immunosuppression living in regions endemic to tuberculosis. Targeted investigations and sound clinical judgement allow early diagnosis and prompt treatment initiation to prevent morbidity and mortality., (© 2021. The Author(s).)
- Published
- 2021
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38. Inducible Depletion of Calpain-2 Mitigates Abdominal Aortic Aneurysm in Mice.
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Muniappan L, Okuyama M, Javidan A, Thiagarajan D, Jiang W, Moorleghen JJ, Yang L, Balakrishnan A, Howatt DA, Uchida HA, Saido TC, and Subramanian V
- Subjects
- Aged, Aged, 80 and over, Angiotensin II, Animals, Aorta, Abdominal pathology, Aortic Aneurysm, Abdominal chemically induced, Aortic Aneurysm, Abdominal enzymology, Aortic Aneurysm, Abdominal genetics, Aortic Rupture chemically induced, Aortic Rupture enzymology, Aortic Rupture genetics, Calpain genetics, Calpain metabolism, Cells, Cultured, Cytoskeleton enzymology, Cytoskeleton pathology, Dilatation, Pathologic, Disease Models, Animal, Extracellular Matrix enzymology, Extracellular Matrix pathology, Female, Humans, Male, Mice, Inbred C57BL, Mice, Knockout, Middle Aged, Rats, Receptors, LDL deficiency, Receptors, LDL genetics, Mice, Aorta, Abdominal enzymology, Aortic Aneurysm, Abdominal prevention & control, Aortic Rupture prevention & control, Calpain deficiency, Vascular Remodeling
- Abstract
[Figure: see text].
- Published
- 2021
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39. Antagonistic roles for Ataxin-2 structured and disordered domains in RNP condensation.
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Singh A, Hulsmeier J, Kandi AR, Pothapragada SS, Hillebrand J, Petrauskas A, Agrawal K, Rt K, Thiagarajan D, Jayaprakashappa D, VijayRaghavan K, Ramaswami M, and Bakthavachalu B
- Subjects
- Animals, Ataxin-2 metabolism, Drosophila Proteins metabolism, Drosophila melanogaster metabolism, RNA-Binding Proteins genetics, RNA-Binding Proteins metabolism, Ataxin-2 genetics, Drosophila Proteins genetics, Drosophila melanogaster genetics, RNA, Messenger metabolism
- Abstract
Ataxin-2 (Atx2) is a translational control molecule mutated in spinocerebellar ataxia type II and amyotrophic lateral sclerosis. While intrinsically disordered domains (IDRs) of Atx2 facilitate mRNP condensation into granules, how IDRs work with structured domains to enable positive and negative regulation of target mRNAs remains unclear. Using the Targets of RNA-Binding Proteins Identified by Editing technology, we identified an extensive data set of Atx2-target mRNAs in the Drosophila brain and S2 cells. Atx2 interactions with AU-rich elements in 3'UTRs appear to modulate stability/turnover of a large fraction of these target mRNAs. Further genomic and cell biological analyses of Atx2 domain deletions demonstrate that Atx2 (1) interacts closely with target mRNAs within mRNP granules, (2) contains distinct protein domains that drive or oppose RNP-granule assembly, and (3) has additional essential roles outside of mRNP granules. These findings increase the understanding of neuronal translational control mechanisms and inform strategies for Atx2-based interventions under development for neurodegenerative disease., Competing Interests: AS, JH, AK, SP, JH, AP, KA, KR, DT, DJ, BB No competing interests declared, KV Senior editor, eLife, MR Reviewing editor, eLife, (© 2021, Singh et al.)
- Published
- 2021
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40. Correction: Antibodies against Phosphorylcholine and Malondialdehyde during the First Two Years of Life.
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Thiagarajan D, Lundström SL, Pershagen G, Almqvist C, Andolf E, Hedman A, Berg O, Oparina N, and Frostegård J
- Published
- 2021
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41. Antibodies against Phosphorylcholine and Malondialdehyde during the First Two Years of Life.
