137 results on '"Shi YG"'
Search Results
2. Understanding the role of ten-eleven translocation family proteins in kidney diseases.
- Author
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Zhang Y, Li J, Tan L, Xue J, and Shi YG
- Subjects
- Humans, Animals, Kidney Diseases metabolism, Kidney Diseases genetics, Epigenesis, Genetic, 5-Methylcytosine metabolism, 5-Methylcytosine analogs & derivatives, Mice, Sin3 Histone Deacetylase and Corepressor Complex metabolism, Sin3 Histone Deacetylase and Corepressor Complex genetics, Kidney metabolism, Mixed Function Oxygenases, Dioxygenases metabolism, Dioxygenases genetics, Proto-Oncogene Proteins metabolism, Proto-Oncogene Proteins genetics, DNA Methylation, DNA-Binding Proteins metabolism, DNA-Binding Proteins genetics
- Abstract
Epigenetic mechanisms play a critical role in the pathogenesis of human diseases including kidney disorders. As the erasers of DNA methylation, Ten-eleven translocation (TET) family proteins can oxidize 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC), thus leading to passive or active DNA demethylation. Similarly, TET family proteins can also catalyze the same reaction on RNA. In addition, TET family proteins can also regulate chromatin structure and gene expression in a catalytic activity-independent manner through recruiting the SIN3A/HDAC co-repressor complex. In 2012, we reported for the first time that the genomic 5-hydroxymethylcytosine level and the mRNA levels of Tet1 and Tet2 were significantly downregulated in murine kidneys upon ischemia and reperfusion injury. Since then, accumulating evidences have eventually established an indispensable role of TET family proteins in not only acute kidney injury but also chronic kidney disease. In this review, we summarize the upstream regulatory mechanisms and the pathophysiological role of TET family proteins in major types of kidney diseases and discuss their potential values in clinical diagnosis and treatment., (© 2024 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.)
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- 2024
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3. Effects of rumen metabolite butyric acid on bovine skeletal muscle satellite cells proliferation, apoptosis and transcriptional states during myogenic differentiation.
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Wang XW, Ding YL, Li CL, Ma Q, Shi YG, Liu GE, Li CJ, and Kang XL
- Abstract
Butyric acid, a pivotal short-chain fatty acid in rumen digestion, profoundly influences animal digestive and locomotor systems. Extensive research indicates its direct or indirect involvement in the growth and development of muscle and fat cells. However, the impact of butyric acid on the proliferation and differentiation of bovine skeletal muscle satellite cells (SMSCs) remains unclear. This study aimed to elucidate the effects of butyrate on SMSCs proliferation and differentiation. After isolating, SMSCs were subjected to varying concentrations of sodium butyrate (NaB) during the proliferation and differentiation stages. Optimal treatment conditions (1 mM NaB for 2 days) were determined based on proliferative force, cell viability, and mRNA expression of proliferation and differentiation marker genes. Transcriptome sequencing was employed to screen for differential gene expression between 1 mM NaB-treated and untreated groups during SMSCs differentiation. Results indicated that lower NaB concentrations (≤1.0 mM) inhibited proliferation while promoting differentiation and apoptosis after a 2-day treatment. Conversely, higher NaB concentrations (≥2.0 mM) suppressed proliferation and differentiation and induced apoptosis. Transcriptome sequencing revealed differential expression of genes(ND1, ND3, CYTB, COX2, ATP6, MYOZ2, MYOZ3, MYBPC1 and ATP6V0A4,etc.) were associated with SMSCs differentiation and energy metabolism, enriching pathways such as Oxidative phosphorylation, MAPK, and Wnt signaling. These findings offer valuable insights into the molecular mechanisms underlying butyrate regulation of bovine SMSCs proliferation and differentiation, as well as muscle fiber type conversion in the future study., Competing Interests: Declaration of competing interest The authors confirm that there are no conflicts of interest., (Copyright © 2024. Published by Elsevier Inc.)
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- 2024
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4. Application of a single-cell-RNA-based biological-inspired graph neural network in diagnosis of primary liver tumors.
- Author
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Zhang DH, Liang C, Hu SY, Huang XY, Yu L, Meng XL, Guo XJ, Zeng HY, Chen Z, Zhang L, Pei YZ, Ye M, Cai JB, Huang PX, Shi YH, Ke AW, Chen Y, Ji Y, Shi YG, Zhou J, Fan J, Yang GH, Sun QM, Shi GM, and Lu JC
- Subjects
- Humans, RNA metabolism, Carcinoma, Hepatocellular diagnosis, Carcinoma, Hepatocellular genetics, Carcinoma, Hepatocellular pathology, Sequence Analysis, RNA, Liver Neoplasms diagnosis, Liver Neoplasms genetics, Liver Neoplasms pathology, Single-Cell Analysis methods, Neural Networks, Computer
- Abstract
Single-cell technology depicts integrated tumor profiles including both tumor cells and tumor microenvironments, which theoretically enables more robust diagnosis than traditional diagnostic standards based on only pathology. However, the inherent challenges of single-cell RNA sequencing (scRNA-seq) data, such as high dimensionality, low signal-to-noise ratio (SNR), sparse and non-Euclidean nature, pose significant obstacles for traditional diagnostic approaches. The diagnostic value of single-cell technology has been largely unexplored despite the potential advantages. Here, we present a graph neural network-based framework tailored for molecular diagnosis of primary liver tumors using scRNA-seq data. Our approach capitalizes on the biological plausibility inherent in the intercellular communication networks within tumor samples. By integrating pathway activation features within cell clusters and modeling unidirectional inter-cellular communication, we achieve robust discrimination between malignant tumors (including hepatocellular carcinoma, HCC, and intrahepatic cholangiocarcinoma, iCCA) and benign tumors (focal nodular hyperplasia, FNH) by scRNA data of all tissue cells and immunocytes only. The efficacy to distinguish iCCA from HCC was further validated on public datasets. Through extending the application of high-throughput scRNA-seq data into diagnosis approaches focusing on integrated tumor microenvironment profiles rather than a few tumor markers, this framework also sheds light on minimal-invasive diagnostic methods based on migrating/circulating immunocytes., (© 2024. The Author(s).)
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- 2024
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5. Effects of soy protein isolate interaction with brown rice starch on the multiscale structure of brown rice bread.
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Wang YY, Yang Y, Bian X, Ma CM, Ren LK, Fu Y, Liu BX, Fu JN, Shi YG, and Zhang N
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- Taste, Germination, Hydrogen Bonding, Hardness, Cooking, Food Handling methods, Oryza chemistry, Oryza growth & development, Oryza metabolism, Bread analysis, Starch chemistry, Starch metabolism, Soybean Proteins chemistry
- Abstract
Background: Gluten-free bread (GFB) has technical bottlenecks such as hard texture, rough taste and low nutrition in practical production. In order to solve these problems, this study used germinated brown rice starch as the main raw material, and investigated the effects of soybean isolate protein (SPI) on the multiscale structure of germinated brown rice starch and bread quality., Results: A gluten-free rice bread process simulation system was established, and the interaction between SPI and starch in the simulation system was characterized. The result shows that the interaction forces between SPI and germinated brown rice starch were mainly represented by hydrogen bonds, and with the addition of SPI, the crystallinity of starch showed a downward trend. At the same time, when the amount of SPI was 3%, the appearance quality was the best and the specific volume of bread was 1.08 mL g
-1 . When the amount of SPI was 6%, the texture quality was the best. Compared with the bread without SPI, the hardness of the bread with 6% SPI was reduced by 0.13 times, the springiness was increased by 0.03 times, the color was the most vibrant, the L* value being 1.02 times the original, and the baking loss was reduced to 0.98 times the original., Conclusions: The interaction force between SPI and germinated brown rice starch and its effect on bread quality were clarified, and these results inform choices about providing a theoretical basis for the subsequent development of higher-quality GFB. © 2024 Society of Chemical Industry., (© 2024 Society of Chemical Industry.)- Published
- 2025
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6. Characterization of structural and functional properties of soybean 11S globulin during renaturation after denaturation induced by changes in pH.
- Author
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Yang Y, Zhang C, Ma CM, Bian X, Zou L, Fu Y, Shi YG, Wu Y, and Zhang N
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- Hydrogen-Ion Concentration, Solubility, Protein Structure, Secondary, Globulins chemistry, Protein Denaturation, Glycine max chemistry, Soybean Proteins chemistry
- Abstract
Background: This study explored the denaturation of 11S globulin, a protein known for its diverse functional properties in soy protein applications, at pH 3.0 and pH 10.0, followed by a gradual return to pH 7.0 to facilitate renaturation. It investigated the structural and functional changes during renaturation induced by a change in pH, revealing the stabilization mechanism of 11S globulin., Results: The findings revealed that during pH adjustment to neutral, the denatured soybean 11S globulin - resulting from alkaline (pH 10.0) or acidic (pH 3.0) treatments - experienced a refolding of its extended tertiary structure to varying extents. The particle size and the proportions of α-helix and β-sheet in the secondary structure aligned progressively with those of the natural-state protein. However, for the alkali-denatured 11S, the β-sheet content decreased upon adjustment to neutral, whereas an increase was observed for the acid-denatured 11S. In terms of functional properties, after alkaline denaturation, the foaming capacity (FC) and emulsifying activity index (EAI) of 11S increased by 1.4 and 1.2 times, respectively, in comparison with its native state. The solubility, foamability, and emulsifiability of the alkali-denatured 11S gradually diminished during renaturation but remained superior to those of the native state. Conversely, these properties showed an initial decline, followed by an increase during renaturation triggered by pH neutralization., Conclusions: This research contributes to the enhancement of protein functionality, offering a theoretical foundation for the development of functional soy protein products and expanding their potential applications. © 2024 Society of Chemical Industry., (© 2024 Society of Chemical Industry.)
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- 2024
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7. Ascorbic acid potentiates photodynamic inactivation mediated by octyl gallate and blue light for rapid eradication of planktonic bacteria and biofilms.
