30 results on '"Quefeng Li"'
Search Results
2. Wearable Devices, Health Care Use, and Psychological Well‐Being in Patients With Atrial Fibrillation
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Lindsey Rosman, Rachel Lampert, Songcheng Zhuo, Quefeng Li, Niraj Varma, Matthew Burg, Allison E. Gaffey, Tiffany Armbruster, and Anil Gehi
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atrial fibrillation ,digital health ,wearables ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Wearables are increasingly used by patients with atrial fibrillation (AF) for symptom monitoring and health management, but their impact on patient health care use and psychological well‐being is not well understood. Methods and Results In this retrospective, propensity‐matched study of patients with AF, survey and electronic health record data were merged to compare AF‐specific health care use (outpatient/inpatient visits, rhythm‐related testing, and procedures) and informal health care use (telephone calls and patient portal messages) over a 9‐month period between wearable users and nonusers. We also examined the effects of wearable cardiac monitoring features (eg, heart rate alerts, irregular rhythm notification, and ECG) on patient behavior and well‐being. Of 172 patients with AF in this analysis (age, 72.6±9.0 years; 42% women), 83 used a wearable. Compared with nonusers, wearable users reported higher rates of symptom monitoring and preoccupation (P=0.03) and more AF treatment concerns (P=0.02). Moreover, 20% of wearable users experienced anxiety and always contacted their doctors in response to irregular rhythm notifications. After matching, AF‐specific health care use was significantly greater among wearable users compared with nonusers (P=0.04), including significantly higher rates of ECGs, echocardiograms/transesophageal echocardiogram, and ablation. Wearable users were also significantly more likely to use informal health care resources compared with nonusers (P=0.05). Conclusions Wearables were associated with higher rates of symptom monitoring and preoccupation, AF treatment concerns, AF‐specific health care use, and use of informal health care resources. Prospective, randomized studies are needed to understand the net effects of wearables and their alerts on patients, providers, and the health care system.
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- 2024
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3. Use of mechanical circulatory support and survival for heart and heart-kidney transplant recipients in the new allocation system
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Aurelie Merlo, MD, Hannah F. Bensimhon, MD, Patricia P. Chang, MD, MHS, Zhentao Yu, MS, Randall Watkins, BSEE, SSBB, Quefeng Li, PhD, and Mirnela Byku, MD, PhD
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allocation ,heart-kidney transplant ,LVAD ,MCS ,temporary MCS ,Surgery ,RD1-811 ,Specialties of internal medicine ,RC581-951 - Abstract
Background: The 2018 United Network for Organ Sharing organ allocation change aimed to distribute donor hearts to the sickest patients on the waitlist. Whether this change differentially affected outcomes in heart-only vs heart-kidney transplant recipients is unknown. Methods: This study used the Scientific Registry of Transplant Recipients to compare outcomes, including survival, of heart-only and heart-kidney transplant recipients from 2015 to 2021, from the old vs new allocation system, including use of mechanical circulatory support (MCS), prior to transplant. Results: During the study period, 16,696 patients underwent heart transplant alone (9,320 in the old and 7,376 in the new system) and 1,156 patients underwent heart-kidney transplant (529 in the old and 627 in the new system). For both heart and heart-kidney transplant populations, there was a 3- to 5-fold increase in the use of temporary MCS. Heart-only recipients had worse survival when temporary MCS was used in the old allocation system. Heart-only recipients with durable MCS had worse survival both in the old and the new allocation system. There was no difference in survival in heart-kidney recipients in the old vs new allocation system, regardless of MCS use. Conclusions: The new heart allocation system was associated with increased use of temporary MCS in both heart and heart-kidney recipients. However, this change only differentially affected survival in heart-only recipients with improved survival if on temporary MCS, but worse survival if on durable MCS. Unlike prior studies, heart-kidney recipients did not have different outcomes after the heart allocation change, which may reflect outcomes in more current times.