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Thiagarajan D, Lundström SL, Pershagen G, Almqvist C, Andolf E, Hedman A, Berg O, Oparina N, and Frostegård J
- Subjects
- Adolescent, Adult, Antibodies, Antiphospholipid immunology, Child, Preschool, Female, Humans, Immunoglobulin G immunology, Immunoglobulin M immunology, Infant, Infant, Newborn, Male, Malondialdehyde immunology, Middle Aged, Phosphorylcholine immunology, Prospective Studies, Antibodies, Antiphospholipid blood, Immunoglobulin G blood, Immunoglobulin M blood, Malondialdehyde blood, Phosphorylcholine blood
- Abstract
Abs against phosphorylcholine (anti-PC) and Abs against malondialdehyde (anti-MDA) may be protective in chronic inflammation, like atherosclerosis and cardiovascular disease. It is not known how they develop early in life. Ab titers were measured using ELISA in healthy women ( n = 105; born into life study) and their children. Plasma samples were collected from the mothers before conception and from the children at birth as well as at 1 and 2 y after birth. Extracted Abs were compared using a proteomics de novo sequencing approach. It was observed that children were born with very low levels of IgM anti-PC, whereas IgM anti-MDA was present at birth. Both IgM anti-PC and anti-MDA increased during the first 2 y of life, but IgM anti-PC in contrast to IgM anti-MDA was still significantly lower than in the mothers. IgG anti-PC decreased after 1 y but reached similar levels as mothers' after 2 y, whereas IgG anti-MDA reached similar levels as mothers' already after 1 y. Proteomics peptide sequencing analysis indicated large peptide sequence variation without specific clone expression during the early stage of life compared with the adult stage for which specific peptide sequences dominated. IgM anti-PC levels develop much slower than anti-MDA and are still relatively low at 2 y. We hypothesize that anti-PC is developed by a combination of preprogramming and exposure to the external world, in which infectious agents may play a role. For anti-MDA, preprogramming is likely to play a major role and at an earlier stage than for anti-PC., (Copyright © 2020 by The American Association of Immunologists, Inc.)
- Published
- 2020
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42. Insights From Liver-Humanized Mice on Cholesterol Lipoprotein Metabolism and LXR-Agonist Pharmacodynamics in Humans.
- Author
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Minniti ME, Pedrelli M, Vedin LL, Delbès AS, Denis RGP, Öörni K, Sala C, Pirazzini C, Thiagarajan D, Nurmi HJ, Grompe M, Mills K, Garagnani P, Ellis ECS, Strom SC, Luquet SH, Wilson EM, Bial J, Steffensen KR, and Parini P
- Subjects
- Animals, Hepatocytes transplantation, Humans, Liver surgery, Male, Mice, Mice, Knockout, Benzoates pharmacokinetics, Benzylamines pharmacokinetics, Cholesterol metabolism, Hepatocytes metabolism, Lipoproteins metabolism, Liver metabolism, Liver X Receptors agonists
- Abstract
Background and Aims: Genetically modified mice have been used extensively to study human disease. However, the data gained are not always translatable to humans because of major species differences. Liver-humanized mice (LHM) are considered a promising model to study human hepatic and systemic metabolism. Therefore, we aimed to further explore their lipoprotein metabolism and to characterize key hepatic species-related, physiological differences., Approach and Results: Fah
-/- , Rag2-/- , and Il2rg-/- knockout mice on the nonobese diabetic (FRGN) background were repopulated with primary human hepatocytes from different donors. Cholesterol lipoprotein profiles of LHM showed a human-like pattern, characterized by a high ratio of low-density lipoprotein to high-density lipoprotein, and dependency on the human donor. This pattern was determined by a higher level of apolipoprotein B100 in circulation, as a result of lower hepatic mRNA editing and low-density lipoprotein receptor expression, and higher levels of circulating proprotein convertase subtilisin/kexin type 9. As a consequence, LHM lipoproteins bind to human aortic proteoglycans in a pattern similar to human lipoproteins. Unexpectedly, cholesteryl ester transfer protein was not required to determine the human-like cholesterol lipoprotein profile. Moreover, LHM treated with GW3965 mimicked the negative lipid outcomes of the first human trial of liver X receptor stimulation (i.e., a dramatic increase of cholesterol and triglycerides in circulation). Innovatively, LHM allowed the characterization of these effects at a molecular level., Conclusions: LHM represent an interesting translatable model of human hepatic and lipoprotein metabolism. Because several metabolic parameters displayed donor dependency, LHM may also be used in studies for personalized medicine., (© 2019 The Authors. Hepatology published by Wiley Periodicals, Inc., on behalf of American Association for the Study of Liver Diseases.)- Published
- 2020
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43. IgM antibodies against malondialdehyde and phosphorylcholine in different systemic rheumatic diseases.
