28 results on '"Sebek, Jan"'
Search Results
2. Assessment of thermochromic phantoms for characterizing microwave ablation devices.
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Zia, Ghina, Lintz, Amber, Hardin, Clay, Bottiglieri, Anna, Sebek, Jan, and Prakash, Punit
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Background and purpose: Thermochromic gel phantoms provide a controlled medium for visual assessment of thermal ablation device performance. However, there are limited studies reporting on the comparative assessment of ablation profiles assessed in thermochromic gel phantoms against those in ex vivo tissue. The objective of this study was to compare microwave ablation zones in a thermochromic tissue‐mimicking gel phantom and ex vivo bovine liver and to report on measurements of the temperature‐dependent dielectric and thermal properties of the phantom. Methods: Thermochromic polyacrylamide phantoms were fabricated following a previously reported protocol. Phantom samples were heated to temperatures in the range of 20°C–90°C in a temperature‐controlled water bath, and colorimetric analysis of images of the phantom taken after heating was used to develop a calibration between color changes and the temperature to which the phantom was heated. Using a custom, 2.45 GHz water‐cooled microwave ablation antenna, ablations were performed in fresh ex vivo liver and phantoms using 65 W applied for 5 min or 10 min (n = 3 samples in each medium for each power/time combination). Broadband (500 MHz–6 GHz) temperature‐dependent dielectric and thermal properties of the phantom were measured over the temperature range of 22°C–100°C. Results: Colorimetric analysis showed that the sharp change in gel phantom color commences at a temperature of 57°C. Short and long axes of the ablation zone in the phantom (as assessed by the 57°C isotherm) for 65 W, 5 min ablations were aligned with the extents of the ablation zone observed in ex vivo bovine liver. However, for the 65 W, 10 min setting, ablations in the phantom were on average 23.7% smaller in the short axis and 7.4 % smaller in the long axis than those observed in ex vivo liver. Measurements of the temperature‐dependent relative permittivity, thermal conductivity, and volumetric heat capacity of the phantom largely followed similar trends to published values for ex vivo liver tissue. Conclusion: Thermochromic tissue‐mimicking phantoms provides a controlled, and reproducible medium for comparative assessment of microwave ablation devices and energy delivery settings. However, ablation zone size and shapes in the thermochromic phantom do not accurately represent ablation sizes and shapes observed in ex vivo liver tissue for high energy delivery treatments (65 W, 10 min). One cause for this limitation is the difference in temperature‐dependent thermal and dielectric properties of the thermochromic phantom compared to ex vivo bovine liver tissue, as reported in the present study. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Directional Microwave Ablation: Experimental Evaluation of a 2.45-GHz Applicator in Ex Vivo and In Vivo Liver
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Pfannenstiel, Austin, Sebek, Jan, Fallahi, Hojjatollah, Beard, Warren L., Ganta, Charan K., Dupuy, Damian E., and Prakash, Punit
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- 2020
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4. Computational modeling of 915 MHz microwave ablation: Comparative assessment of temperature-dependent tissue dielectric models
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Deshazer, Garron, Hagmann, Mark, Merck, Derek, Sebek, Jan, Moore, Kent B., and Prakash, Punit
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- 2017
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5. Sublethal Hyperthermia Transiently Disrupts Cortisol Steroidogenesis in Adrenocortical Cells.
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Mullen, Nathan, Donlon, Padraig T, Sebek, Jan, Duffy, Katen, Cappiello, Grazia, Feely, Sarah, Warde, Kate M, Harhen, Brendan, Finn, David P, O'Shea, Paula M, Prakash, Punit, O'Halloran, Martin, and Dennedy, Michael C
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HYDROCORTISONE ,ADRENAL cortex ,HYPERALDOSTERONISM - Abstract
Primary aldosteronism is the most common cause of secondary hypertension. The first-line treatment adrenalectomy resects adrenal nodules and adjacent normal tissue, limiting suitability to those who present with unilateral disease. Use of thermal ablation represents an emerging approach as a possible minimally invasive therapy for unilateral and bilateral disease, to target and disrupt hypersecreting aldosterone-producing adenomas, while preserving adjacent normal adrenal cortex. To determine the extent of damage to adrenal cells upon exposure to hyperthermia, the steroidogenic adrenocortical cell lines H295R and HAC15 were treated with hyperthermia at temperatures between 37 and 50°C with the effects of hyperthermia on steroidogenesis evaluated following stimulation with forskolin and ANGII. Cell death, protein/mRNA expression of steroidogenic enzymes and damage markers (HSP70/90), and steroid secretion were analyzed immediately and 7 days after treatment. Following treatment with hyperthermia, 42°C and 45°C did not induce cell death and were deemed sublethal doses while ≥50°C caused excess cell death in adrenal cells. Sublethal hyperthermia (45°C) caused a significant reduction in cortisol secretion immediately following treatment while differentially affecting the expression of various steroidogenic enzymes, although recovery of steroidogenesis was evident 7 days after treatment. As such, sublethal hyperthermia, which occurs in the transitional zone during thermal ablation induces a short-lived, unsustained inhibition of cortisol steroidogenesis in adrenocortical cells in vitro. [ABSTRACT FROM AUTHOR]
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- 2023
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6. In Vitro Measurement and Mathematical Modeling of Thermally-Induced Injury in Pancreatic Cancer Cells.
