29 results on '"Silva del Rio, N."'
Search Results
2. Implications of supplementing mid-lactation multiparous Holstein cows fed high by-product low-forage diets with rumen-protected methionine and lysine in a commercial dairy
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Abreu, M.B., Valldecabres, A., Marcondes, M.I., Correa, A.F., Lobos, N.E., Peterson, C.B., Atwell, D., and Silva-del-Rio, N.
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- 2023
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3. Characterization of controlled trials on probiotic supplementation to dairy calves: A scoping review
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Branco-Lopes, R., Bernal-Córdoba, C., Valldecabres, A., Winder, C., Canozzi, M.E., and Silva-del-Río, N.
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- 2023
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4. Total mixed ration recipe preparation and feeding times for high-milk-yield cows on California dairies
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Trillo, Y., Lago, A., and Silva-del-Río, N.
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- 2017
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5. Colostrum immunoglobulin G concentration of multiparous Jersey cows at first and second milking is associated with parity, colostrum yield, and time of first milking, and can be estimated with Brix refractometry
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Silva-del-Río, N., Rolle, D., García-Muñoz, A., Rodríguez-Jiménez, S., Valldecabres, A., Lago, A., and Pandey, P.
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- 2017
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6. Fresh-cow handling practices and methods for identification of health disorders on 45 dairy farms in California
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Espadamala, A., Pallarés, P., Lago, A., and Silva-del-Río, N.
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- 2016
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7. Effects of subcutaneous calcium administration at calving on mineral status, health, and production of Holstein cows
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Amanlou, H., Akbari, A.P., Farsuni, N.E., and Silva-del-Río, N.
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- 2016
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8. Deviation from the formulated target weight of ingredients loaded into high milk yield cow recipes on California dairies
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Trillo, Y., Lago, A., and Silva-del-Río, N.
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- 2016
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9. Evaluation of two methodologies for lameness detection in dairy cows based on postural and gait abnormalities observed during milking and while restrained at headlock stanchions
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García-Muñoz, A., Vidal, G., Singh, N., and Silva-del-Río, N.
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- 2016
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10. A survey of silage management practices on California dairies
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Heguy, J.M., Meyer, D., and Silva-del-Río, N.
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- 2016
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11. Blood calcium dynamics after prophylactic treatment of subclinical hypocalcemia with oral or intravenous calcium
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Blanc, C.D., Van der List, M., Aly, S.S., Rossow, H.A., and Silva-del-Río, N.
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- 2014
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12. Factors affecting pregnancy loss for single and twin pregnancies in a high-producing dairy herd
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Silva-del-Río, N., Colloton, J.D., and Fricke, P.M.
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- 2009
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13. Effects of twin pregnancy and dry period feeding strategy on milk production, energy balance, and metabolic profiles in dairy cows
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Silva-del-Rio, N., Fricke, P.M., and Grummer, R.R.
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Cattle -- Physiological aspects ,Cattle -- Food and nutrition ,Pregnancy -- Research ,Animal feeding and feeds -- Composition ,Zoology and wildlife conservation - Abstract
The present study evaluated the interaction of pregnancy type [PT; single (S) vs. twin (T)] and dry period feeding management [D; close-up (CU) diet ([NE.sub.1] = 1.54 Mcal/kg of DM)] throughout the entire dry period (8W) vs. far-off (FO) diet ([NE.sub.1] = 1.32 Meal/kg of DM) from 60 to 21 d before expected calving date (ECD) followed by CU diet until calving (3W). Treatments were arranged in a 2 x 2 factorial with a randomized block design with primiparous (n = 8) and multiparous (n = 39) Holstein cows. We hypothesized that increasing the duration of feeding a CU diet would improve metabolic status and lactation performance for cows with T, but not for cows with S. All cows were fed similarly in late lactation (90 to 60 d before ECD; diet [NE.sub.1] = 1.58 Mcal/kg of DM) and in early lactation (calving to 105 DIM; diet [NE.sub.1] = 1.71 Meal// kg of DM). Prepartum DMI as percentage of BW did not differ (P > 0.10) with D but tended to be greater (P = 0.10) for cows with S than with T. Cows with T tended to have greater (P = 0.08) BW than cows with S, but conceptus-free BW was less (P = 0.001) for cows with T than for cows with S. No differences (P > 0.10) were detected in prepartum BCS or BCS change with PT or D. Energy balance (EB) was greater for cows with S than with T (P < 0.001) and for cows fed 8W vs. 3W (P = 0.01). Cows with T had greater (P < 0.001) NEFA and a tendency for greater liver triglycerides (TG; P = 0.07) and plasma [beta]-hydroxybutyrate (BHBA; P = 0.06) than cows with S. Prepartum cows fed 3W had greater (P = 0.01) liver TG and greater (P = 0.02) plasma NEFA, but less (P = 0.02) plasma BHBA than cows fed 8W. Plasma glucose (P < 0.004) and liver glycogen (P = 0.02) were less for cows with T but were not affected (P > 0.10) by D. Postpartum, there was no effect (P > 0.1) of PT or D on mean DMI as percentage of BW, BW, and BCS, but there was an interaction (P = 0.02) of PT x D for mean BCS. Cows that calved T were in a more positive (P = 0.004) EB than cows that calved S. Milk production was 5.2 kg/d greater (P = 0.04) for cows fed 8W; however, they were in less (P = 0.01) EB than cows that received 3W. Postpartum cows that calved T had decreased concentrations of plasma NEFA (P = 0.02) and liver TG (P = 0.04) but greater concentrations of plasma glucose (P = 0.03) than cows that calved S. Plasma BHBA (P = 0.07) and NEFA tended (P = 0.06) to be greater for cows that received 8W than 3W. Neither PT nor D affected (P > 0.1) plasma glucose and liver glycogen. There was a tendency for an interaction of PT x D for plasma NEFA and liver TG. In contrast to our hypothesis, response to D was independent of PT. Based on milk production data from the present experiment, 8W is a more desirable feeding strategy than 3W. Key words: close-up diet, dairy cow, metabolic status, twinning doi:10.2527/jas.2009-2206
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- 2010
14. Observed frequency of monozygotic twinning in Holstein dairy cattle
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Silva del Río, N., Kirkpatrick, B.W., and Fricke, P.M.
