43 results on '"Stierschneider A"'
Search Results
2. Shedding light on the molecular and regulatory mechanisms of TLR4 signaling in endothelial cells under physiological and inflamed conditions
- Author
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Anna Stierschneider and Christoph Wiesner
- Subjects
toll-like receptor 4 signaling ,endothelium ,pro-inflammatory response ,lipopolysaccharide ,optogenetic control ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Toll-like receptor 4 (TLR4) are part of the innate immune system. They are capable of recognizing pathogen-associated molecular patterns (PAMPS) of microbes, and damage-associated molecular patterns (DAMPs) of damaged tissues. Activation of TLR4 initiates downstream signaling pathways that trigger the secretion of cytokines, type I interferons, and other pro-inflammatory mediators that are necessary for an immediate immune response. However, the systemic release of pro-inflammatory proteins is a powerful driver of acute and chronic inflammatory responses. Over the past decades, immense progress has been made in clarifying the molecular and regulatory mechanisms of TLR4 signaling in inflammation. However, the most common strategies used to study TLR4 signaling rely on genetic manipulation of the TLR4 or the treatment with agonists such as lipopolysaccharide (LPS) derived from the outer membrane of Gram-negative bacteria, which are often associated with the generation of irreversible phenotypes in the target cells or unintended cytotoxicity and signaling crosstalk due to off-target or pleiotropic effects. Here, optogenetics offers an alternative strategy to control and monitor cellular signaling in an unprecedented spatiotemporally precise, dose-dependent, and non-invasive manner. This review provides an overview of the structure, function and signaling pathways of the TLR4 and its fundamental role in endothelial cells under physiological and inflammatory conditions, as well as the advances in TLR4 modulation strategies.
- Published
- 2023
- Full Text
- View/download PDF
3. Fastening in Rock Mass—Structural Design of Shallow Embedded Anchors in Inhomogeneous Substrate.
- Author
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Lamplmair-Irsigler, Stefan, Zeman, Oliver, Stierschneider, Elisabeth, and Voit, Klaus
- Subjects
BASES (Architecture) ,CONCRETE masonry ,ROCK properties ,SAFETY factor in engineering ,GRANULITE ,DOLOMITE - Abstract
Unlike traditional base materials such as concrete or masonry, there are no guidelines for rock as a base material for post-installed anchors. The varying rock properties (e.g., rock type, discontinuities) and numerous installation parameters (e.g., embedment depth, anchor diameter) leave engineers with limited information on design resistances, leading to an uncertain basis for anchor applications in rock. To identify the key parameters that determine rock as a base material, an evaluation of rock characteristics was conducted, combined with in situ pull-out tests in different key geologies (granite, limestone, mica schist, dolomite, granulite) and discrete element modeling, which has been found to be suitable for investigating the load-bearing behavior of post-installed anchors in rock. Discontinuities were identified as the main factor influencing the load-bearing capacity of post-installed anchors in rock mass. Based on the in situ investigations, assessment methods for rock as a base material were proposed, along with corresponding resistance partial safety factors for design of 2.5, 2.0, and 1.7 for high, medium, and low levels of uncertainty regarding possible inhomogeneities. A limit value R ≥ 36, associated with rebound hammer assessments, was defined for the low degree of uncertainty, showing limitations for schistose rock. This is concluded by a design approach for determining design resistances of shallow fasteners in rock mass. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
4. Freeze-Thaw Behaviour of Post-Installed Bonded Anchors under Changing Climate Conditions
- Author
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Elisabeth Stierschneider, Oliver Zeman, and Konrad Bergmeister
- Subjects
freeze-thaw condition tests ,bonded fasteners ,climatic conditions ,displacement stabilisation ,modified test protocol ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
The freeze-thaw behaviour of bonded fasteners in concrete is assessed according to the European Assessment Document 330499-01-0601 with freeze-thaw condition tests, which include 50 temperature cycles with a duration of 24 h between −20 °C and +20 °C on constantly loaded anchors. It is assumed that one cycle is equivalent to the temperature difference, which a bonded fastener undergoes in one year. Based on an analysis of a 28-year time series of air temperature data for Austria respecting the Alpine region, a modified test protocol with a temperature amplitude of 65 °C between −20 °C and +45 °C is compiled without a predefinition of the number of cycles, in order to simulate temperature differences that occur under real climatic conditions. The experimental test results obtained for both test procedures demonstrate that the stabilization of the displacements for the modified test series occurred after 185 temperature cycles, compared to the 50 cycles for the standard method. This means that an increase in the temperature amplitude of 25 °C in the higher temperature range leads to an approximately 3.5 times higher number of required temperature cycles until displacement stabilization is reached. It is concluded that the definition of the used temperature range for freeze-thaw testing in conjunction with climatic data should be critically considered, in order to possibly adapt pure freeze-thaw tests towards experiments that take into account real annual temperature differences.
- Published
- 2022
- Full Text
- View/download PDF
5. Influencing factors on creep displacement assessment of bonded fasteners in concrete
- Author
-
Stierschneider, Elisabeth, Tamparopoulos, Alexios E., McBride, Kenton E., and Bergmeister, Konrad
- Published
- 2021
- Full Text
- View/download PDF
6. Looking for the needle in a downsized haystack: Whole‐exome sequencing unravels genomic signals of climatic adaptation in Douglas‐fir (Pseudotsuga menziesii)
- Author
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Jan‐Peter George, Silvio Schueler, Michael Grabner, Sandra Karanitsch‐Ackerl, Konrad Mayer, Michael Stierschneider, Lambert Weissenbacher, and Marcela vanLoo
- Subjects
climatic adaptation ,common garden experiment ,Douglas‐fir ,environmental association analysis ,exome capture ,Ecology ,QH540-549.5 - Abstract
Abstract Conifers often occur along steep gradients of diverse climates throughout their natural ranges, which is expected to result in spatially varying selection to local climate conditions. However, signals of climatic adaptation can often be confounded, because unraveled clines covary with signals caused by neutral evolutionary processes such as gene flow and genetic drift. Consequently, our understanding of how selection and gene flow have shaped phenotypic and genotypic differentiation in trees is still limited. A 40‐year‐old common garden experiment comprising 16 Douglas‐fir (Pseudotsuga menziesii) provenances from a north‐to‐south gradient of approx. 1,000 km was analyzed, and genomic information was obtained from exome capture, which resulted in an initial genomic dataset of >90,000 single nucleotide polymorphisms. We used a restrictive and conservative filtering approach, which permitted us to include only SNPs and individuals in environmental association analysis (EAA) that were free of potentially confounding effects (LD, relatedness among trees, heterozygosity deficiency, and deviations from Hardy–Weinberg proportions). We used four conceptually different genome scan methods based on FST outlier detection and gene–environment association in order to disentangle truly adaptive SNPs from neutral SNPs. We found that a relatively small proportion of the exome showed a truly adaptive signal (0.01%–0.17%) when population substructuring and multiple testing was accounted for. Nevertheless, the unraveled SNP candidates showed significant relationships with climate at provenance origins, which strongly suggests that they have featured adaptation in Douglas‐fir along a climatic gradient. Two SNPs were independently found by three of the employed algorithms, and one of them is in close proximity to an annotated gene involved in circadian clock control and photoperiodism as was similarly found in Populus balsamifera. Synthesis. We conclude that despite neutral evolutionary processes, phenotypic and genomic signals of adaptation to climate are responsible for differentiation, which in particular explain disparity between the well‐known coastal and interior varieties of Douglas‐fir.
