106 results on '"R. Gagné"'
Search Results
2. Enantioselective Cascade Cyclization/Protodemetalation of Polyenes with N3Pt2+ Catalysts
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Michel R. Gagné and Ha Nguyen
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electrophilic catalysis ,Chemistry ,protodemetalation ,Enantioselective synthesis ,chemistry.chemical_element ,Nanotechnology ,General Chemistry ,Combinatorial chemistry ,Catalysis ,Cycloisomerization ,Cascade ,cycloisomerization ,Electrophile ,platinum ,Platinum ,Pincer ligand ,Research Article - Abstract
The combination of the N-based pincer ligand PyBOX with Pt2+ leads to new catalysts for the enantioselective cycloisomerization of dienyl- and trienyl-ols. The mechanistic combination of electrophilic cyclization followed by rapid protodemetalation is surprising and leads to a powerful construct for developing new reactions.
- Published
- 2014
3. Computational Studies on the Pt(II)-Catalyzed Cycloisomerization of 1,6-dienes into Bicyclopropanes: A Mechanistic Quandary Evaluated by DFT
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Franziska Bell, Jennifer C. Green, Michel R. Gagné, and Jason P. Holland
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Inorganic Chemistry ,Hexane ,chemistry.chemical_compound ,Cycloisomerization ,chemistry ,Mechanism (philosophy) ,Cyclopropanation ,Computational chemistry ,Organic Chemistry ,Physical and Theoretical Chemistry ,Article ,Catalysis - Abstract
The mechanism of the (bis(phosphanylethyl)phosphane)Pt(2+) catalyzed cyclo-isomerization reaction of 7-methyl-octa-1,6-diene to form 1-isopropylbicyclo[3.1.0]hexane was studied using computational methods. The cyclopropanation step was found to be the turnover-limiting step. The overall reaction proceeds via both a 5-exo and a 6-endo route. W conformations were shown to facilitate cyclopropanation, but do not have any influence on the rate of the 1,2-hydride shifts.
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- 2016
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4. Gold-Catalyzed Diastereoselective Cycloisomerization of Alkylidene-Cyclopropane-Bearing 1,6-Diynes
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Ryan J. Felix, Michel R. Gagné, Laura L. Adduci, and Hongchao Zheng
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Cyclopropanes ,Molecular Structure ,Stereochemistry ,Chemistry ,Stereoisomerism ,General Medicine ,General Chemistry ,Catalysis ,Article ,Cyclopropane ,Diynes ,chemistry.chemical_compound ,Cycloisomerization ,Cyclization ,Alkynes ,Rapid access ,Moiety ,Gold - Abstract
An unprecedented gold-catalyzed diastereoselective cycloisomerization of 1,6-diynes bearing an alkylidene cyclopropane moiety has been developed. This methodology enables rapid access to a variety of 1,2-trimethylenenorbornanes, which are important building blocks in the preparations of abiotic and sesquiterpene core structures.
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- 2014
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5. Catalytic platinum-initiated cation-olefin reactions with alkene terminating groups
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Michel R. Gagné, Nikki A. Cochrane, Joseph G. Sokol, and Jennifer J. Becker
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chemistry.chemical_classification ,Olefin fiber ,Alkene ,Metals and Alloys ,chemistry.chemical_element ,Nanotechnology ,General Chemistry ,Article ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry ,Polymer chemistry ,Materials Chemistry ,Ceramics and Composites ,Platinum ,Carbon - Abstract
A series of phosphine-Pt(2+)-catalysts is reported, which enable the oxidative cascade cyclization of poly-alkene substrates. When the terminus is appropriately arranged and a catalyst reoxidation mediator is included, several polycyclic all carbon skeletons can be obtained. In one example, a chiral P2Pt(+2) catalyst provides up to 79% ee.
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- 2013
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6. σ–π-Diauration as an alternative binding mode for digold intermediates in gold( i ) catalysis
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Dieter Weber and Michel R. Gagné
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Stereochemistry ,Chemistry ,Ligand ,Intramolecular force ,Reactivity (chemistry) ,Nanotechnology ,General Chemistry ,Protonolysis ,Article ,Catalysis - Abstract
While investigating the gold(I)-catalyzed intramolecular hydroarylation of allenes, the structure of a digold-vinyl intermediate was verified. Instead of the previously proposed geminally diaurated binding mode for the digold when L = PPh3, an alternative σ–π-diauration mode was observed with the bulkier ligand L = P(o-Tol)3. Reactivity studies indicate the σ–π-mode has a disproportionate effect on protonolysis reactivity.
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- 2013
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7. Catalytic Enantioselective Cyclization and C3-Fluorination of Polyenes
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Ha Nguyen, Michel R. Gagné, and Nikki A. Cochrane
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Halogenation ,Molecular Structure ,Chemistry ,Enantioselective synthesis ,Stereoisomerism ,Polyenes ,General Chemistry ,Alkenes ,Polyene ,Biochemistry ,Article ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Cyclization ,Organic chemistry - Abstract
(Xylyl-phanephos)Pt(2+) in combination with XeF(2) mediates the consecutive diastereoselective cation-olefin cyclization/fluorination of polyene substrates. Isolated yields were typically in the 60-69% range while enantioselectivities reached as high as 87%. The data are consistent with a stereoretentive fluorination of a P(2)Pt-alkyl cation intermediate.
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- 2013
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8. Gold(I)-Catalyzed Formation of Bicyclo[4.2.0]oct-1-enes
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Osvaldo Gutierrez, Dean J. Tantillo, Michel R. Gagné, and Ryan J. Felix
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Molecular Structure ,Bicyclic molecule ,Chemistry ,Stereochemistry ,Extramural ,Organic Chemistry ,Article ,Catalysis ,Bridged Bicyclo Compounds ,Quantum Theory ,Molecule ,Density functional theory ,Organogold Compounds ,Cope rearrangement - Abstract
Gold(I) catalysts effectively promote the Cope rearrangement of acyclic 1,5-dienes bearing a terminal cyclopropylidene. When this methodology is applied to cyclic substrates an unexpected transformation occurs, resulting in the formation of a tricyclic compound incorporating a bicyclo[4.2.0]oct-1-ene core, a portion of which is found in a number of natural products. Density functional theory calculations (M06 and M06-2X) reveal insight into the mechanism and thermodynamics of this unique transformation.
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- 2013
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9. Mechanistic Analysis of Gold(I)-Catalyzed Intramolecular Allene Hydroalkoxylation Reveals an Off-Cycle Bis(gold) Vinyl Species and Reversible C–O Bond Formation
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Ross A. Widenhoefer, Dieter Weber, Michel R. Gagné, and Timothy J. Brown
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Models, Molecular ,Molecular Structure ,Chemistry ,Allene ,organic chemicals ,General Chemistry ,Bond formation ,Photochemistry ,Biochemistry ,Article ,Catalysis ,Sorbic Acid ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Intramolecular force ,Polymer chemistry ,Molecule ,Gold ,Furans ,Hydroalkoxylation - Abstract
Mechanistic investigation of gold(I)-catalyzed intramolecular allene hydroalkoxylation established a mechanism involving rapid and reversible C–O bond formation followed by turnover-limiting protodeauration from a mono(gold) vinyl complex. This on-cycle pathway competes with catalyst aggregation and formation of an off-cycle bis(gold) vinyl complex.
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- 2012
10. Strong Electronic and Counterion Effects on Geminal Digold Formation and Reactivity as Revealed by Gold(I)–Aryl Model Complexes**
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Dieter Weber, Michel R. Gagné, Laura L. Adduci, and T. David Jones
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chemistry.chemical_classification ,Ions ,Geminal ,Molecular Structure ,Stereochemistry ,Chemistry ,Aryl ,Electrons ,General Chemistry ,General Medicine ,Medicinal chemistry ,Multiple bonds ,Aurophilicity ,Catalysis ,Article ,chemistry.chemical_compound ,Intramolecular force ,Organometallic Compounds ,Reactivity (chemistry) ,Gold ,Counterion - Abstract
Gold(I) cations have emerged as efficient and often times uniquely effective catalysts for the formation of C–X (X=C, O, N) bonds.[1] Its use as a soft π-acid for the activation of C–C multiple bonds has led to proposed intermediates that include π–gold, Au–vinyl, Au–alkyl, and Au–carbene structures.[2] In many instances a transient Au–C σ-bond is converted into a C–E bond through its reaction with an E+ electrophile.[3] Recently, we provided evidence that the intramolecular hydroarylation of allenes proceeded through two different gold–vinyl intermediates, one mononuclear (A), and one dinuclear (B), with the latter acting as the catalyst’s resting state. The digold structure was proposed to result from the reaction of LAu+ with monogold–vinyl A [Eq. (1)].[4]
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- 2012
11. Electrophilic fluorination of cationic Pt-aryl complexes
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Ha Nguyen, Ruiyao Wang, Shu Bin Zhao, Jennifer J. Becker, and Michel R. Gagné
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Halogenation ,Chemistry ,Aryl ,Electrophilic fluorination ,Molecular Conformation ,Metals and Alloys ,Cationic polymerization ,chemistry.chemical_element ,General Chemistry ,Crystallography, X-Ray ,Medicinal chemistry ,Article ,Catalysis ,Molecular conformation ,Triphos ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry.chemical_compound ,Coordination Complexes ,Cations ,Materials Chemistry ,Ceramics and Composites ,Platinum - Abstract
The electrophilic fluorination of several (triphos)Pt-aryl(+) establishes the first example of aryl-F coupling from a Pt center.
