24 results on '"Roest C"'
Search Results
2. AI-assisted biparametric MRI surveillance of prostate cancer: feasibility study
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Roest, C., Kwee, T.C., Saha, A., Fütterer, J.J., Yakar, D., and Huisman, H.
- Published
- 2023
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3. GROWING SALT-TOLERANT POTATOES WITH BRACKISH WATER WITH DRIP IRRIGATION.
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Wolters, W., Roest, C. W. J., Smit, A. A. M. F. R., Blom-Zandstra, M., Heselmans, G., Nannes, L., Ahmed, Moh., and El Wagieh, Hakiem
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SOIL moisture , *POTATOES , *PLANT breeding , *SOIL salinity , *SELF-reliant living , *FOOD production - Abstract
North and south of the equator a band with water-scarce countries is found (Middle East, North Africa, Asia, the Americas). Water-scarce areas also frequently have to deal with soil salinity and brackish water conditions. Due to these problems food self-sufficiency is at stake in many of these countries. A logical choice for Governments therefore would be to focus on food crops that have a low water footprint and that are salt tolerant. Potato is the champion staple crop with a high nutritional value and a low water footprint. Potato is therefore an excellent crop to be grown under water scarce conditions. Salt tolerant potatoes are not yet commercially available. Egypt is a typical example of a water scarce country with ample brackish water available and with a considerable food production deficit. Egypt has a strong potato growing and processing industry. Potato growers are running into the problems of increasing soil and water salinity. The paper reports on the results of a pilot project that combines the “more crop per drop” expertise of Wageningen UR with expertise on highly advanced soil moisture monitoring systems (DACOM) and innovative potato breeding (MEIJER), reinforced by the knowledge of local market and crop cultivation practices brought in by the Egyptian partners, the „Plant Systems‟ company and the Domiatec Group. The pilot project had as main objective to select for salt tolerant potato cultivars in order to make brackish waters available for food production. Results include that (i) several potato varieties were found to perform well, for irrigating with water of a salinity up to 7.5 dS/m. Adequate water and crop management are a pre-requisite for this; (ii) there are substantial differences between potato varieties. This offers opportunities for improvement by plant breeders; (iii) soil moisture monitoring has been extended with monitoring of soil salinity and sensors proved to be important tools to extend knowledge of sols conditions. Placement of sensors in combination with non-uniform water application is not easy. [ABSTRACT FROM AUTHOR]
- Published
- 2016
4. Effect of model selection on computed water balance components.
- Author
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Jhorar, Raj Kumar, Smit, A. A. M. F. R., and Roest, C. W. J.
- Published
- 2009
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5. Daily rat tibial growth in vivo following hypothalamic sex reversal with neonatal and pubertal treatments with gonadal steroids.
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Rol De Lama, M. A., Roest, C., Rolf, K., Rautenberg, M., Tresguerres, J. A. F., and Ariznavarreta, C.
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GROWTH , *SOMATOTROPIN , *STEROIDS , *SECRETION ,SEX differences (Biology) - Abstract
Summary. A striking sex-related difference in postpubertal growth and growth hormone (GH) secretory pattern in the rat has been described. Although this sexual dimorphism seems to be determined by the neonatal effects of gonadal steroids on the hypothalamus, peripubertal exposure to steroids also plays an important role. In order to study the real influence of the hypothalamic sex and/or peripubertal gonadal steroids, the growth pattern of female and male rats in response to neonatal and peripubertal sexual steroid treatments was studied using microknemometry, a technique that allows non-invasive daily measurements of rat tibial growth rate. Neonatal steroid environment in males was modified by castration on day 1, whereas in females it was changed by a single neonatal testosterone administration on day 5 followed by castration at 13 days of age. From the onset of puberty to adulthood, both female and male animals received testosterone or estrogens, respectively. Neonatal treatment alone, i.e. androgenization of female and castration of male rats, were only able to induce a partial reversal of the original sex-dependent growth pattern. Additional peripubertal treatments achieved a complete change in the sex-linked growth pattern. Consistent with the effects observed on growth, the pituitary GH concentration was significantly increased in females, and diminished in males, when they were treated both at the neonatal and peripubertal stages. However, only this latter group, whose growth was more seriously compromised, showed decreased plasma insulin-like growth factor-I (IGF-I) levels. In conclusion, a complete feminization of male tibial growth pattern or masculinization of female pattern can only be achieved by maintaining the new steroid environment from puberty to adulthood. [ABSTRACT FROM AUTHOR]
- Published
- 2001
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6. Guastalla Due, ricerca sui effetti
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van der Ploeg, J.D., Benvenuti, B., Sauda, E., Antonello, S., and de Roest, C.