- Published
- 2021
- Full Text
- View/download PDF
7. Probabilistic analysis of crack widths associated with quality control procedures.
- Author
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Stierschneider, Elisabeth, Strieder, Emanuel, Hilber, Raimund, Strauss, Alfred, and Bergmeister, Konrad
- Subjects
- *
TUNNEL lining , *QUALITY control , *GEOMETRIC analysis , *SENSITIVITY analysis , *DURABILITY - Abstract
Existing concrete specifications limit the crack width in order to fulfill the limits of serviceability and durability. The crack width calculation results differ depending on the influences of the variability of the used materials, the geometry, the actions and the uncertainty of the used calculation model itself. In this contribution, the influence of the variability of the input parameters on the calculated crack width is investigated using probabilistic methods in a real case study of a highly loaded tunnel lining cross‐section. The primary objective of this study is a sensitivity analysis to identify the geometric and material‐related input parameters with the most significant influence, which must be particularly controlled during execution for quality control purposes. The study in this article is based on the Eurocode deterministic model for calculating crack width for a stabilized cracking stage in late concrete age. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
8. Beyond Pattern Recognition: TLR2 Promotes Chemotaxis, Cell Adhesion, and Migration in THP-1 Cells
- Author
-
Katrin Colleselli, Marie Ebeyer-Masotta, Benjamin Neuditschko, Anna Stierschneider, Christopher Pollhammer, Mia Potocnjak, Harald Hundsberger, Franz Herzog, and Christoph Wiesner
- Subjects
Toll-like receptor 2 ,chemotaxis ,cell adhesion ,cell migration ,THP-1 ,Cytology ,QH573-671 - Abstract
The interaction between monocytes and endothelial cells in inflammation is central to chemoattraction, adhesion, and transendothelial migration. Key players, such as selectins and their ligands, integrins, and other adhesion molecules, and their functions in these processes are well studied. Toll-like receptor 2 (TLR2), expressed in monocytes, is critical for sensing invading pathogens and initiating a rapid and effective immune response. However, the extended role of TLR2 in monocyte adhesion and migration has only been partially elucidated. To address this question, we performed several functional cell-based assays using monocyte-like wild type (WT), TLR2 knock-out (KO), and TLR2 knock-in (KI) THP-1 cells. We found that TLR2 promotes the faster and stronger adhesion of monocytes to the endothelium and a more intense endothelial barrier disruption after endothelial activation. In addition, we performed quantitative mass spectrometry, STRING protein analysis, and RT-qPCR, which not only revealed the association of TLR2 with specific integrins but also uncovered novel proteins affected by TLR2. In conclusion, we show that unstimulated TLR2 influences cell adhesion, endothelial barrier disruption, migration, and actin polymerization.
- Published
- 2023
- Full Text
- View/download PDF
9. Comparative and Temporal Characterization of LPS and Blue-Light-Induced TLR4 Signal Transduction and Gene Expression in Optogenetically Manipulated Endothelial Cells
- Author
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Anna Stierschneider, Benjamin Neuditschko, Katrin Colleselli, Harald Hundsberger, Franz Herzog, and Christoph Wiesner
- Subjects
endothelial cells ,Toll-like receptor 4 ,lipopolysaccharide ,optogenetic control ,pro-inflammatory proteins ,quantitative mass-spectrometry ,Cytology ,QH573-671 - Abstract
In endothelial cells (ECs), stimulation of Toll-like receptor 4 (TLR4) by the endotoxin lipopolysaccharide (LPS) induces the release of diverse pro-inflammatory mediators, beneficial in controlling bacterial infections. However, their systemic secretion is a main driver of sepsis and chronic inflammatory diseases. Since distinct and rapid induction of TLR4 signaling is difficult to achieve with LPS due to the specific and non-specific affinity to other surface molecules and receptors, we engineered new light-oxygen-voltage-sensing (LOV)-domain-based optogenetic endothelial cell lines (opto-TLR4-LOV LECs and opto-TLR4-LOV HUVECs) that allow fast, precise temporal, and reversible activation of TLR4 signaling pathways. Using quantitative mass-spectrometry, RT-qPCR, and Western blot analysis, we show that pro-inflammatory proteins were not only expressed differently, but also had a different time course when the cells were stimulated with light or LPS. Additional functional assays demonstrated that light induction promoted chemotaxis of THP-1 cells, disruption of the EC monolayer and transmigration. In contrast, ECs incorporating a truncated version of the TLR4 extracellular domain (opto-TLR4 ΔECD2-LOV LECs) revealed high basal activity with fast depletion of the cell signaling system upon illumination. We conclude that the established optogenetic cell lines are well suited to induce rapid and precise photoactivation of TLR4, allowing receptor-specific studies.
- Published
- 2023
- Full Text
- View/download PDF
10. Cancer-type organic anion transporting polypeptide 1B3 is a target for cancer suicide gene therapy using RNA trans-splicing technology
- Author
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Sun, Yuchen, Piñón Hofbauer, Josefina, Harada, Manami, Wöss, Katharina, Koller, Ulrich, Morio, Hanae, Stierschneider, Anna, Kitamura, Keita, Hashimoto, Mari, Chiba, Kan, Akita, Hidetaka, Anzai, Naohiko, Reichelt, Julia, Bauer, Johann W., Guttmann-Gruber, Christina, and Furihata, Tomomi
- Published
- 2018
- Full Text
- View/download PDF
11. COST TU1404 benchmark on macroscopic modelling of concrete and concrete structures at early age: Proof-of-concept stage
- Author
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Jędrzejewska, Agnieszka, Benboudjema, Farid, Lacarrière, Laurie, Azenha, Miguel, Schlicke, Dirk, Dal Pont, Stefano, Delaplace, Arnaud, Granja, José, Hájková, Karolina, Joachim Heinrich, Peter, Sciumè, Giuseppe, Strieder, Emanuel, Stierschneider, Elisabeth, Šmilauer, Vít, and Troyan, Vyacheslav
- Published
- 2018
- Full Text
- View/download PDF
12. Shedding light on the molecular and regulatory mechanisms of TLR4 signaling in endothelial cells under physiological and inflamed conditions.
- Author
-
Stierschneider, Anna and Wiesner, Christoph
- Subjects
TOLL-like receptors ,ENDOTHELIAL cells ,TYPE I interferons ,CELL communication ,CYTOTOXINS - Abstract
Toll-like receptor 4 (TLR4) are part of the innate immune system. They are capable of recognizing pathogen-associated molecular patterns (PAMPS) of microbes, and damage-associated molecular patterns (DAMPs) of damaged tissues. Activation of TLR4 initiates downstream signaling pathways that trigger the secretion of cytokines, type I interferons, and other pro-inflammatory mediators that are necessary for an immediate immune response. However, the systemic release of pro-inflammatory proteins is a powerful driver of acute and chronic inflammatory responses. Over the past decades, immense progress has been made in clarifying the molecular and regulatory mechanisms of TLR4 signaling in inflammation. However, the most common strategies used to study TLR4 signaling rely on genetic manipulation of the TLR4 or the treatment with agonists such as lipopolysaccharide (LPS) derived from the outer membrane of Gram-negative bacteria, which are often associated with the generation of irreversible phenotypes in the target cells or unintended cytotoxicity and signaling crosstalk due to off-target or pleiotropic effects. Here, optogenetics offers an alternative strategy to control and monitor cellular signaling in an unprecedented spatiotemporally precise, dose-dependent, and non-invasive manner. This review provides an overview of the structure, function and signaling pathways of the TLR4 and its fundamental role in endothelial cells under physiological and inflammatory conditions, as well as the advances in TLR4 modulation strategies. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
13. Concentration-Dependent Pro- and Antitumor Activities of Quercetin in Human Melanoma Spheroids: Comparative Analysis of 2D and 3D Cell Culture Models
- Author
-
Harald Hundsberger, Anna Stierschneider, Victoria Sarne, Doris Ripper, Jasmin Schimon, Hans Peter Weitzenböck, Dominik Schild, Nico Jacobi, Andreas Eger, Josef Atzler, Christian T. Klein, and Christoph Wiesner
- Subjects
quercetin ,phenotypic drug screening ,melanoma ,3D spheroids ,Nrf2 signaling ,Organic chemistry ,QD241-441 - Abstract
Quercetin, a dietary flavonoid found in fruits and vegetables, has been described as a substance with many anti-cancer properties in a variety of preclinical investigations. In the present study, we demonstrate that 2D and 3D melanoma models exhibit not only different sensitivities to quercetin, but also opposite, cancer-promoting effects when metastatic melanoma spheroids are treated with quercetin. Higher concentrations of quercetin reduce melanoma growth in three tested cell lines, whereas low concentrations induce the opposite effect in metastatic melanoma spheroids but not in the non-metastatic cell line. High (>12.5 µM) or low (0.4 µM), whereas in 3D spheroids apoptotic cells, caspase 3 activity can only be detected in concentrations ≥12.5 µM. Further, we show that the tumor promoting or repressing effect in the 3D metastatic melanoma spheroids are likely to be elicited by a precisely controlled regulation of Nrf2/ARE-mediated cytoprotective genes, as well as ERK and NF-κB phosphorylation. According to the results obtained here, further studies are needed to better characterize the mechanisms of action underlying the pro- and anti-carcinogenic effects of quercetin on human melanomas.