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- 2012
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12. Terminating Pt-Initiated Cation-Olefin Reactions with Simple Alkenes**
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Jennifer J. Becker, Joseph G. Sokol, Michel R. Gagné, Chandra Sekhar Korapala, and Peter S. White
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chemistry.chemical_classification ,Olefin fiber ,Chemistry ,Alkene ,Ligand ,Phosphines ,Molecular Conformation ,General Medicine ,General Chemistry ,Alkenes ,Crystallography, X-Ray ,Cyclase ,Article ,Catalysis ,Biomimetic Materials ,Coordination Complexes ,Cyclization ,Biomimetic synthesis ,Cations ,Electrophile ,Organic chemistry ,Lewis acids and bases ,Platinum - Abstract
The en masse cyclization of polyolefins into polycyclic terpenoids by cyclase enzymes (e.g. squalene to hopene), is a biosynthetic reaction of particular fascination to chemists. Noteworthy recent additions to synthetic mimics of the cyclase enzymes are asymmetric methods that include Br nsted Lewis acids (BLA), masked equivalents of Br+ and I+, organocatalysts, and electrophilic metal catalysts. With the exception of HgII reagents, few electrophilic metal catalysts cyclize polyenes with bio-like alkene terminators. The development of methods whose catalysts can initiate, cyclize, and terminate polyenes under ligand control would significantly advance the state of the art.
- Published
- 2011
13. Driving Catalyst Reoxidation in Wacker Cyclizations with Acetal-Based Metal-Hydride Abstractors
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Nikki A. Cochrane, Maurice Brookhart, and Michel R. Gagné
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Hydride ,Organic Chemistry ,Acetal ,Oxocarbenium ,Benzoquinone ,Medicinal chemistry ,Article ,Catalysis ,Inorganic Chemistry ,Metal ,chemistry.chemical_compound ,chemistry ,visual_art ,Electrophile ,visual_art.visual_art_medium ,Organic chemistry ,Physical and Theoretical Chemistry ,Stoichiometry - Abstract
In traditional Wacker processes, Pd(II) becomes reduced to Pd(0) after C-O bond formation and β-H elimination and must be reoxidized to the electrophilic Pd(II) state via a stoichiometric oxidant like benzoquinone, CuCl(2), or O(2). We report herein a Pt-catalyzed Wacker-type process that regenerates the electrophilic Pt(2+) state by H(-) abstraction from a [Pt]-H using an oxocarbenium ion generated from an acetal or ketal under acidic conditions.
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- 2011
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14. Cycloisomerization of Dienes with Carbophilic Lewis Acids: Mimicking Terpene Biosynthesis with Pt(II) Catalysts
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William D. Kerber and Michel R. Gagné
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chemistry.chemical_classification ,Allylic rearrangement ,Bicyclic molecule ,Molecular Structure ,Chemistry ,Cyclopropanation ,Alkene ,Stereochemistry ,Organic Chemistry ,Stereoisomerism ,General Medicine ,Biochemistry ,Article ,Catalysis ,Alkadienes ,Cycloisomerization ,Nucleophile ,Cyclization ,Monoterpenes ,Lewis acids and bases ,Physical and Theoretical Chemistry ,Pincer ligand ,Platinum - Abstract
The generation of carbocations from unsaturated poly-prenoids followed by C-C bond/ring-forming cation-olefin reactions, constitutes the key mechanism for the biosynthesis of most, if not all, of the terpene-derived natural products.1 Under enzyme control, the position of cation generation, the sequence and regioselectivity of the C-C bond forming steps, and the method of cation quenching, all contribute to the skeletal structure and functionality of the cyclization products. Electrophilic Pt(II) dications supported by a tridentate pincer ligand have recently been shown to catalyze several of the reactions typically associated with terpene biosynthesis (cation generation, cation-olefin, hydride shift, cyclopropanation).2 Key to the activity of these catalysts is their highly electrophilic, but also carbophilic, electronic structures, coupled with the all cis pincer ligands, which block β-hydride elimination in any Pt-alkyl intermediates. The result is a buildup of intermediates that follow pathways not otherwise competitive in catalysts capable of facile β-H elimination. In this communication, we report that a family of 1,5- and 1,6-dienes reacts under Pt-catalysis in a fashion that seemingly parallels the biosynthesis of the [3.1.0] bicyclic monoterpenes. Additionally, we disclose a trapping experiment that supports the intermediacy of organometallic carbocations. The [3.1.0] bicyclic skeleton is the key structural feature of many monoterpenes (thujane, thujene, sabinene, sabinene hydrate, sabina ketone, etc), which are found in numerous essential oils and consequently find importance in flavors and fragrances.3 Considerable effort has been devoted to the construction of this ring system, and the available methods include both intra-4 and inter-molecular5 addition of carbenoids to alkenes, intramolecular alkylation of enolates,6 a tandem Li-ene cyclization/thiophenoxide elimination,7 a Ti-mediated enyne cyclization,8 and an unusual rearrangement after reaction of silylketene acetals with bromoform-diethylzinc.9 Each of these approaches require multiple steps, and usually lead to oxygenated monoterpenes that are most amenable to the synthesis of the oxidized congeners. Based on previous cycloisomerization studies with 1, we postulated that it should also be capable of directly providing the [3.1.0]-bicyclic core10 from simple 1-6-dienes. Gratifyingly, a variety of dienes with the substitution pattern shown in Table 1 are converted to the saturated bicyclic products when exposed to 5 mol% of 1. In the case of the 1,6-diene β-citronellene (4), a highly diastereoselective rearrangement occurs and the natural product cis-thujane11 (5) is obtained in 47:1 d.r. Table 1 Cycloisomerization of dienes with 5 mol% of 1a In keeping with the high carbophilicity of these strong Lewis acids, ester-containing compounds did not poison the catalyst and the expected product was obtained (entry 3). The [4.1.0] bicyclic compound 9 could also be obtained but at a decreased rate (entry 4). A [3.1.0] bicyclic product was also obtained from the cycloisomerization of O-Bn linalool 10 (entry 5). In this case, the major product resulted from allylic isomerization to a mixture of O-Bn geraniol/nerol, however a single diastereomer of 11 was also obtained in low yield. A skeletal rearrangement has obviously taken place that will require additional study and optimization. Despite the moderate isolated yields,12 these one-step reactions represent the most efficient syntheses of the [3.1.0] bicyclic core from simple acyclic starting materials. The initiating step in the cycloisomerization reactions was presumed to involve electrophilic activation of the terminal alkene and intramolecular addition of the trisubstituted alkene to cyclogenerate intermediate carbocations that were stable to β-H elimination.2 These putative Pt(II)-alkyl carbocations had not been observed directly, but we hoped that a trapping nucleophile could intercept them for characterization. In the event, excess benzyl alcohol and Ph2NMe rapidly converted 12, the catalysts resting state,13 to a mixture of endo- and exocyclic Pt-alkyls.14,15,16 The composition of this mixture changed with time to ultimately favor the endocyclic product 13a (see inset, Scheme 1).17 Characterization of the organic fragment was achieved by reductive removal with NaBH4.15,18,19 Scheme 1 Trapping of carbocationic intermediates The data in Scheme 1 indicate that C-C bond formation was not only reversible but that both endo- and exocyclic regiochemistries were kinetically viable. When 13a was treated with one equiv of the strong Lewis acid B(C6F5)3, benzyloxide abstraction occurred concomitant with retro-cyclization to 12 (eq 1) (13a:12 ∼3:1 at early times).20 This mixture is eventually driven to 3 and (PPP)Pt(OBn)+.21 The observation that 13a returns to the catalyst resting state (12) upon -OBn abstraction, and the time-dependent ratio of 13a/13b together suggest that cyclization is rapid and reversible and that a post-cyclization step (H- shift or cyclopropanation) is turnover-limiting. (1) Since both endo- and exo- cyclization geometries are demonstrably viable, two plausible mechanisms for the cycloisomerization of 2 to 3 must be considered (Scheme 2). The two scenarios differ in the timing of ring construction, with the 6-endo pathway (b) most closely following the sequence of thujane biosynthesis.3 Distinguishing the two mechanisms may require computational help, but in both cases the cyclopropanation event is proposed to proceed via a key carbocation that is γ to the metal (from a 1,2-hydride shift of the kinetic cation). Related, stereospecific, double inversion processes are known for Sn,22 Fe,23 and Ti24 alkyls with γ-carbocations.25 Scheme 2 We have described the cycloisomerization of dienes to [3.1.0]- and [4.1.0] bicyclic compounds, including the one-step synthesis of the natural product cis-thujane. The catalyst for these reactions, a Lewis-acidic Pt(II) pincer complex, activates alkenes for cation-olefin cyclizations as evidenced by the trapping of intermediate organo-platinum carbocations.