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- 2024
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4. Lung Ultrasound, Bioimpedance Spectroscopy, and Physical Examination for Volume Assessment in Hospitalized Hemodialysis Patients: A Diagnostic Test Study
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Emily H. Chang, MD, Matthew J. Tugman, BA, Magdalene M. Assimon, PharmD, PhD, Connie A. Gilet, MSN, APRN, NP, Renee Ge, BS, Quefeng Li, PhD, and Jennifer E. Flythe, MD, MPH
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Diseases of the genitourinary system. Urology ,RC870-923 - Published
- 2024
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5. Mapping lesion-specific response and progression dynamics and inter-organ variability in metastatic colorectal cancer
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Jiawei Zhou, Amber Cipriani, Yutong Liu, Gang Fang, Quefeng Li, and Yanguang Cao
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Science - Abstract
Understanding the heterogeneity of growth, response to therapy and progression dynamics in metastatic colorectal cancer (mCRC) remains critical. Here, the authors analyse lesion-specific response heterogeneity in 4,308 mCRC patients and find that organ-level progression sequence is associated with long-term survival.
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- 2023
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6. Integration of clinical parameters, genotype and epistaxis severity score to guide treatment for hereditary hemorrhagic telangiectasia associated bleeding
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Joan D. Beckman, Quefeng Li, Samuel T. Hester, Ofri Leitner, Karen L. Smith, and Raj S. Kasthuri
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Telangiectasia, hereditary hemorrhagic ,Anemia ,Epistaxis, Osler-Rendu-weber disease ,ACVRL1 protein, human ,Endoglin ,Iron ,Medicine - Abstract
Abstract Background Hereditary Hemorrhagic Telangiectasia (HHT) is a rare inherited disorder characterized by development of mucocutaneous telangiectases and visceral organ arteriovenous malformations, which can lead to recurrent, spontaneous bleeding and development of iron deficiency anemia. The primary objective of this study was to ascertain the relationship between epistaxis severity scores (ESS), laboratory values, genotype, and phenotype in HHT. Our secondary objective was to assess efficacy of systemic antifibrinolytic therapy in reducing ESS in HHT. Methodology We conducted a retrospective review of patients seen at the UNC HHT Center from January 1, 2009 to February 28, 2015. ESS, demographics, and results of genetic testing were abstracted from the medical record. Response to antifibrinolytic therapy was evaluated by comparing pre-post ESS. Results One hundred and forty nine patients were eligible with 116 having genetic testing and 33 without. Age, hemoglobin and ferritin levels were predictive of ESS. Of the 116 patients that underwent genetic testing: 63 had an ACVRL1 mutation, 40 had an ENG mutation, 2 had a SMAD4 mutation, and 11 patients had no pathologic HHT genetic variation detected. Compared to patients without a detectable HHT-associated genetic variation, patients with a HHT-associated genetic variation had higher ESS scores (p 4 were started on antifibrinolytic therapy (tranexamic acid or aminocaproic acid) and had a post-treatment ESS recorded. All patients had a decrease in ESS of > 0.71 (minimal meaningful difference), but patients taking antifibrinolytics displayed larger decreases. No patients on antifibrinolytics experienced a VTE with median follow up of 13 months. Conclusions We demonstrate that the ESS correlates with age, hemoglobin and ferritin. Additionally, we demonstrate that HHT patients with genetic mutations have higher ESS scores. Our data demonstrate that antifibrinolytics are effective in decreasing epistaxis severity and safe with long-term use in HHT patients.