- Published
- 2021
- Full Text
- View/download PDF
14. An Update on Toll-like Receptor 2, Its Function and Dimerization in Pro- and Anti-Inflammatory Processes.
- Author
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Colleselli, Katrin, Stierschneider, Anna, and Wiesner, Christoph
- Subjects
- *
PATTERN perception receptors , *DIMERIZATION , *INFLAMMATION , *HETERODIMERS , *NEURODEGENERATION - Abstract
While a certain level of inflammation is critical for humans to survive infection and injury, a prolonged inflammatory response can have fatal consequences. Pattern recognition Toll-like receptors (TLRs) are key players in the initiation of an inflammatory process. TLR2 is one of the most studied pattern recognition receptors (PRRs) and is known to form heterodimers with either TLR1, TLR4, TLR6, and TLR10, allowing it to recognize a wide range of pathogens. Although a large number of studies have been conducted over the past decades, there are still many unanswered questions regarding TLR2 mechanisms in health and disease. In this review, we provide an up-to-date overview of TLR2, including its homo- and heterodimers. Furthermore, we will discuss the pro- and anti-inflammatory properties of TLR2 and recent findings in prominent TLR2-associated infectious and neurodegenerative diseases. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
15. Ecophysiological and transcriptomic responses of oak ( Quercus robur) to long-term drought exposure and rewatering
- Author
-
Spieß, Nadine, Oufir, Mouhssin, Matušíková, Ildikó, Stierschneider, Michael, Kopecky, Dieter, Homolka, Andreas, Burg, Kornel, Fluch, Silvia, Hausman, Jean-Francois, and Wilhelm, Eva
- Published
- 2012
- Full Text
- View/download PDF
16. Transcriptomic changes in wind-exposed poplar leaves are dependent on developmental stage
- Author
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Fluch, Silvia, Olmo, Christian Carlo, Tauber, Stefanie, Stierschneider, Michael, Kopecky, Dieter, Reichenauer, Thomas G., and Matušíková, Ildikó
- Published
- 2008
17. Evaluating a Targeted Cancer Therapy Approach Mediated by RNA trans-Splicing In Vitro and in a Xenograft Model for Epidermolysis Bullosa-Associated Skin Cancer
- Author
-
Katharina Woess, Yuchen Sun, Hanae Morio, Anna Stierschneider, Anna Kaufmann, Stefan Hainzl, Lisa Trattner, Thomas Kocher, Birgit Tockner, Victoria Leb-Reichl, Markus Steiner, Gabriele Brachtl, Andrew P. South, Johann W. Bauer, Julia Reichelt, Tomomi Furihata, Verena Wally, Ulrich Koller, Josefina Piñón Hofbauer, and Christina Guttmann-Gruber
- Subjects
squamous cell carcinoma ,Skin Neoplasms ,ganciclovir ,Cell Survival ,QH301-705.5 ,RNA Splicing ,cancer gene therapy ,Article ,Catalysis ,Cell Line ,Trans-Splicing ,Inorganic Chemistry ,Mice ,Animals ,Humans ,epidermolysis bullosa ,Biology (General) ,Physical and Theoretical Chemistry ,QD1-999 ,Molecular Biology ,Spectroscopy ,Organic Chemistry ,Disease Management ,herpes simplex virus thymidine kinase ,Genetic Therapy ,General Medicine ,Xenograft Model Antitumor Assays ,Epidermolysis Bullosa Dystrophica ,Computer Science Applications ,Disease Models, Animal ,Chemistry ,spliceosome mediated RNA trans-splicing ,Gene Expression Regulation ,Genetic Loci ,Ct-SLCO1B3 ,Disease Susceptibility - Abstract
Conventional anti-cancer therapies based on chemo- and/or radiotherapy represent highly effective means to kill cancer cells but lack tumor specificity and, therefore, result in a wide range of iatrogenic effects. A promising approach to overcome this obstacle is spliceosome-mediated RNA trans-splicing (SMaRT), which can be leveraged to target tumor cells while leaving normal cells unharmed. Notably, a previously established RNA trans-splicing molecule (RTM44) showed efficacy and specificity in exchanging the coding sequence of a cancer target gene (Ct-SLCO1B3) with the suicide gene HSV1-thymidine kinase in a colorectal cancer model, thereby rendering tumor cells sensitive to the prodrug ganciclovir (GCV). In the present work, we expand the application of this approach, using the same RTM44 in aggressive skin cancer arising in the rare genetic skin disease recessive dystrophic epidermolysis bullosa (RDEB). Stable expression of RTM44, but not a splicing-deficient control (NC), in RDEB-SCC cells resulted in expression of the expected fusion product at the mRNA and protein level. Importantly, systemic GCV treatment of mice bearing RTM44-expressing cancer cells resulted in a significant reduction in tumor volume and weight compared with controls. Thus, our results demonstrate the applicability of RTM44-mediated targeting of the cancer gene Ct-SLCO1B3 in a different malignancy.
- Published
- 2022
- Full Text
- View/download PDF
18. Beyond Pattern Recognition: TLR2 Promotes Chemotaxis, Cell Adhesion, and Migration in THP-1 Cells.
- Author
-
Colleselli, Katrin, Ebeyer-Masotta, Marie, Neuditschko, Benjamin, Stierschneider, Anna, Pollhammer, Christopher, Potocnjak, Mia, Hundsberger, Harald, Herzog, Franz, and Wiesner, Christoph
- Subjects
CELL migration ,PATTERN recognition systems ,CELL adhesion ,CHEMOTAXIS ,TOLL-like receptors ,SELECTINS - Abstract
The interaction between monocytes and endothelial cells in inflammation is central to chemoattraction, adhesion, and transendothelial migration. Key players, such as selectins and their ligands, integrins, and other adhesion molecules, and their functions in these processes are well studied. Toll-like receptor 2 (TLR2), expressed in monocytes, is critical for sensing invading pathogens and initiating a rapid and effective immune response. However, the extended role of TLR2 in monocyte adhesion and migration has only been partially elucidated. To address this question, we performed several functional cell-based assays using monocyte-like wild type (WT), TLR2 knock-out (KO), and TLR2 knock-in (KI) THP-1 cells. We found that TLR2 promotes the faster and stronger adhesion of monocytes to the endothelium and a more intense endothelial barrier disruption after endothelial activation. In addition, we performed quantitative mass spectrometry, STRING protein analysis, and RT-qPCR, which not only revealed the association of TLR2 with specific integrins but also uncovered novel proteins affected by TLR2. In conclusion, we show that unstimulated TLR2 influences cell adhesion, endothelial barrier disruption, migration, and actin polymerization. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
19. Comparative and Temporal Characterization of LPS and Blue-Light-Induced TLR4 Signal Transduction and Gene Expression in Optogenetically Manipulated Endothelial Cells.