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- 2005
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15. Steric Crowding Makes Challenging Csp3–F Reductive Eliminations Feasible.
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Shu-Bin Zhao, Jennifer J. Becker, and Michel R. Gagné
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- 2011
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16. Driving Catalyst Reoxidation in Wacker Cyclizations with Acetal-Based Metal-Hydride Abstractors.
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Nikki A. Cochrane, Maurice S. Brookhart, and Michel R. Gagné
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- 2011
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17. Investigating the Rate of Photoreductive Glucosyl Radical Generation.
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R. Stephen Andrews, Jennifer J. Becker, and Michel R. Gagné
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- 2011
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18. Dinuclear Gold−Silver Resting States May Explain Silver Effects in Gold(I)-Catalysis.
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Dieter Weber and Michel R. Gagné
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METAL catalysts , *SILVER ions , *ORGANOGOLD compounds , *SOLUTION (Chemistry) , *CHEMICAL structure , *INTERMEDIATES (Chemistry) , *ACTIVATION (Chemistry) - Abstract
The resting state of the gold(I)-catalyzed hydroarylation of 1changes in the presence of Ag+, with silver free catalysts resting at the dinuclear gold structure 5and Ag+containing solutions resting at a heteronuclear species like 6. Adventitious Ag+(typically from LAuCl activation) can therefore intercept key organogold intermediates and effect the catalysis even when it does not effect the reaction in Au free control experiments. [ABSTRACT FROM AUTHOR]
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- 2009
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19. Computational Studies on the Platinum(II)-Catalyzed Cycloisomerization of 1,6-Dienes into Bicyclopropanes: A Mechanistic Quandary Evaluated by DFT.
- Author
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Franziska Bell, Jason Holland, Jennifer C. Green, and Michel R. Gagné
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- 2009
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20. Sn-Free Ni-Catalyzed Reductive Coupling of Glycosyl Bromides with Activated Alkenes.
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Hegui Gong, R. Stephen Andrews, Joseph L. Zuccarello, Stephen J. Lee, and Michel R. Gagné
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- 2009
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21. Density Functional Study of Platinum(II)-Mediated Bicyclization of 1,6-Dienylphenols.
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Taraneh Nowroozi-Isfahani, Djamaladdin G. Musaev, Keiji Morokuma, and Michel R. Gagné
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- 2007
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22. Gold(I)-Catalyzed Cascade Cyclization of Allenyl Epoxides.
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Michael A. Tarselli, J. Lucas Zuccarello, Stephen J. Lee, and Michel R. Gagné
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- 2009
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23. Platinum(II) Enyne Cycloisomerization Catalysis: Intermediates and Resting States.
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D. Luke Nelsen and Michel R. Gagné
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ORGANOPLATINUM compounds , *ISOMERIZATION , *CATALYSIS , *ALKYNES , *INTERMEDIATES (Chemistry) , *REACTIVITY (Chemistry) , *DEUTERIUM , *RADIOLABELING - Abstract
In situ generated [(PPP)Pt][BF4]2(PPP = triphos) catalyzes the cycloisomerization of 1,6-enyne-ols by initiative π-activation of the alkyne. This generates an isolable cationic Pt-alkenyl species, which subsequently participates in turnover-limiting protonolysis with in situ generated acid. This latter reactivity contrasts cationic Pt-alkyls, which are more difficult to protonolyze. Mechanistic studies on isolated Pt-alkenyls and deuterium labeling helped to elucidate the mechanistic details. [ABSTRACT FROM AUTHOR]
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- 2009
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24. Oxidative Addition of Glycosylbromides to trans-Ir(PMe3)2(CO)Cl.
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Elizabeth M. Pelczar, Colleen Munro-Leighton, and Michel R. Gagné
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- 2009
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25. Room-Temperature -H Elimination in (P2P)Pt(OR) Cations: Convenient Synthesis of a Platinum Hydride.
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Alison N. Campbell and Michel R. Gagné
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ORGANOMETALLIC chemistry , *ORGANIC chemistry , *PHYSICAL sciences , *CHEMISTRY , *PLATINUM hydrides - Abstract
Insitu-generated (BINAP)(PMe3)PtBF42reacts with benzyl alcohol at RT to yield (BINAP)(PMe3)Pt−HBF4and benzaldehyde. This reactivity contrasts similarly ligated platinum−alkyl species, which are stable to -hydride elimination even at elevated temperatures. Protonolysis of the platinum hydride leads to a species that is readily substituted by weakly coordinating ligands (acetone, pentafluorobenzonitrile). [ABSTRACT FROM AUTHOR]
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- 2007
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26. PdII- and PtII-Mediated Polycyclization Reactions of 1,5- and 1,6-Dienes: Evidence in Support of Carbocation IntermediatesThis work was supported by the NIH (GM-60578); we also thank Dr. Cheryl Mascarenhas and Ms. Claire Catteral for related experiments. M.R.G. is a Camille Dreyfus Teacher Scholar.
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Jeong Hwan Koh and Michel R. Gagné
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- 2004
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27. Crown-ether functionalised second coordination sphere palladium catalysts by molecular imprinting.
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Florian Viton, Peter S. White, and Michel R. Gagné
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- 2003
28. Synthesis and Characterization of Chiral Diphosphine Platinum(II) VANOL and VAPOL Complexes.
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J. J. Becker, P. S. White, and M. R. Gagné:
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- 2007
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29. A novel catalytic approach to the chemical detoxification of P-ester nerve agents.
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Y. Mills, Wendy, M. Kissling, Rebecca, and R. Gagné, Michel
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- 1999
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30. Electrochemical and Spectrochemical Studies of Biological Redox Components
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KARL M. KADISH, WILLIAM R. HEINEMAN, C. WILLIAM ANDERSON, H. BRIAN HALSALL, MARILYN M. HURST, JAY M. JOHNSON, GEORGE P. KREISHMAN, BARBARA J. NORRIS, MICHAEL J. SIMONE, CHIH-HO SU, ERIC E. BANCROFT, HENRY N. BLOUNT, FRED M. HAWKRIDGE, VERNON T. TANIGUCHI, WALTHER R. ELLIS, VINCE CAMMARATA, JOHN WEBB, FRED C. ANSON, HARRY B. GRAY, RONALD L. BIRKE, JOHN R. LOMBARDI, LUIS A. SANCHEZ, J. P. GISSELBRECHT, M. GROSS, ROBERT R. GAGNÉ, ROBERT P. KREH, JOHN DODGE, EDMOND F. BOWDEN, M. J. EDDOWES, H. A. O. HILL, KATSUMI NIKI, TATSUHIKO YAGI, HIROO INOKUCHI, F. SCHELLER, G. STRNAD, A. B. P. LEVER, S. LICOCCIA, K. MAGNELL, P. C. MINOR, B. S. RAMASWAMY, ANDREAS BOTULINSKI, JOHANN WALTER BUCHLER, KIONG LAM LAY, JÜRGEN ENSLING, HANS TWILFER, JOCHEN BILLECKE, HEIKO LEUKEN, BERNHARD TONN, LAWRENCE A. BOTTOMLEY, LARRY OLSON, KAREY L. HOLLAND, JOSEPH JORDAN, CHRISTOPHER A. REED, HAROLD M. GOFF, MARTIN A. PHILLIPPI, ARDEN D. BOERSMA, ANDREW P. HANSEN, F. ANN WALKER, JUDITH A. BARRY, VIRGINIA L. BALKE, GREGORY A. McDERMOTT, MICHAEL Z. WU, PETER F. LINDE, BRIAN R. COLEM, KARL M. KADISH, WILLIAM R. HEINEMAN, C. WILLIAM ANDERSON, H. BRIAN HALSALL, MARILYN M. HURST, JAY M. JOHNSON, GEORGE P. KREISHMAN, BARBARA J. NORRIS, MICHAEL J. SIMONE, CHIH-HO SU, ERIC E. BANCROFT, HENRY N. BLOUNT, FRED M. HAWKRIDGE, VERNON T. TANIGUCHI, WALTHER R. ELLIS, VINCE CAMMARATA, JOHN WEBB, FRED C. ANSON, HARRY B. GRAY, RONALD L. BIRKE, JOHN R. LOMBARDI, LUIS A. SANCHEZ, J. P. GISSELBRECHT, M. GROSS, ROBERT R. GAGNÉ, ROBERT P. KREH, JOHN DODGE, EDMOND F. BOWDEN, M. J. EDDOWES, H. A. O. HILL, KATSUMI NIKI, TATSUHIKO YAGI, HIROO INOKUCHI, F. SCHELLER, G. STRNAD, A. B. P. LEVER, S. LICOCCIA, K. MAGNELL, P. C. MINOR, B. S. RAMASWAMY, ANDREAS BOTULINSKI, JOHANN WALTER BUCHLER, KIONG LAM LAY, JÜRGEN ENSLING, HANS TWILFER, JOCHEN BILLECKE, HEIKO LEUKEN, BERNHARD TONN, LAWRENCE A. BOTTOMLEY, LARRY OLSON, KAREY L. HOLLAND, JOSEPH JORDAN, CHRISTOPHER A. REED, HAROLD M. GOFF, MARTIN A. PHILLIPPI, ARDEN D. BOERSMA, ANDREW P. HANSEN, F. ANN WALKER, JUDITH A. BARRY, VIRGINIA L. BALKE, GREGORY A. McDERMOTT, MICHAEL Z. WU, PETER F. LINDE, and BRIAN R. COLEM
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- Bioelectrochemistry--Congresses, Oxidation-reduction reaction--Congresses, Spectrum analysis--Congresses
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- 1982
31. Integrated Genotoxicity Testing of three anti-infective drugs using the TGx-DDI transcriptomic biomarker and high-throughput CometChip ® assay in TK6 cells.