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Rural Development Sociology ,Life Science ,Leerstoelgroep Rurale ontwikkelingssociologie - Published
- 1988
7. The existing state of the livestock production industry in Europe
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Lanari, D and De Roest, C
- Published
- 1982
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8. Nitrogen and phosphorus losses from agriculture into surface waters;the effects of policies and measures in The Netherlands
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Oenema, O. and Roest, C. W. J.
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AGRICULTURE , *EUTROPHICATION , *GOVERNMENT policy - Abstract
The increased input of fertilizers and animal wastes after 1950 has boosted agricultural crop production to a high level in many industrialized countries, but it has also contributed to increased nitrogen and phosphorus emissions from agriculture to groundwaters and surface waters. This paper summarizes the pathways and controls of nitrogen and phosphorus losses to surface waters, and it presents estimates andpredictions of the losses from agricultural soils in The Netherlandsinto surface waters, before and after the implementation of policiesand measures to reduce nutrient losses from agriculture. Implementation of the nutrient accounting system MINAS, aiming at a step-wise lowering of nitrogen and phosphorus surpluses at farm level, will decrease the total nitrogen and phosphorus surpluses between the years 1985 and 2008 by 58 and 82%, respectively. These large decreases are theresult of a strong decrease in the input via fertilizers and animal wastes, combined with only a minor decrease in the output via harvested products. Nitrogen emissions from agricultural land to surface waters will decrease by 38% between 1985 and 2008. Phosphorus emissions from agricultural land to surface waters are expected not to decreaseon the short term. [ABSTRACT FROM AUTHOR]
- Published
- 1998
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9. Leaching of nitrate from agriculture to groundwater: the effect of policies and measures in the Netherlands
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Boers, P. C. M., Schroder, J. J., Oenema, O., Willems, W. J., Roest, C. W. J., van der Meer, H. G., van Eerdt, M. M., and Fraters, B.
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GOVERNMENT policy ,NITRATES ,AGRICULTURE ,GROUNDWATER pollution - Abstract
Nitrate concentrations in groundwater are correlated with the nitrogen surpluses at the soil surface. In the Netherlands, both nitrogen surpluses of agricultural land and nitrate concentrations in the groundwater of sandy soils are high. At present, nitrate concentrations inthe groundwater of sandy soils exceed the 1980 EC Directive on the Quality of Water Intended for Human Consumption by a factor of 1 to 5.This paper discusses the effects of a series of policies and measures launched by the Dutch government from 1986 onwards to decrease nitrogen losses to acceptable levels. Main focus is on the nitrogen and phosphorus accounting system MINAS, which will be implemented from 1998 onwards. The possible effects of the MINAS policy and measures on the nitrate contamination of groundwater have been examined via whole-farm analyses and simulation models, with a main focus on the nitrateleaky sandy soils and dairy farming systems. With MINAS, all farmershave to account for the nitrogen and phosphorus that is entering andleaving the farm. Further, MINAS includes charged and levy-free surpluses. The height of charges and the height of the levy-free surpluses together regulate the actual nitrogen surpluses at the farms. Levy-free nitrogen surpluses will be lowered step-wise to 100 kg for arable land and 180 kg per ha for grassland in 2008. Following the implementation of the series of policy measures in the late eighties, data statistics indicate that the nitrogen surplus decreased from a mean of347 kg per ha agricultural land 1985 to a mean of 299 kg per ha in 1995. Following the implementation of MINAS, our model predictions indicate that the nitrogen surplus at farm level will decrease further to a mean of 147 kg per ha in 2008, i.e. a reduction of 58% with reference to 1985. Mean nitrate concentrations at the average lowest groundwater level will decrease by 60%. Ultimately, 12% of the agricultural land (on sandy soils) will still have a nitrate concentration in the grou [ABSTRACT FROM AUTHOR]