- Author
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Zheng MZ, Chen WX, Zhao YX, Fang Q, Wang LG, Tian SY, Shi YG, and Chen JS
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- Photosensitizing Agents pharmacology, Photosensitizing Agents chemistry, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents chemistry, Microbial Viability drug effects, Microbial Viability radiation effects, Reactive Oxygen Species metabolism, Plankton drug effects, Plankton radiation effects, Blue Light, Biofilms drug effects, Ascorbic Acid pharmacology, Ascorbic Acid chemistry, Light, Staphylococcus aureus drug effects, Staphylococcus aureus physiology, Gallic Acid pharmacology, Gallic Acid chemistry, Gallic Acid analogs & derivatives, Escherichia coli drug effects
- Abstract
This study reported for the first time that Ascorbic acid (AA) could appreciably boost the efficiency of Octyl gallate (OG)-mediated photodynamic inactivation (PDI) on Escherichia coli and Staphylococcus aureus in planktonic and biofilm states. The combination of OG (0.075 mM) and AA (200 mM) with 420 nm blue light (212 mW/cm
2 ) led to a >6 Log killing within only 5 min for E. coli and S. aureus and rapid eradication of biofilms. The mechanism of action appears to be the generation of highly toxic hydroxyl radicals (•OH) via photochemical pathways. OG was exposed to BL irradiation to generate various reactive oxygen radicals (ROS) and the addition of AA could transform singlet oxygen (1 O2 ) into hydrogen peroxide (H2 O2 ), which could further react with AA to generate enormous •OH. These ROS jeopardized bacteria and biofilms by nonspecifically attacking various biomacromolecules. Overall, this PDI strategy provides a powerful microbiological decontamination modality to guarantee safe food products., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)- Published
- 2024
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8. Terahertz manipulation of nonlinear optical response in topological material PtBi 2 .
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Gao Y, Zeng XY, Wang XB, Shi YG, Cheng L, and Qi J
- Abstract
The substantial nonlinear optical response observed in numerous topological materials renders them well-suited for optic and photonic applications, underscoring the critical need to devise effective strategies for manipulating their nonlinearity to enhance their versatility across different applications. In this Letter, we focus on the second-harmonic generation (SHG) response of the topological material PtBi
2 under intense terahertz (THz) pulses and unveil the transient nonlinearity manipulated by a THz electric field. Our findings demonstrate that upon excitation of an intense THz pulse, there emerges a substantial enhancement in the SHG signal of PtBi2 , which is predominantly attributed to the linear term involving the THz field, i.e., χ(2) χ(3) ETHz . We also clearly observe the transient change in the nonlinear coefficients, which could arise from the excitation of the bands with linear dispersion via the intense THz pulse. These findings bear significant implications for achieving ultrafast modulation of nonlinearity in topological materials, thereby opening avenues for advanced applications in this field.- Published
- 2024
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9. Resonant x-ray diffraction measurements in charge ordered kagome superconductors KV 3 Sb 5 and RbV 3 Sb 5 .
- Author
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Scagnoli V, Riddiford LJ, Huang SW, Shi YG, Tu Z, Lei H, Bombardi A, Nisbet G, and Guguchia Z
- Abstract
We report on (resonant) x-ray diffraction experiments on the normal state properties of kagome-lattice superconductors KV
3 Sb5 and RbV3 Sb5 . We have confirmed previous reports indicating that the charge density wave (CDW) phase is characterized by a doubling of the unit cell in all three crystallographic directions. By monitoring the temperature dependence of Bragg peaks associated with the CDW phase, we ascertained that it develops gradually over several degrees, as opposed to CsV3 Sb5 , where the CDW peak intensity saturates promptly just below the CDW transition temperature. Analysis of symmetry modes indicates that this behavior arises due to lattice distortions linked to the formation of CDWs. These distortions occur abruptly in CsV3 Sb5 , while they progress more gradually in RbV3 Sb5 and KV3 Sb5 . In contrast, the amplitude of the mode leading to the crystallographic symmetry breaking fromP6/mmmto Fmmm appears to develop more gradually in CsV3 Sb5 as well. Diffraction measurements close to the V K edge and the Sb L1 edge show no sensitivity to inversion- or time-symmetry breaking, which are claimed to be associated with the onset of the CDW phase. The azimuthal angle dependence of the resonant diffraction intensity observed at the Sb L1 edge is associated with the difference in the population of unoccupied states and the anisotropy of the electron density of certain Sb ions., (Creative Commons Attribution license.)- Published
- 2024
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10. METTL14 regulates chromatin bivalent domains in mouse embryonic stem cells.
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Mu M, Li X, Dong L, Wang J, Cai Q, Hu Y, Wang D, Zhao P, Zhang L, Zhang D, Cheng S, Tan L, Wu F, Shi YG, Xu W, Shi Y, and Shen H
- Published
- 2023
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11. Ultraefficient OG-Mediated Photodynamic Inactivation Mechanism for Ablation of Bacteria and Biofilms in Water Augmented by Potassium Iodide under Blue Light Irradiation.
- Author
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Shi YG, Chen WX, Zheng MZ, Zhao YX, Wang YR, Chu YH, Du ST, Shi ZY, Gu Q, and Chen JS
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- Bacteria genetics, Biofilms, Potassium Iodide pharmacology, Drinking Water
- Abstract
While photodynamic inactivation (PDI) has emerged as a novel sterilization strategy for drinking water treatment that recently attracted tremendous attention, its efficiency needs to be further improved. In this study, we aimed to clarify the ultraefficient mechanism by which potassium iodide (KI) potentiates octyl gallate (OG)-mediated PDI against bacteria and biofilms in water. When OG (0.15 mM) and bacteria were exposed to blue light (BL, 420 nm, 210 mW/cm
2 ), complete sterilization (>7.5 Log cfu/mL of killing) was achieved by the addition of KI (250 mM) within only 5 min (63.9 J/cm2 ). In addition, at lower doses of OG (0.1 mM) with KI (100 mM), the biofilm was completely eradicated within 10 min (127.8 J/cm2 ). The KI-potentiated mechanism involves in situ rapid photogeneration of a multitude of reactive oxygen species, especially hydroxyl radicals (• OH), reactive iodine species, and new photocytocidal substances (quinone) by multiple photochemical pathways, which led to the destruction of cell membranes and membrane proteins, the cleavage of genomic DNA and extracellular DNA within biofilms, and the degradation of QS signaling molecules. This multitarget synergistic strategy provided new insights into the development of an environmentally friendly, safe, and ultraefficient photodynamic drinking water sterilization technology.- Published
- 2023
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12. Case report: A Chinese patient with spinocerebellar ataxia finally confirmed as Gerstmann-Sträussler-Scheinker syndrome with P102L mutation.
- Author
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Chen L, Xu Y, Fang MJ, Shi YG, Zhang J, Zhang LL, Wang Y, Han YZ, Hu JY, Yang RM, and Yu XE
- Abstract
Gerstmann-Sträussler-Scheinker syndrome (GSS) is a rare genetic prion disease caused by a mutation in the prion protein ( PRNP ) gene. It is typically characterized by progressive cerebellar ataxia and slowly progressive dementia. We present a case study of the GSS from China in which a 45-year-old male with a progressive gait and balance disorder developed cerebellar ataxia onset but was misdiagnosed as spinocerebellar ataxia (SCA) for 2 years. The patient's clinical, electrophysiological, and radiological data were retrospectively analyzed. Examination revealed ataxia, dysarthria, muscle weakness, areflexia in lower limbs, including a pyramidal sign, whereas cognitive decline was insignificant. His late mother had a similar unsteady gait. An electroencephalogram (EEG) showed normal findings, and 14-3-3 protein was negative. A brain MRI was performed for global brain atrophy and ventricular enlargement. Positron emission tomography-computed tomography (PET-CT) (18F-fluoro-2-deoxy-d-glucose, FDG) images showed mild to moderate decreased glucose metabolism in the left superior parietal lobe and left middle temporal lobe. According to genetic testing, his younger brother also had the P102L variant in the PRNP gene. This single case adds to the clinical and genetic phenotypes of GSS., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Chen, Xu, Fang, Shi, Zhang, Zhang, Wang, Han, Hu, Yang and Yu.)
- Published
- 2023
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13. Effects of soybean isoflavone aglycone on osteoporosis in ovariectomized rats.
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Li LL, Yang Y, Ma CM, Li XM, Bian X, Fu Y, Ren LK, Wang RM, Shi YG, and Zhang N
- Abstract
Postmenopausal osteoporosis is one of the most common metabolic diseases in old women, and supplementing estrogen through bioactive substances is one of the important ways to improve menopausal syndrome. Some studies have confirmed that soybean isoflavone has estrogenic activity, and the main active component of soybean isoflavones is isoflavone aglycones. However, few studies have investigated the improvement effect of high-purity soy isoflavone aglycones on postmenopausal osteoporosis. Thus, the effect of different doses of high-purity soybeans isoflavone aglycone on the ovariectomized female osteoporosis rat model was evaluated by oral gavage. The rats were divided into seven experimental groups including SHAM, OVX, EE, SIHP, AFDP-L, AFDP-M, and AFDP-H, which was administered for 60 days from 30 days after ovariectomy. We collected blood from the abdominal aorta of rats on the 30th, 60th, and 90th days respectively, analyzed its serum biochemistry, and took out the femur for micro-CT imaging and bone microstructure parameter analysis. Results showed that the intervention effect of AFDP-H group on osteoporosis rats at 60 and 90 days was similar to that of EE group, and superior to the OVX group, SIHP group, AFDP-L group, AFDP-M group. The AFDP-H group inhibited the decrease in serum bone markers, bone density, trabeculae quantity, trabeculae thickness, and bone volume fraction, and increased the trabecular separation caused by ovariectomy, thereby significantly improving bone microstructure. It also prevented continuous weight gain and increased cholesterol levels in female rats. This study provided theoretical to application of soybean isoflavone aglycone in the intervention of osteoporosis. and confirmed that could replace chemical synthetic estrogen drugs., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Li, Yang, Ma, Li, Bian, Fu, Ren, Wang, Shi and Zhang.)
