34 results on '"Rooseboom, Martijn"'
Search Results
2. The short-term toxicity and metabolome of Benzene
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Faulhammer, Frank, van Ravenzwaay, Bennard, Schnatter, A. Robert, Rooseboom, Martijn, Kamp, Hennicke, Flick, Burkhard, Giri, Varun, Sperber, Saskia, Higgins, Larry G., Penman, Michael G., and Kocabas, Neslihan Aygun
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- 2024
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3. Micronuclei in human peripheral blood and bone marrow as genotoxicity markers: A systematic review and meta-analysis
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Antoniou, Evangelia E., Rooseboom, Martijn, Kocabas, Neslihan A., North, Colin M., and Zeegers, Maurice P.
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- 2023
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4. Recommendation for an occupational exposure limit for toluene
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Rooseboom, Martijn, Kocabas, Neslihan Aygun, North, Colin, Radcliffe, Richard James, and Segal, Lawrence
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- 2023
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5. Application of physiologically-based pharmacokinetic modeled toluene blood concentration in the assessment of short term exposure limits
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North, Colin M., Rooseboom, Martijn, Kocabas, Neslihan Aygun, Synhaeve, Nicholas, Radcliffe, Richard James, and Segal, Lawrence
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- 2023
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6. RespiraTox – Development of a QSAR model to predict human respiratory irritants
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Wehr, Matthias M., Sarang, Satinder S., Rooseboom, Martijn, Boogaard, Peter J., Karwath, Andreas, and Escher, Sylvia E.
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- 2022
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7. Appraisal of the human health related toxicological information available on dicyclopentadiene (DCPD) in view of assessing the substance's potential to cause endocrine disruption
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Tencalla, Francesca, Kocabas, Neslihan Aygun, Rooseboom, Martijn, Rushton, Erik, Synhaeve, Nicholas, and Petry, Thomas
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- 2021
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8. Xylene: weight of evidence approach case study to determine the need for an extended one generation reproductive study with a developmental neurotoxicity animal cohort.
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Faulhammer, Frank, Rooseboom, Martijn, Kocabas, Neslihan Aygun, Arts, Josje H. E., Cordova, Alexandra, Freeman, Elaine, Higgins, Larry G., Nahar, Muna, Richmond, Emily, Schneider, Steffen, and Morris-Schaffer, Keith
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CENTRAL nervous system , *HIPPURIC acid , *PRODUCTION quantity , *XYLENE , *TOXICITY testing , *PHARMACOKINETICS - Abstract
Xylene is a high production volume chemical that is widely used as a solvent and polymer precursor, and is currently undergoing substance evaluation under Registration, Evaluation, Authorization and Restriction of Chemicals (REACH). Xylenes recently received testing decisions on one-generation reproductive toxicity (EOGRT) studies with additional developmental neurotoxicity (DNT) cohorts for each of the three isomers. Xylene presents a unique opportunity to investigate the need for additional animal DNT toxicology testing because it is a legacy industrial chemical for which a significant amount of animal and human data already exists on its toxicity profile, including central nervous system effects. Therefore, to address the need for further vertebrate testing, a comprehensive weight of evidence (WOE) review of published and previously unpublished new studies of xylene substances was performed. Evidence topics included the pharmacokinetics, narcotic effects in humans and animals, narcotic mode of action (MOA), and strength of DNT signal for xylene. Pharmacokinetic data indicate minimal distribution of the unmetabolized parent compound to the fetus relative to parental brain tissue, and rapid metabolism of xylene to methyl hippuric acid (MHA), which is also rapidly excreted in both humans and animals. Xylene exposure has also resulted in transient, nonspecific neurological effects including delays in reaction time of human volunteers and reductions in motor activity of animals. This narcotic MOA for xylene occurs by the nonspecific perturbation of nervous cell membrane phospholipids, such that membrane-bound proteins and their respective functions are impaired. Furthermore, an in-depth review of the available DNT data indicates significant methodological deficiencies in several studies in the literature purported to provide evidence of a DNT concern following xylene exposure and no DNT concern reported in one reliable study. In conclusion, based on xylene's pharmacokinetics, narcotic effects on the central nervous system observed in animal and human studies, its narcotic MOA, and the lack of a robust signal from the published DNT studies, there is no trigger for the additional EOGRT study DNT cohort to be conducted for xylene. Further, the findings on narcotic effects and MOA underscore the difficulty in separating transient, acute intoxication effects via direct exposure of the offspring from investigating DNT effects (as investigated in a standard guideline (426) DNT study) in the EOGRT study, therefore producing unreliable data, which is ethically at odds with REACH and 3 R principles. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Application of Caenorhabditis elegans (nematode) and Danio rerio embryo (zebrafish) as model systems to screen for developmental and reproductive toxicity of Piperazine compounds
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Racz, Peter I., Wildwater, Marjolein, Rooseboom, Martijn, Kerkhof, Engelien, Pieters, Raymond, Yebra-Pimentel, Elena Santidrian, Dirks, Ron P., Spaink, Herman P., Smulders, Chantal, and Whale, Graham F.