- Author
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Thiagarajan D, Oparina N, Lundström S, Zubarev R, Sun J, Alarcon-Riquelme M, and Frostegård J
- Subjects
- Adult, Aged, Aged, 80 and over, Autoantibodies, Case-Control Studies, Female, Humans, Male, Middle Aged, Young Adult, Immunoglobulin M metabolism, Malondialdehyde immunology, Phosphorylcholine immunology, Proteomics methods, Rheumatic Diseases immunology
- Abstract
IgM antibodies against phosphorylcholine (anti-PC) and malondialdehyde (anti-MDA) may have protective properties in cardiovascular and rheumatic diseases. We here compare these antibodies in systemic rheumatic conditions and study their properties. Anti-PC and anti-MDA was measured using ELISA in patients with SLE (374), RA (354), Mixed connective tissue disease (MCTD, 77), Systemic sclerosis (SSc, 331), Sjögren's syndrome (SjS, 324), primary antiphospholipid syndrome (PAPs, 65), undifferentiated connective tissue disease (UCTD, 118) and 515 matched healthy controls (HC). Cardiovascular score (CV) was broadly defined based on clinical disease symptoms. Anti-PC and anti-MDA peptide/protein characterization were compared using a proteomics de novo sequencing approach. anti-MDA and anti-PC were extracted from total IgM. The proportion of Treg cells was determined by flow cytometry. The maximal difference between cases and controls was shown for MCTD: significantly lower IgM Anti-PC but not anti-MDA among patients (median 49.3RU/ml vs 70.4 in healthy controls, p(t-test) = 0.0037). IgM low levels were more prevalent in MCTD, SLE, SjS, SSc and UCTD. IgM anti-PC variable region profiles were different from and more homologous than anti-MDA. Anti-PC but not anti-MDA were significantly negatively correlated with CV in the whole patient group. In contrast to IgM anti-PC, anti-MDA did not promote polarization of Tregs. Taken together, Anti-PC is decreased in MCTD and also in SLE, SjS and SSc but not in other studied diseases. Anti-PC may thus differentiate between these. In contrast, anti-MDA did not show these differences between diseases studied. Anti-PC level is negatively correlated with CV in the patient group cohort. In contrast to anti-PC, anti-MDA did not promote Treg polarization. These findings could have both diagnostic and therapeutic implications, one possibility being active or passive immunization with PC in some rheumatic conditions.
- Published
- 2020
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44. miR-146a Deficiency Accelerates Hepatic Inflammation Without Influencing Diet-induced Obesity in Mice.
- Author
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Javidan A, Jiang W, Okuyama M, Thiagarajan D, Yang L, Moorleghen JJ, Muniappan L, and Subramanian V
- Subjects
- Adipocytes pathology, Adipose Tissue pathology, Adiposity, Animals, Cell Death, Female, Glucose Tolerance Test, Inflammation pathology, Insulin metabolism, Liver Cirrhosis genetics, Liver Cirrhosis pathology, Macrophages pathology, Male, Mice, Inbred C57BL, MicroRNAs genetics, Weight Gain, Diet, High-Fat, Inflammation genetics, Liver pathology, MicroRNAs metabolism, Obesity genetics
- Abstract
miR-146a, an anti-inflammatory microRNA, is shown to be a negative regulator of adipocyte inflammation. However, the functional contribution of miR-146a in the development of obesity is not defined. In order to determine whether miR-146a influences diet-induced obesity, mice that were either wild type (WT) or miR-146a deficient (KO) were fed with high (60% kcal) fat diet (HFD) for 16 weeks. Deficiency of miR-146a did not influence obesity measured as HFD-induced body weight and fat mass gain, or metabolism of glucose and insulin tolerance. In addition, adipocyte apoptosis, adipose tissue collagen and macrophage accumulation as detected by TUNEL, Picro Sirius and F4/80 immunostaining, respectively, were comparable between the two groups of mice. Although, miR-146a deficiency had no influence on HFD-induced hepatic lipid accumulation, interestingly, it significantly increased obesity-induced inflammatory responses in liver tissue. The present study demonstrates that miR-146a deficiency had no influence on the development of HFD-induced obesity and adipose tissue remodeling, whereas it significantly increased hepatic inflammation in obese mice. This result suggests that miR-146a regulates hepatic inflammation during development of obesity.