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Buick JK, Rowan-Carroll A, Gagné R, Williams A, Chen R, Li HH, Fornace AJ Jr, Chao C, Engelward BP, Frötschl R, Ellinger-Ziegelbauer H, Pettit SD, Aubrecht J, and Yauk CL
- Abstract
Genotoxicity testing relies on the detection of gene mutations and chromosome damage and has been used in the genetic safety assessment of drugs and chemicals for decades. However, the results of standard genotoxicity tests are often difficult to interpret due to lack of mode of action information. The TGx-DDI transcriptomic biomarker provides mechanistic information on the DNA damage-inducing (DDI) capability of chemicals to aid in the interpretation of positive in vitro genotoxicity data. The CometChip
® assay was developed to assess DNA strand breaks in a higher-throughput format. We paired the TGx-DDI biomarker with the CometChip® assay in TK6 cells to evaluate three model agents: nitrofurantoin (NIT), metronidazole (MTZ), and novobiocin (NOV). TGx-DDI was analyzed by two independent labs and technologies (nCounter® and TempO-Seq® ). Although these anti-infective drugs are, or have been, used in human and/or veterinary medicine, the standard genotoxicity testing battery showed significant genetic safety findings. Specifically, NIT is a mutagen and causes chromosome damage, and MTZ and NOV cause chromosome damage in conventional in vitro tests. Herein, the TGx-DDI biomarker classified NIT and MTZ as non-DDI at all concentrations tested, suggesting that NIT's mutagenic activity is bacterial specific and that the observed chromosome damage by MTZ might be a consequence of in vitro test conditions. In contrast, NOV was classified as DDI at the second highest concentration tested, which is in line with the fact that NOV is a bacterial DNA-gyrase inhibitor that also affects topoisomerase II at high concentrations. The lack of DNA damage for NIT and MTZ was confirmed by the CometChip® results, which were negative for all three drugs except at overtly cytotoxic concentrations. This case study demonstrates the utility of combining the TGx-DDI biomarker and CometChip® to resolve conflicting genotoxicity data and provides further validation to support the reproducibility of the biomarker., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Buick, Rowan-Carroll, Gagné, Williams, Chen, Li, Fornace, Chao, Engelward, Frötschl, Ellinger-Ziegelbauer, Pettit, Aubrecht and Yauk.)- Published
- 2022
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32. Brief Developmental Exposure to Fluoxetine Causes Life-Long Alteration of the Brain Transcriptome in Zebrafish.
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Nozari A, Gagné R, Lu C, Yauk C, and Trudeau VL
- Subjects
- Animals, Brain, Cholesterol metabolism, Epigenesis, Genetic, Transcriptome, Fluoxetine metabolism, Fluoxetine pharmacology, Zebrafish genetics
- Abstract
Fluoxetine (FLX) and other selective serotonin reuptake inhibitors are widely used to treat depressive disorders during pregnancy. Early-life exposure to FLX is known to disrupt the normal function of the stress axis in humans, rodents, and teleosts. We used a zebrafish line with a cortisol-inducible fluorescent transgene to study the effects of developmental daily exposure to FLX (54 µg/L) on the transcriptomic profile of brain tissues in exposed larvae and later as 6-month-old adults. High throughput RNA sequencing was conducted on brain tissues in unstressed and stressed conditions. Long-lasting effects of FLX were observed in telencephalon (Tel) and hypothalamus (Hyp) of adult zebrafish with 1927 and 5055 genes significantly (≥1.2 fold-change, false-discovery p-value < 0.05) dysregulated in unstressed condition, respectively. Similar findings were observed in Hyp with 1245 and 723 genes being significantly dysregulated in stressed adults, respectively. Differentially expressed genes converted to Homo sapiens orthologues were used for Ingenuity Pathway Analysis. The results showed alteration of pathways involved in neuroendocrine signaling, cholesterol metabolism and synaptogenesis. Enriched networks included lipid metabolism, molecular transport, and nervous system development. Analysis of putative upstream transcription regulators showed potential dysregulation of clocka and nr3c1 which control circadian rhythm, stress response, cholesterol metabolism and histone modifications. Several genes involved in epigenetic regulation were also affected by FLX, including dnmt3a, adarb1, adarb2, hdac4, hdac5, hdac8 , and atf2 . We report life-long disruptive effects of FLX on pathways associated with neuroendocrine signaling, stress response and the circadian rhythm, and all of which are implicated in the development of depressive disorders in humans. Our results raise concern for the persistent endocrine-disrupting potential of brief antidepressant exposure during embryonic development., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Nozari, Gagné, Lu, Yauk and Trudeau.)
- Published
- 2022
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33. A Modern Genotoxicity Testing Paradigm: Integration of the High-Throughput CometChip® and the TGx-DDI Transcriptomic Biomarker in Human HepaRG™ Cell Cultures.
- Author
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Buick JK, Williams A, Meier MJ, Swartz CD, Recio L, Gagné R, Ferguson SS, Engelward BP, and Yauk CL
- Subjects
- Cell Culture Techniques, Cell Line, Genetic Markers, Humans, Mutagens toxicity, Gene Expression Profiling, Transcriptome
- Abstract
Higher-throughput, mode-of-action-based assays provide a valuable approach to expedite chemical evaluation for human health risk assessment. In this study, we combined the high-throughput alkaline DNA damage-sensing CometChip
® assay with the TGx-DDI transcriptomic biomarker (DDI = DNA damage-inducing) using high-throughput TempO-Seq® , as an integrated genotoxicity testing approach. We used metabolically competent differentiated human HepaRG™ cell cultures to enable the identification of chemicals that require bioactivation to cause genotoxicity. We studied 12 chemicals (nine DDI, three non-DDI) in increasing concentrations to measure and classify chemicals based on their ability to damage DNA. The CometChip® classified 10/12 test chemicals correctly, missing a positive DDI call for aflatoxin B1 and propyl gallate. The poor detection of aflatoxin B1 adducts is consistent with the insensitivity of the standard alkaline comet assay to bulky lesions (a shortcoming that can be overcome by trapping repair intermediates). The TGx-DDI biomarker accurately classified 10/12 agents. TGx-DDI correctly identified aflatoxin B1 as DDI, demonstrating efficacy for combined used of these complementary methodologies. Zidovudine, a known DDI chemical, was misclassified as it inhibits transcription, which prevents measurable changes in gene expression. Eugenol, a non-DDI chemical known to render misleading positive results at high concentrations, was classified as DDI at the highest concentration tested. When combined, the CometChip® assay and the TGx-DDI biomarker were 100% accurate in identifying chemicals that induce DNA damage. Quantitative benchmark concentration (BMC) modeling was applied to evaluate chemical potencies for both assays. The BMCs for the CometChip® assay and the TGx-DDI biomarker were highly concordant (within 4-fold) and resulted in identical potency rankings. These results demonstrate that these two assays can be integrated for efficient identification and potency ranking of DNA damaging agents in HepaRG™ cell cultures., Competing Interests: LR and CS are employed at ILS, a contract research organization that conducts genetic toxicology testing services that include the use of HepaRG™ cell-based testing. The HepaRG™ genetic toxicology assay is being developed with support from ILS internal funding and NIEHS SBIR 4R44ES024698-02. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Her Majesty the Queen in Right of Canada.)- Published
- 2021
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34. Prolonged Low-Dose Dioxin Exposure Impairs Metabolic Adaptability to High-Fat Diet Feeding in Female but Not Male Mice.
