15 results on '"Tchaicka, Ligia"'
Search Results
2. Phylogeographic analyses of an endemic Neotropical fox (Lycalopex vetulus) reveal evidence of hybridization with a different canid species (L. gymnocercus).
- Author
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Garcez, Fabricio Silva, Tchaicka, Ligia, Lemos, Frederico Gemesio, Kasper, Carlos Benhur, Dalponte, Júlio Cesar, and Eizirik, Eduardo
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FOXES , *SPECIES hybridization , *INDIGENOUS peoples of South America , *MITOCHONDRIAL DNA , *SPECIES , *GENETIC variation , *CANIDAE - Abstract
The hoary fox (Lycalopex vetulus) is the only species of the Canidae (Mammalia: Carnivora) endemic to Brazil, and so far has been the target of few genetic studies. Using microsatellites and mtDNA markers, we investigated its present genetic diversity and population structure. We also tested the hypothesis that this species currently hybridizes with the pampas fox (L. gymnocercus), as suggested by previous mtDNA data from two individuals. We collected tissue and blood samples from animals representing most of the two species' distributions in Brazil (n = 87), including their recently discovered geographic contact zone in São Paulo state. We observed that the hoary fox exhibits high levels of genetic diversity and low levels of population structure. We identified six individuals from São Paulo state with clear evidence of hybridization based on introgressed pampas fox mitochondrial DNA and/or admixed microsatellite genotypes (three individuals bore both types of evidence). These results demonstrate the existence of admixed individuals between hoary and pampas foxes in southeastern Brazil, representing the first identified case of interspecies admixture between native South American canids. We discuss our findings in the context of the evolutionary history of these foxes and address potential conservation implications of this interspecies hybridization process. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
3. Do roads act as a barrier to gene flow of subterranean small mammals? A case study with Ctenomys minutus
- Author
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Esperandio, Isadora Beraldi, Ascensão, Fernando, Kindel, Andreas, Tchaicka, Ligia, and de Freitas, Thales Renato Ochotorena
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- 2019
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4. Parasitism in gills of Centropomus undecimalis (Pisces, Centropomidae) from a protected area in Sao Luis, Maranhao, Brazil
- Author
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Cantanhede, Sildiane Martins, Campos, Vivian Cristina Sodre, Pereira, Dayane Pestana, Medeiros, Almerinda Macieira, Neta, Raimunda Nonata Fortes Carvalho, Tchaicka, Ligia, and Santos, Debora Martins Silva
- Published
- 2018
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5. Spatial distribution and seasonality of Biomphalaria spp. in São Luís (Maranhão, Brazil)
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David, Nathalia Ferreira, Cantanhede, Selma Patrícia Diniz, Monroe, Natanael Bezerra, Pereira, Luciana Patrícia Lima Alves, Silva-Souza, Nêuton, Abreu-Silva, Ana Lúcia, de Oliveira, Verônica Maria, and Tchaicka, Ligia
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- 2018
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6. Population Analysis of Kinosternon Scorpioides using SSR markers.
- Author
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Almeida Pereira, Lígia, Moraes dos Santos, Edyane, Tchaicka, Ligia, and Lislea de Sousa, Alana
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POPULATION differentiation ,PLANT germplasm ,POPULATION genetics ,HETEROZYGOSITY ,GENE flow - Abstract
Three natural populations of Kinosternon scorpioides located in the region of Baixada Maranhense were studied in order to quantify and compare levels of diversity and genetic structure using SSR markers. Ten microsatellite loci were validated for analysis in 56 individuals. The observed heterozygosities (Ho) were 0.838; 0.691 and 0.741 and the expected (He) 0.824; 0.819 and 0.815 for the populations of São Bento, Pinheiro and Anajatuba, respectively. AMOVA test showed that 98.97% of the total genetic variation is within populations while 1.03% is among populations. The estimated gene flow of 6,882 corroborates the small population differentiation (FST = 0.044). The populations of São Bento and Pinheiro are closer together genetically, according to the presented grouping analysis. These genetic data are important for the elaboration of strategic actions of management and conservation of the chelonians and especially Kinosternon scorpioides. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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- View/download PDF
7. Micronucleus Test in Centropomus undecimalis (BLOCH, 1972) for the Assessment of the Water Quality of two Brazilian Estuaries.