- Published
- 2019
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45. RNP-Granule Assembly via Ataxin-2 Disordered Domains Is Required for Long-Term Memory and Neurodegeneration.
- Author
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Bakthavachalu B, Huelsmeier J, Sudhakaran IP, Hillebrand J, Singh A, Petrauskas A, Thiagarajan D, Sankaranarayanan M, Mizoue L, Anderson EN, Pandey UB, Ross E, VijayRaghavan K, Parker R, and Ramaswami M
- Subjects
- Animals, Amyotrophic Lateral Sclerosis genetics, C9orf72 Protein, Drosophila, Fertility, Heterogeneous-Nuclear Ribonucleoprotein Group F-H, Smell, Spinocerebellar Ataxias genetics, Survival, Disease Models, Animal, Ataxin-2 genetics, Ataxin-2 metabolism, Cytoplasmic Granules metabolism, Drosophila Proteins genetics, Drosophila Proteins metabolism, Intrinsically Disordered Proteins genetics, Intrinsically Disordered Proteins metabolism, Memory, Long-Term, Neurodegenerative Diseases genetics, Ribonucleoproteins metabolism
- Abstract
Human Ataxin-2 is implicated in the cause and progression of amyotrophic lateral sclerosis (ALS) and type 2 spinocerebellar ataxia (SCA-2). In Drosophila, a conserved atx2 gene is essential for animal survival as well as for normal RNP-granule assembly, translational control, and long-term habituation. Like its human homolog, Drosophila Ataxin-2 (Atx2) contains polyQ repeats and additional intrinsically disordered regions (IDRs). We demonstrate that Atx2 IDRs, which are capable of mediating liquid-liquid phase transitions in vitro, are essential for efficient formation of neuronal mRNP assemblies in vivo. Remarkably, ΔIDR mutants that lack neuronal RNP granules show normal animal development, survival, and fertility. However, they show defects in long-term memory formation/consolidation as well as in C9ORF72 dipeptide repeat or FUS-induced neurodegeneration. Together, our findings demonstrate (1) that higher-order mRNP assemblies contribute to long-term neuronal plasticity and memory, and (2) that a targeted reduction in RNP-granule formation efficiency can alleviate specific forms of neurodegeneration., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2018
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46. Author Correction: Suppression of Transposable Elements in Leukemic Stem Cells.
- Author
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Colombo AR, Zubair A, Thiagarajan D, Nuzhdin S, Triche TJ, and Ramsingh G
- Abstract
A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper.
- Published
- 2018
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47. GABAergic inhibition of leg motoneurons is required for normal walking behavior in freely moving Drosophila .
- Author
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Gowda SBM, Paranjpe PD, Reddy OV, Thiagarajan D, Palliyil S, Reichert H, and VijayRaghavan K
- Subjects
- Algorithms, Animals, Animals, Genetically Modified, Electromyography, Electronic Data Processing, Extremities physiology, Feedback, Sensory, Immunohistochemistry, Interneurons physiology, Introns, Male, Microscopy, Confocal, Neurotransmitter Agents physiology, Periodicity, Phenotype, RNA Interference, Signal Processing, Computer-Assisted, Video Recording, Drosophila physiology, Locomotion physiology, Motor Neurons physiology, Walking physiology
- Abstract
Walking is a complex rhythmic locomotor behavior generated by sequential and periodical contraction of muscles essential for coordinated control of movements of legs and leg joints. Studies of walking in vertebrates and invertebrates have revealed that premotor neural circuitry generates a basic rhythmic pattern that is sculpted by sensory feedback and ultimately controls the amplitude and phase of the motor output to leg muscles. However, the identity and functional roles of the premotor interneurons that directly control leg motoneuron activity are poorly understood. Here we take advantage of the powerful genetic methodology available in Drosophila to investigate the role of premotor inhibition in walking by genetically suppressing inhibitory input to leg motoneurons. For this, we have developed an algorithm for automated analysis of leg motion to characterize the walking parameters of wild-type flies from high-speed video recordings. Further, we use genetic reagents for targeted RNAi knockdown of inhibitory neurotransmitter receptors in leg motoneurons together with quantitative analysis of resulting changes in leg movement parameters in freely walking Drosophila Our findings indicate that targeted down-regulation of the GABA
A receptor Rdl (Resistance to Dieldrin) in leg motoneurons results in a dramatic reduction of walking speed and step length without the loss of general leg coordination during locomotion. Genetically restricting the knockdown to the adult stage and subsets of motoneurons yields qualitatively identical results. Taken together, these findings identify GABAergic premotor inhibition of motoneurons as an important determinant of correctly coordinated leg movements and speed of walking in freely behaving Drosophila ., Competing Interests: The authors declare no conflict of interest., (Copyright © 2018 the Author(s). Published by PNAS.)- Published
- 2018
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48. SM22α suppresses cytokine-induced inflammation and the transcription of NF-κB inducing kinase (Nik) by modulating SRF transcriptional activity in vascular smooth muscle cells.