- Published
- 1998
10. Prostate MRI and artificial intelligence during active surveillance: should we jump on the bandwagon?
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Bozgo V, Roest C, van Oort I, Yakar D, Huisman H, and de Rooij M
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- Humans, Male, Prostatic Neoplasms diagnostic imaging, Magnetic Resonance Imaging methods, Artificial Intelligence, Watchful Waiting methods
- Abstract
Objective: To review the components of past and present active surveillance (AS) protocols, provide an overview of the current studies employing artificial intelligence (AI) in AS of prostate cancer, discuss the current challenges of AI in AS, and offer recommendations for future research., Methods: Research studies on the topic of MRI-based AI were reviewed to summarize current possibilities and diagnostic accuracies for AI methods in the context of AS. Established guidelines were used to identify possibilities for future refinement using AI., Results: Preliminary results show the role of AI in a range of diagnostic tasks in AS populations, including the localization, follow-up, and prognostication of prostate cancer. Current evidence is insufficient to support a shift to AI-based AS, with studies being limited by small dataset sizes, heterogeneous inclusion and outcome definitions, or lacking appropriate benchmarks., Conclusion: The AI-based integration of prostate MRI is a direction that promises substantial benefits for AS in the future, but evidence is currently insufficient to support implementation. Studies with standardized inclusion criteria and standardized progression definitions are needed to support this. The increasing inclusion of patients in AS protocols and the incorporation of MRI as a scheduled examination in AS protocols may help to alleviate these challenges in future studies., Clinical Relevance Statement: This manuscript provides an overview of available evidence for the integration of prostate MRI and AI in active surveillance, addressing its potential for clinical optimizations in the context of established guidelines, while highlighting the main challenges for implementation., Key Points: Active surveillance is currently based on diagnostic tests such as PSA, biopsy, and imaging. Prostate MRI and AI demonstrate promising diagnostic accuracy across a variety of tasks, including the localization, follow-up and risk estimation in active surveillance cohorts. A transition to AI-based active surveillance is not currently realistic; larger studies using standardized inclusion criteria and outcomes are necessary to improve and validate existing evidence., Competing Interests: Compliance with ethical standards Guarantor The scientific guarantor of this publication is Dr. Maarten de Rooij. Conflict of interest V.B., C.R., D.Y., and H.H. have received grants from Siemens Healthineers on the topic of AI in active surveillance. D.Y. is a member of the Scientific Editorial Board for European Radiology (Imaging Informatics and Artificial Intelligence), they have not participated in the selection nor review processes for this article. The remaining authors declare no relationships with any companies, whose products or services may be related to the subject matter of the article. Statistics and biometry No complex statistical methods were necessary for this paper. Informed consent Written informed consent was not required for this study because this is an invited editorial and not the subject of a research article. Ethical approval Institutional Review Board approval was not required because this is an invited editorial and not the subject of a research article. Study subjects or cohorts overlap Not relevant. Methodology Special Report, (© 2024. The Author(s).)
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- 2024
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11. Multimodal AI Combining Clinical and Imaging Inputs Improves Prostate Cancer Detection.
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Roest C, Yakar D, Rener Sitar DI, Bosma JS, Rouw DB, Fransen SJ, Huisman H, and Kwee TC
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- Humans, Male, Retrospective Studies, Aged, Middle Aged, Artificial Intelligence, Deep Learning, Multimodal Imaging methods, Image Interpretation, Computer-Assisted methods, Prostate diagnostic imaging, Prostate pathology, Prostate-Specific Antigen blood, Prostatic Neoplasms diagnostic imaging, Magnetic Resonance Imaging methods
- Abstract
Objectives: Deep learning (DL) studies for the detection of clinically significant prostate cancer (csPCa) on magnetic resonance imaging (MRI) often overlook potentially relevant clinical parameters such as prostate-specific antigen, prostate volume, and age. This study explored the integration of clinical parameters and MRI-based DL to enhance diagnostic accuracy for csPCa on MRI., Materials and Methods: We retrospectively analyzed 932 biparametric prostate MRI examinations performed for suspected csPCa (ISUP ≥2) at 2 institutions. Each MRI scan was automatically analyzed by a previously developed DL model to detect and segment csPCa lesions. Three sets of features were extracted: DL lesion suspicion levels, clinical parameters (prostate-specific antigen, prostate volume, age), and MRI-based lesion volumes for all DL-detected lesions. Six multimodal artificial intelligence (AI) classifiers were trained for each combination of feature sets, employing both early (feature-level) and late (decision-level) information fusion methods. The diagnostic performance of each model was tested internally on 20% of center 1 data and externally on center 2 data (n = 529). Receiver operating characteristic comparisons determined the optimal feature combination and information fusion method and assessed the benefit of multimodal versus unimodal analysis. The optimal model performance was compared with a radiologist using PI-RADS., Results: Internally, the multimodal AI integrating DL suspicion levels with clinical features via early fusion achieved the highest performance. Externally, it surpassed baselines using clinical parameters (0.77 vs 0.67 area under the curve [AUC], P < 0.001) and DL suspicion levels alone (AUC: 0.77 vs 0.70, P = 0.006). Early fusion outperformed late fusion in external data (0.77 vs 0.73 AUC, P = 0.005). No significant performance gaps were observed between multimodal AI and radiologist assessments (internal: 0.87 vs 0.88 AUC; external: 0.77 vs 0.75 AUC, both P > 0.05)., Conclusions: Multimodal AI (combining DL suspicion levels and clinical parameters) outperforms clinical and MRI-only AI for csPCa detection. Early information fusion enhanced AI robustness in our multicenter setting. Incorporating lesion volumes did not enhance diagnostic efficacy., Competing Interests: Conflicts of interest and sources of funding: C.R., T.C.K., D.Y., and H.H. are receiving a grant from Siemens Healthineers. H.H. is receiving a grant from Canon Medical Systems. For the remaining authors, none were declared., (Copyright © 2024 The Author(s). Published by Wolters Kluwer Health, Inc.)