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- 2006
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15. Effects of Increasing Milking Frequency During the Last 28 Days of Gestation on Milk Production, Dry Matter Intake, and Energy Balance in Dairy Cows.
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Rastani, R. R., Silva del Rio, N., Gressley, T. F., Dahl, G. E., and Grummer, R. R.
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HOLSTEIN-Friesian cattle , *DAIRY cattle , *MILKING , *MILK yield , *PREGNANCY in animals , *CATTLE reproduction , *ANIMAL health - Abstract
Forty-eight Holstein cows were used in a randomized block design to evaluate different dry period lengths and prepartum milking frequencies (MF) on subsequent milk production, milk composition, solids-corrected milk production, dry matter intake (DMI), and energy balance. Lactating cows, milked 2 times/d, began a 7-d covariate period 35 d prior to the expected calving date. Cows were milked 0 times/d (0x), 1 time/d (1x), and 4 times/d (4x) for the last 28 d of gestation. If milk production decreased to less than 0.5 kg/milking or 1 kg/d, milking via machine ceased; however, teat stimulation continued 1 or 4 times/ d according to the treatment assignment. All cows were milked 2 times/d postpartum (wk 1 to 10). Prepartum DMI tended to be greater for lx and 4x compared with 0x. Prepartum, cows milked lx produced 17% less milk than cows milked 4x (5.9 and 7.1 kg/d, respectively). There were no differences in prepartum and postpartum body condition scores, body weights, and DMI. Postpartum milk production by cows following their third or greater gestation was greater for 0x and 4x compared with 1x. Postpartum milk production by cows following their second gestation was significantly decreased with increased MF (0x vs. 1x and 4x). Regardless of parity, postpartum solids-corrected milk was greater for 0x compared with 1x and 4x. Postpartum fat yield was greater for 0x vs. 4x, with lx being intermediate. Postpartum protein yield was greater for 0x vs. 4x, whereas 0x tended to have greater protein yield than lx. Postpartum energy balance was greater for 1x and 4x relative to 0x. Continuous milking (1x and 4x) resulted in a loss of milk production in the subsequent lactation for cows following their second gestation; however, for cows following their third or greater gestation, increasing the MF from 1x to 4x in the last 28 d of gestation alleviated the loss in milk production. [ABSTRACT FROM AUTHOR]
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- 2007
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16. Mineral concentrations in diets, water, and milk and their value in estimating on-farm excretion of manure minerals in lactating dairy cows.
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Castillo, A. R., St-Pierre, N. R., Silva Del Rio, N., and Weiss, W. P.
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DAIRY cattle , *LACTATION , *DRINKING water , *DAIRY farming research , *MANURES - Abstract
Thirty-nine commercial dairies in Merced County, California were enrolled in the present study to (1) compare lactating cow mineral intakes (via drinking water and total mixed ration) to the National Research Council (NRC) requirements, (2) evaluate the association between dietary concentrations of minerals with and without drinking water and adjusted for mineral concentrations in milk, and (3) compare 4 different methods to estimate excretion of minerals using either assays or estimations of milk mineral outputs and total daily mineral intake per cow with or without minerals coming from drinking water. Dairies were selected to represent a range of herd milk yields and a range of water mineral contents. Samples of total mixed ration, drinking water, and bulk tank milk were taken on 2 different days, 3 to 7 d apart in each farm. Across-farm medians and percentile distributions were used to analyze results. The herd median milk yield interquartile ranged (10th to 90th percentile) from less than 25 to more than 39 kg/d and the concentration of total solids in water interquartile ranged from less than 200 to more than 1,490 mg/L. Including drinking water minerals in the diets increased dietary concentrations by <4% for all minerals except for Na and Cl, which increased by 9.3 and 6.5%, respectively. Concentrations of P and K in milk were essentially the same as the NRC value to estimate lactation requirements. However, NRC milk values of Ca, Cl, and Zn were 10 to 20% greater than dairy farm values; and Na, Cu, Fe, and Mn were no less than 36% below NRC values. Estimated excretion of minerals via manure varied substantially across farms. Farms in the 10th percentile did have 2 to 3 times less estimated mineral excretions than those in the 90th percentile (depending on the mineral). Although including water minerals increased excretion of most minerals, the actual median effect of Ca, Mg, S, Cu, Fe, and Mn was less than 5%, and about 8% for Na and Cl. Replacing assayed concentrations of minerals in milk with NRC constants resulted in reduced estimated excretion of Ca, Na, Cu, Fe, and Zn, but median differences were <5% except for Na which was 7.5%. Results indicate that not including mineral intake via drinking water and not using assayed concentrations of milk minerals lead to errors in estimation manure excretion of minerals (e.g., Ca, Na, Cl, and S). [ABSTRACT FROM AUTHOR]
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- 2013
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17. Integration of statistical inferences and machine learning algorithms for prediction of metritis cure in dairy cows.
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de Oliveira, E.B., Ferreira, F.C., Galvão, K.N., Youn, J., Tagkopoulos, I., Silva-del-Rio, N., Pereira, R.V.V., Machado, V.S., and Lima, F.S.