- Author
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Dai X, Thiagarajan D, Fang J, Shen J, Annam NP, Yang Z, Jiang H, Ju D, Xie Y, Zhang K, Tseng YY, Yang Z, Rishi AK, Li HJ, Yang M, and Li L
- Subjects
- Animals, Cell Line, Mice, Microfilament Proteins genetics, Muscle Proteins genetics, Muscle, Smooth, Vascular cytology, Protein Serine-Threonine Kinases genetics, NF-kappaB-Inducing Kinase, Cytokines physiology, Inflammation physiopathology, Microfilament Proteins physiology, Muscle Proteins physiology, Muscle, Smooth, Vascular metabolism, Protein Serine-Threonine Kinases metabolism, Transcription, Genetic
- Abstract
Vascular smooth muscle cell (VSMC) phenotypic modulation is characterized by the downregulation of SMC actin cytoskeleton proteins. Our published study shows that depletion of SM22α (aka SM22, Transgelin, an actin cytoskeleton binding protein) promotes inflammation in SMCs by activating NF-κB signal pathways both in cultured VSMCs and in response to vascular injury. The goal of this study is to investigate the underlying molecular mechanisms whereby SM22 suppresses NF-κB signaling pathways under inflammatory condition. NF-κB inducing kinase (Nik, aka MAP3K14, activated by the LTβR) is a key upstream regulator of NF-κB signal pathways. Here, we show that SM22 overexpression suppresses the expression of NIK and its downstream NF-κB canonical and noncanonical signal pathways in a VSMC line treated with a LTβR agonist. SM22 regulates NIK expression at both transcriptional and the proteasome-mediated post-translational levels in VSMCs depending on the culture condition. By qPCR, chromatin immunoprecipitation and luciferase assays, we found that Nik is a transcription target of serum response factor (SRF). Although SM22 is known to be expressed in the cytoplasm, we found that SM22 is also expressed in the nucleus where SM22 interacts with SRF to inhibit the transcription of Nik and prototypical SRF regulated genes including c-fos and Egr3. Moreover, carotid injury increases NIK expression in Sm22-/- mice, which is partially relieved by adenovirally transduced SM22. These findings reveal for the first time that SM22 is expressed in the nucleus in addition to the cytoplasm of VSMCs to regulate the transcription of Nik and its downstream proinflammatory NF-kB signal pathways as a modulator of SRF during vascular inflammation.
- Published
- 2017
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49. The Formin, DIAPH1, is a Key Modulator of Myocardial Ischemia/Reperfusion Injury.