- Author
-
Stierschneider, Anna, Neuditschko, Benjamin, Colleselli, Katrin, Hundsberger, Harald, Herzog, Franz, and Wiesner, Christoph
- Subjects
ENDOTHELIAL cells ,TOLL-like receptors ,CELLULAR signal transduction ,GENE expression ,WESTERN immunoblotting ,ENDOTOXINS - Abstract
In endothelial cells (ECs), stimulation of Toll-like receptor 4 (TLR4) by the endotoxin lipopolysaccharide (LPS) induces the release of diverse pro-inflammatory mediators, beneficial in controlling bacterial infections. However, their systemic secretion is a main driver of sepsis and chronic inflammatory diseases. Since distinct and rapid induction of TLR4 signaling is difficult to achieve with LPS due to the specific and non-specific affinity to other surface molecules and receptors, we engineered new light-oxygen-voltage-sensing (LOV)-domain-based optogenetic endothelial cell lines (opto-TLR4-LOV LECs and opto-TLR4-LOV HUVECs) that allow fast, precise temporal, and reversible activation of TLR4 signaling pathways. Using quantitative mass-spectrometry, RT-qPCR, and Western blot analysis, we show that pro-inflammatory proteins were not only expressed differently, but also had a different time course when the cells were stimulated with light or LPS. Additional functional assays demonstrated that light induction promoted chemotaxis of THP-1 cells, disruption of the EC monolayer and transmigration. In contrast, ECs incorporating a truncated version of the TLR4 extracellular domain (opto-TLR4 ΔECD2-LOV LECs) revealed high basal activity with fast depletion of the cell signaling system upon illumination. We conclude that the established optogenetic cell lines are well suited to induce rapid and precise photoactivation of TLR4, allowing receptor-specific studies. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
20. FE-Study on the Effect of Gradient Concrete on Early Constraint and Crack Risk
- Author
-
Emanuel Strieder, Raimund Hilber, Elisabeth Stierschneider, and Konrad Bergmeister
- Subjects
gradient concrete ,mass concrete ,constraint ,early age concrete ,hydration ,durability ,crack risk ,numerical simulation ,performance-based design ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In long-lasting mass concrete structures the desired material properties of the concrete mix to realize a durable concrete and a concrete surface without cracks conflict with each other. The requirement of concrete with high durability leads to high thermal energy release and therefore, as another consequence, to high crack risk. Crack reduction is achieved by use of concrete with low hydration energy, which on the other hand leads to a decrease in concrete durability. Besides from optimized base materials and concrete technology, a gradient material distribution in the cross-section could reduce the problem since durable concrete is needed near the surface and the requirement of low-hydration energy is located in the center of the member. A simplified model is used to investigate the possible effect of a gradient concrete material distribution in mass concrete structures on crack reduction. The results of the analysis show that gradient concrete might contribute to lowering the constraint stresses and therefore the crack risk during concrete hardening.
- Published
- 2018
- Full Text
- View/download PDF
21. Composition of the ANTIGENome of Helicobacter pylori defined by human serum antibodies
- Author
-
Meinke, Andreas, Storm, Martin, Henics, Tamás, Gelbmann, Dieter, Prustomersky, Sonja, Kovács, Zoltán, Minh, Duc Bui, Noiges, Birgit, Stierschneider, Ulrike, Berger, Manfred, von Gabain, Alexander, Engstrand, Lars, and Nagy, Eszter
- Published
- 2009
- Full Text
- View/download PDF
22. In silico search for drought-responsive genes in plants on the basis of scientific data: case study on poplar roots
- Author
-
Kopecky, Dieter, Matušíková, Ildikó, Sziderics, Astrid Heide, Trognitz, Friederike, Spieß, Nadine, Stierschneider, Michael, and Fluch, Silvia
- Published
- 2013
- Full Text
- View/download PDF
23. Concentration-Dependent Pro- and Antitumor Activities of Quercetin in Human Melanoma Spheroids: Comparative Analysis of 2D and 3D Cell Culture Models
- Author
-
Doris Ripper, Christoph Wiesner, Victoria Sarne, Hans Peter Weitzenböck, Anna Stierschneider, Nico Jacobi, Dominik Schild, Josef Atzler, Jasmin Schimon, Christian Klein, Harald Hundsberger, and Andreas Eger
- Subjects
MAPK/ERK pathway ,Cell Survival ,MAP Kinase Signaling System ,NF-E2-Related Factor 2 ,Pharmaceutical Science ,Antineoplastic Agents ,Nrf2 signaling ,Article ,Analytical Chemistry ,quercetin ,lcsh:QD241-441 ,03 medical and health sciences ,chemistry.chemical_compound ,3D cell culture ,0302 clinical medicine ,lcsh:Organic chemistry ,Cell Line, Tumor ,Spheroids, Cellular ,Drug Discovery ,medicine ,melanoma ,Humans ,heterocyclic compounds ,3D spheroids ,Phosphorylation ,Physical and Theoretical Chemistry ,Cell Proliferation ,030304 developmental biology ,0303 health sciences ,Melanoma ,Organic Chemistry ,NF-kappa B ,Spheroid ,medicine.disease ,Gene Expression Regulation, Neoplastic ,chemistry ,phenotypic drug screening ,Chemistry (miscellaneous) ,Apoptosis ,Cell culture ,030220 oncology & carcinogenesis ,Cancer research ,Molecular Medicine ,Quercetin ,Carboxylic Ester Hydrolases - Abstract
Quercetin, a dietary flavonoid found in fruits and vegetables, has been described as a substance with many anti-cancer properties in a variety of preclinical investigations. In the present study, we demonstrate that 2D and 3D melanoma models exhibit not only different sensitivities to quercetin, but also opposite, cancer-promoting effects when metastatic melanoma spheroids are treated with quercetin. Higher concentrations of quercetin reduce melanoma growth in three tested cell lines, whereas low concentrations induce the opposite effect in metastatic melanoma spheroids but not in the non-metastatic cell line. High (>, 12.5 µ, M) or low (<, 6.3 µ, M) quercetin concentrations decrease or enhance cell viability, spheroid size, and cell proliferation, respectively. Additionally, melanoma cells cultivated in 2D already show significant caspase 3 activity at very low concentrations (>, 0.4 µ, M), whereas in 3D spheroids apoptotic cells, caspase 3 activity can only be detected in concentrations &ge, M. Further, we show that the tumor promoting or repressing effect in the 3D metastatic melanoma spheroids are likely to be elicited by a precisely controlled regulation of Nrf2/ARE-mediated cytoprotective genes, as well as ERK and NF-&kappa, B phosphorylation. According to the results obtained here, further studies are needed to better characterize the mechanisms of action underlying the pro- and anti-carcinogenic effects of quercetin on human melanomas.