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MACHINE learning , *INFERENTIAL statistics , *DAIRY cattle , *MULTIVARIABLE testing , *MILK yield , *SUBCUTANEOUS injections - Abstract
The study's objectives were to identify cow-level and environmental factors associated with metritis cure to predict metritis cure using traditional statistics and machine learning algorithms. The data set used was from a previous study comparing the efficacy of different therapies and self-cure for metritis. Metritis was defined as fetid, watery, reddish-brownish discharge, with or without fever. Cure was defined as an absence of metritis signs 12 d after diagnosis. Cows were randomly allocated to receive a subcutaneous injection of 6.6 mg/kg of ceftiofur crystalline-free acid (Excede, Zoetis) at the day of diagnosis and 3 d later (n = 275); and no treatment at the time of metritis diagnosis (n = 275). The variables days in milk (DIM) at metritis diagnosis, treatment, season of the metritis diagnosis, month of metritis diagnostic, number of lactation, parity, calving score, dystocia, retained fetal membranes, body condition score at d 5 postpartum, vulvovaginal laceration score, the rectal temperature at the metritis diagnosis, fever at diagnosis, milk production from the day before to metritis diagnosis, and milk production slope up to 5, 7, and 9 DIM were offered to univariate logistic regression. Variables included in the multivariable logistic regression model were selected from the univariate analysis according to P -value. Variables were offered to the model to assess the association between these factors and metritis cure. Additionally, the univariate logistic regression variables were offered to a recursive feature elimination to find the optimal subset of features for a machine learning algorithms analysis. Cows without vulvovaginal laceration had 1.91 higher odds of curing of metritis than cows with vulvovaginal laceration. Cows that developed metritis at >7 DIM had 2.09 higher odds of being cured than cows that developed metritis at ≤7 DIM. For rectal temperature, each degree Celsius above 39.4°C led to lower odds to be cured than cows with rectal temperature ≤39.4°C. Furthermore, milk production slope and milk production difference from the day before to the metritis diagnosis were essential variables to predict metritis cure. Cows that had reduced milk production from the day before to the metritis diagnosis had lower odds to be cured than cows with moderate milk production increase. The results from the multivariable logistic regression and receiver operating characteristic analysis indicated that cows developing metritis at >7 DIM, with increase in milk production, and with a rectal temperature ≤39.40°C had increased likelihood of cure of metritis with an accuracy of 75%. The machine learning analysis showed that in addition to these variables, calving-related disorders, season, and month of metritis event were needed to predict whether the cow will cure or not from metritis with an accuracy ≥70% and F1 score (harmonic mean between precision and recall) ≥0.78. Although machine learning algorithms are acknowledged as powerful tools for predictive classification, the current study was unable to replicate its potential benefits. More research is needed to optimize predictive models of metritis cure. [ABSTRACT FROM AUTHOR]
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- 2021
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18. Survey of dairy housing and manure management practices in California.
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Meyer, D., Price, P. L., Rossow, H. A., Silva-del-Rio, N., Karle, B. M., Robinson, P. H., Depeters, E. J., and Fadel, J. G.
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CATTLE housing , *MANURES , *FARM management , *MILKING , *AGRICULTURAL technology , *DAIRY industry , *SURVEYS - Abstract
In 2007, a descriptive survey was mailed to all dairies in Glenn (G) and Tulare (T) Counties to identify current and future opportunities of manure management practices on California dairies. The purpose was to provide baseline information for development of outreach curriculum and a decision support tool to quantify potential benefits of various N management options on dairy farms. Such baseline information is valuable to staff regulating dairy facilities (e.g., San Joaquin Valley Unified Air Pollution Control District and Central Valley Regional Water Quality Control Board), dairy trade association representatives, and technology vendors. Response rates for each county were similar at 29.7% (n = 19; G) and 26.7% (n = 88; T). Mean milking herd size averaged 570 (range 50 to 3,000) cows in G and 1,800 (range 196 to 9,286) cows in T. Survey data are reported by location due to differences between counties in herd size, housing facilities, and climate. Freestalls are common housing facilities (63.2%, G; 38.6%, T) and separated solids and corral scrapings are commonly used as bedding in freestalls (81.8% G and 79.4% T). The most common methods of manure collection were flushing and scraping (18.8%, G; 44.7%, T), only flushing (43.8%, G; 34.1%, T), or only scraping daily or less frequently than daily (37.5%, G; 20.0%, T). Most dairy farms in G (63.2%) and T (70.5%) used some method of separating solids from liquids. However, mechanical separation systems alone were used by 5.3% G and 11.4% T of dairy farms. Storage or treatment ponds were found on 95.9% of dairies. Respondents identified existing manure management practices and did not indicate any new technologies were in use or being considered for manure management. Survey results were used to describe the 2 predominant manure management pathways of manure collection, storage, treatment, and utilization. Survey results will be used to develop and disseminate targeted information on manure treatment technologies, and on-farm evaluation of implemented technologies related to anaerobic digesters, solid liquid separation, and pond additives. [ABSTRACT FROM AUTHOR]
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- 2011
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19. Relative availability of five inorganic magnesium sources in non-pregnant non-lactating Holstein cows.