- Author
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O'Shea KM, Ananthakrishnan R, Li Q, Quadri N, Thiagarajan D, Sreejit G, Wang L, Zirpoli H, Aranda JF, Alberts AS, Schmidt AM, and Ramasamy R
- Subjects
- Animals, Cell Line, Disease Models, Animal, Formins, Gene Expression Regulation, Humans, Mice, Myocardial Reperfusion Injury physiopathology, Myocardium pathology, Myocytes, Cardiac pathology, Sarcoplasmic Reticulum Calcium-Transporting ATPases genetics, Signal Transduction genetics, Sodium-Calcium Exchanger genetics, Adaptor Proteins, Signal Transducing genetics, Myocardial Reperfusion Injury genetics, Myocardium metabolism, Myocytes, Cardiac metabolism
- Abstract
The biochemical, ionic, and signaling changes that occur within cardiomyocytes subjected to ischemia are exacerbated by reperfusion; however, the precise mechanisms mediating myocardial ischemia/reperfusion (I/R) injury have not been fully elucidated. The receptor for advanced glycation end-products (RAGE) regulates the cellular response to cardiac tissue damage in I/R, an effect potentially mediated by the binding of the RAGE cytoplasmic domain to the diaphanous-related formin, DIAPH1. The aim of this study was to investigate the role of DIAPH1 in the physiological response to experimental myocardial I/R in mice. After subjecting wild-type mice to experimental I/R, myocardial DIAPH1 expression was increased, an effect that was echoed following hypoxia/reoxygenation (H/R) in H9C2 and AC16 cells. Further, compared to wild-type mice, genetic deletion of Diaph1 reduced infarct size and improved contractile function after I/R. Silencing Diaph1 in H9C2 cells subjected to H/R downregulated actin polymerization and serum response factor-regulated gene expression. Importantly, these changes led to increased expression of sarcoplasmic reticulum Ca
2+ ATPase and reduced expression of the sodium calcium exchanger. This work demonstrates that DIAPH1 is required for the myocardial response to I/R, and that targeting DIAPH1 may represent an adjunctive approach for myocardial salvage after acute infarction., (Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2017
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50. Aldose reductase modulates acute activation of mesenchymal markers via the β-catenin pathway during cardiac ischemia-reperfusion.
- Author
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Thiagarajan D, O' Shea K, Sreejit G, Ananthakrishnan R, Quadri N, Li Q, Schmidt AM, Gabbay K, and Ramasamy R
- Subjects
- Aldehyde Reductase genetics, Animals, Gene Expression Regulation, Mice, Mice, Inbred C57BL, Mice, Knockout, Transforming Growth Factor beta2 metabolism, Up-Regulation, Aldehyde Reductase metabolism, Biomarkers metabolism, Mesoderm metabolism, Myocardial Reperfusion Injury metabolism, beta Catenin metabolism
- Abstract
Aldose reductase (AR: human, AKR1B1; mouse, AKR1B3), the first enzyme in the polyol pathway, plays a key role in mediating myocardial ischemia/reperfusion (I/R) injury. In earlier studies, using transgenic mice broadly expressing human AKR1B1 to human-relevant levels, mice devoid of Akr1b3, and pharmacological inhibitors of AR, we demonstrated that AR is an important component of myocardial I/R injury and that inhibition of this enzyme protects the heart from I/R injury. In this study, our objective was to investigate if AR modulates the β-catenin pathway and consequent activation of mesenchymal markers during I/R in the heart. To test this premise, we used two different experimental models: in vivo, Akr1b3 null mice and wild type C57BL/6 mice (WT) were exposed to acute occlusion of the left anterior descending coronary artery (LAD) followed by recovery for 48 hours or 28 days, and ex-vivo, WT and Akr1b3 null murine hearts were perfused using the Langendorff technique (LT) and subjected to 30 min of global (zero-flow) ischemia followed by 60 min of reperfusion. Our in vivo results reveal reduced infarct size and improved functional recovery at 48 hours in mice devoid of Akr1b3 compared to WT mice. We demonstrate that the cardioprotection observed in Akr1b3 null mice was linked to acute activation of the β-catenin pathway and consequent activation of mesenchymal markers and genes linked to fibrotic remodeling. The increased activity of the β-catenin pathway at 48 hours of recovery post-LAD was not observed at 28 days post-infarction, thus indicating that the observed increase in β-catenin activity was transient in the mice hearts devoid of Akr1b3. In ex vivo studies, inhibition of β-catenin blocked the cardioprotection observed in Akr1b3 null mice hearts. Taken together, these data indicate that AR suppresses acute activation of β-catenin and, thereby, blocks consequent induction of mesenchymal markers during early reperfusion after myocardial ischemia. Inhibition of AR might provide a therapeutic opportunity to optimize cardiac remodeling after I/R injury.
- Published
- 2017
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