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- 2023
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14. Loss of 5-hydroxymethylcytosine induces chemotherapy resistance in hepatocellular carcinoma via the 5-hmC/PCAF/AKT axis.
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Guo XJ, Huang XY, Yang X, Lu JC, Wei CY, Gao C, Pei YZ, Chen Y, Sun QM, Cai JB, Zhou J, Fan J, Ke AW, Shi YG, Shen YH, Zhang PF, Shi GM, and Yang GH
- Subjects
- Humans, Proto-Oncogene Proteins c-akt, 5-Methylcytosine, Carcinoma, Hepatocellular drug therapy, Carcinoma, Hepatocellular genetics, Carcinoma, Hepatocellular pathology, Liver Neoplasms drug therapy, Liver Neoplasms genetics, Liver Neoplasms pathology
- Abstract
Multidrug resistance is a major challenge in treating advanced hepatocellular carcinoma (HCC). Although recent studies have reported that the multidrug resistance phenotype is associated with abnormal DNA methylation in cancer cells, the epigenetic mechanism underlying multidrug resistance remains unknown. Here, we reported that the level of 5-hydroxymethylcytosine (5-hmC) in human HCC tissues was significantly lower than that in adjacent liver tissues, and reduced 5-hmC significantly correlated with malignant phenotypes, including poor differentiation and microvascular invasion; additionally, loss of 5-hmC was related to chemotherapy resistance in post-transplantation HCC patients. Further, the 5-hmC level was regulated by ten-eleven translocation 2 (TET2), and the reduction of TET2 in HCC contributes to chemotherapy resistance through histone acetyltransferase P300/CBP-associated factor (PCAF) inhibition and AKT signaling hyperactivation. In conclusion, loss of 5-hmC induces chemotherapy resistance through PCAF/AKT axis and is a promising chemosensitivity prediction biomarker and therapeutic target for HCC patients., (© 2023. The Author(s).)
- Published
- 2023
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15. Targeting the LSD1/KDM1 Family of Lysine Demethylases in Cancer and Other Human Diseases.
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Mao F and Shi YG
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- Humans, Histones, Histone Demethylases genetics, Histone Demethylases chemistry, Histone Demethylases metabolism, Lysine, Neoplasms drug therapy, Neoplasms genetics
- Abstract
Lysine-specific demethylase 1 (LSD1) was the first histone demethylase discovered and the founding member of the flavin-dependent lysine demethylase family (KDM1). The human KDM1 family includes KDM1A and KDM1B, which primarily catalyze demethylation of histone H3K4me1/2. The KDM1 family is involved in epigenetic gene regulation and plays important roles in various biological and disease pathogenesis processes, including cell differentiation, embryonic development, hormone signaling, and carcinogenesis. Malfunction of many epigenetic regulators results in complex human diseases, including cancers. Regulators such as KDM1 have become potential therapeutic targets because of the reversibility of epigenetic control of genome function. Indeed, several classes of KDM1-selective small molecule inhibitors have been developed, some of which are currently in clinical trials to treat various cancers. In this chapter, we review the discovery, biochemical, and molecular mechanisms, atomic structure, genetics, biology, and pathology of the KDM1 family of lysine demethylases. Focusing on cancer, we also provide a comprehensive summary of recently developed KDM1 inhibitors and related preclinical and clinical studies to provide a better understanding of the mechanisms of action and applications of these KDM1-specific inhibitors in therapeutic treatment., (© 2023. Springer Nature Switzerland AG.)
- Published
- 2023
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16. Crystal Growth, Structural Transition, and Magnetic Properties of Ho 5 Pd 4 Sn 12 .
- Author
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Liu HX, Li J, Miao SS, Feng HL, Li JQ, and Shi YG
- Abstract
Single crystals and polycrystalline samples of Ho
5 Pd4 Sn12 have been synthesized using flux and arc-melting methods, respectively. Single-crystal X-ray diffraction studies indicate that Ho5 Pd4 Sn12 crystallizes in a tetragonal structure ( I 4/ m ) at room temperature and transforms into a monoclinic structure ( C 2/ m ) below ∼194 K. This structural transition is further supported by a transmission electron microscopy study and an anomaly at ∼194 K in the specific heat data. Temperature-dependent resistivity data also show a kink around the structural transition temperature. Ho5 Pd4 Sn12 is antiferromagnetically ordered below 7 K. Ho5 Pd4 Sn12 shows magnetic anisotropy, and the isothermal magnetization curve ( H ⊥ c ) at 2 K exhibits a field-induced magnetic phase transition around 22.8 kOe.- Published
- 2022
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17. Dual-Stage Blue-Light-Guided Membrane and DNA-Targeted Photodynamic Inactivation Using Octyl Gallate for Ultraefficient Eradication of Planktonic Bacteria and Sessile Biofilms.
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Shi YG, Lin S, Chen WX, Jiang L, Gu Q, Li DH, and Chen YW
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- Bacteria, Biofilms, DNA, Gallic Acid analogs & derivatives, Photosensitizing Agents pharmacology, Plankton
- Abstract
This study aimed to investigate the synergistic bactericidal activity and mechanism of dual-stage light-guided membrane and DNA-targeted photodynamic inactivation (PDI) by the combination of blue light (BL, 420 nm) and the food additive octyl gallate (OG) against Vibrio parahaemolyticus in planktonic and biofilm growth modes. While OG serves as an outstanding exogenous photosensitizer, the planktonic cells were not visibly detectable after the OG-mediated PDI treatment with 0.2 mM OG within 15 min (191.7 J/cm
2 ), and its biofilm was nearly eradicated within 60 min (383.4 J/cm2 ). Gram-positive Staphylococcus aureus was more susceptible to the PDI than Gram-negative V. parahaemolyticus . The cellular wall and proteins, as well as DNA, were the vulnerable targets for PDI. The membrane integrity could be initially disrupted by OG bearing a hydrophilic head and a hydrophobic tail via transmembrane insertion. The enhancement of OG uptake due to the first-stage light-assisted photochemical internalization (PCI) promoted the accumulation of OG in cells. It further boosted the second-stage light irradiation of the photosensitizer-inducing massive cell death. Upon the second-stage BL irradiation, reactive oxygen species (ROS) generated through the OG-mediated PDI in situ could extensively deconstruct membranes, proteins, and DNA, as well as biofilms, while OG could be activated by BL to carry out photochemical reactions involving the formation of OG-bacterial membrane protein (BMP) covalent conjugates and the interactions with DNA. This dual-stage light-guided subcellular dual-targeted PDI strategy exhibits encouraging effects on the eradication of planktonic bacteria and sessile biofilms, which provides a new insight into the development of an ultraeffective antimicrobial and biofilm removing/reducing technique to improve microbiological safety in the food industry.- Published
- 2022
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18. Ultra-efficient antimicrobial photodynamic inactivation system based on blue light and octyl gallate for ablation of planktonic bacteria and biofilms of Pseudomonas fluorescens.
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Shi YG, Jiang L, Lin S, Jin WG, Gu Q, Chen YW, Zhang K, and Ettelaie R
- Subjects
- Anti-Bacterial Agents, Biofilms, Gallic Acid analogs & derivatives, Plankton, Pseudomonas fluorescens
- Abstract
Pseudomonas fluorescens is a Gram-negative spoilage bacterium and dense biofilm producer, causing food spoilage and persistent contamination. Here, we report an ultra-efficient photodynamic inactivation (PDI) system based on blue light (BL) and octyl gallate (OG) to eradicate bacteria and biofilms of P. fluorescens. OG-mediated PDI could lead to a > 5-Log reduction of viable cell counts within 15 min for P. fluorescens. The activity is exerted through rapid penetration of OG towards the cells with the generation of a high-level toxic reactive oxygen species triggered by BL irradiation. Moreover, OG plus BL irradiation can efficiently not only prevent the formation of biofilms but also scavenge the existing biofilms. Additionally, it was shown that the combination of OG/poly(lactic acid) electrospun nanofibers and BL have great potential as antimicrobial packagings for maintaining the freshness of the salamander storge. These prove that OG-mediated PDI can provide a superior platform for eradicating bacteria and biofilm., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2022
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19. Dynamic control of chromatin-associated m 6 A methylation regulates nascent RNA synthesis.
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Xu W, He C, Kaye EG, Li J, Mu M, Nelson GM, Dong L, Wang J, Wu F, Shi YG, Adelman K, Lan F, Shi Y, and Shen H
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- Methylation, RNA genetics, RNA metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, Chromatin genetics, Methyltransferases genetics, Methyltransferases metabolism
- Abstract
N
6 -methyladenosine (m6 A) methylation is co-transcriptionally deposited on mRNA, but a possible role of m6 A on transcription remains poorly understood. Here, we demonstrate that the METTL3/METTL14/WTAP m6 A methyltransferase complex (MTC) is localized to many promoters and enhancers and deposits the m6 A modification on nascent transcripts, including pre-mRNAs, promoter upstream transcripts (PROMPTs), and enhancer RNAs. PRO-seq analyses demonstrate that nascent RNAs originating from both promoters and enhancers are significantly decreased in the METTL3-depleted cells. Furthermore, genes targeted by the Integrator complex for premature termination are depleted of METTL3, suggesting a potential antagonistic relationship between METTL3 and Integrator. Consistently, we found the Integrator complex component INTS11 elevated at promoters and enhancers upon loss of MTC or nuclear m6 A binders. Taken together, our findings suggest that MTC-mediated m6 A modification protects nascent RNAs from Integrator-mediated termination and promotes productive transcription, thus unraveling an unexpected layer of gene regulation imposed by RNA m6 A modification., Competing Interests: Declaration of interests Y.S. is a co-founder of and holds equity in K36 Therapeutics. Y.S. is a consultant for Active Motif, a member of the Scientific Advisory Board of the College of Life Sciences, West Lake University, and a member of the MD Anderson External Advisory Board. K.A. received research funding from Novartis not related to this work, is a consultant for Syros Pharmaceuticals, is on the SAB of CAMP4 Therapeutics, and is a member of the Advisory Board of Molecular Cell. All other authors declare no competing interests., (Copyright © 2022 Elsevier Inc. All rights reserved.)- Published
- 2022
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20. Antiferromagnetic excitonic insulator state in Sr 3 Ir 2 O 7 .