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Silva-Del-Rio N, Solórzano LC, Lago A, Lobo RR, Goff JP, Weiss WP, and Tempelman RJ
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Inorganic sources of Mg are commonly used in dairy cow diets, but their availability varies significantly. This study assessed the relative availability of 4 commonly used inorganic Mg sources and a novel alkalinizing proprietary mineral blend [PMB; Multesium (GLC Minerals, LLC, Green Bay, WI, USA)]. The study was a duplicated 6 × 6 Latin square, with 12 nonlactating, non-pregnant Holstein dairy cows assigned to a square based on BW and parity. Cows were fed 90% of their voluntary DMI (diet contained 0.21% Mg). Each experimental period lasted 7 d. On d 2 of each period, urinary catheters were fitted. Total urine collection started on d 3 for 48 h with samples collected and measured every 12 h. On d 4, 30 g of Mg were administered as boluses with gelatin capsules: negative control (one empty capsule), magnesium oxide (MgO), magnesium sulfate (MgSO
4 ), calcium magnesium hydroxide [CaMg(OH)4 ], calcium magnesium carbonate [CaMg(CO3 )2 ], and PMB [a blend of Ca and Mg sources that includes CaMg(CO3 )2 , CaMg(OH)4 , and MgO]. Blood samples were collected at 0, 1, 2, 3, 12, and 24 h after treatment administration on d 4 of each treatment period. Urine and blood samples were analyzed for Mg and Ca concentration. Statistical analyses were conducted with PROC GLIMMIX including treatment, time, period, square, treatment × time, treatment × period, and time × period as fixed effects, and cow nested within square as a random effect in the model. Urinary Mg excretion for 4 of the Mg sources studied [PMB, MgO, CaMg(OH)4 , and MgSO4 ] increased significantly, representing an increase of at least 40.8% relative to control. The supplementation of CaMg(CO3 )2 did not significantly increase relative to control. There were no significant changes in blood Mg concentration with treatment; but, a significant treatment × time effect was observed. Calcium-rich sources [PMB, CaMg(OH)4 , CaMg(CO3 )2 ] had lower blood Mg concentrations at 12 or 24 h after treatment than control and CaMg(CO3 )2 . Based on urinary Mg excretion 24 h after treatment, 4 of the Mg sources evaluated (including PMB) showed a similar availability, however, the availability of the commercial CaMg(CO3 )2 source included in our study was similar to the negative control (no-supplemented cows)., (© 2024, The Authors. Published by Elsevier Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)- Published
- 2024
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20. WGS of intrauterine E. coli from cows with early postpartum uterine infection reveals a non-uterine specific genotype and virulence factors.
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Garzon A, Basbas C, Schlesener C, Silva-Del-Rio N, Karle BM, Lima FS, Weimer BC, and Pereira RV
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- Cattle, Animals, Female, Cross-Sectional Studies, Whole Genome Sequencing, Uterine Diseases microbiology, Uterine Diseases veterinary, Uterine Diseases genetics, Genome, Bacterial, Uterus microbiology, Anti-Bacterial Agents pharmacology, Genome-Wide Association Study, Drug Resistance, Bacterial genetics, Virulence Factors genetics, Escherichia coli Infections veterinary, Escherichia coli Infections microbiology, Escherichia coli genetics, Escherichia coli pathogenicity, Escherichia coli isolation & purification, Escherichia coli classification, Genotype, Cattle Diseases microbiology, Postpartum Period
- Abstract
Escherichia coli has been attributed to playing a major role in a cascade of events that affect the prevalence and severity of uterine disease in cattle. The objectives of this project were to (i) define the association between the prevalence of specific antimicrobial resistance and virulence factor genes in E. coli with the clinical status related to uterine infection, (ii) identify the genetic relationship between E. coli isolates from cows with diarrhea, with mastitis, and with and without metritis, and (iii) determine the association between the phenotypic and genotypic antimicrobial resistance identified on the E. coli isolated from postpartum cattle. Bacterial isolates ( n = 148) were obtained from a larger cross-sectional study. Cows were categorized into one of three clinical groups before enrollment: metritis, cows with purulent discharge, and control cows. For genomic comparison, public genomes ( n = 130) from cows with diarrhea, mastitis, and metritis were included in a genome-wide association study, to evaluate differences between the drug classes or the virulence factor category among clinical groups. A distinct E. coli genotype associated with metritis could not be identified. Instead, a high genetic diversity among the isolates from uterine sources was present. A virulence factor previously associated with metritis ( fim H) using PCR was not associated with metritis. There was moderate accuracy for whole-genome sequencing to predict phenotypic resistance, which varied depending on the antimicrobial tested. Findings from this study contradict the traditional pathotype classification and the unique intrauterine E. coli genotype associated with metritis in dairy cows.IMPORTANCEMetritis is a common infectious disease in dairy cattle and the second most common reason for treating a cow with antimicrobials. The pathophysiology of the disease is complex and is not completely understood. Specific endometrial pathogenic Escherichia coli have been reported to be adapted to the endometrium and sometimes lead to uterine disease. Unfortunately, the specific genomic details of the endometrial-adapted isolates have not been investigated using enough genomes to represent the genomic diversity of this organism to identify specific virulence genes that are consistently associated with disease development and severity. Results from this study provide key microbial ecological advances by elucidating and challenging accepted concepts for the role of Intrauterine E. coli in metritis in dairy cattle, especially contradicting the existence of a unique intrauterine E. coli genotype associated with metritis in dairy cows, which was not found in our study., Competing Interests: The authors declare no conflict of interest.
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- 2024
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21. Antimicrobial resistance of Escherichia coli from dairy farms participating in an antimicrobial stewardship educational program for farm employees.