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- 2024
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12. Assessing deep learning reconstruction for faster prostate MRI: visual vs. diagnostic performance metrics.
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van Lohuizen Q, Roest C, Simonis FFJ, Fransen SJ, Kwee TC, Yakar D, and Huisman H
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- Humans, Male, Retrospective Studies, Middle Aged, Aged, Image Interpretation, Computer-Assisted methods, Prostate diagnostic imaging, Prostate pathology, Deep Learning, Prostatic Neoplasms diagnostic imaging, Magnetic Resonance Imaging methods
- Abstract
Objective: Deep learning (DL) MRI reconstruction enables fast scan acquisition with good visual quality, but the diagnostic impact is often not assessed because of large reader study requirements. This study used existing diagnostic DL to assess the diagnostic quality of reconstructed images., Materials and Methods: A retrospective multisite study of 1535 patients assessed biparametric prostate MRI between 2016 and 2020. Likely clinically significant prostate cancer (csPCa) lesions (PI-RADS ≥ 4) were delineated by expert radiologists. T2-weighted scans were retrospectively undersampled, simulating accelerated protocols. DL reconstruction (DLRecon) and diagnostic DL detection (DLDetect) were developed. The effect on the partial area under (pAUC), the Free-Response Operating Characteristic (FROC) curve, and the structural similarity (SSIM) were compared as metrics for diagnostic and visual quality, respectively. DLDetect was validated with a reader concordance analysis. Statistical analysis included Wilcoxon, permutation, and Cohen's kappa tests for visual quality, diagnostic performance, and reader concordance., Results: DLRecon improved visual quality at 4- and 8-fold (R4, R8) subsampling rates, with SSIM (range: -1 to 1) improved to 0.78 ± 0.02 (p < 0.001) and 0.67 ± 0.03 (p < 0.001) from 0.68 ± 0.03 and 0.51 ± 0.03, respectively. However, diagnostic performance at R4 showed a pAUC FROC of 1.33 (CI 1.28-1.39) for DL and 1.29 (CI 1.23-1.35) for naive reconstructions, both significantly lower than fully sampled pAUC of 1.58 (DL: p = 0.024, naïve: p = 0.02). Similar trends were noted for R8., Conclusion: DL reconstruction produces visually appealing images but may reduce diagnostic accuracy. Incorporating diagnostic AI into the assessment framework offers a clinically relevant metric essential for adopting reconstruction models into clinical practice., Clinical Relevance Statement: In clinical settings, caution is warranted when using DL reconstruction for MRI scans. While it recovered visual quality, it failed to match the prostate cancer detection rates observed in scans not subjected to acceleration and DL reconstruction., (© 2024. The Author(s).)
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- 2024
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13. What makes a good scientific presentation on artificial intelligence in medical imaging?
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Fransen SJ, van Lohuizen Q, Roest C, Yakar D, and Kwee TC
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- Humans, Artificial Intelligence, Diagnostic Imaging methods
- Abstract
Purpose: Adequate communication of scientific findings is crucial to enhance knowledge transfer. This study aimed to determine the key features of a good scientific oral presentation on artificial intelligence (AI) in medical imaging., Methods: A total of 26 oral presentations dealing with original research on AI studies in medical imaging at the 2023 RSNA annual meeting were included and systematically assessed by three observers. The presentation quality of the research question, inclusion criteria, reference standard, method, results, clinical impact, presentation clarity, presenter engagement, and the presentation's quality of knowledge transfer were assessed using five-point Likert scales. The number of slides, the average number of words per slide, the number of interactive slides, the number of figures, and the number of tables were also determined for each presentation. Mixed-effects ordinal regression was used to assess the association between the above-mentioned variables and the quality of knowledge transfer of the presentation., Results: A significant positive association was found between the quality of the presentation of the research question and the presentation's quality of knowledge transfer (odds ratio [OR]: 2.5, P = 0.005). The average number of words per slide was significantly negatively associated with the presentation's quality of knowledge transfer (OR: 0.9, P < 0.001). No other significant associations were found., Conclusion: Researchers who orally present their scientific findings in the field of AI and medical imaging should pay attention to clearly communicating their research question and minimizing the number of words per slide to maximize the value of their presentation., Competing Interests: Declaration of competing interest None., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2024
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14. Using deep learning to optimize the prostate MRI protocol by assessing the diagnostic efficacy of MRI sequences.