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Matteo G, Hoyeck MP, Blair HL, Zebarth J, Rick KRC, Williams A, Gagné R, Buick JK, Yauk CL, and Bruin JE
- Subjects
- Animals, Blood Glucose drug effects, Blood Glucose metabolism, Chronic Disease, Dose-Response Relationship, Drug, Energy Metabolism drug effects, Environmental Exposure adverse effects, Environmental Pollutants pharmacology, Female, Insulin metabolism, Insulin-Secreting Cells drug effects, Insulin-Secreting Cells metabolism, Male, Mice, Mice, Inbred C57BL, Polychlorinated Dibenzodioxins pharmacology, Sex Characteristics, Time Factors, Adaptation, Physiological drug effects, Diet, High-Fat adverse effects, Dioxins pharmacology
- Abstract
Context: Human studies consistently show an association between exposure to persistent organic pollutants, including 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD, aka "dioxin"), and increased diabetes risk. We previously showed that a single high-dose TCDD exposure (20 µg/kg) decreased plasma insulin levels in male and female mice in vivo, but effects on glucose homeostasis were sex-dependent., Objective: The current study assessed whether prolonged exposure to a physiologically relevant low-dose of TCDD impacts glucose homeostasis and/or the islet phenotype in a sex-dependent manner in chow-fed or high-fat diet (HFD)-fed mice., Methods: Male and female mice were exposed to 20 ng/kg/d TCDD 2×/week for 12 weeks and simultaneously fed standard chow or a 45% HFD. Glucose homeostasis was assessed by glucose and insulin tolerance tests, and glucose-induced plasma insulin levels were measured in vivo. Histological analysis was performed on pancreas from male and female mice, and islets were isolated from females for TempO-Seq transcriptomic analysis., Results: Low-dose TCDD exposure did not lead to adverse metabolic consequences in chow-fed male or female mice, or in HFD-fed males. However, TCDD accelerated the onset of HFD-induced hyperglycemia and impaired glucose-induced plasma insulin levels in females. TCDD caused a modest increase in islet area in males but reduced the percent beta cell area within islets in females. TempO-Seq analysis suggested abnormal changes to endocrine and metabolic pathways in female TCDDHFD islets., Conclusion: Our data suggest that prolonged low-dose TCDD exposure has minimal effects on glucose homeostasis and islet morphology in chow-fed male and female mice but promotes maladaptive metabolic responses in HFD-fed females., (© The Author(s) 2021. Published by Oxford University Press on behalf of the Endocrine Society.)
- Published
- 2021
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35. High-Throughput Transcriptomic Analysis of Human Primary Hepatocyte Spheroids Exposed to Per- and Polyfluoroalkyl Substances as a Platform for Relative Potency Characterization.
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Rowan-Carroll A, Reardon A, Leingartner K, Gagné R, Williams A, Meier MJ, Kuo B, Bourdon-Lacombe J, Moffat I, Carrier R, Nong A, Lorusso L, Ferguson SS, Atlas E, and Yauk C
- Subjects
- Hepatocytes, Humans, Transcriptome, Alkanesulfonic Acids toxicity, Fluorocarbons toxicity
- Abstract
Per- and poly-fluoroalkyl substances (PFAS) are widely found in the environment because of their extensive use and persistence. Although several PFAS are well studied, most lack toxicity data to inform human health hazard and risk assessment. This study focused on 4 model PFAS: perfluorooctanoic acid (PFOA; 8 carbon), perfluorobutane sulfonate (PFBS; 4 carbon), perfluorooctane sulfonate (PFOS; 8 carbon), and perfluorodecane sulfonate (PFDS; 10 carbon). Human primary liver cell spheroids (pooled from 10 donors) were exposed to 10 concentrations of each PFAS and analyzed at 4 time points. The approach aimed to: (1) identify gene expression changes mediated by the PFAS, (2) identify similarities in biological responses, (3) compare PFAS potency through benchmark concentration analysis, and (4) derive bioactivity exposure ratios (ratio of the concentration at which biological responses occur, relative to daily human exposure). All PFAS induced transcriptional changes in cholesterol biosynthesis and lipid metabolism pathways, and predicted PPARα activation. PFOS exhibited the most transcriptional activity and had a highly similar gene expression profile to PFDS. PFBS induced the least transcriptional changes and the highest benchmark concentration (ie, was the least potent). The data indicate that these PFAS may have common molecular targets and toxicities, but that PFOS and PFDS are the most similar. The transcriptomic bioactivity exposure ratios derived here for PFOA and PFOS were comparable to those derived using rodent apical endpoints in risk assessments. These data provide a baseline level of toxicity for comparison with other known PFAS using this testing strategy., (© Her Majesty the Queen in Right of Canada 2021. Reproduced with the permission of the Minister of Health.)
- Published
- 2021
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36. Folate Intake Alters Mutation Frequency and Profiles in a Tissue- and Dose-Specific Manner in MutaMouse Male Mice.
- Author
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Diaz G S, LeBlanc DP, Gagné R, Behan NA, Wong A, Marchetti F, and MacFarlane AJ
- Subjects
- Animals, Bone Marrow drug effects, Bone Marrow metabolism, Colon drug effects, Colon metabolism, Dose-Response Relationship, Drug, Folic Acid adverse effects, Folic Acid blood, Folic Acid Deficiency blood, Folic Acid Deficiency genetics, High-Throughput Nucleotide Sequencing, Lac Operon drug effects, Male, Mice, Mice, Mutant Strains, Mice, Transgenic, Mutagenesis, Organ Specificity, Folic Acid administration & dosage, Mutation Rate
- Abstract
Background: While cancer is common, its incidence varies widely by tissue. These differences are attributable to variable risk factors, such as environmental exposure, genetic inheritance, and lifetime number of stem cell divisions in a tissue. Folate deficiency is generally associated with increased risk for colorectal cancer (CRC) and acute lymphocytic leukemia (ALL). Conversely, high folic acid (FA) intake has also been associated with higher CRC risk., Objective: Our objective was to compare the effect of folate intake on mutant frequency (MF) and types of mutations in the colon and bone marrow of mice., Methods: Five-week-old MutaMouse male mice were fed a deficient (0 mg FA/kg), control (2 mg FA/kg), or supplemented (8 mg FA/kg) diet for 20 wk. Tissue MF was assessed using the lacZ mutant assay and comparisons made by 2-factor ANOVA. LacZ mutant plaques were sequenced using next-generation sequencing, and diet-specific mutation profiles within each tissue were compared by Fisher's exact test., Results: In the colon, the MF was 1.5-fold and 1.3-fold higher in mice fed the supplemented diet compared with mice fed the control (P = 0.001) and deficient (P = 0.008) diets, respectively. This contrasted with the bone marrow MF in the same mice where the MF was 1.7-fold and 1.6-fold higher in mice fed the deficient diet compared with mice fed the control (P = 0.02) and supplemented (P = 0.03) diets, respectively. Mutation profiles and signatures (mutation context) were tissue-specific., Conclusions: Our data indicate that dietary folate intake affects mutagenesis in a tissue- and dose-specific manner in mice. Mutation profiles were generally tissue- but not dose-specific, suggesting that altered cellular folate status appears to interact with endogenous mutagenic mechanisms in each tissue to create a permissive context in which specific mutation types accumulate. These data illuminate potential mechanisms underpinning differences in observed associations between folate intake/status and cancer., (© Crown copyright 2021.)
- Published
- 2021
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37. Transcriptomic pathway and benchmark dose analysis of Bisphenol A, Bisphenol S, Bisphenol F, and 3,3',5,5'-Tetrabromobisphenol A in H9 human embryonic stem cells.
- Author
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Peshdary V, Hobbs CA, Maynor T, Shepard K, Gagné R, Williams A, Kuo B, Chepelev N, Recio L, Yauk C, and Atlas E
- Subjects
- Cell Line, Dose-Response Relationship, Drug, Humans, RNA-Seq, Risk Assessment, Benzhydryl Compounds toxicity, Endocrine Disruptors toxicity, Human Embryonic Stem Cells drug effects, Phenols toxicity, Polybrominated Biphenyls toxicity, Sulfones toxicity, Transcriptome drug effects
- Abstract
Bisphenol A (BPA) is a chemical used in the manufacturing of plastics to which human exposure is ubiquitous. Numerous studies have linked BPA exposure to many adverse health outcomes prompting the replacement of BPA with various analogues including bisphenol-F (BPF) and bisphenol S (BPS). Other bisphenols are used in various consumer applications, such as 3,3',5,5'-Tetrabromobisphenol A (TBBPA), which is used as a flame retardant. Few studies to date have examined the effects of BPA and its analogues in stem cells to explore potential developmental impacts. Here we used transcriptomics to investigate similarities and differences of BPA and three of its analogues in the estrogen receptor negative, human embryonic stem cell line H9 (WA09). H9 cells were exposed to increasing concentrations of the bisphenols and analyzed using RNA-sequencing. Our data indicate that BPA, BPF, and BPS have similar potencies in inducing transcriptional changes and perturb many of the same pathways. TBBPA, the least structurally similar bisphenol of the group, exhibited much lower potency. All bisphenols robustly impacted gene expression in these cells, albeit at concentrations well above those observed in estrogen-positive cells. Overall, we provide a foundational data set against which to explore the transcriptional similarities of other bisphenols in embryonic stem cells, which may be used to assess the suitability of chemical grouping for read-across and for preliminary potency evaluation., (Crown Copyright © 2021. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2021
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38. Depot-Specific Analysis of Human Adipose Cells and Their Responses to Bisphenol S.