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Garzon A, Portillo R, Habing G, Silva-Del-Rio N, Karle BM, and Pereira RV
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- Humans, Adult, Female, Animals, Cattle, Farms, Escherichia coli, Drug Resistance, Bacterial, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents therapeutic use, Antimicrobial Stewardship
- Abstract
Antimicrobial use in food-producing animals is under increasing scrutiny due to the potential effect on the selection of antimicrobial-resistant bacteria that may be transmitted to humans by direct contact, with the food chain, or the environment. Novel data monitoring commensal Escherichia coli from dairy farms is essential for understanding antimicrobial resistance (AMR) patterns and their association with herd health management practices. The objectives of this study were to: (1) compare the prevalence of antimicrobial resistance in the E. coli isolates from the hospital, fresh, and mid-lactation pens from 18 conventional dairy farms participating in an educational training program in antimicrobial stewardship practices in California and Ohio, and (2) to characterize the prevalence of antimicrobial resistance of commensal E. coli isolated from pooled fecal pat samples before and 3 mo after participating in the educational training program. Pooled fecal pat samples were collected from the hospital pen, the fresh pen (1 to 5 DIM), and the mid-lactation pens (90 to 150 DIM) on conventional dairies in CA (n = 9) and OH (n = 9). Fecal samples were collected as part of a larger study using a quasi-experimental design that assigned farms to the training intervention group (TG; 6 per state) or the control group (CG; 3 per state). For the TG, farm worker(s) identified as having the task of diagnosis and treatment of adult cows on the farm participated in a training program on antimicrobial stewardship practices. Pooled fecal samples (n = 7) were collected at enrollment and 3 mo after completing the intervention on each of the participating farms (n = 18), followed by culture for E. coli isolation and antimicrobial sensitivity testing using the broth microdilution methodology. Logistic regression models were used to evaluate the association between E. coli antimicrobial resistance patterns with the training intervention and farm-level factors. No effect was observed in the prevalence of resistant isolates between the control and intervention farms after the training was delivered. Isolates from the hospital pens were 2.48 (95% CI: 1.06-6.22, P = 0.03) and 5.61 (95% CI: 1.94-16.91, P < 0.001) times, more likely to be resistant to streptomycin and chloramphenicol, respectively, than isolates from the mid-lactation pens. Our findings indicate there was a higher prevalence of AMR in E. coli associated with the hospital pen within the farm, while the training program for 3 mo did not affect the prevalence of AMR in E. coli on the farms participating in the program. Further research efforts should be conducted to identify factors driving AMR at the pen level, as well as approaches that could be used to reduce the risk of disseminating AMR from sick pens to animals being housed and to other pens on the farm., (The Authors. Published by Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)
- Published
- 2024
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22. Unveiling the microbiome during post-partum uterine infection: a deep shotgun sequencing approach to characterize the dairy cow uterine microbiome.
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Basbas C, Garzon A, Schlesener C, van Heule M, Profeta R, Weimer BC, Silva-Del-Rio N, Byrne BA, Karle B, Aly SS, Lima FS, and Pereira RV
- Abstract
Background: The goal of this study was to assess the microbial ecology and diversity present in the uterus of post-partum dairy cows with and without metritis from 24 commercial California dairy farms using shotgun metagenomics. A set subset of 95 intrauterine swab samples, taken from a larger selection of 307 individual cow samples previously collected, were examined for α and β diversity and differential abundance associated with metritis. Cows within 21 days post-partum were categorized into one of three clinical groups during sample collection: control (CT, n = 32), defined as cows with either no vaginal discharge or a clear, non-purulent mucus vaginal discharge; metritis (MET, n = 33), defined as a cow with watery, red or brown colored, and fetid vaginal discharge; and purulent discharge cows (PUS, n = 31), defined as a non-fetid purulent or mucopurulent vaginal discharge., Results: All three clinical groups (CT, MET, and PUS) were highly diverse, with the top 12 most abundant genera accounting for 10.3%, 8.8%, and 10.1% of mean relative abundance, respectively. The α diversity indices revealed a lower diversity from samples collected from MET and PUS when compared to CT cows. PERMANOVA statistical testing revealed a significant difference (P adjusted < 0.01) in the diversity of genera between CT and MET samples (R2 = 0.112, P = 0.003) and a non-significant difference between MET and PUS samples (R2 = 0.036, P = 0.046). ANCOM-BC analysis revealed that from the top 12 most abundant genera, seven genera were increased in the natural log fold change (LFC) of abundance in MET when compared to CT samples: Bacteroides, Clostridium, Fusobacterium, Phocaeicola, Porphyromonas, Prevotella, and Streptococcus. Two genera, Dietzia and Microbacterium, were decreased in natural LFC of abundance when comparing MET (regardless of treatment) and CT, while no changes in natural LFC of abundance were observed for Escherichia, Histophilus, and Trueperella., Conclusions: The results presented here, are the current deepest shotgun metagenomic analyses conducted on the bovine uterine microbiome to date (mean of 256,425 genus-level reads per sample). Our findings support that uterine samples from cows without metritis (CT) had increased α-diversity but decreased β-diversity when compared to metritis or PUS cows, characteristic of dysbiosis. In summary, our findings highlight that MET cows have an increased abundance of Bacteroides, Porphyromonas, and Fusobacterium when compared to CT and PUS, and support the need for further studies to better understand their potential causal role in metritis pathogenesis., (© 2023. The Author(s).)
- Published
- 2023
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23. Changes in Uterine Metabolome Associated with Metritis Development and Cure in Lactating Holstein Cows.