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Fransen SJ, Roest C, Van Lohuizen QY, Bosma JS, Simonis FFJ, Kwee TC, Yakar D, and Huisman H
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- Humans, Male, Retrospective Studies, Middle Aged, Aged, Image Interpretation, Computer-Assisted methods, Reproducibility of Results, Sensitivity and Specificity, Deep Learning, Prostatic Neoplasms diagnostic imaging, Magnetic Resonance Imaging methods
- Abstract
Purpose: To explore diagnostic deep learning for optimizing the prostate MRI protocol by assessing the diagnostic efficacy of MRI sequences., Method: This retrospective study included 840 patients with a biparametric prostate MRI scan. The MRI protocol included a T2-weighted image, three DWI sequences (b50, b400, and b800 s/mm
2 ), a calculated ADC map, and a calculated b1400 sequence. Two accelerated MRI protocols were simulated, using only two acquired b-values to calculate the ADC and b1400. Deep learning models were trained to detect prostate cancer lesions on accelerated and full protocols. The diagnostic performances of the protocols were compared on the patient-level with the area under the receiver operating characteristic (AUROC), using DeLong's test, and on the lesion-level with the partial area under the free response operating characteristic (pAUFROC), using a permutation test. Validation of the results was performed among expert radiologists., Results: No significant differences in diagnostic performance were found between the accelerated protocols and the full bpMRI baseline. Omitting b800 reduced 53% DWI scan time, with a performance difference of + 0.01 AUROC (p = 0.20) and -0.03 pAUFROC (p = 0.45). Omitting b400 reduced 32% DWI scan time, with a performance difference of -0.01 AUROC (p = 0.65) and + 0.01 pAUFROC (p = 0.73). Multiple expert radiologists underlined the findings., Conclusions: This study shows that deep learning can assess the diagnostic efficacy of MRI sequences by comparing prostate MRI protocols on diagnostic accuracy. Omitting either the b400 or the b800 DWI sequence can optimize the prostate MRI protocol by reducing scan time without compromising diagnostic quality., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2024
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15. The Effect of Image Resampling on the Performance of Radiomics-Based Artificial Intelligence in Multicenter Prostate MRI.
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Bleker J, Roest C, Yakar D, Huisman H, and Kwee TC
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- Male, Humans, Retrospective Studies, Artificial Intelligence, Radiomics, Magnetic Resonance Imaging methods, Prostate diagnostic imaging, Prostate pathology, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms pathology
- Abstract
Background: Single center MRI radiomics models are sensitive to data heterogeneity, limiting the diagnostic capabilities of current prostate cancer (PCa) radiomics models., Purpose: To study the impact of image resampling on the diagnostic performance of radiomics in a multicenter prostate MRI setting., Study Type: Retrospective., Population: Nine hundred thirty patients (nine centers, two vendors) with 737 eligible PCa lesions, randomly split into training (70%, N = 500), validation (10%, N = 89), and a held-out test set (20%, N = 148)., Field Strength/sequence: 1.5T and 3T scanners/T2-weighted imaging (T2W), diffusion-weighted imaging (DWI), and apparent diffusion coefficient maps., Assessment: A total of 48 normalized radiomics datasets were created using various resampling methods, including different target resolutions (T2W: 0.35, 0.5, and 0.8 mm; DWI: 1.37, 2, and 2.5 mm), dimensionalities (2D/3D) and interpolation techniques (nearest neighbor, linear, Bspline and Blackman windowed-sinc). Each of the datasets was used to train a radiomics model to detect clinically relevant PCa (International Society of Urological Pathology grade ≥ 2). Baseline models were constructed using 2D and 3D datasets without image resampling. The resampling configurations with highest validation performance were evaluated in the test dataset and compared to the baseline models., Statistical Tests: Area under the curve (AUC), DeLong test. The significance level used was 0.05., Results: The best 2D resampling model (T2W: Bspline and 0.5 mm resolution, DWI: nearest neighbor and 2 mm resolution) significantly outperformed the 2D baseline (AUC: 0.77 vs. 0.64). The best 3D resampling model (T2W: linear and 0.8 mm resolution, DWI: nearest neighbor and 2.5 mm resolution) significantly outperformed the 3D baseline (AUC: 0.79 vs. 0.67)., Data Conclusion: Image resampling has a significant effect on the performance of multicenter radiomics artificial intelligence in prostate MRI. The recommended 2D resampling configuration is isotropic resampling with T2W at 0.5 mm (Bspline interpolation) and DWI at 2 mm (nearest neighbor interpolation). For the 3D radiomics, this work recommends isotropic resampling with T2W at 0.8 mm (linear interpolation) and DWI at 2.5 mm (nearest neighbor interpolation)., Evidence Level: 3 TECHNICAL EFFICACY: Stage 2., (© 2023 The Authors. Journal of Magnetic Resonance Imaging published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)
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- 2024
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16. Does FDG-PET/CT for incidentally found pulmonary lesions lead to a cascade of more incidental findings?