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- 2017
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10. The current status of exposure-driven approaches for chemical safety assessment: A cross-sector perspective
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Sewell, Fiona, Aggarwal, Manoj, Bachler, Gerald, Broadmeadow, Alan, Gellatly, Nichola, Moore, Emma, Robinson, Sally, Rooseboom, Martijn, Stevens, Alexander, Terry, Claire, and Burden, Natalie
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- 2017
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11. Advances in Understanding Xenobiotic Metabolism
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van Vugt-Lussenburg, Barbara M A, Capinha, Liliana, Reinen, Jelle, Rooseboom, Martijn, Kranendonk, Michel, Onderwater, Rob C A, Jennings, Paul, NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM), and Centre for Toxicogenomics and Human Health (ToxOmics)
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Metabolism ,Rodent models ,Toxicity ,Peptides and proteins ,Anatomy - Abstract
The understanding of how exogenous chemicals (xenobiotics) are metabolized, distributed, and eliminated is critical to determine the impact of the chemical and its metabolites to the (human) organism. This is part of the research and educational discipline ADMET (absorption, distribution, metabolism, elimination, and toxicity). Here, we review the work of Jan Commandeur and colleagues who have not only made a significant impact in understanding of phase I and phase II metabolism of several important compounds but also contributed greatly to the development of experimental techniques for the study of xenobiotic metabolism. Jan Commandeur's work has covered a broad area of research, such as the development of online screening methodologies, the use of a combination of enzyme mutagenesis and molecular modeling for structure-activity relationship (SAR) studies, and the development of novel probe substrates. This work is the bedrock of current activities and brings the field closer to personalized (cohort-based) pharmacology, toxicology, and hazard/risk assessment. publishersversion published
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- 2022
12. New approach methodologies (NAMs) for human-relevant biokinetics predictions
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Punt, Ans, Bouwmeester, Hans, Blaauboer, Bas J, Coecke, Sandra, Hakkert, Betty, Hendriks, Delilah F G, Jennings, Paul, Kramer, Nynke I, Neuhoff, Sibylle, Masereeuw, Rosalinde, Paini, Alicia, Peijnenburg, Ad A C M, Rooseboom, Martijn, Shuler, Michael L, Sorrell, Ian, Spee, Bart, Strikwold, Marije, Van der Meer, Andries D, Van der Zande, Meike, Vinken, Mathieu, Yang, Huan, Bos, Peter M J, Heringa, Minne B, Molecular and Computational Toxicology, AIMMS, Liver Connexin and Pannexin Research Group, Pharmaceutical and Pharmacological Sciences, Connexin Signalling Research Group, Experimental in vitro toxicology and dermato-cosmetology, and Applied Stem Cell Technologies
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in vitro ,Animal Testing Alternatives ,Toxicology ,Risk Assessment ,biokinetics ,Hazardous Substances ,SDG 17 - Partnerships for the Goals ,BU Toxicologie, Novel Foods & Agroketens ,in silico ,next-generation risk evaluations ,PB(P)K ,Animals ,Humans ,BU Toxicology, Novel Foods & Agrochains ,Toxicologie ,VLAG ,QIVIVE - Abstract
For almost fifteen years, the availability and regulatory acceptance of new approach methodologies (NAMs) to assess the absorption, distribution, metabolism and excretion (ADME/biokinetics) in chemical risk evaluations are a bottleneck. To enhance the field, a team of 24 experts from science, industry, and regulatory bodies, including new generation toxicologists, met at the Lorentz Centre in Leiden, The Netherlands. A range of possibilities for the use of NAMs for biokinetics in risk evaluations were formulated (for example to define species differences and human variation or to perform quantitative in vitro-in vivo extrapolations). To increase the regulatory use and acceptance of NAMs for biokinetics for these ADME considerations within risk evaluations, the development of test guidelines (protocols) and of overarching guidance documents is considered a critical step. To this end, a need for an expert group on biokinetics within the Organisation of Economic Cooperation and Development (OECD) to supervise this process was formulated. The workshop discussions revealed that method development is still required, particularly to adequately capture transporter mediated processes as well as to obtain cell models that reflect the physiology and kinetic characteristics of relevant organs. Developments in the fields of stem cells, organoids and organ-on-a-chip models provide promising tools to meet these research needs in the future.