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Mazzone DG, Shen Y, Suwa H, Fabbris G, Yang J, Zhang SS, Miao H, Sears J, Jia K, Shi YG, Upton MH, Casa DM, Liu X, Liu J, Batista CD, and Dean MPM
- Abstract
Excitonic insulators are usually considered to form via the condensation of a soft charge mode of bound electron-hole pairs. This, however, presumes that the soft exciton is of spin-singlet character. Early theoretical considerations have also predicted a very distinct scenario, in which the condensation of magnetic excitons results in an antiferromagnetic excitonic insulator state. Here we report resonant inelastic x-ray scattering (RIXS) measurements of Sr
3 Ir2 O7 . By isolating the longitudinal component of the spectra, we identify a magnetic mode that is well-defined at the magnetic and structural Brillouin zone centers, but which merges with the electronic continuum in between these high symmetry points and which decays upon heating concurrent with a decrease in the material's resistivity. We show that a bilayer Hubbard model, in which electron-hole pairs are bound by exchange interactions, consistently explains all the electronic and magnetic properties of Sr3 Ir2 O7 indicating that this material is a realization of the long-predicted antiferromagnetic excitonic insulator phase., (© 2022. The Author(s).)- Published
- 2022
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21. Enhanced antibacterial efficacy and mechanism of octyl gallate/beta-cyclodextrins against Pseudomonas fluorescens and Vibrio parahaemolyticus and incorporated electrospun nanofibers for Chinese giant salamander fillets preservation.
- Author
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Shi YG, Li DH, Kong YM, Zhang RR, Gu Q, Hu MX, Tian SY, and Jin WG
- Subjects
- Animals, Anti-Bacterial Agents pharmacology, China, Gallic Acid analogs & derivatives, Spectroscopy, Fourier Transform Infrared, Urodela, Nanofibers, Pseudomonas fluorescens, Vibrio parahaemolyticus, beta-Cyclodextrins pharmacology
- Abstract
A series of alkyl gallates were evaluated for the antibacterial activity against two common Gram-negative foodborne bacteria (Pseudomonas fluorescens and Vibrio parahaemolyticus) associated with seafood. The length of the alkyl chain plays a pivotal role in eliciting their antibacterial activities and octyl gallate (OG) exerted an excellent inhibitory efficacy. To extend the aqueous solubility, stability, and bactericidal properties of octyl gallate (OG), an inclusion complex between OG and β-cyclodextrin (βCD), OG/βCD, was prepared and identified with various methods including X-ray diffraction (XRD), differential scanning calorimeter (DSC) and Fourier transform infrared spectroscopy (FTIR). Furthermore, the enhanced inhibitory effect and potential antibacterial mechanism of OG/βCD against two Gram-negative and Gram-positive foodborne bacteria were comprehensively investigated. The results show that OG/βCD could function against bacteria through effectively damaging the membrane, permeating into cells, and then disturbing the activity of the respiratory electron transport chain to cause the production of high-level intracellular hydroxyl radicals. Moreover, the reinforced OG/βCD-incorporated polylactic acid (PLA) nanofibers were fabricated using the electrospinning technique as food packaging to extend the Chinese giant salamander fillet's shelf life at 4 °C. This research highlights the antibacterial effectiveness of OG/βCD in aqueous media, which can be used as a safe multi-functionalized food additive combined with the benefits of electrospun nanofibers to extend the Chinese giant salamander fillets shelf life by 15 d at 4 °C., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2022
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22. New Horizons in Microbiological Food Safety: Ultraefficient Photodynamic Inactivation Based on a Gallic Acid Derivative and UV-A Light and Its Application with Electrospun Cyclodextrin Nanofibers.
- Author
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Shi YG, Zhu CM, Li DH, Shi ZY, Gu Q, Chen YW, Wang JQ, Ettelaie R, and Chen JS
- Subjects
- Escherichia coli, Gallic Acid pharmacology, Staphylococcus aureus, Ultraviolet Rays, Cyclodextrins, Nanofibers
- Abstract
An excellent bactericidal effect of octyl gallate (OG)-mediated photodynamic inactivation (PDI) against foodborne pathogens ( Escherichia coli and Staphylococcus aureus ) was evaluated in relation to the mode of action. UV-A irradiation (wavelength, 365 nm; irradiance, 8.254 ± 0.18 mW/cm
2 ) of the bacterial suspension containing 0.15 mM OG could lead to a >5-log reduction of viable cell counts within 30 min for E. coli and only 5 min for S. aureus . Reactive oxygen species (ROS) formation was considered the main reason for the bactericidal effect of OG + UV-A light treatment because toxic ROS induced by OG-mediated PDI could attack the cellular wall, proteins, and DNA of microbes. Moreover, the bactericidal effect, as well as the yields of ROS, depended on OG concentrations, irradiation time, and laser output power. Furthermore, we prepared an edible photodynamic antimicrobial membrane comprising electrospun cyclodextrin nanofibers (NFs) by embedding OG. The resultant OG/HPβCD NFs (273.6 μg/mL) under UV-A irradiation for 30 min (14.58 J/cm) could cause a great reduction (>5-log) of viable bacterial counts of E. coli . The in situ photodynamic antibacterial activity of OG/HPβCD NF-based packaging was evaluated during the Chinese giant salamander storage. Overall, this research highlights the dual functionalities (antibacterial and photodynamic properties) of OG as both an antibacterial agent and photosensitizer and the effectiveness of electrospun NFs containing OG as an active antibacterial packaging material for food preservation upon UV light illumination.- Published
- 2021
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23. Proliferation of Bifidobacterium L80 under different proportions of milk protein hydrolysate.
- Author
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Wang B, Yang Y, Bian X, Guan HN, Liu LL, Li XX, Guo QQ, Piekoszewski W, Chen FL, Wu N, Ma ZQ, Shi YG, and Zhang N
- Subjects
- Animals, Caseins chemistry, Humans, Infant Formula chemistry, Milk Proteins chemistry, Protein Hydrolysates chemistry, Whey Proteins chemistry, Bifidobacterium growth & development, Bifidobacterium metabolism, Caseins metabolism, Intestines microbiology, Milk Proteins metabolism, Protein Hydrolysates metabolism, Whey Proteins metabolism
- Abstract
The intestinal microecological environment is critical to an infant's growth. For those infants consuming milk power, it is very important to improve the intestinal microecological environment to promote the healthy growth of infants. In this paper, Milk protein hydrolysate (MPH), consisting of different proportions of proteins and small molecule peptides (5:5, 4:6, 3:7, 2:8, 1:9) were added to infant formula powder (IFP). The effects of MFP-enriched IFP addition on proliferation and metabolism of Bifidobacterium L80 were studied. Compared with MPH-free IFP, MFP-enriched IFP with 1:9 of proteins to small molecule peptides significantly enhanced the proliferation of Bifidobacterium L80, resulting in higher cell density, greater viable counts and higher titratable acidity. MFP-enriched IFP increased the content of seven organic acids and H
2 O2 in the system, and improved the antibacterial activity to E. coli BL21. This study suggested that MPH could be an effective addition to infant formula powder to promote the growth of Bifidobacterium, so to improve the intestinal health of infants., (© 2021. The Author(s).)- Published
- 2021
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24. On the mechanism behind enhanced antibacterial activity of alkyl gallate esters against foodborne pathogens and its application in Chinese icefish preservation.
- Author
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Shi YG, Zhang RR, Zhu CM, Liang XR, Ettelaie R, Jiang L, and Lin S
- Subjects
- Animals, China, Escherichia coli drug effects, Escherichia coli growth & development, Escherichia coli metabolism, Fishes microbiology, Food Preservation instrumentation, Gallic Acid pharmacology, Microbial Sensitivity Tests, Oxidative Stress drug effects, Anti-Bacterial Agents pharmacology, Esters pharmacology, Food Preservation methods, Food Preservatives pharmacology, Gallic Acid analogs & derivatives
- Abstract
The objective of this study was to investigate antibacterial activities and action mode of alkyl gallates against three food-related bacteria. Results show that the length of the alkyl chain plays a critical role in eliciting their antibacterial activities and octyl gallate (GAC8) exhibited an outstanding bactericidal effect against these strains. A possible bactericidal mechanism of GAC8 against E. coli was fully elucidated by analyzing associated changes in cellular functions of E. coli, including assessments of membrane modification and intracellular oxidation state. Our data strongly suggested that GAC8 functions outside and inside the bacterial membrane and causes increased intracellular reactive oxygen species (hydroxyl radicals) and subsequent oxidative damage. We demonstrated that the hydroxyl radical formation induced by GAC8 is the end product of an oxidative damage cellular death pathway involving a transient depletion of NADH, the tricarboxylic acid cycle, intrinsic redox cycling activities, and stimulation of the Fenton reaction. Also, chitosan-based edible films containing GAC8 have unique superiorities for icefish preservation at 4 °C. This research highlights the effectiveness of GAC8 as an attractive antibacterial, which possesses both antioxidant and antibacterial activities and can be used as a multifunctional food additive combined with the benefit of active packaging for food preservations., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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25. Religious Perspectives on Precision Medicine in Singapore.
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Toh HJ, Ballantyne A, Ong SAK, Sankaran C, Tay HY, Singh M, Zaidi R, Chia R, Singh S, Samachittananda S, Shi YG, Tan Z, and Lysaght T
- Abstract
Precision medicine (PM) aims to revolutionise healthcare, but little is known about the role religion and spirituality might play in the ethical discourse about PM. This Perspective reports the outcomes of a knowledge exchange fora with religious authorities in Singapore about data sharing for PM. While the exchange did not identify any foundational religious objections to PM, ethical concerns were raised about the possibility for private industry to profiteer from social resources and the potential for genetic discrimination by private health insurers. According to religious authorities in Singapore, sharing PM data with private industry will require a clear public benefit and robust data governance that incorporates principles of transparency, accountability and oversight., Supplementary Information: The online version contains supplementary material available at 10.1007/s41649-021-00180-4., (© The Author(s) 2021.)