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Chamani, Faraz, Pyle, Marla M., Shrestha, Tej B., Sebek, Jan, Bossmann, Stefan H., Basel, Matthew T., Sheth, Rahul A., and Prakash, Punit
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PANCREATIC tumors ,IN vitro studies ,THERMOTHERAPY ,FIBROBLASTS ,ANIMAL experimentation ,BURNS & scalds ,DYNAMICS ,CELL survival ,RESEARCH funding ,STATISTICAL models ,CELL lines ,MICE ,CELL death - Abstract
Simple Summary: Thermal therapies, the controlled heating of tissue, are a clinically accepted modality for the treatment of localized cancers and are under investigation as part of treatment strategies for pancreatic cancer. The bioeffects of heating varies as a function of intensity and duration of heating and can vary across tissue types. We report on the measurement of thermal injury parameters for pancreatic cancer cell lines in vitro and assess their suitability for predicting changes in cell viability following heating. The results of this study may contribute to research investigating the use of thermal therapies as part of pancreatic cancer treatment strategies, the development of modeling tools for predictive treatment planning of thermal therapies, and understanding the effects of other energy-based interventions that may involve perturbation of tissue temperature. Thermal therapies are under investigation as part of multi-modality strategies for the treatment of pancreatic cancer. In the present study, we determined the kinetics of thermal injury to pancreatic cancer cells in vitro and evaluated predictive models for thermal injury. Cell viability was measured in two murine pancreatic cancer cell lines (KPC, Pan02) and a normal fibroblast (STO) cell line following in vitro heating in the range 42.5–50 °C for 3–60 min. Based on measured viability data, the kinetic parameters of thermal injury were used to predict the extent of heat-induced damage. Of the three thermal injury models considered in this study, the Arrhenius model with time delay provided the most accurate prediction (root mean square error = 8.48%) for all cell lines. Pan02 and STO cells were the most resistant and susceptible to hyperthermia treatments, respectively. The presented data may contribute to studies investigating the use of thermal therapies as part of pancreatic cancer treatment strategies and inform the design of treatment planning strategies. [ABSTRACT FROM AUTHOR]
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- 2023
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7. Computational modeling of microwave ablation with thermal accelerants.
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Sebek, Jan, Park, William K. C., Geimer, Shireen, Van Citters, Douglas W., Farah, Alexandra, Dupuy, Damian E., Meaney, Paul M., and Prakash, Punit
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MICROWAVES , *ELECTRIC conductivity , *DIELECTRIC properties , *THERMAL properties , *LIVER - Abstract
To develop a computational model of microwave ablation (MWA) with a thermal accelerant gel and apply the model toward interpreting experimental observations in ex vivo bovine and in vivo porcine liver. A 3D coupled electromagnetic-heat transfer model was implemented to characterize thermal profiles within ex vivo bovine and in vivo porcine liver tissue during MWA with the HeatSYNC thermal accelerant. Measured temperature dependent dielectric and thermal properties of the HeatSYNC gel were applied within the model. Simulated extents of MWA zones and transient temperature profiles were compared against experimental measurements in ex vivo bovine liver. Model predictions of thermal profiles under in vivo conditions in porcine liver were used to analyze thermal ablations observed in prior experiments in porcine liver in vivo. Measured electrical conductivity of the HeatSYNC gel was ∼83% higher compared to liver at room temperature, with positive linear temperature dependency, indicating increased microwave absorption within HeatSYNC gel compared to tissue. In ex vivo bovine liver, model predicted ablation zone extents of (31.5 × 36) mm with the HeatSYNC, compared to (32.9 ± 2.6 × 40.2 ± 2.3) mm in experiments (volume differences 4 ± 4.1 cm3). Computational models under in vivo conditions in porcine liver suggest approximating the HeatSYNC gel spreading within liver tissue during ablations as a plausible explanation for larger ablation zones observed in prior in vivo studies. Computational models of MWA with thermal accelerants provide insight into the impact of accelerant on MWA, and with further development, could predict ablations with a variety of gel injection sites. [ABSTRACT FROM AUTHOR]
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- 2023
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8. System for delivering microwave ablation to subcutaneous tumors in small-animals under high-field MRI thermometry guidance.
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Sebek, Jan, Shrestha, Tej B., Basel, Matthew T., Chamani, Faraz, Zeinali, Nooshin, Mali, Ivina, Payne, Macy, Timmerman, Sarah A., Faridi, Pegah, Pyle, Marla, O’Halloran, Martin, Dennedy, M. Conall, Bossmann, Stefan H., and Prakash, Punit
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PROTON magnetic resonance , *THERMOMETRY , *MICROWAVES , *MAGNETIC resonance imaging , *TUMORS - Abstract
Purpose: Bio-effects following thermal treatments are a function of the achieved temperature profile in tissue, which can be estimated across tumor volumes with real-time MRI thermometry (MRIT). Here, we report on expansion of a previously developed small-animal microwave hyperthermia system integrated with MRIT for delivering thermal ablation to subcutaneously implanted tumors in mice. Methods: Computational models were employed to assess suitability of the 2.45 GHz microwave applicators for delivering ablation to subcutaneous tumor targets in mice. Phantoms and ex-vivo tissues were heated to temperatures in the range 47–67 °C with custom-made microwave applicators for validating MRIT with the proton resonance frequency shift method against fiberoptic thermometry. HAC15 tumors implanted in nude mice (n = 6) were ablated in vivo and monitored with MRIT in multiple planes. One day post ablation, animals were euthanized, and excised tumors were processed for viability assessment. Results: Average absolute error between temperatures from fiberoptic sensors and MRIT was 0.6 °C across all ex-vivo ablations. During in-vivo experiments, tumors with volumes ranging between 5.4–35.9 mm³ (mean 14.2 mm³) were ablated (duration: 103–150 s) to achieve 55 °C at the tumor boundary. Thermal doses ≥240 CEM43 were achieved across 90.7–98.0% of tumor volumes for four cases. Ablations were incomplete for remaining cases, attributed to motion-affected thermometry. Thermal dose-based ablative tumor coverage agreed with viability assessment of excised tumors. Conclusions: We have developed a system for delivering microwave ablation to subcutaneous tumors in small animals under MRIT guidance and demonstrated its performance in-vivo. [ABSTRACT FROM AUTHOR]
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- 2022
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9. Image-based computer modeling assessment of microwave ablation for treatment of adrenal tumors.