- Author
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Tchaicka, Ligia, Cantanhêde, Sildiane Martins, Pereira, Natália Jovita, Fortes Carvalho Neta, Raimunda Nonata, and Silva Santos, Débora Martins
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CENTROPOMUS , *PREDATORY animals , *BRACKISH water animals , *FISH conservation , *ENVIRONMENTAL quality , *FISH as food , *ERYTHROCYTES - Abstract
Fish species of the Centropomus genus are important food resources in Brazil. The species of this group are predators that feed on small fish and benthic invertebrates, and are therefore vulnerable to bioconcentration and the biomagnification of contaminants. As estuaries are continuously impacted by urbanization, the aim of the present study was to evaluate the quality of two brackish environments located in the Ilha do Maranhão, Brazil, by applying the Micronucleus Test with Centropomus undecimalis. Genotoxic lesions were detected in the erythrocytes using this test. Blood samples were collected through punctures of the gills to produce the blood extensions. The smear was stained with modified Rosenfield dye and 2,000 erythrocytes per fish were analyzed. The micronucleus values differed significantly between the two locations in the rainy season, showing that Centropomus undecimalis is more vulnerable to contamination in the Bacanga River Basin. In view of the results, the Micronucleus Test proved to be an effective tool for the evaluation of the environmental quality of areas, and the data generated in the study can contribute to conservation programs by local management authorities, as the biomarker used allows the evaluation of the health of the environment through two organisms. [ABSTRACT FROM AUTHOR]
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- 2018
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- View/download PDF
8. Scientific and Technological Research on the use of Molecular Markers in Turtles.
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Lislea de Sousa, Alana, Almeida Pereira, Lígia, Diniz Costa, Helmara, Abreu Silva, Ana Lúcia, and Tchaicka, Ligia
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TURTLES ,SCIENCE databases ,LOGGERHEAD turtle ,PATENT databases ,NUMBER theory ,RESEARCH - Abstract
The objective of this prospection was to study the use of molecular markers in turtles. For this, information was obtained on scientific articles in Science Direct, Web of Science and SCOPUS databases as well as on patent documents in INPI, WIPO and EPO databases. Thus, a large number of published studies involving molecular markers were found, although this number is lower when associated with use in turtles. Regarding patents, only one was filed (in 2011), indicating research opportunities in this area. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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9. Spatial distribution and seasonality of <italic>Biomphalaria</italic> spp. in São Luís (Maranhão, Brazil).
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David, Nathalia Ferreira, Cantanhede, Selma Patrícia Diniz, de Oliveira, Verônica Maria, Tchaicka, Ligia, Monroe, Natanael Bezerra, Abreu-Silva, Ana Lúcia, Pereira, Luciana Patrícia Lima Alves, and Silva-Souza, Nêuton
- Subjects
SCHISTOSOMIASIS ,FRESHWATER snails ,BIOMPHALARIA glabrata ,BIOMPHALARIA ,MOLLUSKS - Abstract
Two of the three vector species of
Schistosoma mansoni Sambon, 1907 in Brazil occur in the state of Maranhão:Biomphalaria glabrata (Say, 1818) andBiomphalaria straminea (Dunker, 1848). For the implementation of effective measures to combat schistosomiasis, it is necessary to identify the spatial and seasonal dynamics of these snails. Therefore, this work brought together information from malacological survey carried out in São Luís (Maranhão, Brazil) to identify the spatial and seasonal distribution patterns ofBiomphalaria spp. snails. We used data from malacological surveys of the Municipal Health Secretary of São Luís, conducted between 2006 and 2013 in 23 neighborhoods. We also used data from the mollusk surveys that we conducted for 2 years (2012-2014) in four of these neighborhoods. During the 8-year period (2006-2013), 15,990 specimens ofBiomphalaria spp. were collected. There was a positive association between precipitation and the abundance of mollusks of the genusBiomphalaria . During 2012-2014, a total of 2487 snail specimens were obtained (B. glabrata : 1046 specimens;B. straminea : 1426 specimens). There was a positive correlation between precipitation andB. straminea abundance. High density of human occupation and high precipitation are two factors that affect the distribution and density ofBiomphalaria spp. populations. [ABSTRACT FROM AUTHOR]- Published
- 2018
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10. Analysis of the supply chain and conservation status of sharks (Elasmobranchii: Superorder Selachimorpha) based on fisher knowledge.