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- 2020
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13. Comparison of drug transporter gene expression and functionality in Caco-2 cells from 10 different laboratories
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Hayeshi, Rose, Hilgendorf, Constanze, Artursson, Per, Augustijns, Patrick, Brodin, Birger, Dehertogh, Pascale, Fisher, Karen, Fossati, Lina, Hovenkamp, Egbert, Korjamo, Timo, Masungi, Chantal, Maubon, Nathalie, Mols, Raf, Müllertz, Anette, Mönkkönen, Jukka, O’Driscoll, Caitriona, Oppers-Tiemissen, H.M., Ragnarsson, Eva G.E., Rooseboom, Martijn, and Ungell, Anna-Lena
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- 2008
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14. Towards a reporting guideline for developmental and reproductive toxicology testing in C. elegans and other nematodes
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van der Voet, Monique, Teunis, Marc, Louter-van de Haar, Johanna, Stigter, Nienke, Bhalla, Diksha, Rooseboom, Martijn, Wever, Kimberley E, Krul, Cyrille, Pieters, Raymond, Wildwater, Marjolein, van Noort, Vera, IRAS OH Toxicology, dIRAS RA-1, IRAS OH Toxicology, and dIRAS RA-1
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Paper ,AcademicSubjects/SCI01040 ,All institutes and research themes of the Radboud University Medical Center ,AcademicSubjects/MED00305 ,developmental and reproductive toxicology (DART) ,Cancer development and immune defence Radboud Institute for Molecular Life Sciences [Radboudumc 2] ,Health, Toxicology and Mutagenesis ,Vascular damage Radboud Institute for Health Sciences [Radboudumc 16] ,refinement and replacement (3Rs) ,reduction ,Toxicology ,new approach methodologies (NAMs) - Abstract
Implementation of reliable methodologies allowing Reduction, Refinement, and Replacement (3Rs) of animal testing is a process that takes several decades and is still not complete. Reliable methods are essential for regulatory hazard assessment of chemicals where differences in test protocol can influence the test outcomes and thus affect the confidence in the predictive value of the organisms used as an alternative for mammals. Although test guidelines are common for mammalian studies, they are scarce for non-vertebrate organisms that would allow for the 3Rs of animal testing. Here, we present a set of 30 reporting criteria as the basis for such a guideline for Developmental and Reproductive Toxicology (DART) testing in the nematode Caenorhabditis elegans. Small organisms like C. elegans are upcoming in new approach methodologies for hazard assessment; thus, reliable and robust test protocols are urgently needed. A literature assessment of the fulfilment of the reporting criteria demonstrates that although studies describe methodological details, essential information such as compound purity and lot/batch number or type of container is often not reported. The formulated set of reporting criteria for C. elegans testing can be used by (i) researchers to describe essential experimental details (ii) data scientists that aggregate information to assess data quality and include data in aggregated databases (iii) regulators to assess study data for inclusion in regulatory hazard assessment of chemicals. ispartof: TOXICOLOGY RESEARCH vol:10 issue:6 pages:1202-1210 ispartof: location:England status: published
- Published
- 2021
15. "Commandeuring" Xenobiotic Metabolism: Advances in Understanding Xenobiotic Metabolism.
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van Vugt-Lussenburg, Barbara M. A., Capinha, Liliana, Reinen, Jelle, Rooseboom, Martijn, Kranendonk, Michel, Onderwater, Rob C. A., and Jennings, Paul
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- 2022
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16. Modeling and molecular dynamics of glutamine transaminase K/cysteine conjugate β-lyase
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Venhorst, Jennifer, ter Laak, Antonius M, Meijer, Moira, van de Wetering, Ineke, Commandeur, Jan N.M, Rooseboom, Martijn, and Vermeulen, Nico P.E
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- 2003
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17. Tissue distribution of cytosolic β-elimination reactions of selenocysteine Se-conjugates in rat and human
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Rooseboom, Martijn, Vermeulen, Nico P.E., Groot, Ed J., and Commandeur, Jan N.M.
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- 2002
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18. Induction of glutathione- S-transferase mRNA levels by chemopreventive selenocysteine Se-conjugates
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’t Hoen, Peter A.C., Rooseboom, Martijn, Bijsterbosch, Martin K., van Berkel, Theo J.C., Vermeulen, Nico P.E., and Commandeur, Jan N.M.
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- 2002
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19. [19] Enzymatic pathways of β elimination of chemopreventive selenocysteine Se conjugates
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Rooseboom, Martijn, Vermeulen, Nico P.E., and Commandeur, Jan N.M.
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- 2002
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20. Modes of action considerations in threshold expectations for health effects of benzene.
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North, Colin M., Rooseboom, Martijn, Kocabas, Neslihan Aygun, Schnatter, A. Robert, Faulhammer, Frank, and Williams, Stephen D
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REACTIVE oxygen species , *THRESHOLD limit values (Industrial toxicology) , *BENZENE , *DNA topoisomerase II , *ACUTE myeloid leukemia , *BENZENE derivatives - Abstract
• Mutagenic mechanism, chemistry, and dose rate effects factor into benzene MOA. • Mechanistic and empirical evidence assist benzene MOA assessment. • Benzene MOA supports expectation of a carcinogenicity threshold. Understanding the Mode of Action (MOA) for a chemical can help guide decisions in development of Occupational Exposure Limits (OELs). Where sufficient information exists, it can provide the OEL developer the basis for selecting either a health-based or risk-based approach. To support the development of an OEL for benzene, scientific information relevant to MOA assessment for risk-based and health-based OEL approaches was reviewed. Direct-acting mutagenicity was considered as a basis for a risk-based OEL, versus MOAs consistent with a health-based approach: indirect mutagenicity via topoisomerase II inhibition, indirect mutagenicity via reactive oxygen species generation, or an immune-based bone marrow dysfunction. Based on the evidence against direct DNA reactivity, threshold expectations for remaining MOAs, and evidence for dose rate affecting acute myeloid leukemia and myelodysplastic syndrome risk, the weight of evidence favors a health-based OEL approach. In the case of benzene, development of an OEL based on observations of earlier key events (i.e. , hematologic changes and genetic toxicity) is anticipated to provide protection from later adverse outcomes such as leukemia. [ABSTRACT FROM AUTHOR]
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- 2020
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21. Derivation of an occupational exposure limit for benzene using epidemiological study quality assessment tools.
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Schnatter, A. Robert, Rooseboom, Martijn, Kocabas, Neslihan Aygun, North, Colin M., Dalzell, Abigail, Twisk, Johannes, Faulhammer, Frank, Rushton, Erik, Boogaard, Peter J., Ostapenkaite, Viktorija, and Williams, Stephen D.