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Sluijter TE, Yakar D, Roest C, Tsoumpas C, and Kwee TC
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- Humans, Incidental Findings, Retrospective Studies, Positron-Emission Tomography, Radiopharmaceuticals, Positron Emission Tomography Computed Tomography methods, Fluorodeoxyglucose F18
- Abstract
Objective: To determine the frequency, nature, and downstream healthcare costs of new incidental findings that are found on whole-body FDG-PET/CT in patients with a non-FDG-avid pulmonary lesion ≥10 mm that was incidentally found on previous imaging., Materials and Methods: This retrospective study included a consecutive series of patients who underwent whole-body FDG-PET/CT because of an incidentally found pulmonary lesion ≥10 mm., Results: Seventy patients were included, of whom 23 (32.9 %) had an incidentally found pulmonary lesion that proved to be non-FDG-avid. In 12 of these 23 cases (52.2 %) at least one new incidental finding was discovered on FDG-PET/CT. The total number of new incidental findings was 21, of which 7 turned out to be benign, 1 proved to be malignant (incurable metastasized cancer), and 13 whose nature remained unclear. One patient sustained permanent neurologic impairment of the left leg due to iatrogenic nerve damage during laparotomy for an incidental finding which turned out to be benign. The total costs of all additional investigations due to the detection of new incidental findings amounted to €9903.17, translating to an average of €141.47 per whole-body FDG-PET/CT scan performed for the evaluation of an incidentally found pulmonary lesion., Conclusion: In many patients in whom whole-body FDG-PET/CT was performed to evaluate an incidentally found pulmonary lesion that turned out to be non-FDG-avid and therefore very likely benign, FDG-PET/CT detected new incidental findings in our preliminary study. Whether the detection of these new incidental findings is cost-effective or not, requires further research with larger sample sizes., Competing Interests: Declaration of competing interest The authors of this manuscript declare no relationships with any companies, whose products or services may be related to the subject matter of the article., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2024
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17. Assessing Authorship Rates over Time in Original Radiologic Research Publications.
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Kanaan R, Kwee TC, Roest C, and Kwee RM
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- Humans, Authorship, Research Design, Radiology, General Practice
- Abstract
Background Previous studies have shown an increase in the number of authors on radiologic articles between 1950 and 2013, but the cause is unclear. Purpose To determine whether authorship rate in radiologic and general medical literature has continued to increase and to assess study variables associated with increased author numbers. Materials and Methods PubMed/Medline was searched for articles published between January 1998 and October 2022 in general radiology and general medical journals with the top five highest current impact factors. Generalized linear regression analysis was used to calculate adjusted incidence rate ratios (IRRs) for the numbers of authors. Wald tests assessed the associations between study variables and the numbers of authors per article. Combined mixed-effects regression analysis was performed to compare general medicine and radiology journals. Results There were 3381 original radiologic research articles that were analyzed. Authorship rate increased between 1998 (median, six authors; IQR, 4) and 2022 (median, 11 authors; IQR, 8). Later publication year was associated with more authors per article (IRR, 1.02; 95% CI: 1.01, 1.02; P < .001) after adjusting for publishing journal, continent of origin of first author, number of countries involved, PubMed/Medline original article type, study design, number of disciplines involved, multicenter or single-center study, reporting of a priori power calculation, reporting of obtaining informed consent, study sample size, and number of article pages. There were 1250 general medicine original research articles that were analyzed. Later publication year was also associated with more authors after adjustment for the study variables (IRR, 1.04; 95% CI: 1.03, 1.05; P < .001). There was a stronger increase in authorship by publication year for general medicine journals compared with radiology journals (IRR, 1.02; 95% CI: 1.01, 1.02; P < .001). Conclusion An increase in authorship rate was observed in the radiologic and general medical literature between 1998 and 2022, and the number of authors per article was independently associated with later year of publication. © RSNA, 2024 Supplemental material is available for this article. See also the editorial by Arrivé in this issue.
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- 2024
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18. Is radiology's future without medical images?
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Kwee TC, Roest C, and Yakar D
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- Humans, Artificial Intelligence, Forecasting, Radiology
- Abstract
Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
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- 2024
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19. Can we revolutionize diagnostic imaging by keeping Pandora's box closed?
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Kwee TC, Yakar D, Sluijter TE, Pennings JP, and Roest C
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- Humans, Incidental Findings, Diagnostic Imaging
- Abstract
Incidental imaging findings are a considerable health problem, because they generally result in low-value and potentially harmful care. Healthcare professionals struggle how to deal with them, because once detected they can usually not be ignored. In this opinion article, we first reflect on current practice, and then propose and discuss a new potential strategy to pre-emptively tackle incidental findings. The core principle of this concept is to keep the proverbial Pandora's box closed, i.e . to not visualize incidental findings, which can be achieved using deep learning algorithms. This concept may have profound implications for diagnostic imaging.
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- 2023
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20. Focused view CT angiography for selective visualization of stroke related arteries: technical feasibility.