- Published
- 2021
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26. HS-GC-IMS with PCA to analyze volatile flavor compounds across different production stages of fermented soybean whey tofu.
- Author
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Yang Y, Wang B, Fu Y, Shi YG, Chen FL, Guan HN, Liu LL, Zhang CY, Zhu PY, Liu Y, and Zhang N
- Subjects
- Chromatography, Gas, Fermentation, Ion Mobility Spectrometry, Principal Component Analysis, Glycine max metabolism, Volatile Organic Compounds chemistry, Soy Foods analysis, Glycine max chemistry, Volatile Organic Compounds analysis
- Abstract
The variations in flavor substances across the different stages of fermented soybean whey tofu (FSWT) production were analyzed by headspace-gas chromatography-ion mobility spectrometry (HS-GC-IMS) combined with principal component analysis (PCA). The results revealed 24 representative flavor compounds in the samples across all production stages. After heating, the signal intensity of hexanal, 1-octen-3-ol, heptanal, and (E)-2-hexenol, which are unpleasant flavor substances found in raw soymilk, weakened, whereas those of some aroma substances increased. Furthermore, fermented flavor compounds, namely, 2-heptanone, 2-pentylfuran, pentanal, and 2,3-butanedione, were produced after the addition of fermented soybean whey as a coagulant. A PCA based on the signal intensity of the detected volatile compounds revealed effective differentiation of samples from different stages into comparatively independent spaces. These results showed that the flavor fingerprints of the samples from different stages of FSWT production can be successfully built using HS-GC-IMS and PCA based on the detected volatile compounds., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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27. Antimicrobial mechanism of alkyl gallates against Escherichia coli and Staphylococcus aureus and its combined effect with electrospun nanofibers on Chinese Taihu icefish preservation.
- Author
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Shi YG, Zhang RR, Zhu CM, Xu MF, Gu Q, Ettelaie R, Lin S, Wang YF, and Leng XY
- Subjects
- Animals, Anti-Bacterial Agents chemistry, Anti-Bacterial Agents pharmacology, Gallic Acid chemistry, Gallic Acid pharmacology, Microbial Sensitivity Tests, Electricity, Escherichia coli drug effects, Gallic Acid analogs & derivatives, Nanofibers chemistry, Perciformes microbiology, Staphylococcus aureus drug effects
- Abstract
The objective of this study was to investigate the antibacterial activity and potential mechanism of alkyl gallates against Escherichia coli and Staphylococcus aureus. Results show that the length of the alkyl chain plays a pivotal role in eliciting the activity and octyl gallate (OG) exerted excellent bactericidal activity through a multiple bactericidal mechanism. OG functions against both bacteria through damaging bacterial cell wall integrity, permeating into cells and then interacting with DNA, as well as disturbing the activity of the respiratory electron transport chain to induce a high-level toxic ROS (hydroxyl radicals) generation and up-regulation of the ROS genes. Also, electrospun nanofibers with OG have unique superiorities for maintaining the freshness of the icefish (4 °C). This research not only provides a more in-depth understanding of the interaction between OG and microorganisms but also highlights the great promise of using OG as a safe multi-functionalized food additive for food preservations., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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28. TET2 Inhibits PD-L1 Gene Expression in Breast Cancer Cells through Histone Deacetylation.
- Author
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Shen Y, Liu L, Wang M, Xu B, Lyu R, Shi YG, and Tan L
- Abstract
Activation of PD-1/PD-L1 checkpoint is a critical step for the immune evasion of malignant tumors including breast cancer. However, the epigenetic mechanism underlying the aberrant expression of PD-L1 in breast cancer cells remains poorly understood. To investigate the role of TET2 in the regulation of PD-L1 gene expression, quantitative reverse transcription PCR (RT-qPCR), Western blotting, chromatin immunoprecipitation (ChIP) assay and MeDIP/hMeDIP-qPCR were performed on MCF7 and MDA-MB-231 human breast cancer cells. Here, we reported that TET2 depletion upregulated PD-L1 gene expression in MCF7 cells. Conversely, ectopic expression of TET2 inhibited PD-L1 gene expression in MDA-MB-231 cells. Mechanistically, TET2 protein recruits histone deacetylases (HDACs) to PD-L1 gene promoter and orchestrates a repressive chromatin structure to suppress PD-L1 gene transcription, which is likely independent of DNA demethylation. Consistently, treatment with HDAC inhibitors upregulated PD-L1 gene expression in wild-type (WT) but not TET2 KO MCF7 cells. Furthermore, analysis of the CCLE and TCGA data showed a negative correlation between TET2 and PD-L1 expression in breast cancer. Taken together, our results identify a new epigenetic regulatory mechanism of PD-L1 gene transcription, linking the catalytic activity-independent role of TET2 to the anti-tumor immunity in breast cancer.
- Published
- 2021
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- View/download PDF
29. Antimicrobial effect and mechanism of non-antibiotic alkyl gallates against Pseudomonas fluorescens on the surface of Russian sturgeon (Acipenser gueldenstaedti).
- Author
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Zhang RR, Shi YG, Gu Q, Fang M, Chen YW, Fang S, Dang YL, and Chen JS
- Subjects
- Animals, Anti-Bacterial Agents chemistry, Cell Membrane drug effects, Cell Membrane metabolism, Chitosan chemistry, Chitosan pharmacology, Edible Films, Energy Metabolism drug effects, Gallic Acid analogs & derivatives, Gallic Acid pharmacology, Pseudomonas fluorescens growth & development, Pseudomonas fluorescens isolation & purification, Pseudomonas fluorescens metabolism, Anti-Bacterial Agents pharmacology, Fishes microbiology, Food Preservation methods, Pseudomonas fluorescens drug effects
- Abstract
Since Pseudomonas fluorescens is the main microorganism causing severe spoilage in refrigerated aquatic products, the searching for non-antibiotic antibacterial agents effective against it continues to receive increasing interest. This study aimed to investigate the antibacterial effects and mechanisms of alkyl gallic esters against P. fluorescens isolated from the Russian sturgeon (Acipenser gueldenstaedti), as well as the effectiveness in combination with chitosan films on the preservation of sturgeon meats at 4 °C. Our data shows that the alkyl chain length plays a significant role in eliciting their antibacterial activities and octyl gallate (GAC8) exhibited an outstanding inhibitory efficacy. GAC8 can rapidly enter into the membrane lipid bilayer portion to disorder the membrane, and further inhibit the growth of the P. fluorescens through interfering both tricarboxylic acid cycle related to energy supply and amino acid metabolism associated with cell membranes, suppressing oxygen consumption and disturbing the respiration chain. Moreover, the alteration in membrane fatty acids indicated that GAC8 could disrupt the composition of cell membrane fatty acids, rendering the bacteria more sensitive to the antibacterial. The SEM results also substantiate the damage of the structure of the bacterial membrane caused by GAC8. Additionally, the edible chitosan-based films incorporated with GAC8 showed the enhanced antibacterial efficacy to remarkably extend the shelf life of Russian sturgeon. Overall, our findings not only provide new insight into the mode of action of GAC8 against P. fluorescens but also demonstrate composite films containing GAC8, as a kind of safe and antibacterial material, have a great promise for application in food preservations., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2021
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30. METTL3 regulates heterochromatin in mouse embryonic stem cells.
- Author
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Xu W, Li J, He C, Wen J, Ma H, Rong B, Diao J, Wang L, Wang J, Wu F, Tan L, Shi YG, Shi Y, and Shen H
- Subjects
- Animals, Endogenous Retroviruses genetics, Gene Expression Regulation, Genes, Intracisternal A-Particle genetics, Histone-Lysine N-Methyltransferase metabolism, Histones chemistry, Histones metabolism, Mice, Tripartite Motif-Containing Protein 28 metabolism, Chromatin Assembly and Disassembly, Heterochromatin genetics, Heterochromatin metabolism, Methyltransferases metabolism, Mouse Embryonic Stem Cells metabolism
- Abstract
METTL3 (methyltransferase-like 3) mediates the N
6 -methyladenosine (m6 A) methylation of mRNA, which affects the stability of mRNA and its translation into protein1 . METTL3 also binds chromatin2-4 , but the role of METTL3 and m6 A methylation in chromatin is not fully understood. Here we show that METTL3 regulates mouse embryonic stem-cell heterochromatin, the integrity of which is critical for silencing retroviral elements and for mammalian development5 . METTL3 predominantly localizes to the intracisternal A particle (IAP)-type family of endogenous retroviruses. Knockout of Mettl3 impairs the deposition of multiple heterochromatin marks onto METTL3-targeted IAPs, and upregulates IAP transcription, suggesting that METTL3 is important for the integrity of IAP heterochromatin. We provide further evidence that RNA transcripts derived from METTL3-bound IAPs are associated with chromatin and are m6 A-methylated. These m6 A-marked transcripts are bound by the m6 A reader YTHDC1, which interacts with METTL3 and in turn promotes the association of METTL3 with chromatin. METTL3 also interacts physically with the histone 3 lysine 9 (H3K9) tri-methyltransferase SETDB1 and its cofactor TRIM28, and is important for their localization to IAPs. Our findings demonstrate that METTL3-catalysed m6 A modification of RNA is important for the integrity of IAP heterochromatin in mouse embryonic stem cells, revealing a mechanism of heterochromatin regulation in mammals.- Published
- 2021
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31. The influence of soy protein hydrolysate (SPH) addition to infant formula powder on Streptococcus thermophilus proliferation and metabolism.