- Author
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Peshdary V, Styles G, Gagné R, Yauk CL, Sorisky A, and Atlas E
- Subjects
- Adipocytes cytology, Adipocytes metabolism, Adipogenesis drug effects, Adult, Aged, Animals, Cells, Cultured, Female, Humans, Intra-Abdominal Fat cytology, Intra-Abdominal Fat drug effects, Intra-Abdominal Fat metabolism, Male, Mice, Middle Aged, PPAR gamma genetics, PPAR gamma metabolism, Stem Cells cytology, Stem Cells drug effects, Stem Cells metabolism, Subcutaneous Fat cytology, Subcutaneous Fat drug effects, Subcutaneous Fat metabolism, Adipocytes drug effects, Endocrine Disruptors toxicity, Phenols toxicity, Sulfones toxicity
- Abstract
Exposure to endocrine-disrupting chemicals (EDCs) is associated with adverse health outcomes including obesity and diabetes. Obesity, and more specifically visceral obesity, is correlated with metabolic disease. The adipose tissue is an endocrine organ and a potential target for many environmental pollutants including bisphenols. The subcutaneous (Sc) and the omental (Om, visceral) depots are composed of mature adipocytes and residing progenitors, which may be different between the depots and may be EDCs targets. Bisphenol A (BPA) is a suspected metabolic disruptor, and is being replaced with structurally similar compounds such as bisphenol S (BPS). Like BPA, BPS induces adipogenesis in murine and primary human Sc preadipocytes. However, the effect of BPS on Om preadipocytes is not known. In this study, we show that human primary progenitors from Om depots have a distinct transcriptomic signature as compared to progenitors derived from donor-matched Sc depots. Furthermore, we show that BPS increases adipogenesis both of Om and Sc preadipocytes and can mimic the action of glucocorticoids or peroxisome proliferator-activated receptor γ (PPARγ) agonists. We also show that BPS treatment, at 0.1 µM and 25 µM, modifies the adipokine profiles both of Om- and Sc-derived adipocytes in a depot-specific manner. Taken together our data show distinct gene expression profiles in the Om vs Sc progenitors and similar responses to the BPA analogue, BPS., (© Her Majesty the Queen in Right of Canada, as represented by the Minister of Health, 2020.)
- Published
- 2020
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39. Flow cytometric micronucleus assay and TGx-DDI transcriptomic biomarker analysis of ten genotoxic and non-genotoxic chemicals in human HepaRG™ cells.
- Author
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Buick JK, Williams A, Gagné R, Swartz CD, Recio L, Ferguson SS, and Yauk CL
- Abstract
Background: Modern testing paradigms seek to apply human-relevant cell culture models and integrate data from multiple test systems to accurately inform potential hazards and modes of action for chemical toxicology. In genetic toxicology, the use of metabolically competent human hepatocyte cell culture models provides clear advantages over other more commonly used cell lines that require the use of external metabolic activation systems, such as rat liver S9. HepaRG™ cells are metabolically competent cells that express Phase I and II metabolic enzymes and differentiate into mature hepatocyte-like cells, making them ideal for toxicity testing. We assessed the performance of the flow cytometry in vitro micronucleus (MN) test and the TGx-DDI transcriptomic biomarker to detect DNA damage-inducing (DDI) chemicals in human HepaRG™ cells after a 3-day repeat exposure. The biomarker, developed for use in human TK6 cells, is a panel of 64 genes that accurately classifies chemicals as DDI or non-DDI. Herein, the TGx-DDI biomarker was analyzed by Ion AmpliSeq whole transcriptome sequencing to assess its classification accuracy using this more modern gene expression technology as a secondary objective., Methods: HepaRG™ cells were exposed to increasing concentrations of 10 test chemicals (six genotoxic chemicals, including one aneugen, and four non-genotoxic chemicals). Cytotoxicity and genotoxicity were measured using the In Vitro MicroFlow® kit, which was run in parallel with the TGx-DDI biomarker., Results: A concentration-related decrease in relative survival and a concomitant increase in MN frequency were observed for genotoxic chemicals in HepaRG™ cells. All five DDI and five non-DDI agents were correctly classified (as genotoxic/non-genotoxic and DDI/non-DDI) by pairing the test methods. The aneugenic agent (colchicine) yielded the expected positive result in the MN test and negative (non-DDI) result by TGx-DDI., Conclusions: This next generation genotoxicity testing strategy is aligned with the paradigm shift occurring in the field of genetic toxicology. It provides mechanistic insight in a human-relevant cell-model, paired with measurement of a conventional endpoint, to inform the potential for adverse health effects. This work provides support for combining these assays in an integrated test strategy for accurate, higher throughput genetic toxicology testing in this metabolically competent human progenitor cell line., Competing Interests: Competing interestsStephen Ferguson disclaims that the statements and opinions expressed in the text are not those of the US government. The authors declare that they have no competing interests., (© The Author(s) 2020.)
- Published
- 2020
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40. Hepatic transcriptional dose-response analysis of male and female Fischer rats exposed to hexabromocyclododecane.
- Author
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Farmahin R, Gannon AM, Gagné R, Rowan-Carroll A, Kuo B, Williams A, Curran I, and Yauk CL
- Subjects
- Animals, Dose-Response Relationship, Drug, Female, Male, RNA, Messenger genetics, Rats, Inbred F344, Sequence Analysis, RNA, Toxicogenetics methods, Flame Retardants toxicity, Hydrocarbons, Brominated toxicity, Liver drug effects, Transcription, Genetic drug effects, Transcriptome drug effects
- Abstract
Hexabromocyclododecane (HBCD) is a brominated flame retardant found in the environment and human tissues. The toxicological effects of HBCD exposure are not clearly understood. We employed whole-genome RNA-sequencing on liver samples from male and female Fischer rats exposed to 0, 250, 1250, and 5000 mg technical mixture of HBCD/kg diet for 28 days to gain further insight into HBCD toxicity. HBCD altered 428 and 250 gene transcripts in males and females, respectively, which were involved in metabolism of xenobiotics, oxidative stress, immune response, metabolism of glucose and lipids, circadian regulation, cell cycle, fibrotic activity, and hormonal balance. Signature analysis supported that HBCD operates through the constitutive androstane and pregnane X receptors. The median transcriptomic benchmark dose (BMD) for the lowest statistically significant pathway was within 1.5-fold of the BMD for increased liver weight, while the BMD for the lowest pathway with at least three modeled genes (minimum 5% of pathway) was similar to the lowest apical endpoint BMD. The results show how transcriptional analyses can inform mechanisms underlying chemical toxicity and the doses at which potentially adverse effects occur. This experiment is part of a larger study exploring the use of toxicogenomics and high-throughput screening for human health risk assessment., (Crown Copyright © 2019. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2019
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41. Paternal exposure to benzo(a)pyrene induces genome-wide mutations in mouse offspring.
- Author
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Beal MA, Meier MJ, Williams A, Rowan-Carroll A, Gagné R, Lindsay SJ, Fitzgerald T, Hurles ME, Marchetti F, and Yauk CL
- Subjects
- Animals, DNA Copy Number Variations, Environmental Exposure, Female, Male, Mice, Inbred C57BL, Mitosis drug effects, Mitosis genetics, Spermatogenesis drug effects, Spermatogenesis genetics, Benzo(a)pyrene adverse effects, Environmental Pollutants adverse effects, Mutagens adverse effects, Mutation, Paternal Exposure, Spermatozoa drug effects
- Abstract
Understanding the effects of environmental exposures on germline mutation rates has been a decades-long pursuit in genetics. We used next-generation sequencing and comparative genomic hybridization arrays to investigate genome-wide mutations in the offspring of male mice exposed to benzo(a)pyrene (BaP), a common environmental pollutant. We demonstrate that offspring developing from sperm exposed during the mitotic or post-mitotic phases of spermatogenesis have significantly more de novo single nucleotide variants (1.8-fold; P < 0.01) than controls. Both phases of spermatogenesis are susceptible to the induction of heritable mutations, although mutations arising from post-fertilization events are more common after post-mitotic exposure. In addition, the mutation spectra in sperm and offspring of BaP-exposed males are consistent. Finally, we report a significant increase in transmitted copy number duplications ( P = 0.001) in BaP-exposed sires. Our study demonstrates that germ cell mutagen exposures induce genome-wide mutations in the offspring that may be associated with adverse health outcomes., Competing Interests: Competing interestsThe authors declare no competing interests.
- Published
- 2019
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42. Prediction of effective properties and sound absorption of random close packings of monodisperse spherical particles: Multiscale approach.
- Author
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Viet Dung V, Panneton R, and Gagné R
- Abstract
The transport and sound absorption properties of random close packings of monodisperse spherical particles are explored following a multiscale approach. First, the discrete element method is used to simulate the free fall of the monodisperse particles in a bounded domain to create virtual samples that are representative of real samples. Different particle diameters ranging from 1 to 16 mm are studied. From the virtual samples, representative volume elements (RVEs) are defined. Local partial differential equations governing the transport properties are numerically solved on the RVEs. From the discretized RVEs and the numerical solutions, eight transport properties (porosity, tortuosity, and viscous and thermal static tortuosities, permeabilities, and characteristic lengths) are derived. Micro-macro relationships between these properties and the particle diameter are developed. They are validated against experimental measurements of the open porosity and sound absorption coefficients. The relationships are used to analyze the salient sound absorption features of such media, notably the resonant sound absorption behavior. Expressions allowing identification of the optimal particle diameter for a given thickness, or conversely, the optimal thickness for a given particle diameter, for achieving 100% absorption at the first resonant absorption are derived.