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THRESHOLD limit values (Industrial toxicology) , *BENZENE , *GENETIC toxicology , *BONE marrow , *OCCUPATIONAL exposure - Abstract
• MOA points to a benzene OEL based on haematotoxicity and genotoxicity. • Quality scoring methods allow OELs to be based on methodologically-sound studies. • Benzene OEL of 0.25 ppm (8 h TWA) is well supported by the higher quality data from worker studies. This paper derives an occupational exposure limit for benzene using quality assessed data. Seventy-seven genotoxicity and 36 haematotoxicity studies in workers were scored for study quality with an adapted tool based on that of Vlaanderen et al., 2008 (Environ Health. Perspect. 116 1700−5). These endpoints were selected as they are the most sensitive and relevant to the proposed mode of action (MOA) and protecting against these will protect against benzene carcinogenicity. Lowest and No- Adverse Effect Concentrations (LOAECs and NOAECs) were derived from the highest quality studies (i.e. those ranked in the top tertile or top half) and further assessed as being "more certain" or "less certain". Several sensitivity analyses were conducted to assess whether alternative "high quality" constructs affected conclusions. The lowest haematotoxicity LOAECs showed effects near 2 ppm (8 h TWA), and no effects at 0.59 ppm. For genotoxicity, studies also showed effects near 2 ppm and showed no effects at about 0.69 ppm. Several sensitivity analyses supported these observations. These data define a benzene LOAEC of 2 ppm (8 h TWA) and a NOAEC of 0.5 ppm (8 h TWA). Allowing for possible subclinical effects in bone marrow not apparent in studies of peripheral blood endpoints, an OEL of 0.25 ppm (8 h TWA) is proposed. [ABSTRACT FROM AUTHOR]
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- 2020
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22. Imidazolylpyrimidine based CXCR2 chemokine receptor antagonists
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Ho, Koc-Kan, Auld, Douglas S., Bohnstedt, Adolph C., Conti, Paolo, Dokter, Wim, Erickson, Shawn, Feng, Daming, Inglese, Jim, Kingsbury, Celia, Kultgen, Steven G., Liu, Rong-Qiang, Masterson, Christopher M., Ohlmeyer, Michael, Rong, Yajing, Rooseboom, Martijn, Roughton, Andrew, Samama, Philippe, Smit, Martin-Jan, Son, Ellen, van der Louw, Jaap, Vogel, Gerard, Webb, Maria, Wijkmans, Jac, and You, Ming
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- 2006
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23. Human CXCR2 (hCXCR2) takes over functionalities of its murine homolog in hCXCR2 knockin mice.
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Mihara, Katsuhiro, Smit, Martin-Jan, Krajnc-Franken, Magda, Gossen, Jan, Rooseboom, Martijn, and Dokter, Wim
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- 2005
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24. A weight of evidence review on the mode of action, adversity, and the human relevance of xylene’s observed thyroid effects in rats.
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Morris-Schaffer, Keith, Higgins, Larry, Kocabas, Neslihan Aygun, Faulhammer, Frank, Cordova, Alexandra, Freeman, Elaine, Kamp, Hennicke, Nahar, Muna, Richmond, Emily, and Rooseboom, Martijn
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TOXICITY testing , *LIVER enzymes , *ENDOCRINE disruptors , *THYROID hormones , *XYLENE - Abstract
AbstractXylene substances have wide industrial and consumer uses and are currently undergoing dossier and substance evaluation under Registration, Evaluation, Authorization and Restriction of Chemicals (REACH) for further toxicological testing including consideration of an additional neurotoxicological testing cohort to an extended one-generation reproduction toxicity (EOGRT) study. New repeated dose study data on xylenes identify the thyroid as a potential target tissue, and therefore a weight of evidence review is provided to investigate whether or not xylene-mediated changes on the hypothalamus-pituitary-thyroid (HPT) axis are secondary to liver enzymatic induction and are of a magnitude that is relevant for neurological human health concerns. Multiple published studies confirm xylene-mediated increases in liver weight, hepatocellular hypertrophy, and liver enzymatic induction
via the oral or inhalation routes, including an increase in uridine 5′-diphospho-glucuronosyltransferase (UDP-GT) activity, the key step in thyroid hormone metabolism in rodents. Only minimal to slight increases in thyroid follicular cell hypertrophy have been observed in some xylene repeated dose studies, with no associated robust or consistent perturbance of thyroid hormone changes across the studies or carried through to offspring indicating adaptive homeostatic maintenance of the HPT axis. Also importantly,in vitro human cell line data from the United States Environmental Protection Agency (US EPA) Toxicity Forecasting (ToxCast) provides supporting evidence of xylene’s inability to directly perturb thyroidal functionality. A further supplemental in-depth metabolomics analysis (MetaMap®Tox) of xylene showed a tentative match to compounds that also demonstrate extra-thyroidal effects on the HPT axis as a consequence of liver enzyme induction. Lastly, the slight HPT axis changes mediated by xylene were well-below the published literature thresholds for developmental neurotoxicological outcomes established for thyroidal changes in animals and humans. In summary, the data and various lines of scientific evidence presented herein individually and collectively demonstrate that xylene’s mediated changes in the HPT axis,via a secondary extra-thyroidal MOA (i.e. liver enzyme induction), do not raise a human health concern with regards to developmental neurotoxicity. As such, the available toxicological data do not support the classification of xylene as a known or suspected endocrine disruptor, specifically through the thyroid modality, per Regulations Commission Delegated Regulation (EU) 2023/707 of 19 December 2022 amending Regulation (EC) No 1272/2008 and do not support the need for a neurotoxicological cohort evaluation in any subsequent EOGRTS. [ABSTRACT FROM AUTHOR]- Published
- 2025
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25. Key event-informed risk models for benzene-induced acute myeloid leukaemia.