- Author
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Sun ZH, Yao MJ, Bian X, Guo QQ, Guan HN, Yang Y, Wang B, Shi YG, Piekoszewski W, Yang XW, and Zhang N
- Subjects
- Animals, Cattle, Cell Proliferation, Female, Humans, Hydrogen Peroxide, Infant, Powders, Protein Hydrolysates, Streptococcus thermophilus, Infant Formula, Milk Hypersensitivity
- Abstract
Nowadays, more and more infants are getting allergic to cow's milk protein, so it is urgent to search for infant formula powder with milk protein alternatives. In the present work, soy protein hydrolysate (SPH) was added to protein-free infant formula powder and the effects of SPH addition on proliferation and metabolism of Streptococcus thermophilus were studied. Compared with commercially available infant formula powder (CK) and protein-free milk powder (BK), the infant formula powder with 20% SPH significantly enhanced the proliferation of S. thermophilus in MRS medium, resulting in a higher cell density and greater viable counts. Moreover, the influence of SPH on the metabolism of S. thermophilus was investigated by analyzing the content of seven organic acids and H
2 O2 in the medium. The higher content of organic acids and H2 O2 is consistent with the stronger antibacterial activity to Escherichia coli. As a consequence, the addition of SPH to infant formula powder can effectively promote the growth of probiotics and SPH may be a promising protein alternative in the infant formula powder., (Copyright © 2021 Elsevier Ltd. All rights reserved.)- Published
- 2021
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32. Unconventional Transverse Transport above and below the Magnetic Transition Temperature in Weyl Semimetal EuCd_{2}As_{2}.
- Author
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Xu Y, Das L, Ma JZ, Yi CJ, Nie SM, Shi YG, Tiwari A, Tsirkin SS, Neupert T, Medarde M, Shi M, Chang J, and Shang T
- Abstract
As exemplified by the growing interest in the quantum anomalous Hall effect, the research on topology as an organizing principle of quantum matter is greatly enriched from the interplay with magnetism. In this vein, we present a combined electrical and thermoelectrical transport study on the magnetic Weyl semimetal EuCd_{2}As_{2}. Unconventional contribution to the anomalous Hall and anomalous Nernst effects were observed both above and below the magnetic transition temperature of EuCd_{2}As_{2}, indicating the existence of significant Berry curvature. EuCd_{2}As_{2} represents a rare case in which this unconventional transverse transport emerges both above and below the magnetic transition temperature in the same material. The transport properties evolve with temperature and field in the antiferromagnetic phase in a different manner than in the paramagnetic phase, suggesting different mechanisms to their origin. Our results indicate EuCd_{2}As_{2} is a fertile playground for investigating the interplay between magnetism and topology, and potentially a plethora of topologically nontrivial phases rooted in this interplay.
- Published
- 2021
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33. The association between monocytic myeloid-derived suppressor cells levels and the anti-tumor efficacy of anti-PD-1 therapy in NSCLC patients.
- Author
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Feng J, Chen S, Li S, Wu B, Lu J, Tan L, Li J, Song Y, Shi G, Shi YG, and Jiang J
- Abstract
Monocytic myeloid-derived suppressor cells (M-MDSCs), granulocytic MDSC (G-MDSCs) and regulatory T cells (Tregs) inhibit adaptive anti-tumor immunity and undermine the efficacy of anti-PD-1 therapy. However, the impact of anti-PD-1 treatment on these immunosuppressive cells has not been clearly defined in non-small cell lung cancer (NSCLC). In this retrospective study, 27 advanced NSCLC patients were divided into partial response (PR), stable disease (SD), and progressive disease (PD) groups. The impact of anti-PD-1 therapy on circulating Tregs, G-MDSCs, and M-MDSCs was assessed by flow cytometer. Here, we found that anti-PD-1 treatment boosted circulating Tregs levels, which presented the most remarkable augment during the first two therapeutic cycles, in NSCLC patients. In contrast, anti-PD-1 therapy did not overall change G-MDSCs and M-MDSCs levels. However, the PR group had a higher baseline level of M-MDSCs, which exhibited a significant decrease after the first cycle of anti-PD-1 treatment. Besides, M-MDSCs levels in the PR group were maintained at a low level in the following therapeutic cycles. Consistently, Tregs levels robustly increased in the syngeneic tumor model after anti-mouse PD-1 Ab treatment. Accordingly, M-MDSCs neutralization by anti-mouse ly6c Ab enhanced the anti-tumor efficacy of anti-PD-1 therapy in mice. Finally, the decreased M-MDSCs levels were associated with the enhanced effector CD8
+ T cells expansion in the PR group and mice. In conclusion, anti-PD-1 therapy upregulates Tregs levels in NSCLC patients, and the M-MDSC levels are associated with the anti-tumor efficacy of anti-PD-1 treatment. Neutralization of M-MDSCs may be a promising option to augment anti-PD-1 therapy efficacy in NSCLC., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2020
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34. Effects of soy protein isolate hydrolysates on cholecystokinin released by rat intestinal mucosal cells and food intake in rats.
- Author
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Yang Y, Guo QQ, Guan HN, Piekoszewski W, Wang B, Liu LL, Shi YG, Ikeda S, Liu LJ, Kalenik T, and Zhang N
- Abstract
Soy protein isolate hydrolysates (SPIH) were prepared from soy protein isolate (SPI). Effects of SPIH on a satiety signal cholecystokinin (CCK) and feeding behavior in rats were investigated. SPIH induced more CCK release (164.66 ± 2.40 pg/mL) by rat intestinal mucosal cells than SPI (143.33 ± 3.71 pg/mL). Meal size (MS), intermeal interval (IMI), and satiety ratio (SR = MS/IMI) of rats received different daily doses of SPIH or dietary fiber were detected for 40 days. A 100 mg/kg dose of SPIH resulted in a greater SR than an identical dose of dietary fiber, while a 300 mg/kg dose resulted in a less MS and IMI. A 500 mg/kg dose of SPIH had similar effects to the same dose of dietary fiber on reducing MS, extending IMI, and increasing SR, but resulted in a significantly less body weight at the end of the experiment (318.15 ± 17.83 g) than the dietary fiber group (340.28 ± 6.15 g)., Competing Interests: Conflict of interestThe authors declare that they have non-financial interests., (© Association of Food Scientists & Technologists (India) 2020.)
- Published
- 2020
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35. Changes in food quality and microbial composition of Russian sturgeon (Acipenser gueldenstaedti) fillets treated with low temperature vacuum heating method during storage at 4 °C.
- Author
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Shen SK, Chen YW, Dong XP, Liu FJ, Cai WQ, Wei JL, Bai F, Shi YG, Li P, and Wang YR
- Subjects
- Animals, Russia, Temperature, Vacuum, Food Quality, Heating
- Abstract
Russian sturgeon is a high-quality cultured fish and traditional heating methods may lead to deterioration of its food quality. This study aimed to evaluate the food quality and microbial composition of sturgeon fillets by low temperature vacuum heating (LTVH) and storage at 4 °C. The treatments varied in temperature (50, 60, and 70 °C) and duration (15 and 30 min); samples treated by traditional heating (100 °C, 15 min) methods were included as controls. We found that LTVH could reduce the values of lightness (L*), yellowness (b*), and pH and increase the values of redness (a*), chewiness, and hardness, to promote food quality. The biogenic amine content declined with the increase in heating temperature and time, the histamine of most concern was low at the end of storage, the values of LTVH70-30 and TC was 33.12 ± 1.25 and 30.39 ± 0.86 mg/kg. The total viable count (TVC) and biogenic amines showed the same trend, and the finial TVC values of LTVH60-30, LTVH70-15, LTVH70-30 and TC were 6.72 ± 0.17, 6.33 ± 0.18, 6.18 ± 0.08 and 5.93 ± 0.16 log CFU/g, which did not exceed the limit value (7 log CFU/g), indicating that the biosafety risk was reduced. According to the high-throughput sequencing results, the microbial composition of LTVH samples showed a lesser abundance pseudomonads than that found in the control. Thus, LTVH technology could be used as an alternative to traditional heating treatment., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2020
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36. Chemical constituents from the thorns of Gleditsia sinensis and their cytotoxic activities.
- Author
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Zhang YB, Lam KH, Chen LF, Wan H, Wang GC, Lee KF, Yip CW, Liu KH, Leung PH, Chan HY, Shi YG, Zhao J, Lao LX, Li YL, Zhang YB, and Meng W
- Subjects
- Glycosides pharmacology, Humans, Molecular Structure, Plant Extracts, Antineoplastic Agents, Gleditsia
- Abstract
A new aromatic glycoside ( 1 ) and a new natural product, neolignan ( 2 ), along with twenty-three known compounds ( 3-25 ), were isolated from the thorns of Gleditsia sinensis . According to the spectroscopic analyses (IR, UV, HRESIMS, NMR and ECD), the structures of isolates were elucidated. Herein, compounds 4 , 6-8 , 10-13 , 15 , 16 , 18 , 20 , 23 were isolated from the plant of G. sinensis for the first time. Moreover, compounds 4, 6 , 15 and 24 showed cytotoxic effects on human ovarian cancer (SKOV-3) cells with IC
50 values of 24.83 ± 4.90, 48.86 ± 9.11, 80.13 ± 5.62, 15.38 ± 2.21 μM, respectively. [Formula: see text].- Published
- 2020
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37. TET2 promotes anti-tumor immunity by governing G-MDSCs and CD8 + T-cell numbers.
- Author
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Li S, Feng J, Wu F, Cai J, Zhang X, Wang H, Fetahu IS, Iwanicki I, Ma D, Hu T, Liu H, Wang B, Shi G, Tan L, and Shi YG
- Subjects
- Adaptive Immunity, Animals, CD8-Positive T-Lymphocytes, Cell Count, DNA-Binding Proteins genetics, Dioxygenases, Mice, Proto-Oncogene Proteins genetics, Myeloid-Derived Suppressor Cells, Neoplasms genetics
- Abstract
The host immune response is a fundamental mechanism for attenuating cancer progression. Here we report a role for the DNA demethylase and tumor suppressor TET2 in host anti-tumor immunity. Deletion of Tet2 in mice elevates IL-6 levels upon tumor challenge. Elevated IL-6 stimulates immunosuppressive granulocytic myeloid-derived suppressor cells (G-MDSCs), which in turn reduce CD8
+ T cells upon tumor challenge. Consequently, systematic knockout of Tet2 in mice leads to accelerated syngeneic tumor growth, which is constrained by anti-PD-1 blockade. Removal of G-MDSCs by the anti-mouse Ly6g antibodies restores CD8+ T-cell numbers in Tet2-/- mice and reboots their anti-tumor activity. Importantly, anti-IL-6 antibody treatment blocks the expansion of G-MDSCs and inhibits syngeneic tumor growth. Collectively, these findings reveal a TET2-mediated IL-6/G-MDSCs/CD8+ T-cell immune response cascade that safeguards host adaptive anti-tumor immunity, offering a cell non-autonomous mechanism of TET2 for tumor suppression., (© 2020 The Authors.)- Published
- 2020
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38. Effect of low-temperature vacuum heating on physicochemical properties of sturgeon (Acipenser gueldenstaedti) fillets.