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Roest C, Kloet RW, Lamers MJ, Yakar D, and Kwee TC
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- Humans, Computed Tomography Angiography methods, Tomography, X-Ray Computed methods, Feasibility Studies, Cerebral Arteries diagnostic imaging, Cerebral Angiography methods, Carotid Arteries, Ischemic Stroke, Stroke diagnostic imaging
- Abstract
Objectives: This study investigated the technical feasibility of focused view CTA for the selective visualization of stroke related arteries., Methods: A total of 141 CTA examinations for acute ischemic stroke evaluation were divided into a set of 100 cases to train a deep learning algorithm (dubbed "focused view CTA") that selectively extracts brain (including intracranial arteries) and extracranial arteries, and a test set of 41 cases. The visibility of anatomic structures at focused view and unmodified CTA was assessed using the following scoring system: 5 = completely visible, diagnostically sufficient; 4 = nearly completely visible, diagnostically sufficient; 3 = incompletely visible, barely diagnostically sufficient; 2 = hardly visible, diagnostically insufficient; 1 = not visible, diagnostically insufficient., Results: At focused view CTA, median scores for the aortic arch, subclavian arteries, common carotid arteries, C1, C6, and C7 segments of the internal carotid arteries, V4 segment of the vertebral arteries, basilar artery, cerebellum including cerebellar arteries, cerebrum including cerebral arteries, and dural venous sinuses, were all 4. Median scores for the C2 to C5 segments of the internal carotid arteries, and V1 to V3 segments of the vertebral arteries ranged between 3 and 2. At unmodified CTA, median score for all above-mentioned anatomic structures was 5, which was significantly higher (p < 0.0001) than that at focused view CTA., Conclusion: Focused view CTA shows promise for the selective visualization of stroke-related arteries. Further improvements should focus on more accurately visualizing the smaller and tortuous internal carotid and vertebral artery segments close to bone., Clinical Relevance: Focused view CTA may speed up image interpretation time for LVO detection and may potentially be used as a tool to study the clinical relevance of incidental findings in future prospective long-term follow-up studies., Key Points: • A deep learning-based algorithm ("focused view CTA") was developed to selectively visualize relevant structures for acute ischemic stroke evaluation at CTA. • The elimination of unrequested anatomic background information was complete in all cases. • Focused view CTA may be used to study the clinical relevance of incidental findings., (© 2023. The Author(s).)
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- 2023
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21. A new medical imaging postprocessing and interpretation concept to investigate the clinical relevance of incidentalomas: can we keep Pandora's box closed?
- Author
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Kwee TC, Roest C, Kasalak Ö, Pennings JP, de Jong IJ, and Yakar D
- Subjects
- Humans, Tomography, X-Ray Computed, Adrenal Glands, Pancreas, Liver, Incidental Findings, Clinical Relevance, Adrenal Gland Neoplasms diagnostic imaging
- Abstract
Background: Incidental imaging findings (incidentalomas) are common, but there is currently no effective means to investigate their clinical relevance., Purpose: To introduce a new concept to postprocess a medical imaging examination in a way that incidentalomas are concealed while its diagnostic potential is maintained to answer the referring physician's clinical questions., Material and Methods: A deep learning algorithm was developed to automatically eliminate liver, gallbladder, pancreas, spleen, adrenal glands, lungs, and bone from unenhanced computed tomography (CT). This deep learning algorithm was applied to a separately held set of unenhanced CT scans of 27 patients who underwent CT to evaluate for urolithiasis, and who had a total of 32 incidentalomas in one of the aforementioned organs., Results: Median visual scores for organ elimination on modified CT were 100% for the liver, gallbladder, spleen, and right adrenal gland, 90%-99% for the pancreas, lungs, and bones, and 80%-89% for the left adrenal gland. In 26 out of 27 cases (96.3%), the renal calyces and pelves, ureters, and urinary bladder were completely visible on modified CT. In one case, a short (<1 cm) trajectory of the left ureter was not clearly visible due to adjacent atherosclerosis that was mistaken for bone by the algorithm. Of 32 incidentalomas, 28 (87.5%) were completely concealed on modified CT., Conclusion: This preliminary technical report demonstrated the feasibility of a new approach to postprocess and evaluate medical imaging examinations that can be used by future prospective research studies with long-term follow-up to investigate the clinical relevance of incidentalomas.
- Published
- 2023
- Full Text
- View/download PDF
22. Comparative Performance of Deep Learning and Radiologists for the Diagnosis and Localization of Clinically Significant Prostate Cancer at MRI: A Systematic Review.