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North, Colin M., Schnatter, A. Robert, Rooseboom, Martijn, Aygun Kocabas, Neslihan, Dalzell, Abigail, and Williams, Stephen D.
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ACUTE myeloid leukemia , *MYELODYSPLASTIC syndromes , *OCCUPATIONAL exposure , *BENZENE derivatives , *INFORMATION modeling - Abstract
• Key events in a mode of action can inform risk model shape. • Flexible approaches to modifying risk model shape are demonstrated and discussed. • Benzene leukemia risk models can incorporate information on hematotoxicity and genetic toxicity. Occupational exposure to benzene at levels of 10 ppm or more has been associated with increased risk of acute myeloid leukaemia (AML). The mode of action (MOA) for AML development leading to mortality is anticipated to include multiple earlier key events, which can be observed in hematotoxicity and genetic toxicity in peripheral blood of exposed workers. Prevention of these early events would lead to prevention of the apical, adverse outcomes, the morbidity and mortality caused by the myelodysplastic syndromes (MDS) and AML. Incorporation of key event information should modify the risk model, but few modification approaches have been suggested. To that end, two approaches to risk model modification are described that use sub-linear and segmented linear increases in risk below key events, while maintaining a linear increase in AML mortality risk beginning at 2 ppm, the lowest observed adverse effect concentration (LOAEC) identified for hemato- and geno- toxicity in high quality studies of human occupational exposure. Below 2 ppm two different modification approaches to quantitative risk models were applied: a continuously decreasing slope model and a segmented modification in slope. These two approaches provide greater flexibility to incorporate MOA information in risk model development and selection. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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26. The short-term toxicity and metabolome of dicyclopentadiene.
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van Ravenzwaay, Bennard, Kocabas, Neslihan Aygun, Faulhammer, Frank, Flick, Burkhard, Giri, Varun, Sperber, Saskia, Penman, Michael G., Higgins, Larry G., Kamp, Hennicke, and Rooseboom, Martijn
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DICYCLOPENTADIENE , *ADRENAL glands , *IN vivo toxicity testing , *WEIGHT gain , *PATHOLOGICAL physiology , *HEPATOTOXICOLOGY , *METABOLOMICS - Abstract
Dicyclopentadiene (DCPD) was investigated in a 14-day oral rat toxicity study based on the OECD 407 guideline in combination with plasma metabolomics. Wistar rats received the compound daily via gavage at dose levels of 0, 50 and 150 mg/kg bw. The high dose induced transient clinical signs of toxicity and in males only reduced body weight gain. High dose liver changes were characterized by altered clinical chemistry parameters in both sexes and pathological changes in females. In high dose males an accumulation of alpha-2 u-globulin in the kidney was noted. Comparing the DCPD metabolome with previously established specific metabolome patterns in the MetaMap® Tox data base suggested that the high dose would result in liver enzyme induction leading to increased breakdown of thyroid hormones for males and females. An indication for liver toxicity in males was also noted. Metabolomics also suggested an effect on the functionality of the adrenals in high dose males, which together with published data, is suggestive of a stress related effect in this organ. The results of the present 14-day combined toxicity and metabolome investigations were qualitatively in line with literature data from subchronic oral studies in rats with DCPD. Importantly no other types of organ toxicity, or hormone dysregulation beyond the ones associated with liver enzyme induction and stress were indicated, again in line with results of published 90-day studies. It is therefore suggested that short term "smart" studies, combining classical toxicity with 'omics technologies, could be a 2 R (refine and reduce) new approach method allowing for the reduction of in vivo toxicity testing. • Dicyclopentadiene 14-day toxicity in rats target organs: liver and kidney. • Metabolomics correctly predicts subchronic DCPD toxicity. • "smart" in vivo studies are a NAM that can reduce the need for subchronic in vivo testing. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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- View/download PDF
27. Modes of Action Considerations in Threshold Expectations for Health Effects of Benzene
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Neslihan Aygun Kocabas, Martijn Rooseboom, Stephen D. Williams, Frank Faulhammer, A. Robert Schnatter, Colin M. North, North, Colin M, Rooseboom, Martijn, Aygun Kocabas, Neslihan, Schnatter, A. Robert, Faulhammer, Frank, and Williams, Stephen D
- Subjects
0301 basic medicine ,Adverse outcomes ,health-based limit ,Toxicology ,Immune Dysfunction ,Bioinformatics ,Risk Assessment ,03 medical and health sciences ,benzene ,immune dysfunction ,0302 clinical medicine ,mode of action ,Occupational Exposure ,Medicine ,Humans ,Occupational exposure limit ,Threshold Limit Values ,Mode of action ,Weight of evidence ,business.industry ,genotoxicity ,General Medicine ,030104 developmental biology ,Reactive oxygen species generation ,occupational exposure limit ,Occupational exposure ,Dose rate ,business ,030217 neurology & neurosurgery ,Mutagens - Abstract
Understanding the Mode of Action (MOA) for a chemical can help guide decisions in development of Occupational Exposure Limits (OELs). Where sufficient information exists, it can provide the OEL developer the basis for selecting either a health-based or risk-based approach. To support the development of an OEL for benzene, scientific information relevant to MOA assessment for risk-based and health-based OEL approaches was reviewed. Direct-acting mutagenicity was considered as a basis for a risk-based OEL, versus MOAs consistent with a health-based approach: indirect mutagenicity via topoisomerase II inhibition, indirect mutagenicity via reactive oxygen species generation, or an immune-based bone marrow dysfunction. Based on the evidence against direct DNA reactivity, threshold expectations for remaining MOAs, and evidence for dose rate affecting acute myeloid leukemia and myelodysplastic syndrome risk, the weight of evidence favors a health-based OEL approach. In the case of benzene, development of an OEL based on observations of earlier key events (i.e., hematologic changes and genetic toxicity) is anticipated to provide protection from later adverse outcomes such as leukemia.