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Sebek, Jan, Cappiello, Grazia, Rahmani, George, Zeinali, Nooshin, Keating, Muireann, Fayemiwo, Michael, Harkin, Jim, McDaid, Liam, Gardiner, Bryan, Sheppard, Declan, Senanayake, Russell, Gurnell, Mark, O’Halloran, Martin, Dennedy, M. Conall, and Prakash, Punit
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COMPUTER simulation , *MICROWAVES , *ADRENAL tumors , *ADRENAL glands , *TUMOR treatment , *ADRENAL insufficiency , *COMPUTED tomography - Abstract
Purpose: To assess the feasibility of delivering microwave ablation for targeted treatment of aldosterone producing adenomas using image-based computational models. Methods: We curated an anonymized dataset of diagnostic 11C-metomidate PET/CT images of 14 patients with aldosterone producing adenomas (APA). A semi-automated approach was developed to segment the APA, adrenal gland, and adjacent organs within 2 cm of the APA boundary. The segmented volumes were used to implement patient-specific 3D electromagnetic-bioheat transfer models of microwave ablation with a 2.45 GHz directional microwave ablation applicator. Ablation profiles were quantitatively assessed based on the extent of the APA target encompassed by an ablative thermal dose, while limiting thermal damage to the adjacent normal adrenal tissue and sensitive critical structures. Results: Across the 14 patients, adrenal tumor volumes ranged between 393 mm3 and 2,395 mm3 . On average, 70% of the adrenal tumor volumes received an ablative thermal dose of 240CEM43, while limiting thermal damage to non-target structures, and thermally sparing 83.5–96.4% of normal adrenal gland. Average ablation duration was 293 s (range: 60–600 s). Simulations indicated coverage of the APA with an ablative dose was limited when the axis of the ablation applicator was not well aligned with the major axis of the targeted APA. Conclusions: Image-based computational models demonstrate the potential for delivering microwave ablation to APA targets within the adrenal gland, while limiting thermal damage to surrounding nontarget structures. [ABSTRACT FROM AUTHOR]
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- 2022
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10. Microwave ablation of lung tumors: A probabilistic approach for simulation‐based treatment planning.
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Sebek, Jan, Taeprasartsit, Pinyo, Wibowo, Henky, Beard, Warren L., Bortel, Radoslav, and Prakash, Punit
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LUNG tumors , *LUNGS , *MICROWAVES , *CANCER invasiveness , *TUMOR treatment , *TREATMENT duration - Abstract
Purpose: Microwave ablation (MWA) is a clinically established modality for treatment of lung tumors. A challenge with existing application of MWA, however, is local tumor progression, potentially due to failure to establish an adequate treatment margin. This study presents a robust simulation‐based treatment planning methodology to assist operators in comparatively assessing thermal profiles and likelihood of achieving a specified minimum margin as a function of candidate applied energy parameters. Methods: We employed a biophysical simulation‐based probabilistic treatment planning methodology to evaluate the likelihood of achieving a specified minimum margin for candidate treatment parameters (i.e., applied power and ablation duration for a given applicator position within a tumor). A set of simulations with varying tissue properties was evaluated for each considered combination of power and ablation duration, and for four different scenarios of contrast in tissue biophysical properties between tumor and normal lung. A treatment planning graph was then assembled, where distributions of achieved minimum ablation zone margins and collateral damage volumes can be assessed for candidate applied power and treatment duration combinations. For each chosen power and time combination, the operator can also visualize the histogram of ablation zone boundaries overlaid on the tumor and target volumes. We assembled treatment planning graphs for generic 1, 2, and 2.5 cm diameter spherically shaped tumors and also illustrated the impact of tissue heterogeneity on delivered treatment plans and resulting ablation histograms. Finally, we illustrated the treatment planning methodology on two example patient‐specific cases of tumors with irregular shapes. Results: The assembled treatment planning graphs indicate that 30 W, 6 min ablations achieve a 5‐mm minimum margin across all simulated cases for 1‐cm diameter spherical tumors, and 70 W, 10 min ablations achieve a 3‐mm minimum margin across 90% of simulations for a 2.5‐cm diameter spherical tumor. Different scenarios of tissue heterogeneity between tumor and lung tissue revealed 2 min overall difference in ablation duration, in order to reliably achieve a 4‐mm minimum margin or larger each time for 2‐cm diameter spherical tumor. Conclusions: An approach for simulation‐based treatment planning for microwave ablation of lung tumors is illustrated to account for the impact of specific geometry of the treatment site, tissue property uncertainty, and heterogeneity between the tumor and normal lung. [ABSTRACT FROM AUTHOR]
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- 2021
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11. Transcervical microwave ablation in type 2 uterine fibroids via a hysteroscopic approach: analysis of ablation profiles.