- Published
- 2021
24. Sensitivitätsbetrachtungen zur rückwärtigen Schädigung des Betons beim Durchbohren dünner Bauteile.
- Author
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Zeman, Oliver, Stierschneider, Elisabeth, Voit, Klaus, Köttl, Philipp, and Bergmeister, Konrad
- Subjects
- *
LOGNORMAL distribution , *DRILLING & boring - Abstract
Sensitivity analysis of backward concrete breakout when drilling through thin structural elements This technical paper deals with the backward damage of concrete when drilling through concrete structures of different thickness and composition. Particularly when installing fixings in very thin structural elements – such as slabs and panels of pre‐stressed hollow core elements or façades – it may be necessary to drill completely through the fastening surface when making the drill hole. Drilling through results in the occurrence of a backward concrete damage on the opposite side of the start of the drilling process. This is relevant if any post‐installed fastenings lose a large proportion of their embedment depth in the concrete due to the backward damage. In this contribution, based on more than 400 boreholes, the characteristics of the backward concrete damage are investigated as a function of the parameters component thickness, borehole diameter, maximum aggregate size, drilling method and impact energy of the drilling machine. Based on the investigations, it can be shown that the depths and volumes of the backward concrete damage follow a logarithmic normal distribution. This makes it possible to statistically describe the size of the backward damage and thus to find an approach for determining the remaining anchorage depth. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
25. Endoscopic examination of the upper respiratory tract and oesophagus in small ruminants: Technique and normal appearance
- Author
-
Stierschneider, Martina, Franz, Sonja, and Baumgartner, Walter
- Published
- 2007
- Full Text
- View/download PDF
26. Variation for resistance to head blight caused by Fusarium graminearum in wild emmer (Triticum dicoccoides) originating from Israel
- Author
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Buerstmayr, Hermann, Stierschneider, Michael, Steiner, Barbara, Lemmens, Marc, Griesser, Michaela, Nevo, Eviatar, and Fahima, Tzion
- Published
- 2003
- Full Text
- View/download PDF
27. Molecular mapping of QTLs for Fusarium head blight resistance in spring wheat. I. Resistance to fungal spread (Type II resistance)
- Author
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Buerstmayr, H., Lemmens, M., Hartl, L., Doldi, L., Steiner, B., Stierschneider, M., and Ruckenbauer, P.
- Published
- 2002
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28. Freeze-Thaw Behaviour of Post-Installed Bonded Anchors under Changing Climate Conditions.
- Author
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Stierschneider, Elisabeth, Zeman, Oliver, and Bergmeister, Konrad
- Subjects
FREEZE-thaw cycles ,CLIMATE change ,FASTENERS ,CONCRETE ,DISPLACEMENT (Mechanics) - Abstract
The freeze-thaw behaviour of bonded fasteners in concrete is assessed according to the European Assessment Document 330499-01-0601 with freeze-thaw condition tests, which include 50 temperature cycles with a duration of 24 h between −20 °C and +20 °C on constantly loaded anchors. It is assumed that one cycle is equivalent to the temperature difference, which a bonded fastener undergoes in one year. Based on an analysis of a 28-year time series of air temperature data for Austria respecting the Alpine region, a modified test protocol with a temperature amplitude of 65 °C between −20 °C and +45 °C is compiled without a predefinition of the number of cycles, in order to simulate temperature differences that occur under real climatic conditions. The experimental test results obtained for both test procedures demonstrate that the stabilization of the displacements for the modified test series occurred after 185 temperature cycles, compared to the 50 cycles for the standard method. This means that an increase in the temperature amplitude of 25 °C in the higher temperature range leads to an approximately 3.5 times higher number of required temperature cycles until displacement stabilization is reached. It is concluded that the definition of the used temperature range for freeze-thaw testing in conjunction with climatic data should be critically considered, in order to possibly adapt pure freeze-thaw tests towards experiments that take into account real annual temperature differences. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
29. Effects of transgenic glufosinate-tolerant oilseed rape (Brassica napus) and the associated herbicide application on eubacterial and Pseudomonas communities in the rhizosphere
- Author
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Gyamfi, Stephen, Pfeifer, Ulrike, Stierschneider, Michael, and Sessitsch, Angela
- Published
- 2002
- Full Text
- View/download PDF
30. Looking for the needle in a downsized haystack: Whole‐exome sequencing unravels genomic signals of climatic adaptation in Douglas‐fir (Pseudotsuga menziesii).
- Author
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George, Jan‐Peter, Schueler, Silvio, Grabner, Michael, Karanitsch‐Ackerl, Sandra, Mayer, Konrad, Stierschneider, Michael, Weissenbacher, Lambert, and Loo, Marcela
- Subjects
DOUGLAS fir ,GENETIC drift ,PHENOTYPES ,GENOTYPES ,SINGLE nucleotide polymorphisms ,CLOCK genes ,GENE flow - Abstract
Conifers often occur along steep gradients of diverse climates throughout their natural ranges, which is expected to result in spatially varying selection to local climate conditions. However, signals of climatic adaptation can often be confounded, because unraveled clines covary with signals caused by neutral evolutionary processes such as gene flow and genetic drift. Consequently, our understanding of how selection and gene flow have shaped phenotypic and genotypic differentiation in trees is still limited.A 40‐year‐old common garden experiment comprising 16 Douglas‐fir (Pseudotsuga menziesii) provenances from a north‐to‐south gradient of approx. 1,000 km was analyzed, and genomic information was obtained from exome capture, which resulted in an initial genomic dataset of >90,000 single nucleotide polymorphisms. We used a restrictive and conservative filtering approach, which permitted us to include only SNPs and individuals in environmental association analysis (EAA) that were free of potentially confounding effects (LD, relatedness among trees, heterozygosity deficiency, and deviations from Hardy–Weinberg proportions). We used four conceptually different genome scan methods based on FST outlier detection and gene–environment association in order to disentangle truly adaptive SNPs from neutral SNPs.We found that a relatively small proportion of the exome showed a truly adaptive signal (0.01%–0.17%) when population substructuring and multiple testing was accounted for. Nevertheless, the unraveled SNP candidates showed significant relationships with climate at provenance origins, which strongly suggests that they have featured adaptation in Douglas‐fir along a climatic gradient. Two SNPs were independently found by three of the employed algorithms, and one of them is in close proximity to an annotated gene involved in circadian clock control and photoperiodism as was similarly found in Populus balsamifera. Synthesis. We conclude that despite neutral evolutionary processes, phenotypic and genomic signals of adaptation to climate are responsible for differentiation, which in particular explain disparity between the well‐known coastal and interior varieties of Douglas‐fir. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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31. COST TU1404 benchmark on macroscopic modelling of concrete and concrete structures at early age: proof-of-concept stage