- Published
- 2020
- Full Text
- View/download PDF
28. DARTpaths, an in silico platform to investigate molecular mechanisms of compounds.
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Bhalla D, Steijaert MN, Poppelaars ES, Teunis M, van der Voet M, Corradi M, Dévière E, Noothout L, Tomassen W, Rooseboom M, Currie RA, Krul C, Pieters R, van Noort V, and Wildwater M
- Subjects
- Software, Algorithms
- Abstract
Summary: Xpaths is a collection of algorithms that allow for the prediction of compound-induced molecular mechanisms of action by integrating phenotypic endpoints of different species; and proposes follow-up tests for model organisms to validate these pathway predictions. The Xpaths algorithms are applied to predict developmental and reproductive toxicity (DART) and implemented into an in silico platform, called DARTpaths., Availability and Implementation: All code is available on GitHub https://github.com/Xpaths/dartpaths-app under Apache license 2.0, detailed overview with demo is available at https://www.vivaltes.com/dartpaths/., Supplementary Information: Supplementary data are available at Bioinformatics online., (© The Author(s) 2022. Published by Oxford University Press.)
- Published
- 2023
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29. Functional replacement of murine CXCR2 by its human homologue in the development of atherosclerosis in LDLR knockout mice.
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Mihara K, Spansier M, Rooseboom M, Smit MJ, and Dokter W
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- Animals, Apolipoproteins E physiology, Male, Mice, Mice, Knockout, Atherosclerosis etiology, Receptors, Interleukin-8B physiology, Receptors, LDL physiology
- Abstract
The CXC chemokine receptor CXCR2 has been implicated in the pathogenesis of several chronic diseases including atherosclerosis. To enable animal studies towards understanding the role of human CXCR2 (hCXCR2) in disease development, we previously generated hCXCR2 knockin (hCXCR2(+/+)) mice. We have demonstrated that the phenotype and the acute immune response of the hCXCR2(+/+) mice was identical to that of wild-type mice, indicating that hCXCR2 indeed takes over the function of endogenous mouse CXCR2 (mCXCR2). In the present paper, we extend these findings by studying whether hCXCR2 functionally replaces the role of mCXCR2 in a chronic disease model for atherosclerosis. We first defined which of two well-described atherosclerosis models (ApoE(-/-) or LDLR(-/-) mice) is most suited for this purpose. When expression of mCXCR2 and that of its ligands in atherosclerotic lesions were compared in these mice, increased expression levels were observed only in LDLR(-/-) mice. Further, cultured atherosclerotic aortas from LDLR(-/-) mice did secrete significantly higher levels of CXCR2 ligands compared to aortas from healthy controls. Since these results support the role of CXCR2 in the atherogenesis in the LDLR(-/-) mice, double mutant hCXCR2(+/+)/LDLR(-/-) mice were generated and diet-induced atherosclerosis in these mice was compared to that in LDLR(-/-) mice. Upon an atherogenic diet, the hCXCR2(+/+)/LDLR(-/-) mice developed plaque lesions in a similar manner to those in LDLR(-/-) mice, indicating successful functional replacement of mCXCR2 by hCXCR2 in this disease model. We conclude that hCXCR2(+/+)/LDLR(-/-) mice present an attractive model to study the role of hCXCR2 in atherosclerosis development and for future testing of novel pharmaceuticals designed to antagonize hCXCR2.
- Published
- 2007
- Full Text
- View/download PDF
30. Enzyme-catalyzed activation of anticancer prodrugs.
- Author
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Rooseboom M, Commandeur JN, and Vermeulen NP
- Subjects
- Animals, Antineoplastic Agents therapeutic use, Catalysis drug effects, Enzyme Activation drug effects, Humans, Prodrugs therapeutic use, Antineoplastic Agents metabolism, Neoplasms drug therapy, Neoplasms enzymology, Prodrugs metabolism
- Abstract
The rationale fo the development of prodrugs relies upon delivery of higher concentrations of a drug to target cells compared to administration of the drug itself. In the last decades, numerous prodrugs that are enzymatically activated into anti-cancer agents have been developed. This review describes the most important enzymes involved in prodrug activation notably with respect to tissue distribution, up-regulation in tumor cells and turnover rates. The following endogenous enzymes are discussed: aldehyde oxidase, amino acid oxidase, cytochrome P450 reductase, DT-diaphorase, cytochrome P450, tyrosinase, thymidylate synthase, thymidine phosphorylase, glutathione S-transferase, deoxycytidine kinase, carboxylesterase, alkaline phosphatase, beta-glucuronidase and cysteine conjugate beta-lyase. In relation to each of these enzymes, several prodrugs are discussed regarding organ- or tumor-selective activation of clinically relevant prodrugs of 5-fluorouracil, axazaphosphorines (cyclophosphamide, ifosfamide, and trofosfamide), paclitaxel, etoposide, anthracyclines (doxorubicin, daunorubicin, epirubicin), mercaptopurine, thioguanine, cisplatin, melphalan, and other important prodrugs such as menadione, mitomycin C, tirapazamine, 5-(aziridin-1-yl)-2,4-dinitrobenzamide, ganciclovir, irinotecan, dacarbazine, and amifostine. In addition to endogenous enzymes, a number of nonendogenous enzymes, used in antibody-, gene-, and virus-directed enzyme prodrug therapies, are described. It is concluded that the development of prodrugs has been relatively successful; however, all prodrugs lack a complete selectivity. Therefore, more work is needed to explore the differences between tumor and nontumor cells and to develop optimal substrates in terms of substrate affinity and enzyme turnover rates fo prodrug-activating enzymes resulting in more rapid and selective cleavage of the prodrug inside the tumor cells.