- Author
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Roest C, Fransen SJ, Kwee TC, and Yakar D
- Abstract
Background: Deep learning (DL)-based models have demonstrated an ability to automatically diagnose clinically significant prostate cancer (PCa) on MRI scans and are regularly reported to approach expert performance. The aim of this work was to systematically review the literature comparing deep learning (DL) systems to radiologists in order to evaluate the comparative performance of current state-of-the-art deep learning models and radiologists., Methods: This systematic review was conducted in accordance with the 2020 Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) checklist. Studies investigating DL models for diagnosing clinically significant (cs) PCa on MRI were included. The quality and risk of bias of each study were assessed using the checklist for AI in medical imaging (CLAIM) and QUADAS-2, respectively. Patient level and lesion-based diagnostic performance were separately evaluated by comparing the sensitivity achieved by DL and radiologists at an identical specificity and the false positives per patient, respectively., Results: The final selection consisted of eight studies with a combined 7337 patients. The median study quality with CLAIM was 74.1% (IQR: 70.6-77.6). DL achieved an identical patient-level performance to the radiologists for PI-RADS ≥ 3 (both 97.7%, SD = 2.1%). DL had a lower sensitivity for PI-RADS ≥ 4 (84.2% vs. 88.8%, p = 0.43). The sensitivity of DL for lesion localization was also between 2% and 12.5% lower than that of the radiologists., Conclusions: DL models for the diagnosis of csPCa on MRI appear to approach the performance of experts but currently have a lower sensitivity compared to experienced radiologists. There is a need for studies with larger datasets and for validation on external data.
- Published
- 2022
- Full Text
- View/download PDF
23. A deep learning masked segmentation alternative to manual segmentation in biparametric MRI prostate cancer radiomics.
- Author
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Bleker J, Kwee TC, Rouw D, Roest C, Borstlap J, de Jong IJ, Dierckx RAJO, Huisman H, and Yakar D
- Subjects
- Diffusion Magnetic Resonance Imaging methods, Humans, Magnetic Resonance Imaging methods, Male, Prostate diagnostic imaging, Prostate pathology, Retrospective Studies, Deep Learning, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms pathology
- Abstract
Objectives: To determine the value of a deep learning masked (DLM) auto-fixed volume of interest (VOI) segmentation method as an alternative to manual segmentation for radiomics-based diagnosis of clinically significant (CS) prostate cancer (PCa) on biparametric magnetic resonance imaging (bpMRI)., Materials and Methods: This study included a retrospective multi-center dataset of 524 PCa lesions (of which 204 are CS PCa) on bpMRI. All lesions were both semi-automatically segmented with a DLM auto-fixed VOI method (averaging < 10 s per lesion) and manually segmented by an expert uroradiologist (averaging 5 min per lesion). The DLM auto-fixed VOI method uses a spherical VOI (with its center at the location of the lowest apparent diffusion coefficient of the prostate lesion as indicated with a single mouse click) from which non-prostate voxels are removed using a deep learning-based prostate segmentation algorithm. Thirteen different DLM auto-fixed VOI diameters (ranging from 6 to 30 mm) were explored. Extracted radiomics data were split into training and test sets (4:1 ratio). Performance was assessed with receiver operating characteristic (ROC) analysis., Results: In the test set, the area under the ROC curve (AUCs) of the DLM auto-fixed VOI method with a VOI diameter of 18 mm (0.76 [95% CI: 0.66-0.85]) was significantly higher (p = 0.0198) than that of the manual segmentation method (0.62 [95% CI: 0.52-0.73])., Conclusions: A DLM auto-fixed VOI segmentation can provide a potentially more accurate radiomics diagnosis of CS PCa than expert manual segmentation while also reducing expert time investment by more than 97%., Key Points: • Compared to traditional expert-based segmentation, a deep learning mask (DLM) auto-fixed VOI placement is more accurate at detecting CS PCa. • Compared to traditional expert-based segmentation, a DLM auto-fixed VOI placement is faster and can result in a 97% time reduction. • Applying deep learning to an auto-fixed VOI radiomics approach can be valuable., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
24. SIMPLE: assessment of non-point phosphorus pollution from agricultural land to surface waters by means of a new methodology.
- Author
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Schoumans OF, Mol-Dijkstra J, Akkermans LM, and Roest CW
- Subjects
- Monte Carlo Method, Risk Assessment, Soil Pollutants analysis, Water Movements, Agriculture, Environmental Monitoring methods, Models, Theoretical, Phosphorus analysis, Water Pollutants analysis
- Abstract
In the past, environmental Phosphorus (P) parameters like soil P indices have been used to catogorize the potential risk of P losses from agricultural land. In order to assess the actual risk of P pollution of groundwater and surface waters, dynamic process oriented soil and water quality models have been frequently used. Recently, an approximating model for phosphorus, called SIMPLE, has been developed. This model approximates the output from a complex dynamic water quality model. The approximating model is called a metamodel. This simple P-model proves to be a powerful tool for quick assessment of the risk of P pollution from agricultural land to surface waters.
- Published
- 2002
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