- Author
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Cai WQ, Wei JL, Chen YW, Dong XP, Zhang JN, Bai F, Zheng LL, and Shi YG
- Subjects
- Animals, Cooking instrumentation, Fishes, Hardness, Humans, Meat analysis, Taste, Temperature, Vacuum, Cooking methods, Fish Products analysis, Seafood analysis
- Abstract
Background: Sturgeon is popular for its nutritious value and its taste. However, sturgeon fillets are traditionally heated in 100 °C boiling water, resulting in unfavorable taste and with a negative effect on the quality. This study considered the effect of combinations of vacuum and low-temperature treatments (LTVH groups) on sturgeon fillets compared with the traditional heat treatment (TC groups)., Results: The results show that the LTVH groups had lower cooking-loss rates. All LTVH fillets were changed to a white color, and appeared 'done', as did the TC fillets. The LTVH and TC methods gave rise to significant differences in texture: the springiness of the LTVH groups decreased with heating time, and decreased rapidly in the TC groups (P < 0.05); hardness and chewiness increased with time and temperature in the LTVH groups, but decreased in the TC groups. More compact and denser gaps were observed in LTVH70 groups and TC groups. Less protein and lipid oxidation was evident in LTVH groups, including more myofibril protein solubility; there was less protein aggregation, fewer thiobarbituric acid reactive substance, and Schiff base., Conclusion: Vacuum and low-temperature treated sturgeon fillets can be served as a good alternative. This treatment caused slight tissue damage and less proteolysis and lipid oxidation, which is beneficial for the quality of aquatic products., (© 2020 Society of Chemical Industry.)
- Published
- 2020
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39. The fusiform gyrus exhibits an epigenetic signature for Alzheimer's disease.
- Author
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Ma D, Fetahu IS, Wang M, Fang R, Li J, Liu H, Gramyk T, Iwanicki I, Gu S, Xu W, Tan L, Wu F, and Shi YG
- Subjects
- Humans, Alzheimer Disease genetics, Alzheimer Disease physiopathology, Epigenesis, Genetic genetics, Gene Expression genetics, Temporal Lobe physiopathology
- Abstract
Background: Alzheimer's disease (AD) is the most common type of dementia, and patients with advanced AD frequently lose the ability to identify family members. The fusiform gyrus (FUS) of the brain is critical in facial recognition. However, AD etiology in the FUS of AD patients is poorly understood. New analytical strategies are needed to reveal the genetic and epigenetic basis of AD in FUS., Results: A complex of new analytical paradigms that integrates an array of transcriptomes and methylomes of normal controls, AD patients, and "AD-in-dish" models were used to identify genetic and epigenetic signatures of AD in FUS. Here we identified changes in gene expression that are specific to the FUS in brains of AD patients. These changes are closely linked to key genes in the AD network. Profiling of the methylome (5mC/5hmC/5fC/5caC) at base resolution identified 5 signature genes (COL2A1, CAPN3, COL14A1, STAT5A, SPOCK3) that exhibit perturbed expression, specifically in the FUS and display altered DNA methylome profiles that are common across AD-associated brain regions. Moreover, we demonstrate proof-of-principle that AD-associated methylome changes in these genes effectively predict the disease prognosis with enhanced sensitivity compared to presently used clinical criteria., Conclusions: This study identified a set of previously unexplored FUS-specific AD genes and their epigenetic characteristics, which may provide new insights into the molecular pathology of AD, attributing the genetic and epigenetic basis of FUS to AD development.
- Published
- 2020
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40. Correction to: Platelets promote breast cancer cell MCF-7 metastasis by direct interaction: surface integrin α2β1-contacting-mediated activation of Wnt-β-catenin pathway.
- Author
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Zuo XX, Yang Y, Zhang Y, Zhang ZG, Wang XF, and Shi YG
- Abstract
An amendment to this paper has been published and can be accessed via the original article.
- Published
- 2020
- Full Text
- View/download PDF
41. RACK7 recognizes H3.3G34R mutation to suppress expression of MHC class II complex components and their delivery pathway in pediatric glioblastoma.
- Author
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Jiao F, Li Z, He C, Xu W, Yang G, Liu T, Shen H, Cai J, Anastas JN, Mao Y, Yu Y, Lan F, Shi YG, Jones C, Xu Y, Baker SJ, Shi Y, and Guo R
- Subjects
- Child, Humans, Mutation, Brain Neoplasms genetics, Glioblastoma genetics, Histocompatibility Antigens Class II genetics, Histocompatibility Antigens Class II metabolism, Histones genetics, Histones metabolism, Tumor Suppressor Proteins genetics
- Abstract
Histone H3 point mutations have been identified in incurable pediatric brain cancers, but the mechanisms through which these mutations drive tumorigenesis are incompletely understood. Here, we provide evidence that RACK7 (ZMYND8) recognizes the histone H3.3 patient mutation (H3.3G34R) in vitro and in vivo. We show that RACK7 binding to H3.3G34R suppresses transcription of CIITA , which is the master regulator of MHC (major histocompatibility complex) class II molecules and genes involved in vesicular transport of MHC class II molecules to the cell surface, resulting in suppression of MHC class II molecule expression and transport. CRISPR-based knock-in correction of the H3.3G34R mutation in human pediatric glioblastoma (pGBM) cells significantly reduces overall RACK7 chromatin binding and derepresses the same set of genes as does knocking out RACK7 in the H3.3G34R pGBM cells. By demonstrating that H3.3G34R and RACK7 work together, our findings suggest a potential molecular mechanism by which H3.3G34R promotes cancer., (Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).)
- Published
- 2020
- Full Text
- View/download PDF
42. Author Correction: Universal mechanical exfoliation of large-area 2D crystals.
- Author
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Huang Y, Pan YH, Yang R, Bao LH, Meng L, Luo HL, Cai YQ, Liu GD, Zhao WJ, Zhou Z, Wu LM, Zhu ZL, Huang M, Liu LW, Liu L, Cheng P, Wu KH, Tian SB, Gu CZ, Shi YG, Guo YF, Cheng ZG, Hu JP, Zhao L, Yang GH, Sutter E, Sutter P, Wang YL, Ji W, Zhou XJ, and Gao HJ
- Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
- Published
- 2020
- Full Text
- View/download PDF
43. Nono deficiency compromises TET1 chromatin association and impedes neuronal differentiation of mouse embryonic stem cells.
- Author
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Li W, Karwacki-Neisius V, Ma C, Tan L, Shi Y, Wu F, and Shi YG
- Subjects
- 5-Methylcytosine analogs & derivatives, 5-Methylcytosine metabolism, Animals, Cells, Cultured, DNA-Binding Proteins chemistry, DNA-Binding Proteins genetics, Gene Expression Regulation, Gene Knockout Techniques, Mice, Proto-Oncogene Proteins chemistry, RNA-Binding Proteins chemistry, RNA-Binding Proteins genetics, RNA-Binding Proteins metabolism, RNA-Seq, Transcription, Genetic, Chromatin enzymology, DNA-Binding Proteins metabolism, DNA-Binding Proteins physiology, Mouse Embryonic Stem Cells metabolism, Neurogenesis genetics, Proto-Oncogene Proteins metabolism, RNA-Binding Proteins physiology
- Abstract
NONO is a DNA/RNA-binding protein, which plays a critical regulatory role during cell stage transitions of mouse embryonic stem cells (mESCs). However, its function in neuronal lineage commitment and the molecular mechanisms of its action in such processes are largely unknown. Here we report that NONO plays a key role during neuronal differentiation of mESCs. Nono deletion impedes neuronal lineage commitment largely due to a failure of up-regulation of specific genes critical for neuronal differentiation. Many of the NONO regulated genes are also DNA demethylase TET1 targeted genes. Importantly, re-introducing wild type NONO to the Nono KO cells, not only restores the normal expression of the majority of NONO/TET1 coregulated genes but also rescues the defective neuronal differentiation of Nono-deficient mESCs. Mechanistically, our data shows that NONO directly interacts with TET1 via its DNA binding domain and recruits TET1 to genomic loci to regulate 5-hydroxymethylcytosine levels. Nono deletion leads to a significant dissociation of TET1 from chromatin and dysregulation of DNA hydroxymethylation of neuronal genes. Taken together, our findings reveal a key role and an epigenetic mechanism of action of NONO in regulation of TET1-targeted neuronal genes, offering new functional and mechanistic understanding of NONO in stem cell functions, lineage commitment and specification., (© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2020
- Full Text
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44. Universal mechanical exfoliation of large-area 2D crystals.
- Author
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Huang Y, Pan YH, Yang R, Bao LH, Meng L, Luo HL, Cai YQ, Liu GD, Zhao WJ, Zhou Z, Wu LM, Zhu ZL, Huang M, Liu LW, Liu L, Cheng P, Wu KH, Tian SB, Gu CZ, Shi YG, Guo YF, Cheng ZG, Hu JP, Zhao L, Yang GH, Sutter E, Sutter P, Wang YL, Ji W, Zhou XJ, and Gao HJ
- Abstract
Two-dimensional materials provide extraordinary opportunities for exploring phenomena arising in atomically thin crystals. Beginning with the first isolation of graphene, mechanical exfoliation has been a key to provide high-quality two-dimensional materials, but despite improvements it is still limited in yield, lateral size and contamination. Here we introduce a contamination-free, one-step and universal Au-assisted mechanical exfoliation method and demonstrate its effectiveness by isolating 40 types of single-crystalline monolayers, including elemental two-dimensional crystals, metal-dichalcogenides, magnets and superconductors. Most of them are of millimeter-size and high-quality, as shown by transfer-free measurements of electron microscopy, photo spectroscopies and electrical transport. Large suspended two-dimensional crystals and heterojunctions were also prepared with high-yield. Enhanced adhesion between the crystals and the substrates enables such efficient exfoliation, for which we identify a gold-assisted exfoliation method that underpins a universal route for producing large-area monolayers and thus supports studies of fundamental properties and potential application of two-dimensional materials.