- Published
- 2019
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43. The use of in vitro transcriptional data to identify thresholds of effects in a human lens epithelial cell-line exposed to ionizing radiation.
- Author
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Chauhan V, Rowan-Carroll A, Gagné R, Kuo B, Williams A, and Yauk CL
- Subjects
- Benchmarking, Cells, Cultured, Cluster Analysis, Epithelial Cells radiation effects, Humans, Radiation Dosage, Radiation, Ionizing, Transcription, Genetic, Lens, Crystalline radiation effects
- Abstract
Purpose: The International Commission on Radiological Protection (ICRP) recently recommended reducing the occupational equivalent dose limit for the lens of the eye. Based primarily on a review of epidemiological data, the absorbed dose threshold is now considered to be 0.5 Gy independent of dose-rate and severity of opacification, reduced from the previous threshold of 2 Gy. However, direct mechanistic evidence to support an understanding of the underlying molecular mechanisms of damage is still lacking. To this end, we explored the effects of a broad dose-range of ionizing radiation exposure on gene expression changes in a human lens epithelial (HLE) cell-line in order to better understand the shape of the dose-response relationship and identify transcriptional thresholds of effects., Methods: HLE cells were exposed to doses of 0, 0.01, 0.05, 0.25, 0.5, 2, and 5 Gy of X-ray radiation at two dose rates (1.62 cGy/min and 38.2 cGy/min). Cell culture lysates were collected 20 h post-exposure and analyzed using whole-genome RNA-sequencing. Pathways and dose-thresholds of biological effects were identified using benchmark dose (BMD) modeling., Results: Transcriptional responses were minimal at doses less than 2 Gy. At higher doses, there were a significant number of differentially expressed genes (DEGs) (p≤.05, fold change≥|1.5|) at both dose rates, with 1308 DEGs for the low dose rate (LDR) and 840 DEGs for the high dose rate (HDR) exposure. Dose-response modeling showed that a number of genes exhibited non-linear bi-phasic responses, which was verified by digital droplet PCR. BMD analysis showed the majority of the pathways responded at BMD median values in the dose range of 1.5-2.5 Gy, with the lowest BMD median value being 0.6 Gy for the HDR exposure. The minimum pathway BMD median value for LDR exposure, however, was 2.5 Gy. Although the LDR and HDR exposures shared pathways involved in extracellular matrix reorganization and collagen production with BMD median value of 2.9 Gy, HDR exposures were more effective in activating pathways associated with DNA damage response, apoptosis, and cell cycling relative to LDR exposure., Conclusions: Overall, the results suggest that radiation induces complex non-linear transcriptional dose-response relationships that are dose-rate dependent. Pathways shared between the two dose rates may be important contributors to radiation-induced cataractogenesis. BMD analysis suggests that the majority of pathways are activated above 0.6 Gy, which supports current ICRP identified dose thresholds for deterministic effects to the lens of the eye of 0.5 Gy.
- Published
- 2019
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44. Transgenerational hypocortisolism and behavioral disruption are induced by the antidepressant fluoxetine in male zebrafish Danio rerio .
- Author
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Vera-Chang MN, St-Jacques AD, Gagné R, Martyniuk CJ, Yauk CL, Moon TW, and Trudeau VL
- Subjects
- Animals, Antidepressive Agents pharmacology, Behavior, Animal drug effects, Depressive Disorder, Family Characteristics, Female, Fluoxetine pharmacology, Male, Maternal Exposure adverse effects, Maternal-Fetal Exchange drug effects, Pregnancy, Selective Serotonin Reuptake Inhibitors pharmacology, Stress, Psychological, Zebrafish metabolism, Zebrafish physiology, Zebrafish Proteins metabolism, Fluoxetine adverse effects, Hydrocortisone metabolism
- Abstract
The global prevalence of depression is high during childbearing. Due to the associated risks to the mother and baby, the selective serotonin reuptake inhibitor fluoxetine (FLX) is often the first line of treatment. Given that FLX readily crosses the placenta, a fetus may be susceptible to the disruptive effects of FLX during this highly plastic stage of development. Here, we demonstrate that a 6-day FLX exposure to a fetus-relevant concentration at a critical developmental stage suppresses cortisol levels in the adult zebrafish (F
0 ). This effect persists for three consecutive generations in the unexposed descendants (F1 to F3 ) without diminution and is more pronounced in males. We also show that the in vivo cortisol response of the interrenal (fish "adrenal") to an i.p. injection of adrenocorticotropic hormone was also reduced in the males from the F0 and F3 FLX lineages. Transcriptomic profiling of the whole kidney containing the interrenal cells revealed that early FLX exposure significantly modified numerous pathways closely associated with cortisol synthesis in the male adults from the F0 and F3 generations. We also show that the low cortisol levels are linked to significantly reduced exploratory behaviors in adult males from the F0 to F2 FLX lineages. This may be a cause for concern given the high prescription rates of FLX to pregnant women and the potential long-term negative impacts on humans exposed to these therapeutic drugs., Competing Interests: The authors declare no conflict of interest.- Published
- 2018
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45. Transcriptional profiling of male CD-1 mouse lungs and Harderian glands supports the involvement of calcium signaling in acrylamide-induced tumors.
- Author
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Chepelev NL, Gagné R, Maynor T, Kuo B, Hobbs CA, Recio L, and Yauk CL
- Subjects
- Animals, Calcium Signaling genetics, Gene Expression Profiling, Harderian Gland metabolism, Lung metabolism, Male, Mice, Neoplasms metabolism, Sequence Analysis, RNA, Transcriptome, Acrylamide toxicity, Calcium Signaling drug effects, Harderian Gland drug effects, Lung drug effects, Neoplasms chemically induced, Neoplasms genetics
- Abstract
Acrylamide (AA) exposure causes increased incidence of forestomach, lung, and Harderian gland tumors in male mice. One hypothesized mode of action (MOA) for AA-carcinogenicity includes genotoxicity/mutagenicity as a key event, possibly resulting from AA metabolism to the direct genotoxic metabolite glycidamide. Alternatively, altered calcium signaling (CS) has been proposed as a central key event in the MOA. To examine the plausibility of these proposed MOAs, RNA-sequencing was performed on tumor target tissues: Harderian glands (the most sensitive tumor target tissue in the rodent 2-year cancer bioassay) and lungs of AA-exposed male CD-1 mice. Animals were exposed to 0.0, 1.5, 3.0, 6.0, 12.0, or 24.0 mg AA/kg bw-day in drinking water for 5, 15, or 31 days. We observed a pronounced effect on genes involved in CS and cytoskeletal processes in both tissues, but no evidence supporting a genotoxic MOA. Benchmark dose modeling suggests transcriptional points of departure (PODs) of 0.54 and 2.21 mg/kg bw-day for the Harderian glands and lungs, respectively. These are concordant with PODs of 0.17 and 1.27 mg/kg bw-day derived from the cancer bioassay data for these tissues in male mice, respectively. Overall, this study supports the involvement of CS in AA-induced mouse carcinogenicity, which is consistent with a recently proposed CS-based MOA in rat thyroid, and with other published reports of aberrant CS in malignant tumors in rodents and humans., (Crown Copyright © 2018. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
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46. Adipogenic Effects and Gene Expression Profiling of Firemaster® 550 Components in Human Primary Preadipocytes.
- Author
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Tung EWY, Peshdary V, Gagné R, Rowan-Carroll A, Yauk CL, Boudreau A, and Atlas E
- Subjects
- 3T3-L1 Cells, Adipogenesis, Animals, Gene Expression Profiling, Humans, Mice, Adipocytes drug effects, Flame Retardants toxicity, Toxicity Tests
- Abstract
Background: Exposure to flame retardants has been associated with negative health outcomes including metabolic effects. As polybrominated diphenyl ether flame retardants were pulled from commerce, human exposure to new flame retardants such as Firemaster® 550 (FM550) has increased. Although previous studies in murine systems have shown that FM550 and its main components increase adipogenesis, the effects of FM550 in human models have not been elucidated., Objectives: The objectives of this study were to determine if FM550 and its components are active in human preadipocytes, and to further investigate their mode of action., Methods: Human primary preadipocytes were differentiated in the presence of FM550 and its components. Differentiation was assessed by lipid accumulation and expression of peroxisome proliferator-activated receptor γ (PPARG), fatty acid binding protein (FABP) 4 and lipoprotein lipase (LPL). mRNA was collected for Poly (A) RNA sequencing and was used to identify differentially expressed genes (DEGs). Functional analysis of DEGs was undertaken in Ingenuity Pathway Analysis., Results: FM550 triphenyl phosphate (TPP) and isopropylated triphenyl phosphates (IPTP), increased adipogenesis in human primary preadipocytes as assessed by lipid accumulation and mRNA expression of regulators of adipogenesis such as PPARγ, CCAAT enhancer binding protein (C/EBP) α and sterol regulatory element binding protein (SREBP) 1 as well as the adipogenic markers FABP4 LPL and perilipin. Poly (A) RNA sequencing analysis revealed potential modes of action including liver X receptor/retinoid X receptor (LXR/RXR) activation, thyroid receptor (TR)/RXR, protein kinase A, and nuclear receptor subfamily 1 group H members activation., Conclusions: We found that FM550, and two of its components, induced adipogenesis in human primary preadipocytes. Further, using global gene expression analysis we showed that both TPP and IPTP likely exert their effects through PPARG to induce adipogenesis. In addition, IPTP perturbed signaling pathways that were not affected by TPP. https://doi.org/10.1289/EHP1318.