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Zia, Ghina, Sebek, Jan, Schenck, Jessica, and Prakash, Punit
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- 2021
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12. TRANSPARENCHYMAL MICROWAVE ABLATION ASSESSMENT IN A SURVIVAL PORCINE LUNG MODEL
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MYERS, RENELLE, MALDONADO, FABIEN, SEBEK, JAN, BEARD, WARREN, HIGHLAND, MARGARET, BILLER, DAVID, HODGSON, DAVID, WANG, ZIXUAN, GOH, STEVEN, YU, KUN-CHANG, SMITH, ABBE, HEMPHILL, NICHOLAS, CHAMANI, FARAZ, FARIDI, PEGAH, WIBOWO, HENKY, PRAKASH, PUNIT, and LAM, STEPHEN
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- 2021
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13. NIRS-based monitoring of kidney graft perfusion.
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Maly, Stepan, Janousek, Libor, Bortel, Radoslav, Sebek, Jan, Hospodka, Jiri, Skapa, Jiri, and Fronek, Jiri
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KIDNEY transplant complications ,NEAR infrared spectroscopy ,KIDNEYS ,DOPPLER ultrasonography ,POSTOPERATIVE period ,PERFUSION ,VIRTUAL prototypes - Abstract
Introduction: Acute early vascular complications are rare, but serious complications after kidney transplantation. They often result in graft loss. For this reason, shortening the diagnostic process is crucial. Currently, it is standard procedure to monitor renal graft perfusion using Doppler ultrasound (DU). With respect to acute vascular complications, the main disadvantage of this type of examination is its periodicity. It would be of great benefit if graft blood perfusion could be monitored continuously during the early postoperative period. It appears evident that a well-designed near infrared spectroscopy (NIRS) monitoring system could prove very useful during the early post-transplantation period. Its role in the immediate diagnosis of vascular complications could result in a significant increase in graft salvage, thus improving the patient's overall quality of life and lowering morbidity and mortality for renal graft recipients. The aim of this study was to design, construct and test such a monitoring system. Materials and methods: We designed a rough NIRS-based system prototype and prepared a two-stage laboratory experiment based on a laboratory pig model. In the first stage, a total of 10 animals were used to verify and optimize the technical aspects and functionality of the prototype sensor by testing it on the animal kidneys in-vivo. As a result of these tests, a more specific prototype was designed. During the second stage, we prepared a unique laboratory model of a pig kidney autotransplantation and tested the system for long-term functionality on a group of 20 animals. Overall sensitivity and specificity were calculated, and a final prototype was prepared and completed with its own analytic software and chassis. Results: We designed and constructed a NIRS-based system for kidney graft perfusion monitoring. The measurement system provided reliable performance and 100% sensitivity when detecting acute diminished blood perfusion of the transplanted kidneys in laboratory conditions. Conclusion: The system appears to be a useful tool for diagnosing diminished blood perfusion of kidney transplants during the early postoperative period. However, further testing is still required. We believe that applying our method in current human transplantation medicine is feasible, and we are confident that our prototype is ready for human testing. [ABSTRACT FROM AUTHOR]
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- 2020
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14. Broadband lung dielectric properties over the ablative temperature range: Experimental measurements and parametric models.
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Sebek, Jan, Bortel, Radoslav, and Prakash, Punit
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DIELECTRIC properties , *PARAMETRIC modeling , *PERMITTIVITY , *STANDARD deviations , *LUNGS - Abstract
Purpose: Computational models of microwave tissue ablation are widely used to guide the development of ablation devices, and are increasingly being used for the development of treatment planning and monitoring platforms. Knowledge of temperature‐dependent dielectric properties of lung tissue is essential for accurate modeling of microwave ablation (MWA) of the lung. Methods: We employed the open‐ended coaxial probe method, coupled with a custom tissue heating apparatus, to measure dielectric properties of ex vivo porcine and bovine lung tissue at temperatures ranging between 31 and 150 ∘C, over the frequency range 500 MHz to 6 GHz. Furthermore, we employed numerical optimization techniques to provide parametric models for characterizing the broadband temperature‐dependent dielectric properties of tissue, and their variability across tissue samples, suitable for use in computational models of microwave tissue ablation. Results: Rapid decreases in both relative permittivity and effective conductivity were observed in the temperature range from 94 to 108 ∘C. Over the measured frequency range, both relative permittivity and effective conductivity were suitably modeled by piecewise linear functions [root mean square error (RMSE) = 1.0952 for permittivity and 0.0650 S/m for conductivity]. Detailed characterization of the variability in lung tissue properties was provided to enable uncertainty quantification of models of MWA. Conclusions: The reported dielectric properties of lung tissue, and parametric models which also capture their distribution, will aid the development of computational models of microwave lung ablation. [ABSTRACT FROM AUTHOR]
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- 2019
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15. Suppression of overlearning in independent component analysis used for removal of muscular artifacts from electroencephalographic records.
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Sebek, Jan, Bortel, Radoslav, and Sovka, Pavel
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OVERLEARNING , *INDEPENDENT component analysis , *ANTIQUITIES , *ELECTROENCEPHALOGRAPHY , *SUBSPACE identification (Mathematics) - Abstract
This paper addresses the overlearning problem in the independent component analysis (ICA) used for the removal of muscular artifacts from electroencephalographic (EEG) records. We note that for short EEG records with high number of channels the ICA fails to separate artifact-free EEG and muscular artifacts, which has been previously attributed to the phenomenon called overlearning. We address this problem by projecting an EEG record into several subspaces with a lower dimension, and perform the ICA on each subspace separately. Due to a reduced dimension of the subspaces, the overlearning is suppressed, and muscular artifacts are better separated. Once the muscular artifacts are removed, the signals in the individual subspaces are combined to provide an artifact free EEG record. We show that for short signals and high number of EEG channels our approach outperforms the currently available ICA based algorithms for muscular artifact removal. The proposed technique can efficiently suppress ICA overlearning for short signal segments of high density EEG signals. [ABSTRACT FROM AUTHOR]
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- 2018
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16. Analysis of minimally invasive directional antennas for microwave tissue ablation.