- Published
- 2020
- Full Text
- View/download PDF
45. Lipophilic ferulic acid derivatives protect PC12 cells against oxidative damage via modulating β-amyloid aggregation and activating Nrf2 enzymes.
- Author
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Wu Y, Shi YG, Zheng XL, Dang YL, Zhu CM, Zhang RR, Fu YY, Zhou TY, and Li JH
- Subjects
- Amyloid beta-Peptides metabolism, Animals, Coumaric Acids administration & dosage, Coumaric Acids pharmacology, Humans, Molecular Docking Simulation, NF-E2-Related Factor 2 metabolism, Neuroprotective Agents administration & dosage, Neuroprotective Agents pharmacology, Oxidative Stress drug effects, PC12 Cells drug effects, PC12 Cells metabolism, Rats, Alzheimer Disease drug therapy, Amyloid beta-Peptides drug effects, Coumaric Acids therapeutic use, Neuroprotective Agents therapeutic use
- Abstract
Ferulic acid (FA) has been shown to have a neuroprotective effect on Alzheimer's disease induced by amyloid-beta (Aβ) neurotoxicity. This work aims to ascertain the structure-activity relationship of FA and its alkyl esters (FAEs) for evaluating the antioxidant activities in PC12 cells and Aβ
1-42 aggregation inhibitory activities in vitro, as well as the signaling mechanisms against oxidative stress elicited by Aβ1-42 in PC12 cells. Our data showed that alterations in the subcellular localization and cytotoxicity of FAEs caused by the lipophilicity of FA were crucial when evaluating their antioxidant capacities. Pre-treating cells with butyl ferulate (FAC4) significantly attenuated Aβ1-42 -evoked intracellular ROS formation. Besides, FAC4 exhibited the highest Aβ1-42 aggregation inhibitory effectiveness. The molecular docking results showed that FAC4 binds to amide NH in Gln15 and Lys16 via a hydrogen bond. Notably, FAC4 could upregulate antioxidant defense systems by modulating the Keap1-Nrf2-ARE signaling pathway. Identification of the functions of FAEs could be useful in developing food supplements or drugs for treating AD.- Published
- 2020
- Full Text
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46. Binding to m 6 A RNA promotes YTHDF2-mediated phase separation.
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Wang J, Wang L, Diao J, Shi YG, Shi Y, Ma H, and Shen H
- Subjects
- Animals, Binding Sites, Cell Line, Humans, Mice, RNA-Binding Proteins chemistry, RNA, Messenger chemistry, RNA, Messenger metabolism, RNA-Binding Proteins metabolism
- Published
- 2020
- Full Text
- View/download PDF
47. Directional massless Dirac fermions in a layered van der Waals material with one-dimensional long-range order.
- Author
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Yang TY, Wan Q, Yan DY, Zhu Z, Wang ZW, Peng C, Huang YB, Yu R, Hu J, Mao ZQ, Li S, Yang SA, Zheng H, Jia J-, Shi YG, and Xu N
- Abstract
One or a few layers of van der Waals (vdW) materials are promising for applications in nanoscale electronics. Established properties include high mobility in graphene, a large direct gap in monolayer MoS
2 , the quantum spin Hall effect in monolayer WTe2 and so on. These exciting properties arise from electron quantum confinement in the two-dimensional limit. Here, we use angle-resolved photoemission spectroscopy to reveal directional massless Dirac fermions due to one-dimensional confinement of carriers in the layered vdW material NbSi0.45 Te2 . The one-dimensional directional massless Dirac fermions are protected by non-symmorphic symmetry, and emerge from a stripe-like structural modulation with long-range translational symmetry only along the stripe direction as we show using scanning tunnelling microscopy. Our work not only provides a playground for investigating further the properties of directional massless Dirac fermions, but also introduces a unique component with one-dimensional long-range order for engineering nano-electronic devices based on heterostructures of vdW materials.- Published
- 2020
- Full Text
- View/download PDF
48. Platelets promote breast cancer cell MCF-7 metastasis by direct interaction: surface integrin α2β1-contacting-mediated activation of Wnt-β-catenin pathway.
- Author
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Zuo XX, Yang Y, Zhang Y, Zhang ZG, Wang XF, and Shi YG
- Subjects
- Gene Silencing, Humans, Integrin alpha2beta1 deficiency, Integrin alpha2beta1 genetics, MCF-7 Cells, Neoplasm Metastasis, Smad3 Protein metabolism, Transcription, Genetic, Transforming Growth Factor beta1 genetics, Blood Platelets physiology, Breast Neoplasms pathology, Integrin alpha2beta1 metabolism, Wnt Signaling Pathway
- Abstract
Background: Integrin-mediated platelet-tumor cell contacting plays an important role in promoting epithelial-mesenchymal transition (EMT) transformation of tumor cells and cancer metastasis, but whether it occurs in breast cancer cells is not completely clear., Objective: The purpose of this study was to investigate the role of integrin α2β1 in platelet contacting to human breast cancer cell line MCF-7 and its effect on the EMT and the invasion of MCF-7 cells., Methods: Human platelets were activated by thrombin, and separated into pellets and releasates before the co-incubation with MCF-7 cells. Cell invasion was evaluated by transwell assay. The surface integrins on pellets and MCF-7 cells were inhibited by antibodies. The effect of integrin α2β1 on Wnt-β-catenin pathway was assessed by integrin α2β1-silencing and Wnt-β-catenin inhibitor XAV. The therapeutic effect of integrin α2β1-silencing was confirmed in the xenograft mouse model., Results: Pellets promote the invasion and EMT of MCF-7 cells via direct contacting of surface integrin α2β1. The integrin α2β1 contacting activates Wnt-β-catenin pathway and promotes the expression of EMT proteins in MCF-7 cells. The activated Wnt-β-catenin pathway also promotes the autocrine of TGF-β1 in MCF-7 cells. Both Wnt-β-catenin and TGF-β1/pSmad3 pathways promote the expression of EMT proteins. Integrin α2β1-silencing inhibits breast cancer metastasis in vivo., Conclusions: The direct interaction between platelets and tumor cells exerts its pro-metastatic function via surface integrin α2β1 contacting and Wnt-β-catenin activation. Integrin α2β1-silencing has the potential effect of inhibiting breast cancer metastasis.
- Published
- 2019
- Full Text
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49. Experimental evidence of anomalously large superconducting gap on topological surface state of β-Bi 2 Pd film.
- Author
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Guan JY, Kong L, Zhou LQ, Zhong YG, Li H, Liu HJ, Tang CY, Yan DY, Yang FZ, Huang YB, Shi YG, Qian T, Weng HM, Sun YJ, and Ding H
- Abstract
Connate topological superconductor (TSC) combines topological surface states with nodeless superconductivity in a single material, achieving effective p-wave pairing without interface complication. By combining angle-resolved photoemission spectroscopy and in-situ molecular beam epitaxy, we studied the momentum-resolved superconductivity in β-Bi
2 Pd film. We found that the superconducting gap of topological surface state (ΔTSS ∼ 3.8 meV) is anomalously enhanced from its bulk value (Δb ∼ 0.8 meV). The ratio of 2ΔTSS /kB Tc ∼ 16.3, is substantially larger than the BCS value. By measuring β-Bi2 Pd bulk single crystal as a comparison, we clearly observed the upward-shift of chemical potential in the film. In addition, a concomitant increasing of surface weight on the topological surface state was revealed by our first principle calculation, suggesting that the Dirac-fermion-mediated parity mixing may cause this anomalous superconducting enhancement. Our results establish β-Bi2 Pd film as a unique case of connate TSCs with a highly enhanced topological superconducting gap, which may stabilize Majorana zero modes at a higher temperature., (Copyright © 2019 Science China Press. Published by Elsevier B.V. All rights reserved.)- Published
- 2019
- Full Text
- View/download PDF
50. Pressure-induced enhancement of thermoelectric power factor in pristine and hole-doped SnSe crystals.
- Author
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Su N, Qin BC, Zhu KJ, Liu ZY, Shahi P, Sun JP, Wang BS, Sui Y, Shi YG, Zhao LD, and Cheng JG
- Abstract
We evaluate the influence of pressure on the thermoelectric power factors PF ≡ S
2 σ of pristine and Na-doped SnSe crystals by measuring their electrical conductivity σ ( T ) and Seebeck coefficient S ( T ) up to ∼22 kbar with a self-clamped piston-cylinder cell. For both cases, σ ( T ) is enhanced while S ( T ) reduced with increasing pressure as expected, but their imbalanced variations lead to a monotonic enhancement of PF under pressure. For pristine SnSe, σ (290 K) increases by ∼4 times from ∼10.1 to 38 S cm-1 , while S (290 K) decreases by only ∼12% from 474 to 415 μV K-1 , leading to about three-fold enhancement of PF from 2.24 to 6.61 μW cm-1 K-2 , which is very close to the optimal value of SnSe above the structural transition at ∼800 K at ambient pressure. In comparison, the PF of Na-doped SnSe at 290 K is enhanced moderately by ∼30% up to 20 kbar. In contrast, the PF of isostructural black phosphorus with a simple band structure was found to decrease under pressure. The comparison with black phosphorus indicates that the multi-valley valence band structure of SnSe is beneficial for the enhancement of PF by retaining a large Seebeck coefficient under pressure. Our results also provide experimental confirmation on the previous theoretical prediction that high pressure can be used to optimize the thermoelectric efficiency of SnSe., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2019
- Full Text
- View/download PDF
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