- Author
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Martins, Ana Paula Barbosa, Feitosa, Leonardo Manir, Lessa, Rosangela Paula, Almeida, Zafira Silva, Heupel, Michelle, Silva, Wagner Macedo, Tchaicka, Ligia, and Nunes, Jorge Luiz Silva
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SHARKS ,ENVIRONMENTAL law ,SHARK finning ,SUSTAINABLE fisheries ,WILDLIFE conservation ,GOVERNMENT policy - Abstract
Increasing fishing effort has caused declines in shark populations worldwide. Understanding biological and ecological characteristics of sharks is essential to effectively implement management measures, but to fully understand drivers of fishing pressure social factors must be considered through multidisciplinary and integrated approaches. The present study aimed to use fisher and trader knowledge to describe the shark catch and product supply chain in Northeastern Brazil, and evaluate perceptions regarding the regional conservation status of shark species. Non-systematic observations and structured individual interviews were conducted with experienced fishers and traders. The demand and economic value of shark fins has reportedly decreased over the last 10 years while the shark meat trade has increased slightly, including a small increase in the average price per kilogram of meat. Several threatened shark species were reportedly often captured off shore and traded at local markets. This reported and observed harvest breaches current Brazilian environmental laws. Fishing communities are aware of population declines of several shark species, but rarely take action to avoid capture of sharks. The continuing capture of sharks is mainly due to a lack of knowledge of environmental laws, lack of enforcement by responsible authorities, and difficulties encountered by fishers in finding alternative income streams. National and regional conservation measures are immediately required to reduce overfishing on shark populations in Northeastern Brazil. Social and economic improvements for poor fishing communities must also be implemented to achieve sustainable fisheries. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
11. A histopathological and biometric comparison between catfish (Pisces, Ariidae) from a harbor and a protected area, Brazil.
- Author
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Raimunda Nonata Fortes Carvalho Neta, Débora Batista Pinheiro Sousa, Zafira da Silva de Almeida, Débora Martins Silva Santos, and Tchaicka, Ligia
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BIOMETRY ,HISTOPATHOLOGY ,PROTECTED areas ,HARBORS ,CATFISHES ,BIOMARKERS - Abstract
Background Histopathological lesions and biometric variations in catfish species are statistically associated with chemical contaminant exposure. A histopathological and biometric database for the catfish Sciades herzbergii and Bagre bagre from São Luís Island (Port Area) and Caranguejos Island (Reference Area) is presented. Branchial and hepatic lesions were classified into three reaction patterns: 1) circulatory or inflammatory disturbances; 2) regressive changes; 3) progressive changes. This paper summarizes research efforts aimed at characterizing the biomonitoring potential of catfish from two islands in Brazil, which exhibit great habitat diversity and different levels of human intervention. Results The weights and lengths of the catfish caught at the Port Area were smaller than those from the Reference Area. No histopathological lesions were observed in S. herzbergii examined at the reference site (Caranguejos Island). In contrast, 90% of S. herzbergii from sites located in the Port Area (São Luís Island) had one or more types of branchial and hepatic lesions. One or more of the five lesions were observed on 16 B. bagre from São Luís Island and Caranguejos Island. Conclusion The utility of histopathological lesions and biometric data as sensitive indicators of the health of wild catfish populations has been demonstrated. Sciades herzbergii proved to be a better species for biomonitoring because it was more sensitive to the impacted site (Port Area) compared with the region relatively free of contaminants (Reference Area). [ABSTRACT FROM AUTHOR]
- Published
- 2014
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12. A histopathological and biometric comparison between catfish (Pisces, Ariidae) from a harbor and a protected area, Brazil.
- Author
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Carvalho Neta, Raimunda Nonata Fortes, Sousa, Débora Batista Pinheiro, Almeida, Zafira da Silva de, Santos, Débora Martins Silva, and Tchaicka, Ligia
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HISTOPATHOLOGY ,PROTECTED areas ,VARIATION in fishes ,BIOMETRIC identification ,WATER pollution ,BIOMARKERS - Abstract
Background: Histopathological lesions and biometric variations in catfish species are statistically associated with chemical contaminant exposure. A histopathological and biometric database for the catfish Sciades herzbergii and Bagre bagre from São Luís Island (Port Area) and Caranguejos Island (Reference Area) is presented. Branchial and hepatic lesions were classified into three reaction patterns: 1) circulatory or inflammatory disturbances; 2) regressive changes; 3) progressive changes. This paper summarizes research efforts aimed at characterizing the biomonitoring potential of catfish from two islands in Brazil, which exhibit great habitat diversity and different levels of human intervention. Results: The weights and lengths of the catfish caught at the Port Area were smaller than those from the Reference Area. No histopathological lesions were observed in S. herzbergii examined at the reference site (Caranguejos Island). In contrast, 90% of S. herzbergii from sites located in the Port Area (São Luís Island) had one or more types of branchial and hepatic lesions. One or more of the five lesions were observed on 16 B. bagre from São Luís Island and Caranguejos Island. Conclusion: The utility of histopathological lesions and biometric data as sensitive indicators of the health of wild catfish populations has been demonstrated. Sciades herzbergii proved to be a better species for biomonitoring because it was more sensitive to the impacted site (Port Area) compared with the region relatively free of contaminants (Reference Area). [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
13. Phylogeography and population history of the crab-eating fox ( Cerdocyon thous).
- Author
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TCHAICKA, LIGIA, EIZIRIK, EDUARDO, DE OLIVEIRA, TADEU G., CÂNDIDO, JOSÉ FLÁVIO, and FREITAS, THALES R. O.