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Sebek, Jan, Curto, Sergio, Bortel, Radoslav, and Prakash, Punit
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BRAIN banks , *DIRECTIONAL antennas , *ABLATION techniques , *TUMORS , *SKIN absorption - Abstract
Purpose:Microwave ablation (MWA) applicators capable of creating directional heating patterns offer the potential of simplifying treatment of targets in proximity to critical structures and avoiding the need for piercing the tumour volume. This work reports on improved directional MWA antennas with the objectives of minimising device diameter for percutaneous use (≤ ∼13 gauge) and yielding larger ablation zones. Methods:Two directional MWA antenna designs, with a modified monopole radiating element and spherical and parabolic reflectors are proposed. A 3D-coupled electromagnetic heat transfer with temperature-dependent material properties was implemented to characterise MWA at 40 and 77 W, for 5 and 10 min. Simulations were also used to assess antenna impedance matching within liver, kidney, lung, bone and brain tissue. The two antenna designs were fabricated and experimentally evaluated with ablations inex vivotissue at the two power levels and treatment durations (n = 5 repetitions for each group). Results:The computed specific absorption rate (SAR) patterns for both antennas were similar, although simulations indicated slightly greater forward penetration for the parabolic antenna. Based on simulations for antennas inserted within different tissues, the proposed antenna design appears to offer good impedance matching for a variety of tissue types. Experiments inex vivotissue showed radial ablation depths of 19 ± 0.9 mm in the forward direction for the applicator with spherical reflector and 18.7 ± 0.7 mm for the applicator with parabolic reflector. Conclusion:These results suggest the applicator may be suitable for creating localised directional ablation zones for treating small and medium-sized targets with a percutaneous approach. [ABSTRACT FROM PUBLISHER]
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- 2017
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17. Sensitivity of microwave ablation models to tissue biophysical properties: A first step toward probabilistic modeling and treatment planning.
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Sebek, Jan, Albin, Nathan, Bortel, Radoslav, Natarajan, Bala, and Prakash, Punit
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MICROWAVES , *ABLATION techniques , *RADIOTHERAPY treatment planning , *TISSUE wounds , *FINITE element method - Abstract
Purpose: Computational models of microwave ablation (MWA) are widely used during the design optimization of novel devices and are under consideration for patient-specific treatment planning. The objective of this study was to assess the sensitivity of computational models of MWA to tissue biophysical properties. Methods: The Morris method was employed to assess the global sensitivity of the coupled electromagnetic-thermal model, which was implemented with the finite element method (FEM). The FEM model incorporated temperature dependencies of tissue physical properties. The variability of the model was studied using six different outputs to characterize the size and shape of the ablation zone, as well as impedance matching of the ablation antenna. Furthermore, the sensitivity results were statistically analyzed and absolute influence of each input parameter was quantified. A framework for systematically incorporating model uncertainties for treatment planning was suggested. Results: A total of 1221 simulations, incorporating 111 randomly sampled starting points, were performed. Tissue dielectric parameters, specifically relative permittivity, effective conductivity, and the threshold temperature at which they transitioned to lower values (i.e., signifying desiccation), were identified as the most influential parameters for the shape of the ablation zone and antenna impedance matching. Of the thermal parameters considered in this study, the nominal blood perfusion rate and the temperature interval across which the tissue changes phase were identified as the most influential. The latent heat of tissue water vaporization and the volumetric heat capacity of the vaporized tissue were recognized as the least influential parameters. Based on the evaluation of absolute changes, the most important parameter (perfusion) had approximately 40.23 times greater influence on ablation area than the least important parameter (volumetric heat capacity of vaporized tissue). Another significant input parameter (permittivity) had 22.26 times higher influence on the deviation of ablation edge shape from a sphere than one of the less important parameters (latent heat of liver tissue vaporization). Conclusions: Dielectric parameters, blood perfusion rate, and the temperature interval across which the tissue changes phase were found to have the most significant impact on MWA model outputs. The latent heat of tissue water vaporization and the volumetric heat capacity of the vaporized tissue were recognized as the least influential parameters. Uncertainties in model outputs identified in this study can be incorporated to provide probabilistic maps of expected ablation outcome for patient-specific treatment planning. [ABSTRACT FROM AUTHOR]
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- 2016
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18. A PERSONALIZED MICROWAVE ABLATION TREATMENT PLANNING USING RADIOMICS AND SIMULATION-BASED MODELING.
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Maldonado, Fabien, Wibowo, Henky, Prakash, Punit, Sebek, Jan, Chamani, Faraz, Taeprasartsit, Pinyo, Pathompatai, Chanok, Khuwijitjaru, Natthapat, Khuwijitjaru, Natthawat, and Dupuy, Damian
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RADIOMICS ,MICROWAVES ,THERAPEUTICS - Published
- 2021
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19. Delivering e-Government Services to Citizens and Businesses: The Government Gateway Concept.
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Sebek, Jan
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The aim of the Government Gateway is to provide better, customer-focused and more efficient public services. [ABSTRACT FROM AUTHOR]
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- 2003
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20. A personalized approach for microwave ablation treatment planning fusing radiomics and bioheat transfer modeling.
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Fei, Baowei, Linte, Cristian A., Taeprasartsit, Pinyo, Pathompatai, Chanok, Jusomjai, Kasidit, Wibowo, Henky, Sebek, Jan, and Prakash, Punit
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- 2020
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21. Assessment of thermochromic phantoms for characterizing microwave ablation devices.