- Published
- 2004
- Full Text
- View/download PDF
31. Comparative study on the bioactivation mechanisms and cytotoxicity of Te-phenyl-L-tellurocysteine, Se-phenyl-L-selenocysteine, and S-phenyl-L-cysteine.
- Author
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Rooseboom M, Vermeulen NP, Durgut F, and Commandeur JN
- Subjects
- Animals, Biotransformation, Cytochrome P-450 CYP1A1 antagonists & inhibitors, D-Amino-Acid Oxidase metabolism, Enzyme Activation drug effects, Enzyme Inhibitors pharmacology, Glutathione Transferase metabolism, Hepatocytes drug effects, Hepatocytes metabolism, Humans, Kidney enzymology, Kinetics, Lyases metabolism, Male, Microsomes, Liver drug effects, Microsomes, Liver enzymology, Organometallic Compounds pharmacokinetics, Rats, Rats, Wistar, Tellurium pharmacokinetics, Cysteine analogs & derivatives, Cysteine pharmacokinetics, Cysteine toxicity, Organometallic Compounds toxicity, Selenocysteine analogs & derivatives, Selenocysteine pharmacokinetics, Selenocysteine toxicity, Tellurium toxicity
- Abstract
Tellurium compounds are effective antioxidants and chemoprotectors, even more active than their selenium and sulfur analogues. In addition to these properties, some selenium compounds, such as selenocysteine Se-conjugates, possess significant chemopreventive and antitumor activities, and selenol metabolites are considered as active species. In the present study, we have synthesized Te-phenyl-L-tellurocysteine and evaluated its bioactivation and cytotoxicity. The activities of this compound were compared with those of the corresponding selenium and sulfur analogues. Te-Phenyl-L-tellurocysteine is bioactivated into its corresponding tellurol, as detected by GC-MS, by cysteine conjugate beta-lyase and amino acid oxidase, analogously to what has been shown previously for Se-phenyl-L-selenocysteine. The rate of beta-elimination may reflect the bond strength of the corresponding C-S, C-Se, and C-Te bond. Bioactivation of Te-phenyl-L-tellurocysteine and its selenium and sulfur analogues by oxidative enzymes was evaluated by measuring NADPH-dependent activation of hepatic mGST and inhibition of EROD. Te-Phenyl-L-tellurocysteine and Se-phenyl-L-selenocysteine displayed strong and time-dependent mGST activation, while S-phenyl-L-cysteine resulted in no significant activation. Te-Phenyl-L-tellurocysteine was also a strong inhibitor of EROD activity. In addition to EROD inhibition, Te-phenyl-L-tellurocysteine was the strongest inhibitor of several human cytochrome P450 isoenzymes followed by Se-phenyl-L-selenocysteine, while S-phenyl-L-cysteine was the weakest inhibitor. Interestingly, Te-phenyl-L-tellurocysteine selectively inhibited cytochrome P450 1A1 directly, which is, for example, responsible for the activation of several procarcinogens. Preliminary cytotoxicity studies with Te-phenyl-L-tellurocysteine in freshly isolated rat hepatocytes showed a time-dependent depletion of GSH and LDH leakage comparable with the relatively nontoxic drug paracetamol, while the selenium and sulfur analogues were nontoxic toward rat hepatocytes. In conclusion, because the chemopreventive and antitumor activities of selenium compounds are thought to be mediated via their selenol metabolites and tellurium compounds might be even more active than selenium compounds, tellurocysteine Te-conjugates might be an interesting novel class of prodrugs for the formation of biologically active tellurols.
- Published
- 2002
- Full Text
- View/download PDF
32. Beta-lyase-dependent attenuation of cisplatin-mediated toxicity by selenocysteine Se-conjugates in renal tubular cell lines.