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de Oliveira EB, Monteiro HF, Pereira JMV, Williams DR, Pereira RV, Silva Del Rio N, Menta PR, Machado VS, and Lima FS
- Abstract
The objective of this study was to identify alterations in the vaginal discharge (VD) metabolome and potential biomarkers to predict metritis development and a cure in dairy cows. This prospective cohort study was conducted on two dairies located in CA and TX. Vaginal discharge was evaluated and collected using the Metricheck
® device. Cows were examined for metritis at 4, 7, and 9 days in milk (DIM). Cows with a fetid, watery, and reddish-brown uterine discharge were classified as having metritis and randomized to receive ceftiofur ( n = 10) or remain untreated ( n = 7). A cure was defined as the absence of a fetid, watery, reddish-brown uterine discharge at 14 d after enrollment. Vaginal discharge samples were collected from 86 cows within 6 h after parturition, at 4 and 7 DIM, at metritis diagnosis, and at 4 and 7 days after metritis diagnosis. Cows with metritis (MET; n = 17) were paired with counterparts without metritis (HTH) of a similar DIM and parity ( n = 34). The uterine metabolome was evaluated using untargeted gas chromatography time-of-flight mass spectrometry (GC-TOF-MS). Metabolomic data were analyzed using the MetaboAnalyst 5.0. Data were log-transformed and auto-scaled for normalization. Univariate analyses, including the fold-change, were performed to identify the metabolites linked to metritis development and its cure and principal component analysis and partial least squares discriminant analysis were performed to explain metabolite variance between animals developing or not developing metritis and being cured or not being cured of metritis. Comparing HTH with MET cows at calving, 12 metabolites were upregulated, and one was downregulated. At four and seven DIM, 51 and 74 metabolites, respectively, were altered between MET and HTH cows. After metritis development, three and five metabolites were upregulated in cows that were cured and in cows that received treatment and were cured, respectively. In all scenarios, the metabolites lignoceric, malic, and maleic acids, ornithine, and hypotaurine, which are associated with arginine/aminoacyl-tRNA biosynthesis and taurine/purine metabolism, were upregulated in HTH cows. Metritis was associated with changes in the uterine metabolome. Cows not being cured of metritis had changes in the uterus metabolome independent of receiving ceftiofur or remaining untreated. Metabolome analysis may be an important tool to understand the vaginal discharge changes during postpartum and the dynamics of metritis development and cures and help to identify biomarkers to predict metritis being cured.- Published
- 2023
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24. Antimicrobial stewardship on the dairy: Evaluating an on-farm framework for training farmworkers.
- Author
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Garzon A, Portillo R, Habing G, Silva-Del-Rio N, Karle BM, and Pereira RV
- Subjects
- Female, Cattle, Animals, Humans, Farms, Farmers, Antimicrobial Stewardship, Anti-Infective Agents therapeutic use, Cattle Diseases drug therapy
- Abstract
Dairy farmworkers are commonly responsible for disease diagnosis and routine treatment decisions for cattle. This highlights the importance of farmworkers' knowledge and skills to successfully implement judicious use of antimicrobials in livestock production systems. The main objectives of this project were to develop and evaluate an on-farm educational program for farmworkers in antimicrobial stewardship in adult dairy cattle. A longitudinal quasi-experimental study design was used, by enrolling 12 conventional dairy farms in the United States (6 in California and 6 in Ohio). Farmworkers responsible for treatment decisions on the farm (n = 25) participated in a didactic and hands-on 12-wk antimicrobial stewardship training program led by the investigators. All antimicrobial stewardship training materials were available in Spanish and English. Interactive short videos with audio were developed to cover the learning objectives for each of the 6 teaching modules: antimicrobial resistance, treatment protocols, visual identification of sick animals, clinical mastitis, puerperal metritis, and lameness. Pre- and post-training assessments were administered using an online training assessment tool to evaluate changes in knowledge and attitudes about antimicrobial stewardship practices. Cluster analysis and multiple correspondence analyses were conducted to evaluate the association among categorical variables for participants' level of change in knowledge and its association with language, farm size, and state. A 32% average increase in knowledge was observed through an assessment conducted after completing the antimicrobial stewardship training, compared with the pre-training assessment. A significant improvement in 7 of 13 attitude questions related to antimicrobial stewardship practices on the farm was observed. Knowledge and attitude scores of participants on antimicrobial stewardship and identification of sick animals significantly improved after completing the antimicrobial stewardship training. The results observed in this study support the relevance of antimicrobial stewardship training programs targeting farmworkers to improve antimicrobial drug use knowledge and skills., (The Authors. Published by Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)
- Published
- 2023
- Full Text
- View/download PDF
25. Evaluation of antimicrobial resistance and risk factors for recovery of intrauterine Escherichia coli from cows with metritis on California commercial dairy farms.
- Author
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Basbas C, Garzon A, Silva-Del-Rio N, Byrne BA, Karle B, Aly SS, Champagne JD, Williams DR, Lima FS, Machado VS, and Pereira RV
- Subjects
- Animals, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents therapeutic use, Cattle, Cross-Sectional Studies, Drug Resistance, Bacterial, Escherichia coli, Farms, Female, Humans, Risk Factors, Cattle Diseases diagnosis, Cattle Diseases drug therapy, Cattle Diseases epidemiology, Chlortetracycline, Endometritis drug therapy, Endometritis epidemiology, Endometritis veterinary, Escherichia coli Infections drug therapy, Escherichia coli Infections epidemiology, Escherichia coli Infections veterinary, Oxytetracycline, Pelvic Inflammatory Disease
- Abstract
The goals of this study were to evaluate factors affecting recovery and antimicrobial resistance (AMR) in intrauterine E. coli in post-partum dairy cows with and without metritis from commercial California dairy farms. Using a cross-sectional study design, a total of 307 cows were sampled from 25 farms throughout California, from which a total of 162 intrauterine E. coli isolates were recovered. During farm visits, cows within 21 days post-partum were categorized in one of three clinical presentation groups before enrollment: metritis (MET, n = 86), defined as a cow with watery, red or brown colored, and fetid vaginal discharge; cows with purulent discharge (PUS, n = 106), defined as a non-fetid purulent or mucopurulent vaginal discharge; and control cows, (CTL, n = 115) defined as cows with either no vaginal discharge or a clear, non-purulent mucus vaginal discharge. Cows diagnosed as MET had significantly higher odds for recovery of E. coli compared to cows diagnosed as CTL (OR = 2.16, 95% CI: 1.17-3.96), with no significant difference observed between PUS and CTL, and PUS and MET. An increase in days in milk (DIM) at the time of sampling was significantly associated with a decrease in the odds ratio for E. coli recovery from intrauterine swabs (OR = 0.94, 95% CI: 0.89-0.98). All intrauterine E. coli were resistant to ampicillin (AMP), with an AMR prevalence of 30.2% and 33.9% observed for chlortetracycline and oxytetracycline, respectively. Only 8.6% of isolates were resistant to ceftiofur (CEFT), one of the most common drugs used to treat cows on farms sampled. No significant difference in the prevalence of AMR was observed among clinical groups at the individual cow level. At the farm level, a significantly higher odds for isolating intrauterine E. coli resistant to chlortetracycline (OR: 2.6; 95% CI: 3.7-58.0) or oxytetracycline (OR: 1.9; 95% CI: 1.4-33.8) was observed at farms that used an intrauterine infusion of oxytetracycline as a treatment for metritis when compared to those farms that did not use this practice. Findings from this study indicate the need for further research supporting a broader understanding of farm practices driving AMR in cows with metritis, as well as data to increase the accuracy of breakpoints for AMR classification of intrauterine E. coli from cattle., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
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26. Defining clinical diagnosis and treatment of puerperal metritis in dairy cows: A scoping review.