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Zia G, Lintz A, Hardin C, Bottiglieri A, Sebek J, and Prakash P
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Background and Purpose: Thermochromic gel phantoms provide a controlled medium for visual assessment of thermal ablation device performance. However, there are limited studies reporting on the comparative assessment of ablation profiles assessed in thermochromic gel phantoms against those in ex vivo tissue. The objective of this study was to compare microwave ablation zones in a thermochromic tissue mimicking gel phantom and ex vivo bovine liver, and to report on measurements of the temperature dependent dielectric and thermal properties of the phantom., Methods: Thermochromic polyacrylamide phantoms were fabricated following a previously reported protocol. Phantom samples were heated to temperatures in the range of 20 - 90 °C in a temperature-controlled water bath, and colorimetric analysis of images of the phantom taken after heating were used to develop a calibration between color changes and temperature to which the phantom was heated. Using a custom, 2.45 GHz water-cooled microwave ablation antenna, ablations were performed in fresh ex vivo liver and phantoms using 65 W applied for 5 min or 10 min ( n = 3 samples in each medium for each power/time combination). Broadband (500 MHz - 6 GHz) temperature-dependent dielectric and thermal properties of the phantom were measured over the temperature range 22 - 100 °C., Results: Colorimetric analysis showed that the sharp change in gel phantom color commences at a temperature of 57 °C. Short and long axes of the ablation zone in the phantom (as assessed by the 57 °C isotherm) for 65 W, 5 min ablations were aligned with extents of the ablation zone observed in ex vivo bovine liver. However, for the 65 W, 10 min setting, ablations in the phantom were on average 23.7% smaller in short axis and 7.4 % smaller in long axis than those observed in ex vivo liver. Measurements of the temperature dependent relative permittivity, thermal conductivity, and volumetric heat capacity of the phantom largely followed similar trends to published values for ex vivo liver tissue., Conclusion: Thermochromic tissue mimicking phantoms provide a controlled, and reproducible medium for comparative assessment of microwave ablation devices and energy delivery settings, though ablation zone size and shapes may not accurately represent ablation sizes and shapes observed in ex vivo liver tissue under similar conditions.
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- 2024
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22. Bronchoscopy-Guided High-Power Microwave Ablation in an in vivo Porcine Lung Model.
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Sebek J, Goh S, Beard WL, Biller DS, Hodgson DS, Highland MA, Smith A, Hemphill N, Yu KC, Myers RA, Lam S, Wibowo H, and Prakash P
- Abstract
Introduction: Percutaneous microwave ablation (MWA) is clinically accepted for the treatment of lung tumors and oligometastatic disease. Bronchoscopic MWA is under development and evaluation in the clinical setting. We previously reported on the development of a bronchoscopy-guided MWA system integrated with clinical virtual bronchoscopy and navigation and demonstrated the feasibility of transbronchial MWA, using a maximum power of 60 W at the catheter input. Here, we assessed the performance of bronchoscopy-guided MWA with an improved catheter (maximum power handling of up to 120 W) in normal porcine lung in vivo (as in the previous study)., Methods: A total of 8 bronchoscopy-guided MWA were performed ( n = 2 pigs; 4 ablations per pig) with power levels of 90 W and 120 W applied for 5 and 10 min, respectively. Virtual bronchoscopy planning and navigation guided transbronchial or endobronchial positioning of the MWA applicator for ablation of lung parenchyma. Following completion of ablations and post-procedure CT imaging, the lungs were harvested and sectioned for gross and histopathologic ablation analysis., Results: Bronchoscopy-guided MWA with applied energy levels of 90 W/5 min and 120 W/10 min yielded ablation zones with short-axis diameters in the range of 20-28 mm (56-116% increase) as compared to ∼13 mm from our previous study (60 W/10 min). Histology of higher-power and previous lower-power ablations was consistent, including a central necrotic zone, a thermal fixation zone with intact tissue architecture, and a hemorrhagic periphery. Catheter positioning and its confirmation via intra-procedural 3D imaging (e.g., cone-beam CT) proved to be critical for ablation consistency., Conclusion: Bronchoscopy-guided MWA with an improved catheter designed for maximum power 120 W yields large ablations in normal porcine lung in vivo., Competing Interests: J.S., W.L.B., M.A.H., N.H., D.S.H., D.S.B., R.A.M., and S.L. have no relevant disclosures. S.G. and H.W. were employees of phenoMapper at the time of this study. A.S. and K.-C.Y. were employees of Broncus Medical Inc., at the time of this study. P.P. reports grants from the National Institutes of Health during the conduct of the study; and grants from the National Institutes of Health, National Science Foundation, and Jano.Life, outside the submitted work. In addition, P.P. is an inventor on issued patents and pending patent applications on microwave ablation technology., (© 2024 The Author(s). Published by S. Karger AG, Basel.)
- Published
- 2024
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23. Characterization of a Biochemical Mouse Model of Primary Aldosteronism for Thermal Therapies.