- Author
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Rooseboom M, Schaaf G, Commandeur JN, Vermeulen NP, and Fink-Gremmels J
- Subjects
- Animals, Antineoplastic Agents toxicity, Cell Line, Cell Survival drug effects, Cell Survival physiology, Dose-Response Relationship, Drug, Kidney Tubules, Proximal cytology, Kidney Tubules, Proximal enzymology, LLC-PK1 Cells, Lyases pharmacology, Lyases toxicity, Rats, Reactive Oxygen Species metabolism, Selenium metabolism, Selenium pharmacology, Selenium toxicity, Selenocysteine pharmacology, Selenocysteine toxicity, Swine, Cisplatin toxicity, Kidney Tubules, Proximal drug effects, Lyases metabolism, Selenocysteine metabolism
- Abstract
Cisplatin [cis-diamminedichloroplatinum(II)] is a widely used antitumor drug with dose-limiting nephrotoxic side effects due to selective toxicity to the proximal tubule. In the present study, the chemoprotective potential of three selenocysteine Se-conjugates, Se-methyl-L-selenocysteine, Se-(2-methoxyphenyl)-L-selenocysteine, and Se-(2-chlorobenzyl)-L-selenocysteine, belonging to three structural classes, against the nephrotoxic effects of cisplatin was investigated. Selenocysteine Se-conjugates have previously been proposed as kidney-selective prodrugs of pharmacologically active selenols because of their active uptake and bioactivation by cysteine conjugate beta-lyases in the kidney. To elucidate whether chemoprotection is beta-lyase-dependent wild-type LLC-PK(1) cells, possessing a very low beta-lyase activity, and LLC-PK(1) cells stably transfected with full-length cDNA coding for rat kidney cysteine conjugate beta-lyase/glutamine transaminase K (R1J) were used. The results indicate that all three selenocysteine Se-conjugates were able to attenuate the cisplatin-induced loss of viability in R1J cells but not in the parental LLC-PK(1) cells, as determined by the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay and neutral red uptake. In addition, cisplatin-induced reactive oxygen species (ROS) production was determined using 2',7'-dichlorodihydrofluorescein diacetate. The selenocysteine Se-conjugates were able to decrease ROS levels after cisplatin exposure in both cell types. However, this ROS-protective effect was more profound in R1J cells. Se-Methyl-L-selenocysteine provided the strongest protection. The protective activity against cisplatin-induced cytotoxicity and ROS generation was blocked by aminooxyacetic acid, a selective inhibitor of pyridoxal 5'-phosphate-dependent cysteine conjugate beta-lyases, further supporting the role of beta-lyase in the observed chemoprotection. The precise molecular mechanism by which selenols, generated by beta-lyase, provide protection against cisplatin-induced cytotoxicity, however, remains to be established.
- Published
- 2002
- Full Text
- View/download PDF
33. Induction of glutathione-S-transferase mRNA levels by chemopreventive selenocysteine Se-conjugates.
- Author
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't Hoen PA, Rooseboom M, Bijsterbosch MK, van Berkel TJ, Vermeulen NP, and Commandeur JN
- Subjects
- Animals, Cytochrome P-450 Enzyme System biosynthesis, Enzyme Induction drug effects, Hepatocytes drug effects, Hepatocytes metabolism, Lyases metabolism, RNA, Messenger biosynthesis, RNA, Messenger drug effects, Rats, Selenium Compounds metabolism, Selenocysteine chemistry, Tumor Cells, Cultured, Glutathione Transferase biosynthesis, Selenocysteine pharmacology
- Abstract
Several selenocysteine Se-conjugates (SeCys-conjugates) prevent against chemically induced carcinogenesis. Bioactivation to selenols (RSeH) by beta-lyases is thought to be critical, but the mechanism of tumor suppression remains unclear. Induction of phase II biotransformation enzymes is a possible mechanism of chemoprevention. In this study, we evaluated the isoform-selective induction of glutathione-S-transferase (GST) at the mRNA level using a quantitative reverse transcriptase polymerase chain reaction assay. In cultured primary rat hepatocytes and H35 Reuber rat hepatoma cells, SeCys-conjugates time-dependently increased mRNA levels of GST Alpha isoforms and GST Pi, but not of GST Mu isoforms. Se-allyl-L-selenocysteine, the most potent chemopreventive SeCys-conjugate so far known, was also the most active GST inducer. After exposure for 24hr, it elevated GSTA2, GSTA3, GSTA5, and GSTP mRNA levels in primary hepatocytes 3.2+/-0.4-, 1.9+/-0.1-, 4.3+/-0.3-, and 2.9+/-0.3-fold, respectively. Se-allyl-D-selenocysteine was significantly less active, suggesting that stereoselective conversion of SeCys-conjugates to selenols is involved in GST induction. In H35 Reuber hepatoma cells, where conversion of SeCys-conjugates to selenols was 2-6-fold lower than in primary hepatocytes, GST induction was also much lower than in primary hepatocytes. SeCys-conjugates did not induce cytochrome P450 1A1, 2B1/2, or 3A1. This indicates that SeCys-conjugates are monofunctional inducers of phase II biotransformation enzymes. The present results suggest that induction of GST expression contributes to the chemopreventive activity of SeCys-conjugates.
- Published
- 2002
- Full Text
- View/download PDF
34. Enzymatic pathways of beta elimination of chemopreventive selenocysteine Se conjugates.
- Author
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Rooseboom M, Vermeulen NP, and Commandeur JN
- Subjects
- Amino Acid Oxidoreductases metabolism, Animals, Antineoplastic Agents metabolism, Cytosol metabolism, Humans, In Vitro Techniques, Kidney metabolism, Kinetics, L-Amino Acid Oxidase, Lyases metabolism, Microsomes, Liver metabolism, Oxygenases metabolism, Rats, Recombinant Proteins metabolism, Transaminases metabolism, Selenocysteine metabolism
- Published
- 2002
- Full Text
- View/download PDF
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