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- 2017
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47. Transcriptional profiling of male F344 rats suggests the involvement of calcium signaling in the mode of action of acrylamide-induced thyroid cancer.
- Author
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Chepelev NL, Gagné R, Maynor T, Kuo B, Hobbs CA, Recio L, and Yauk CL
- Subjects
- Animals, Humans, Liver drug effects, Liver metabolism, Male, Rats, Rats, Inbred F344, Thyroid Gland drug effects, Thyroid Gland metabolism, Thyroid Hormones blood, Thyroid Neoplasms blood, Thyroid Neoplasms metabolism, Transcription, Genetic, Acrylamide toxicity, Calcium Signaling, Thyroid Neoplasms etiology, Thyroid Neoplasms genetics
- Abstract
Acrylamide (AA) exposure in 2-year cancer bioassays leads to thyroid, but not liver, adenomas and adenocarcinomas in rats. Hypothesized modes of action (MOAs) include genotoxicity/mutagenicity, or thyroid hormone dysregulation. To examine the plausibility of these two or any alternative MOAs, RNA-sequencing was performed on the thyroids and livers of AA-exposed rats, in parallel with measurement of genotoxicity (blood micronucleus and Pig-a mutant frequency) and serum thyroid hormone levels, following the exposure of male Fischer 344/DuCrl rats to 0.0, 0.5, 1.5, 3.0, 6.0, or 12.0 mg AA/kg bw-day in drinking water for 5, 15, or 31 days. Differentially expressed genes in both tissues provided marginal support for hormonal and genotoxic MOAs, which was consistent with negative/equivocal genotoxicity assay and marginal changes in thyroid hormone levels. Instead, there was a pronounced effect on calcium signaling/cytoskeletal genes in the thyroid. Benchmark dose modeling of RNA-sequencing data for the calcium signaling pathway suggests a point of departure (POD) of 0.68 mg/kg bw-day, which is consistent with a POD of 0.82 mg/kg bw-day derived from the thyroid 2-year cancer bioassay data. Overall, this study suggests a novel MOA for AA-induced thyroid carcinogenicity in male rats centered around perturbation of calcium signaling., (Crown Copyright © 2017. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2017
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48. Genetic Toxicity of Complex Mixtures of Polycyclic Aromatic Hydrocarbons: Evaluating Dose-Additivity in a Transgenic Mouse Model.
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Long AS, Lemieux CL, Gagné R, Lambert IB, and White PA
- Subjects
- Animals, Carcinogens, Complex Mixtures, Humans, Mice, Risk Assessment, Environmental Pollutants toxicity, Mice, Transgenic, Mutagens toxicity, Polycyclic Aromatic Hydrocarbons toxicity
- Abstract
This study evaluates the risk assessment approach currently employed for polycyclic aromatic hydrocarbon (PAH)-contaminated media, wherein carcinogenic hazards are evaluated using a dose-addition model that employs potency equivalency factors (PEFs) for targeted carcinogenic PAHs. Here, MutaMouse mice were subchronically exposed to PAH mixtures (p.o.), and mutagenic potency (MP) values were determined for five tissues. Predicted dose-additive mixture MPs were generated by summing the products of the concentrations and MPs of the individual targeted PAHs; values were compared to the experimental MPs of the mixtures to evaluate dose-additivity. Additionally, the PEF-determined BaP-equivalent concentrations were compared to those determined using a bioassay-derived method (BDM) (i.e., an additivity-independent approach). In bone marrow, mixture mutagenicity was less than dose-additive and the PEF-method provided higher estimates of BaP-equivalents than the BDM. Conversely, mixture mutagenicity in site-of-contact tissues (e.g., small intestine) was generally more than dose-additive and the PEF-method provided lower estimates of BaP-equivalents than the BDM. Overall, this study demonstrates that dose-additive predictions of mixture mutagenic potency based on the concentrations and potencies of a small number of targeted PAHs results in values that are surprisingly close to those determined experimentally, providing support for the dose-additive assumption employed for human health risk assessment of PAH mixtures.
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- 2017
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49. Bisphenol A and Bisphenol S Induce Distinct Transcriptional Profiles in Differentiating Human Primary Preadipocytes.
- Author
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Boucher JG, Gagné R, Rowan-Carroll A, Boudreau A, Yauk CL, and Atlas E
- Abstract
Bisphenol S (BPS) is increasingly used as a replacement plasticizer for bisphenol A (BPA) but its effects on human health have not been thoroughly examined. Recent evidence indicates that both BPA and BPS induce adipogenesis, although the mechanisms leading to this effect are unclear. In an effort to identify common and distinct mechanisms of action in inducing adipogenesis, transcriptional profiles of differentiating human preadipocytes exposed to BPA or BPS were compared. Human subcutaneous primary preadipocytes were differentiated in the presence of either 25 μM BPA or BPS for 2 and 4 days. Poly-A RNA-sequencing was used to identify differentially expressed genes (DEGs). Functional analysis of DEGs was undertaken in Ingenuity Pathway Analysis. BPA-treatment resulted in 472 and 176 DEGs on days 2 and 4, respectively, affecting pathways such as liver X receptor (LXR)/retinoid X receptor (RXR) activation, hepatic fibrosis and cholestasis. BPS-treatment resulted in 195 and 51 DEGs on days 2 and 4, respectively, revealing enrichment of genes associated with adipogenesis and lipid metabolism including the adipogenesis pathway and cholesterol biosynthesis. Interestingly, the transcription repressor N-CoR was identified as a negative upstream regulator in both BPA- and BPS-treated cells. This study presents the first comparison of BPA- and BPS-induced transcriptional profiles in human differentiating preadipocytes. While we previously showed that BPA and BPS both induce adipogenesis, the results from this study show that BPS affects adipose specific transcriptional changes earlier than BPA, and alters the expression of genes specifically related to adipogenesis and lipid metabolism. The findings provide insight into potential BPS and BPA-mediated mechanisms of action in inducing adipogenesis in human primary preadipocytes., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2016
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50. Transcriptional profiling of the mouse hippocampus supports an NMDAR-mediated neurotoxic mode of action for benzo[a]pyrene.
- Author
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Chepelev NL, Long AS, Bowers WJ, Gagné R, Williams A, Kuo B, Phillips DH, Arlt VM, White PA, and Yauk CL
- Subjects
- Animals, Benzo(a)pyrene metabolism, DNA Adducts metabolism, Dose-Response Relationship, Drug, Gene Expression Profiling, Hippocampus metabolism, Male, Mice, Inbred Strains, Real-Time Polymerase Chain Reaction, Receptors, N-Methyl-D-Aspartate metabolism, Benzo(a)pyrene toxicity, DNA Damage, Hippocampus drug effects, Neurotoxicity Syndromes genetics, Receptors, N-Methyl-D-Aspartate genetics, Transcriptome
- Abstract
Benzo[a]pyrene (BaP) is a genotoxic carcinogen and a neurotoxicant. The neurotoxicity of BaP is proposed to arise from either genotoxicity leading to neuronal cell death, or perturbed expression of N-methyl-d-aspartate receptor (NMDAR) subunits. To explore these hypotheses, we profiled hippocampal gene expression of adult male Muta(™) Mouse administered 0, 1, 35, or 70 mg BaP/kg bw per day by oral gavage for 3 days. Transcriptional profiles were examined by RNA-sequencing (RNA-seq), DNA microarrays, and real-time quantitative reverse transcription polymerase chain reaction (RT-PCR). BaP-DNA adducts in the cerebellum were quantified by (32) P-post-labeling to measure genotoxicity. RNA-seq revealed altered expression of 0, 260, and 219 genes (P-value < 0.05, fold-change ≥ ± 1.5) following exposure to the low, medium, and high doses, respectively; 54 genes were confirmed by microarrays. Microarray and RT-PCR analysis showed increased expression of NMDAR subunits Grina and Grin2a. In contrast, no effects on DNA-damage response genes were observed despite comparable BaP-DNA adduct levels in the cerebellum and in the lungs and livers of mice at similar BaP doses in previous studies. The results suggest that DNA-damage response does not play a major role in BaP-induced adult neurotoxicity. Meta-analysis revealed that BaP-induced transcriptional profiles are highly correlated with those from the hippocampus of transgenic mice exhibiting similar neurotoxicity outcomes to BaP-exposed mice and rats (i.e., defects in learning and memory). Overall, we suggest that BaP-induced neurotoxicity is more likely to be a consequence of NMDAR perturbation than genotoxicity, and identify other important genes potentially mediating this adverse outcome. Environ. Mol. Mutagen. 57:350-363, 2016. © 2016 Her Majesty the Queen in Right of Canada. Environmental and Molecular Mutagenesis © 2016 Environmental Mutagen Society., (© 2016 Reproduced with the permission of the Government of Canada.)
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- 2016
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