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Timmerman SA, Mullen N, Taylor AE, Gilligan LC, Pyle M, Shrestha TB, Sebek J, Highland MA, Challapalli R, Arlt W, Bossmann SH, Dennedy MC, Prakash P, and Basel MT
- Abstract
Introduction: Aldosterone-producing adenoma (APA) is the most common cause of endocrine-related hypertension but surgery is not always feasible. Current medical interventions are associated with significant side effects and poor patient compliance. New APA animal models that replicate basic characteristics of APA and give physical and biochemical feedback are needed to test new non-surgical treatment methods, such as image-guided thermal ablation., Methods: A model of APA was developed in nude mice using HAC15 cells, a human adrenal carcinoma cell line. Tumor growth, aldosterone production, and sensitivity to angiotensin II were characterized in the model. The utility of the model was validated via treatment with microwave ablation and characterization of the resulting physical and biochemical changes in the tumor., Results: The APA model showed rapid and relatively homogeneous growth. The tumors produced aldosterone and steroid precursors in response to angiotensin II challenge, and plasma aldosterone levels were significantly higher in tumor bearing mice two hours after challenge verses non-tumor bearing mice. The model was useful for testing microwave ablation therapy, reducing aldosterone production by 80% in treated mice., Conclusion: The HAC15 model is a useful tumor model to study and develop localized treatment methods for APA.
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- 2024
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24. Transmission Coefficient-Based Monitoring of Microwave Ablation: Development and Experimental Evaluation in Ex Vivo Tissue.
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Zeinali N, Sebek J, Fallahi H, Pfannenstiel A, and Prakash P
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- Animals, Cattle, Liver surgery, Microwaves therapeutic use, Equipment Design, Radiofrequency Ablation, Ablation Techniques, Catheter Ablation methods
- Abstract
Objectives: To assess the feasibility of monitoring transient evolution of thermal ablation zones with a microwave transmission coefficient-based technique., Methods: Microwave ablation was performed in ex vivo bovine liver with two 2.45 GHz directional antennas. A custom apparatus was developed to enable periodic switching between "heating mode" when power from the generator was coupled to the antennas, and "monitoring mode", when antennas were coupled to a network analyzer for broadband transmission coefficient ( s
21 ) measurements. Experiments were performed with applied powers ranging between 30-50 W per antenna for 53-1219 s. Transient s21 spectra over the course of ablations were analyzed to determine feasibility of predicting extent of ablation zones and compared against ground truth assessment from images of sectioned tissue. A linear regression-based mapping between the two datasets was derived to predict ablation extent., Results: Normalized average transmission coefficient initially rapidly decreased and then increased before asymptotically approaching steady state, with the transition time ranging between 53 s (45 W) and 109 s (30 W). Analysis of ground truth ablation zone images indicated time to complete ablation of 230-350 s. The relative prediction error for time to complete ablation derived from the s21 data was in the range of 1.6%-2.3% compared to ground truth., Conclusion: We have demonstrated the feasibility of monitoring transient evolution of thermal ablation zones using microwave transmission coefficient measurements in ex vivo tissue., Significance: The presented technique has potential to contribute towards addressing the clinical need for a method of monitoring evolution of thermal ablation zones.- Published
- 2024
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25. Temperature-dependent dielectric properties of human uterine fibroids over microwave frequencies.
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Zia G, Sebek J, and Prakash P
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- Computer Simulation, Electric Conductivity, Female, Humans, Temperature, Leiomyoma surgery, Microwaves
- Abstract
Microwave ablation is under investigation as a minimally-invasive treatment for uterine fibroids. Computational models play a vital role in the development, evaluation and characterization of candidate ablation devices. The temperature-dependent dielectric properties of fibroid tissue are essential for accurate computational modeling. Objective: To measure the broadband temperature-dependent dielectric properties of uterine fibroids excised during hysterectomy procedures. Methods : The open-ended coaxial probe method was employed for measuring the broadband dielectric properties of freshly excised human uterine fibroid samples (n = 6) obtained from an IRB-approved tissue bank. The dielectric properties (relative permittivity, ε
r , and effective electrical conductivity, σeff ) were evaluated at temperatures ranging from 23 °C-150 °C, over the frequency range of 0.5-6 GHz. Linear piecewise parametrization with respect to temperature and quadratic parametrization with respect to frequency was applied to characterize broadband temperature-dependent dielectric properties of fibroid tissue. Results : The baseline room temperature values of εr vary from 57.5 ± 5.29 to 44.5 ± 5.77 units and σeff changes from 0.91 ± 0.19 to 6.02 ± 0.7 S m-1 over the frequency range of 0.5-6 GHz. At temperatures close to the water vaporization point, εr , drops considerably i.e. to 12%-14% of its baseline value for all measured frequencies. σeff values initially rise till 98 °C and then fall to 11%-13% of their baseline values at 125 °C for frequencies ≤2.45 GHz. The σeff follows a decreasing trend for frequencies >2.45 GHz and drops to ∼6 % of their baseline room temperature values. Conclusion: The temperature dependent dielectric properties of uterine fibroid tissues over microwave frequency range are reported for the first time in this study. Parametric models of uterine fibroid dielectric properties are also presented for incorporation within computational models of microwave ablation of fibroids., (© 2021 IOP Publishing Ltd.)- Published
- 2021
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26. Broadband Dielectric Properties of Ex Vivo Bovine Liver Tissue Characterized at Ablative Temperatures.