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Peter Joachim Heinrich, Elisabeth Stierschneider, Miguel Azenha, Giuseppe Sciumè, Stefano Dal Pont, Farid Benboudjema, José Luís Duarte Granja, Karolina Hájková, Vít Šmilauer, Emanuel Strieder, Agnieszka Jędrzejewska, Laurie Lacarrière, Vyacheslav Troyan, Dirk Schlicke, Arnaud Delaplace, Laboratoire de Mécanique et Technologie (LMT), École normale supérieure - Cachan (ENS Cachan)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Matériaux et Durabilité des constructions (LMDC), Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, University of Minho, Department of Civil Engineering, GéoMécanique, Laboratoire sols, solides, structures - risques [Grenoble] (3SR ), Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019]), Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP )-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019]), Lafarge Centre de Recherche [Lyon] (Lafarge LCR Lyon), Lafarge, University of Minho, Departement of civil Engineering, Czech Technical University in Prague (CTU), École normale supérieure - Cachan (ENS Cachan)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), Laboratoire sols, solides, structures - risques [Grenoble] (3SR), Université Joseph Fourier - Grenoble 1 (UJF)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP)-Institut National Polytechnique de Grenoble (INPG)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA)-Université Joseph Fourier - Grenoble 1 (UJF)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP)-Institut National Polytechnique de Grenoble (INPG)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA), Université Joseph Fourier - Grenoble 1 (UJF)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP)-Institut National Polytechnique de Grenoble (INPG)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT), University of Minho [Braga], Lafarge France [Groupe Holcim], Laboratoire de Mécanique et Technologie ( LMT ), École normale supérieure - Cachan ( ENS Cachan ) -Université Pierre et Marie Curie - Paris 6 ( UPMC ) -Centre National de la Recherche Scientifique ( CNRS ), Laboratoire Matériaux et Durabilité des constructions [Toulouse] ( LMDC ), Institut National des Sciences Appliquées - Toulouse ( INSA Toulouse ), Institut National des Sciences Appliquées ( INSA ) -Institut National des Sciences Appliquées ( INSA ) -Université Toulouse III - Paul Sabatier ( UPS ), Laboratoire sols, solides, structures - risques [Grenoble] ( 3S-R ), Université Joseph Fourier - Grenoble 1 ( UJF ) -Institut polytechnique de Grenoble - Grenoble Institute of Technology ( Grenoble INP ) -Institut National Polytechnique de Grenoble ( INPG ) -Centre National de la Recherche Scientifique ( CNRS ) -Université Grenoble Alpes ( UGA ), Czech Technical University in Prague ( CTU ), and Universidade do Minho
- Subjects
Numerical Modelling ,Structural level ,Computer science ,Benchmark program ,Macroscopic modelling ,0211 other engineering and technologies ,Cement ,Hydration ,020101 civil engineering ,02 engineering and technology ,0201 civil engineering ,021105 building & construction ,medicine ,[ SPI ] Engineering Sciences [physics] ,[ SPI.GCIV ] Engineering Sciences [physics]/Civil Engineering ,General Materials Science ,Adiabatic process ,ComputingMilieux_MISCELLANEOUS ,Civil and Structural Engineering ,Shrinkage ,Science & Technology ,business.industry ,Stiffness ,Building and Construction ,Structural engineering ,Mechanical behaviour ,Creep ,Proof of concept ,Numerical modelling ,Early-age concrete ,Benchmark (computing) ,Stage (hydrology) ,medicine.symptom ,Early age ,business ,[SPI.GCIV.EC]Engineering Sciences [physics]/Civil Engineering/Eco-conception - Abstract
Modelling of early-age behaviour of cement-based materials is still a challenging task. The challenge is implied by the extent of the knowledge on the subject which results in a variety of different models used for simulation of cement-based materials. That is why a numerical benchmark program has been launched within the COST Action TU1404 aiming at improvement and harmonisation of computational prediction of early-age behaviour of cement-based materials as well as its behaviour on structural level. This paper presents the result of the proof-of-concept stage of the benchmark. The goal of this stage of benchmark was to compare the performance of currently used models for simulation of early-age behaviour of concrete. The participants were requested to simulate thermo-chemomechanical behaviour of simple concrete elements covering adiabatic and real evolution of temperature, shrinkage, stiffness and stresses accounting for early-age creep. The tasks were formulated based on the experimental measurements. This stage of benchmark allowed to evaluate the influence of different phenomena occurring in early-age concrete on the behaviour of early-age concrete structures, define the discrepancies between experimental results and numerical simulations, as well as to indicate the weak points in the models., COST Action TU1404, Competitivity Factors Operational Programme– COMPETE, Polish Ministry of Science and Higher Education (BK-237/RB-6/2018)., info:eu-repo/semantics/publishedVersion
- Published
- 2018
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32. Einfluss unterschiedlicher Lastaufbringungsverfahren auf die Verschiebungsprognose von Verbunddübeln.
- Author
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Stierschneider, Elisabeth, Zeman, Oliver, and Bergmeister, Konrad
- Subjects
- *
PRODUCTIVE life span , *SERVICE life , *SERVICE design , *FATIGUE life , *FORECASTING , *EXTRAPOLATION , *WORK design - Abstract
Influence of different load application mechanisms on displacement extrapolation of bonded fasteners The influence of three different load application mechanisms for sustained load testing on bonded fasteners is investigated in this contribution. These vary in terms of constancy of applied load and their readjustment during testing. However, all of them are permissible for sustained load tests on bonded fasteners. Since the applied load is directly connected to the measured displacements, which are extrapolated up to the desired design working life of 50 years, the influence of different load application mechanisms on the displacement prediction is investigated. An extended design service life is currently gaining more importance and therefore the estimation of possible influences during testing on the extrapolation is relevant. Consequently, obtained knowledge in terms of the effect of different load application mechanisms on the prediction could be helpful for the development of testing guidelines for an extended design working life of bonded fasteners. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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- View/download PDF
33. The EVOLTREE repository centre. A central access point for reference material and data of forest genetic resources
- Author
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Michael Stierschneider, Stephan Gaubitzer, Schmidt Johanna, Otto Weichselbaum, Dieter Kopecky, Antoine Kremer, Silvia Fluch, Eva Maria Sehr, Austrian Institute of Technology [Vienna] (AIT), Biodiversité, Gènes et Communautés, Institut National de la Recherche Agronomique (INRA), Biodiversité, Gènes & Communautés (BioGeCo), and Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)
- Subjects
arbre forestier ,[SDV]Life Sciences [q-bio] ,forest tree ,biodiversité ,écologie végétale - Abstract
The EVOLTREE repository centre. A central access point for reference material and data of forest genetic resources
- Published
- 2016
34. Bewertung der Messunsicherheit bei der Durchführung von Dauerlastversuchen mit Verbunddübeln.
- Author
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Stierschneider, E., Schwenn, M., Zeman, O., and Bergmeister, K.
- Subjects
- *
FASTENERS , *TENSION loads , *PRODUCTIVE life span , *MONEY , *DISPLACEMENT (Mechanics) - Abstract
Sustained load tests are necessary for product‐qualification of bonded fasteners. The aim of these sustained load tests is the evaluation of the fastening under constant tension load. Based on these tests, an extrapolation of the displacement behaviour concerning the assumed working life of the fastening is carried out. Three different measurands are of interest for sustained load tests, which are the failure load during the tension tests, the constancy of the applied sustained load, as well as the displacement. Due to the fact that every measurand is tainted with measurement uncertainty, the present paper aimed to evaluate the dimension of the expected measurement uncertainty, since this influences in consequence the forecast of the displacement behaviour over the working life of a bonded fastener. The assessment is done in accordance with the „Guide to the expression of Uncertainty in Measurement" for both, the maximum expected measurement uncertainty in compliance with the accuracy requirements of the relevant testing standards and with values from practice for the purpose of comparison. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