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CANIDAE , *FOXES , *CARNIVORA , *MITOCHONDRIAL DNA , *DNA , *NUCLEIC acids , *NUCLEOTIDES - Abstract
The crab-eating fox is a medium-sized Neotropical canid with generalist habits and a broad distribution in South America. We have investigated its genetic diversity, population structure and demographic history across most of its geographic range by analysing 512 base pairs (bp) of the mitochondrial DNA (mtDNA) control region, 615 bp of the mtDNA cytochrome b gene and 1573 total nucleotides from three different nuclear fragments. MtDNA data revealed a strong phylogeographic partition between northeastern Brazil and other portions of the species’ distribution, with complete separation between southern and northern components of the Atlantic Forest. We estimated that the two groups diverged from each other c. 400 000–600 000 years ago, and have had contrasting population histories. A recent demographic expansion was inferred for the southern group, while northern populations seem to have had a longer history of large population size. Nuclear sequence data did not support this north–south pattern of subdivision, likely due at least in part to secondary male-mediated historical gene flow, inferred from multilocus coalescent-based analyses. We have compared the inferred phylogeographic patterns to those observed for other Neotropical vertebrates, and report evidence for a major north–south demographic discontinuity that seems to have marked the history of the Atlantic Forest biota. [ABSTRACT FROM AUTHOR]
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- 2007
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14. Cross-amplification and characterization of 13 tetranucleotide microsatellites in multiple species of Neotropical canids.
- Author
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DA FONTOURA-RODRIGUES, MANOEL L., LIMA-ROSA, CARLOS ANDRÉ V., TCHAICKA, LIGIA, VALDEZ, FERNANDA P., RODRIGUES, FLÁVIO H. G., DE PAULA, ROGÉRIO C., GOUGH, MICHAEL P., JOHNSON, WARREN E., BONATTO, SANDRO L., and EIZIRIK, EDUARDO
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DOGS ,ANIMAL species ,MICROSATELLITE repeats ,PROBABILITY theory ,ECOLOGY ,CONSERVATION of natural resources - Abstract
We tested 47 tetranucleotide microsatellite loci developed for the domestic dog in four species of Neotropical canids, aiming to produce a standardized set that could be successfully used even in noninvasive samples across this group. We identified 13 suitable loci, nine of which constitute a standardized set for all species. Considering only the ideal panel of nine loci, the mean expected heterozygosity (averaged across species) per locus ranged from 0.58 to 0.92 (overall mean 0.76), and the maximum probability of identity value was 1.3 × 10
−9 . This set of loci has a great potential for application in evolutionary, ecological and conservation studies. [ABSTRACT FROM AUTHOR]- Published
- 2008
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15. Molecular assessment of the phylogeny and biogeography of a recently diversified endemic group of South American canids (Mammalia: Carnivora: Canidae).
- Author
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Tchaicka L, Freitas TR, Bager A, Vidal SL, Lucherini M, Iriarte A, Novaro A, Geffen E, Garcez FS, Johnson WE, Wayne RK, and Eizirik E
- Abstract
To investigate the evolution and biogeography of an endemic group of South American foxes, we examined mitochondrial DNA control region sequences for 118 individuals belonging to all six extant species of the genus Lycalopex. Phylogenetic and molecular dating analyses supported the inference that this genus has undergone a very recent and rapid radiation, stemming from a common ancestor that lived ca. 1 million years ago. The Brazilian endemic L. vetulus was supported as the most basal species in this genus, whereas the most internal group is comprised by the recently diverged (ca. 350,000 years ago) Andean/Patagonian species L. griseus and L. culpaeus. We discuss the inferred phylogenetic relationships and divergence times in the context of the current geographic distributions of these species, and the likely effects of Pleistocene climatic changes on the biogeography of this group. Furthermore, a remarkable finding was the identification of multiple individuals classified as L. gymnocercus bearing mtDNA haplotypes clearly belonging to L. griseus, sampled in regions where the latter is not known to occur. At a minimum, this result implies the need to clarify the present-day geographic distribution of each of these fox species, while it may also indicate an ongoing hybridization process between them. Future testing of this hypothesis with in-depth analyses of these populations is thus a priority for understanding the history, evolutionary dynamics and present-day composition of this endemic Neotropical genus.
- Published
- 2016
- Full Text
- View/download PDF
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