- Author
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Garzon A, Habing G, Lima F, Silva-Del-Rio N, Samah F, and Pereira R
- Subjects
- Animals, Cattle, Female, Milk, Postpartum Period, Cattle Diseases diagnosis, Cattle Diseases drug therapy, Endometritis diagnosis, Endometritis drug therapy, Endometritis veterinary, Vaginal Discharge veterinary
- Abstract
Although puerperal metritis (PM) is a common infectious disease in dairy cattle, there are currently discrepancies between clinical case definitions within and between available peer-reviewed literature and on-farms practices. The inconsistent use of PM criteria across studies and on-farms practices can result in disparities related to recommendations for treating cows, affecting judicious use of antimicrobials. The objective of this study was to systematically review the peer-reviewed literature for clinical signs used for case definition of PM. The criteria used included local (e.g., vaginal discharge) and systemic clinical signs of infection (e.g., fever, drop in milk). The Preferred Reporting Items for Systematic Review and Meta-Analysis extension for scoping reviews protocols were used to screen commonly used databases. Following this protocol, one reviewer screened title and abstract for eligibility (n = 2,096), followed by full-text screening of selected articles (n = 396) by 2 reviewers to confirm eligible articles (n = 174). The most frequently cited reference article (37.5%) for the definition of PM was published in 2006, followed by articles published between 1998 and 2009 (13%). In 40.2% of articles, no reference was provided for definition of PM; vaginal discharge was described in terms of color, odor, and viscosity when related to the PM definition. Terms used for description of vaginal discharge color were red-brown (61.4%), red (5.1%), brown (8.6%), chocolate (4%), white (1.7%), yellow (0.5%), pink (5.7%), or gray (0.5%); vaginal discharge color was not reported in 24.1% articles. The vaginal discharge odor was described as fetid (75.8%), putrid (5.1%), foul (10.3%), or other (5.7%; e.g., abnormal, malodorous, odoriferous); odor was not mentioned in 7.4% of articles. The vaginal discharge viscosity was described as watery (74.1%), purulent (27%), mucopurulent (8.6%), thin (4%), serous (2.8%), or abnormal (2.3%) and was not mentioned in 11.5% of articles. Fever was included in 59.7% of articles as a criterion for PM diagnosis. The most used rectal temperature threshold was ≥39.5°C (56.8%), followed by ≥39.2°C (2.8%). Approaches used for vaginal discharge evaluation included rectal palpation (37.3%), intravaginal exploration with a gloved hand (18.4%), Metricheck (9.8%), or speculum (5.7%); and in 28.7% of articles, diagnostic tools used were not mentioned. Many of the color and odor vaginal discharge descriptions observed in the literature, used synonymous words to describe the same vaginal discharge sample, highlighting a lack of terminology consensus that could result in disagreements, especially due to the subjective character of these clinical evaluations of vaginal discharge color and odor. Although select consensus articles are available, it is common for studies to disregard a reference when defining PM cases. Furthermore, our findings highlight the need for a robust and clear consensus on criteria and terminology used to diagnose PM., (The Authors. Published by Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).)
- Published
- 2022
- Full Text
- View/download PDF
27. Tuberculosis Prevalence Among US Crop-Workers, 2000 to 2012: Trends and Contributing Factors.
- Author
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Medel-Herrero A, Martínez-López B, Silva-Del-Rio N, Pires AF, Edmondson A, and Schenker M
- Subjects
- Adolescent, Adult, Databases, Factual, Economic Recession, Female, Health Services Accessibility, Humans, Insurance, Health, Language, Male, Medically Underserved Area, Prevalence, Risk Factors, Surveys and Questionnaires, Tuberculosis, Pulmonary ethnology, United States, Young Adult, Agriculture statistics & numerical data, Hispanic or Latino statistics & numerical data, Tuberculosis, Pulmonary epidemiology
- Abstract
Objective: We intend to study tuberculosis (TB) in one of the poorest communities in the US, hired agriculture workers, for most recent years (2000 to 2012) including the last recession period., Methods: Time-chart, simple mean differences, and logistic regressions were used to describe TB-prevalence and risk factors among US crop-workers. Data were drawn from the National Agricultural Workers Survey (NAWS)., Results: A high TB-prevalence was found among crop-workers with a dramatically increasing trend in recent years. Hispanic ethnicity, having farmworker family members, the presence of health insurance, and good spoken English were associated with an increased TB-prevalence., Conclusion: We found risk factors related to ethnicity and poor access to health care, a strong association between agriculture activity and TB, and an increase of TB-cases due to the 2008 downturn in this underserved population. We urge the health authorities to control this epidemic.