35. Vorschriften für Brückenprüfungen: Aus gegebenem Anlass: Italien, Südtirol und Österreich im Vergleich.
- Author
-
Hilber, Raimund and Stierschneider, Elisabeth
- Abstract
Copyright of CE/Papers is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2019
- Full Text
- View/download PDF
36. The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release
- Author
-
Jean-Charles Leplé, Céline Noirot, Antoine Kremer, Christian Burban, Hadi Quesneville, Michael Stierschneider, Valérie Léger, Saneyoshi Ueno, Pascal Bento, Corinne Da Silva, François Buscot, Silvia Fluch, Jérôme Bartholomé, Christophe Plomion, Christophe Klopp, Jean-Marc Aury, François Ehrenmann, Isabelle Lesur, Lasse Feldhahn, Joelle Amselem, Céline Lalanne, Florent Murat, Mika T. Tarkka, Jérôme Salse, Caroline Belser, Sylvie Herrmann, Grégoire Le Provost, Biodiversité, Gènes & Communautés (BioGeCo), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB), INRA - Mathématiques et Informatique Appliquées (Unité MIAJ), Institut National de la Recherche Agronomique (INRA), Mathématiques et Informatique Appliquées du Génome à l'Environnement [Jouy-En-Josas] (MaIAGE), Génomique métabolique (UMR 8030), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Unité de recherche Amélioration, Génétique et Physiologie Forestières (AGPF), Génétique Diversité et Ecophysiologie des Céréales (GDEC), Institut National de la Recherche Agronomique (INRA)-Université Blaise Pascal - Clermont-Ferrand 2 (UBP), Unité de Biométrie et Intelligence Artificielle (UBIA), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Unité de Recherche Génomique Info (URGI), Austrian Institute of Technology [Vienna] (AIT), Department of Soil Ecology, Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ), German Centre for Integrative Biodiversity Research, Synthetic and Systems Biology Unit [Szeged], Biological Research Centre [Szeged] (BRC), Unité de Biométrie et Intelligence Artificielle (ancêtre de MIAT) (UBIA), Biodiversité, Gènes et Communautés, Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE), Unité de recherche Amélioration, Génétique et Physiologie Forestières (UAGPF), Université Blaise Pascal - Clermont-Ferrand 2 (UBP)-Institut National de la Recherche Agronomique (INRA), Helmholtz Centre for Environmental Research (UFZ), Génétique Diversité et Ecophysiologie des Céréales - Clermont Auvergne (GDEC), and Institut National de la Recherche Agronomique (INRA)-Université Clermont Auvergne (UCA)
- Subjects
0106 biological sciences ,[SDV]Life Sciences [q-bio] ,Phénotype ,Sequence assembly ,UniGene ,comparative genomics ,01 natural sciences ,Genome ,F30 - Génétique et amélioration des plantes ,Gene Expression Regulation, Plant ,bud phenology ,K01 - Foresterie - Considérations générales ,genomic features [EN] ,ComputingMilieux_MISCELLANEOUS ,Genetics ,0303 health sciences ,biology ,bourgeon ,Chromosome Mapping ,Plant Dormancy ,Adaptation, Physiological ,Quercus petraea ,quercus ,Quercus robur ,Phénologie ,Génotype ,Genome, Plant ,Research Article ,Biotechnology ,expression des gènes ,Genome evolution ,Genetic Speciation ,education ,fagaceae ,de novo assembly ,Séquence d'ARN ,03 medical and health sciences ,oak ,séquençage ,Gene ,030304 developmental biology ,transcriptome ,RNA-seq ,Comparative genomics ,Base Sequence ,Transcription génique ,Sequence Analysis, RNA ,génomique comparative ,15. Life on land ,biology.organism_classification ,dormance ,Evolutionary biology ,010606 plant biology & botany - Abstract
Background Many northern-hemisphere forests are dominated by oaks. These species extend over diverse environmental conditions and are thus interesting models for studies of plant adaptation and speciation. The genomic toolbox is an important asset for exploring the functional variation associated with natural selection. Results The assembly of previously available and newly developed long and short sequence reads for two sympatric oak species, Quercus robur and Quercus petraea, generated a comprehensive catalog of transcripts for oak. The functional annotation of 91 k contigs demonstrated the presence of a large proportion of plant genes in this unigene set. Comparisons with SwissProt accessions and five plant gene models revealed orthologous relationships, making it possible to decipher the evolution of the oak genome. In particular, it was possible to align 9.5 thousand oak coding sequences with the equivalent sequences on peach chromosomes. Finally, RNA-seq data shed new light on the gene networks underlying vegetative bud dormancy release, a key stage in development allowing plants to adapt their phenology to the environment. Conclusion In addition to providing a vast array of expressed genes, this study generated essential information about oak genome evolution and the regulation of genes associated with vegetative bud phenology, an important adaptive traits in trees. This resource contributes to the annotation of the oak genome sequence and will provide support for forward genetics approaches aiming to link genotypes with adaptive phenotypes. Electronic supplementary material The online version of this article (doi:10.1186/s12864-015-1331-9) contains supplementary material, which is available to authorized users.
- Published
- 2015
- Full Text
- View/download PDF
37. Influence of temperature and measurement uncertainty in sustained load testing on bonded fasteners.
- Author
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Stierschneider, Elisabeth, Schwenn, Michael, Tamparopoulos, Alexios E., Zeman, Oliver, and Bergmeister, Konrad
- Subjects
- *
MECHANICAL loads , *TEMPERATURE effect , *CHEMICAL bonds , *POWER law (Mathematics) , *UNCERTAINTY - Abstract
Abstract: Sustained load testing on bonded fasteners is used for the long‐term forecast of the fastener displacement behaviour. The application of the Findley law as extrapolation method is an intensively discussed topic. This method uses a power law to forecast the long‐term behaviour. As a result, also the measurement uncertainty from measured displacements and temperature effects are extrapolated over time. Currently sustained load tests for product qualification of bonded fasteners are regulated in the European Assessment Document EAD 330499, in which certain measurement intervals and the required accuracy are defined. Recent improvements in data acquisition lead to possible reductions of measurement intervals in order to make long‐term forecasts more precise. Therefore, measurement uncertainty of the displacement measurement gains importance. Considering this issue, the influence of the measurement device itself, the location of displacement measurement in the test setup and temperature changes are discussed within this contribution. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
38. FE-Study on the Effect of Gradient Concrete on Early Constraint and Crack Risk.
- Author
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Strieder, Emanuel, Hilber, Raimund, Stierschneider, Elisabeth, and Bergmeister, Konrad
- Subjects
CONSTRAINT algorithms ,SURFACE cracks ,HYDRATION - Abstract
In long-lasting mass concrete structures the desired material properties of the concrete mix to realize a durable concrete and a concrete surface without cracks conflict with each other. The requirement of concrete with high durability leads to high thermal energy release and therefore, as another consequence, to high crack risk. Crack reduction is achieved by use of concrete with low hydration energy, which on the other hand leads to a decrease in concrete durability. Besides from optimized base materials and concrete technology, a gradient material distribution in the cross-section could reduce the problem since durable concrete is needed near the surface and the requirement of low-hydration energy is located in the center of the member. A simplified model is used to investigate the possible effect of a gradient concrete material distribution in mass concrete structures on crack reduction. The results of the analysis show that gradient concrete might contribute to lowering the constraint stresses and therefore the crack risk during concrete hardening. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
39. Evaluierung der zentrischen Resttragfähigkeit von randnahen Verbundankern nach erfolgtem Betonkantenbruch.
- Author
-
Stierschneider, Elisabeth, Zeman, Oliver, Lachinger, Stefan, and Bergmeister, Konrad
- Abstract
Das dem derzeitigen Stand der Technik entsprechende Bemessungskonzept für Verankerungen führt bei randnahen Mehrfachbefestigungen unter Querbelastung und in weiterer Folge auch bei einer kombinierten Beanspruchung zu teilweise konservativen Ergebnissen. Aus bereits durchgeführten Untersuchungen zur Verbesserung des vorhandenen Bemessungskonzepts für randnahe Mehrfachbefestigungen unter Schrägzugbelastung geht hervor, dass solche Verankerungen nach dem Versagen der ersten Ankerreihe durch Betonkantenbruch noch Resthaltekräfte aufweisen, weshalb eine Berücksichtigung dieser zur Steigerung der Effizienz der Bemessung beitragen kann. Da die quantitative Beschaffenheit dieser Resttragfähigkeit jedoch noch weitgehend unerforscht ist, wird in diesem Beitrag auf Basis experimenteller Untersuchungen aufgezeigt, in welcher Größenordnung sich diese Resthaltekräfte bewegen. Hierzu wird eine randnahe Einzelbefestigung des Verbunddübeltyps zunächst unter reiner Querlast in Richtung des freien Bauteilrandes bis zum Eintritt des Betonkantenbruchs belastet und anschließend die zentrische Resttragfähigkeit bestimmt. Evaluation of the residual capacity in tension on bonded anchors close to the edge after concrete edge failure The state of the art design concept for anchorages in concrete leads to partly conservative results especially for fastenings close to the edge under shear load or subsequently under inclined load. Former investigations concerning the improvement of the actual design concept for anchorages close to the edge under inclined load show that such fastening situations have a residual capacity, although the first anchor row has already failed under shear load due to concrete edge failure. Therefore, the provision of this residual capacity can increase the performance of the design concept. Due to the lack in the quantitative range of the residual capacity, the scale of these forces was identified based on experimental tests within this article. Hence single bonded anchors close to the edge are loaded in a first step with a shear load towards the free edge until the concrete edge fails and afterwards the centric residual capacity is determined. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