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Fallahi H, Sebek J, and Prakash P
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- Animals, Cattle, Electric Conductivity, Heating, Temperature, Liver, Microwaves
- Abstract
Objective: To investigate the thermal and frequency dependence of dielectric properties of ex vivo liver tissue - relative permittivity and effective conductivity - over the frequency range 500 MHz to 6 GHz and temperatures ranging from 20 to 130 °C., Methods: We measured the dielectric properties of fresh ex vivo bovine liver tissue using the open-ended coaxial probe method (n = 15 samples). Numerical optimization techniques were utilized to obtain parametric models for characterizing changes in broadband dielectric properties as a function of temperature and thermal isoeffective dose. The effect of heating tissue at rates over the range 6.4-16.9 °C/min was studied. The measured dielectric properties were used in simulations of microwave ablation to assess changes in simulated antenna return loss compared to experimental measurements., Results: Across all frequencies, both relative permittivity and effective conductivity dropped sharply over the temperature range 89 - 107 °C. Below 91 °C, the slope of the effective conductivity changes from positive values at lower frequencies (0.5-1.64 GHz) to negative values at higher frequencies (1.64-6 GHz). The maximum achieved correlation values between transient reflection coefficients from measurements and simulations ranged between 0.83 - 0.89 and 0.68 - 0.91, respectively, when using temperature-dependent and thermal-dose dependent dielectric property parameterizations., Conclusion: We have presented experimental measurements and parametric models for characterizing changes in dielectric properties of bovine liver tissue at ablative temperatures., Significance: The presented dielectric property models will contribute to the development of ablation systems operating at frequencies other than 2.45 GHz, as well as broadband techniques for monitoring growth of microwave ablation zones.
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- 2021
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27. Bronchoscopically delivered microwave ablation in an in vivo porcine lung model.
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Sebek J, Kramer S, Rocha R, Yu KC, Bortel R, Beard WL, Biller DS, Hodgson DS, Ganta CK, Wibowo H, Yee J, Myers R, Lam S, and Prakash P
- Abstract
Background: Percutaneous microwave ablation is clinically used for inoperable lung tumour treatment. Delivery of microwave ablation applicators to tumour sites within lung parenchyma under virtual bronchoscopy guidance may enable ablation with reduced risk of pneumothorax, providing a minimally invasive treatment of early-stage tumours, which are increasingly detected with computed tomography (CT) screening. The objective of this study was to integrate a custom microwave ablation platform, incorporating a flexible applicator, with a clinically established virtual bronchoscopy guidance system, and to assess technical feasibility for safely creating localised thermal ablations in porcine lungs in vivo ., Methods: Pre-ablation CTs of normal pigs were acquired to create a virtual model of the lungs, including airways and significant blood vessels. Virtual bronchoscopy-guided microwave ablation procedures were performed with 24-32 W power (at the applicator distal tip) delivered for 5-10 mins. A total of eight ablations were performed in three pigs. Post-treatment CT images were acquired to assess the extent of damage and ablation zones were further evaluated with viability stains and histopathologic analysis., Results: The flexible microwave applicators were delivered to ablation sites within lung parenchyma 5-24 mm from the airway wall via a tunnel created under virtual bronchoscopy guidance. No pneumothorax or significant airway bleeding was observed. The ablation short axis observed on gross pathology ranged 16.5-23.5 mm and 14-26 mm on CT imaging., Conclusion: We have demonstrated the technical feasibility for safely delivering microwave ablation in the lung parenchyma under virtual bronchoscopic guidance in an in vivo porcine lung model., Competing Interests: Conflict of interest: J. Sebek reports grant from the Czech Ministry of Education, Youth and Sports, during the conduct of the study. Conflict of interest: S. Kramer has nothing to disclose. Conflict of interest: R. Rocha has nothing to disclose. Conflict of interest: K-C. Yu has nothing to disclose. Conflict of interest: R. Bortel reports grants from the Czech Ministry of Education, Youth and Sports, during the conduct of the study. Conflict of interest: W.L. Beard has nothing to disclose. Conflict of interest: D.S. Biller has nothing to disclose. Conflict of interest: D.S. Hodgson has nothing to disclose. Conflict of interest: C.K. Ganta has nothing to disclose. Conflict of interest: H. Wibovo has nothing to disclose. Conflict of interest: J. Yee has nothing to disclose. Conflict of interest: R. Myers has nothing to disclose. Conflict of interest: S. Lam has nothing to disclose. Conflict of interest: P. Prakash reports grants from the National Institutes of Health during the conduct of the study; and grants from Hologic, Inc., and the National Institutes of Health, outside the submitted work. In addition, P. Prakash has a patent US 62/450,916 pending and within the past 12 months, in addition to the active grants listed above, has received grants from Neurent Medical, Ltd. and Broncus Medical, Inc., for projects unrelated to this work. These projects are now completed and no longer active., (Copyright ©ERS 2020.)
- Published
- 2020
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28. Assessment of thermal damage to myometrium during microwave ablation of uterine fibroids.
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Zia G, Sebek J, Alvarez E, and Prakash P
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- Animals, Cattle, Female, Microwaves, Radiofrequency Ablation, Uterus, Leiomyoma surgery, Myometrium surgery
- Abstract
Thermal ablation techniques are increasingly used for the treatment of symptomatic uterine fibroids. Thermal protection of myometrial tissue adjacent to the fibroid from ablation is critical to maximally preserve the uterus. This study presents a bench top experimental setup, using ex vivo bovine muscle as a surrogate tissue, for evaluating collateral thermal damage in tissues during fibroid ablation. The study reports on the effect of applicator insertion angles (67.5° and 90°) into a mock fibroid on the efficacy of treatment. 6 experiments were performed (3 for each insertion angle) with 30 W applied power at 2.45 GHz. The heating duration was restricted to the time at which a thermal dose of 10 cumulative equivalent minutes at 43 °C (10 CEM 43) was accrued at the boundary of the mock fibroid. Results showed that the volume of ablation inside the mock fibroid dropped considerably from 66% to 17% when the applicator insertion angle was changed from 90º to 67.5º, suggesting that insertion angle plays an important role during microwave ablation of fibroid. The proposed setup provides a method for validating computational models for accurate and safe delivery of ablation to target tissues in fibroid treatment.
- Published
- 2020
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