- Published
- 2018
- Full Text
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28. Management of dry and transition cows to improve energy balance and reproduction.
- Author
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Grummer RR, Wiltbank MC, Fricke PM, Watters RD, and Silva-Del-Rio N
- Subjects
- Aging, Animals, Cattle Diseases diet therapy, Cattle Diseases therapy, Diet, Female, Lactation physiology, Lactation Disorders diet therapy, Lactation Disorders therapy, Lactation Disorders veterinary, Milk metabolism, Postpartum Period physiology, Pregnancy, Time Factors, Cattle physiology, Dairying methods, Energy Metabolism physiology, Reproduction physiology
- Abstract
Fertility of dairy cows has decreased for the past several decades. Measures of energy balance (EB; e.g., change in EB, EB nadir, cumulative negative EB, or duration of negative EB) are related to reproductive performance. Our research group has concluded that modification of diets fed during the dry or transition period are unlikely to have significant effects on postpartum EB and fertility. Rather, more radical alterations in dairy management are needed if energy status of postpartum cows is to be improved. We have examined the potential to alter EB by shortening or eliminating the dry period. In an initial study, the effects of a 56, 28, and 0 d dry period on ovarian dynamics and reproductive performance of dairy cows were examined. Postpartum EB was improved by reducing the dry period; however, only significantly for the 0 d dry period. Cows on the 0 d dry period did not experience negative EB. Improvements in EB were a reflection of lower milk production and greater feed intake. Consistent with the improvements in EB, time to first ovulation and first service, first service conception rate, services per conception, and days open were all improved by reduction of dry period length. Because small animal numbers were used in the study, a second study was conducted on a commercial dairy with many more animals to determine if results from the initial trial could be duplicated. A comparison was made between a 55 and 34 d dry period. Shortening the dry period resulted in fewer days to first ovulation, fewer days open, and a greater percentage of cows pregnant at 150 days in milk, although the improvements in the latter two variables were only significant for cows in their third or greater lactation. A current study is being performed in a large commercial dairy to examine the effects of eliminating the dry period on reproduction utilizing a large commercial dairy.
- Published
- 2010
- Full Text
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29. Effects of abomasal infusion of linseed oil on responses to glucose and insulin in holstein cows.
- Author
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Pires JA, Pescara JB, Brickner AE, Silva Del Rio N, Cunha AP, and Grummer RR
- Subjects
- Abomasum metabolism, Animal Nutritional Physiological Phenomena, Animals, Blood Chemical Analysis veterinary, Blood Glucose analysis, Blood Glucose drug effects, Cross-Over Studies, Fats administration & dosage, Fats analysis, Fatty Acids blood, Fatty Acids, Nonesterified blood, Fatty Acids, Nonesterified metabolism, Female, Food Deprivation, Glucose Tolerance Test veterinary, Insulin blood, Linseed Oil analysis, Linseed Oil metabolism, Random Allocation, Time Factors, Water administration & dosage, Water metabolism, Blood Glucose metabolism, Cattle metabolism, Dietary Supplements analysis, Insulin metabolism, Linseed Oil administration & dosage
- Abstract
The objective was to study the effects of abomasal infusion of linseed oil, a source rich in n-3 C18:3, on whole-body response to insulin (experiment 1) and on insulin antilipolytic effects during feed restriction (experiment 2). In experiment 1, eight nonlactating, non-gestating cows were assigned to a crossover design, fed to meet maintenance requirements, and infused abomasally with either linseed oil (LIN) or tallow (TAL) at a rate of 0.54 g/kg of body weight per d for 5.5 d. Infusions were performed every 8 h during the first 3 d of each period and every 4 h thereafter. Intravenous glucose tolerance tests (IVGTT) were performed on d 5 of each period, followed by i.v. insulin challenges (IC) 12 h later. In experiment 2, six nonlactating, nongestating cows were assigned to a replicated 3 x 3 Latin square design. The experimental protocol included a water (WTR) treatment and feeding was suspended on d 3, leading to 50 and 62 h of feed restriction before IVGTT and IC, respectively. Clearance of glucose during IVGTT and IC was not affected by treatments in either experiment. However, LIN had an insulin sensitizing effect in experiment 1, because a lower insulin concentration led to the same clearance of glucose as TAL. In experiment 1, plasma nonesterified fatty acid (NEFA) concentration was low, reflecting a postprandial state, but NEFA was greater for LIN than TAL during IVGTT (108 vs. 88 +/- 4 microEq/L) and IC (133 vs. 83 +/- 9 microEq/L). In experiment 2, insulin concentrations during IVGTT did not differ across treatments. Basal plasma NEFA concentration before IVGTT tended to be greater for LIN than for TAL (612 vs. 508 microEq/L). Plasma NEFA clearance rate during IVGTT was greater for LIN than for TAL (2.8 vs. 2.5%/min), leading to a shorter time to reach half NEFA concentration (25 vs. 29 min) and greater absolute value of NEFA response area under the curve [AUC; -64,150 vs. -46,402 (microEq/L) x 180 min]. Data suggest that LIN enhanced the antilipolytic effects of insulin. Yet, other factors could have been involved because plasma NEFA concentration before IVGTT was 104 muEq/L greater for LIN than TAL for unknown reasons.
- Published
- 2008
- Full Text
- View/download PDF
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