40. The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release.
- Author
-
Lesur, Isabelle, Le Provost, Grégoire, Bento, Pascal, Da Silva, Corinne, Leplé, Jean-Charles, Murat, Florent, Saneyoshi Ueno, Bartholomé, Jerôme, Lalanne, Céline, Ehrenmann, François, Noirot, Céline, Burban, Christian, Léger, Valérie, Amselem, Joelle, Belser, Caroline, Quesneville, Hadi, Stierschneider, Michael, Fluch, Silvia, Feldhahn, Lasse, and Tarkka, Mika
- Subjects
GENE expression in plants ,OAK ,FAGACEAE ,PLANT adaptation ,GENETIC speciation ,RNA sequencing - Abstract
Background: Many northern-hemisphere forests are dominated by oaks. These species extend over diverse environmental conditions and are thus interesting models for studies of plant adaptation and speciation. The genomic toolbox is an important asset for exploring the functional variation associated with natural selection. Results: The assembly of previously available and newly developed long and short sequence reads for two sympatric oak species, Quercus robur and Quercus petraea, generated a comprehensive catalog of transcripts for oak. The functional annotation of 91 k contigs demonstrated the presence of a large proportion of plant genes in this unigene set. Comparisons with SwissProt accessions and five plant gene models revealed orthologous relationships, making it possible to decipher the evolution of the oak genome. In particular, it was possible to align 9.5 thousand oak coding sequences with the equivalent sequences on peach chromosomes. Finally, RNA-seq data shed new light on the gene networks underlying vegetative bud dormancy release, a key stage in development allowing plants to adapt their phenology to the environment. Conclusion: In addition to providing a vast array of expressed genes, this study generated essential information about oak genome evolution and the regulation of genes associated with vegetative bud phenology, an important adaptive traits in trees. This resource contributes to the annotation of the oak genome sequence and will provide support for forward genetics approaches aiming to link genotypes with adaptive phenotypes. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
41. Evaluating a Targeted Cancer Therapy Approach Mediated by RNA trans -Splicing In Vitro and in a Xenograft Model for Epidermolysis Bullosa-Associated Skin Cancer.
- Author
-
Woess, Katharina, Sun, Yuchen, Morio, Hanae, Stierschneider, Anna, Kaufmann, Anna, Hainzl, Stefan, Trattner, Lisa, Kocher, Thomas, Tockner, Birgit, Leb-Reichl, Victoria, Steiner, Markus, Brachtl, Gabriele, South, Andrew P., Bauer, Johann W., Reichelt, Julia, Furihata, Tomomi, Wally, Verena, Koller, Ulrich, Piñón Hofbauer, Josefina, and Guttmann-Gruber, Christina
- Subjects
SKIN cancer ,CANCER treatment ,RNA ,CANCER genes ,SKIN diseases ,SPLICEOSOMES ,IRINOTECAN - Abstract
Conventional anti-cancer therapies based on chemo- and/or radiotherapy represent highly effective means to kill cancer cells but lack tumor specificity and, therefore, result in a wide range of iatrogenic effects. A promising approach to overcome this obstacle is spliceosome-mediated RNA trans-splicing (SMaRT), which can be leveraged to target tumor cells while leaving normal cells unharmed. Notably, a previously established RNA trans-splicing molecule (RTM44) showed efficacy and specificity in exchanging the coding sequence of a cancer target gene (Ct-SLCO1B3) with the suicide gene HSV1-thymidine kinase in a colorectal cancer model, thereby rendering tumor cells sensitive to the prodrug ganciclovir (GCV). In the present work, we expand the application of this approach, using the same RTM44 in aggressive skin cancer arising in the rare genetic skin disease recessive dystrophic epidermolysis bullosa (RDEB). Stable expression of RTM44, but not a splicing-deficient control (NC), in RDEB-SCC cells resulted in expression of the expected fusion product at the mRNA and protein level. Importantly, systemic GCV treatment of mice bearing RTM44-expressing cancer cells resulted in a significant reduction in tumor volume and weight compared with controls. Thus, our results demonstrate the applicability of RTM44-mediated targeting of the cancer gene Ct-SLCO1B3 in a different malignancy. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
42. Light-Inducible Spatio-Temporal Control of TLR4 and NF-κB-Gluc Reporter in Human Pancreatic Cell Line.
- Author
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Stierschneider, Anna, Grünstäudl, Petra, Colleselli, Katrin, Atzler, Josef, Klein, Christian T., Hundsberger, Harald, and Wiesner, Christoph
- Subjects
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TOLL-like receptors , *SPHEROIDAL state , *CELL lines , *CHIMERIC proteins , *OPTOGENETICS , *NF-kappa B , *CELL migration - Abstract
Augmented Toll-like receptor 4 (TLR4) expression was found in nearly 70% of patients with pancreatic adenocarcinoma, which is correlated with increased tumorigenesis and progression. In this study, we engineered a new light-oxygen-voltage-sensing (LOV) domain-based optogenetic cell line (opto-TLR4 PANC-1) that enables time-resolved activation of the NF-κB and extracellular-signal regulated kinases (ERK)1/2 signalling pathway upon blue light-sensitive homodimerisation of the TLR4-LOV fusion protein. Continuous stimulation with light indicated strong p65 and ERK1/2 phosphorylation even after 24 h, whereas brief light exposure peaked at 8 h and reached the ground level 24 h post-illumination. The cell line further allows a voltage-dependent TLR4 activation, which can be continuously monitored, turned on by light or off in the dark. Using this cell line, we performed different phenotypic cell-based assays with 2D and 3D cultures, with the aim of controlling cellular activity with spatial and temporal precision. Light exposure enhanced cell attachment, the formation and extension of invadopodia, and cell migration in 3D spheroid cultures, but no significant changes in proliferation or viability could be detected. We conclude that the opto-TLR4 PANC-1 cell line is an ideal tool for investigating the underlying molecular mechanisms of TLR4, thereby providing strategies for new therapeutic options. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
43. Concentration-Dependent Pro- and Antitumor Activities of Quercetin in Human Melanoma Spheroids: Comparative Analysis of 2D and 3D Cell Culture Models.
- Author
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Hundsberger, Harald, Stierschneider, Anna, Sarne, Victoria, Ripper, Doris, Schimon, Jasmin, Weitzenböck, Hans Peter, Schild, Dominik, Jacobi, Nico, Eger, Andreas, Atzler, Josef, Klein, Christian T., Wiesner, Christoph, Botta, Bruno, Ingallina, Cinzia, Calcaterra, Andrea, and Quaglio, Deborah
- Subjects
QUERCETIN ,CELL culture ,MELANOMA ,COMPARATIVE studies ,GENES - Abstract
Quercetin, a dietary flavonoid found in fruits and vegetables, has been described as a substance with many anti-cancer properties in a variety of preclinical investigations. In the present study, we demonstrate that 2D and 3D melanoma models exhibit not only different sensitivities to quercetin, but also opposite, cancer-promoting effects when metastatic melanoma spheroids are treated with quercetin. Higher concentrations of quercetin reduce melanoma growth in three tested cell lines, whereas low concentrations induce the opposite effect in metastatic melanoma spheroids but not in the non-metastatic cell line. High (>12.5 µM) or low (<6.3 µM) quercetin concentrations decrease or enhance cell viability, spheroid size, and cell proliferation, respectively. Additionally, melanoma cells cultivated in 2D already show significant caspase 3 activity at very low concentrations (>0.4 µM), whereas in 3D spheroids apoptotic cells, caspase 3 activity can only be detected in concentrations ≥12.5 µM. Further, we show that the tumor promoting or repressing effect in the 3D metastatic melanoma spheroids are likely to be elicited by a precisely controlled regulation of Nrf2/ARE-mediated cytoprotective genes, as well as ERK and NF-κB phosphorylation. According to the results obtained here, further studies are needed to better characterize the mechanisms of action underlying the pro- and anti-carcinogenic effects of quercetin on human melanomas. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
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