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- 2020
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7. Arrhythmia Risk During the 2016 US Presidential Election: The Cost of Stressful Politics
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Lindsey Rosman, Elena Salmoirago‐Blotcher, Rafat Mahmood, Hannan Yang, Quefeng Li, Anthony J. Mazzella, Jeffrey Lawrence Klein, Joseph Bumgarner, and Anil Gehi
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arrhythmia ,implantable cardioverter‐defibrillator ,mental stress ,pacemaker ,triggers ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Anger and extreme stress can trigger potentially fatal cardiovascular events in susceptible people. Political elections, such as the 2016 US presidential election, are significant stressors. Whether they can trigger cardiac arrhythmias is unknown. Methods and Results In this retrospective case‐crossover study, we linked cardiac device data, electronic health records, and historic voter registration records from 2436 patients with implanted cardiac devices. The incidence of arrhythmias during the election was compared with a control period with Poisson regression. We also tested for effect modification by demographics, comorbidities, political affiliation, and whether an individual's political affiliation was concordant with county‐level election results. Overall, 2592 arrhythmic events occurred in 655 patients during the hazard period compared with 1533 events in 472 patients during the control period. There was a significant increase in the incidence of composite outcomes for any arrhythmia (incidence rate ratio [IRR], 1.77 [95% CI, 1.42–2.21]), supraventricular arrhythmia (IRR, 1.82 [95% CI, 1.36–2.43]), and ventricular arrhythmia (IRR, 1.60 [95% CI, 1.22–2.10]) during the election relative to the control period. There was also an increase in specific types of arrhythmia, including atrial fibrillation (IRR, 1.50 [95% CI, 1.06–2.11]), supraventricular tachycardia (IRR, 3.7 [95% CI, 2.2–6.2]), nonsustained ventricular tachycardia (IRR, 1.7 [95% CI, 1.3–2.2]), and daily atrial fibrillation burden (P
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- 2021
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8. Inferring Regulatory Networks From Mixed Observational Data Using Directed Acyclic Graphs
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Wujuan Zhong, Li Dong, Taylor B. Poston, Toni Darville, Cassandra N. Spracklen, Di Wu, Karen L. Mohlke, Yun Li, Quefeng Li, and Xiaojing Zheng
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regulatory network ,directed acyclic graphs ,mixed observational data ,continuous and categorical variables ,causal regulatory pathways ,Genetics ,QH426-470 - Abstract
Construction of regulatory networks using cross-sectional expression profiling of genes is desired, but challenging. The Directed Acyclic Graph (DAG) provides a general framework to infer causal effects from observational data. However, most existing DAG methods assume that all nodes follow the same type of distribution, which prohibit a joint modeling of continuous gene expression and categorical variables. We present a new mixed DAG (mDAG) algorithm to infer the regulatory pathway from mixed observational data containing both continuous variables (e.g. expression of genes) and categorical variables (e.g. categorical phenotypes or single nucleotide polymorphisms). Our method can identify upstream causal factors and downstream effectors closely linked to a variable and generate hypotheses for causal direction of regulatory pathways. We propose a new permutation method to test the conditional independence of variables of mixed types, which is the key for mDAG. We also utilize an L1 regularization in mDAG to ensure it can recover a large sparse DAG with limited sample size. We demonstrate through extensive simulations that mDAG outperforms two well-known methods in recovering the true underlying DAG. We apply mDAG to a cross-sectional immunological study of Chlamydia trachomatis infection and successfully infer the regularity network of cytokines. We also apply mDAG to a large cohort study, generating sensible mechanistic hypotheses underlying plasma adiponectin level. The R package mDAG is publicly available from CRAN at https://CRAN.R-project.org/package=mDAG.
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- 2020
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9. Correlates of changes in walking during the retirement transition: The Multi-Ethnic Study of Atherosclerosis
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Sydney A. Jones, Quefeng Li, Allison E. Aiello, Angela M. O'Rand, and Kelly R. Evenson
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Medicine - Abstract
Retirement from employment involves disruption in daily routines and has been associated with positive and negative changes in physical activity. Walking is the most common physical activity among older Americans. The factors that influence changes in walking after retirement are unknown. The study objective was to identify correlates of within-person change in recreational walking (for leisure) and transport walking (to get places) during the retirement transition among a multi-ethnic cohort of adults (N = 928) from six US communities. Correlates were measured at the individual (e.g., gender), interpersonal (e.g., social support), and community (e.g., density of walking destinations) levels at study exams between 2000 and 2012. Comparing pre- and post-retirement measures (average 4.5 years apart), 50% of participants increased recreational walking by 60 min or more per week, 31% decreased by 60 min or more per week, and 19% maintained their recreational walking. Forty-one percent of participants increased transport walking by 60 min or more per week, 40% decreased by 60 min or more per week, and 19% maintained their transport walking after retirement. Correlates differed for recreational and transport walking and for increases compared to decreases in walking. Self-rated health, chronic conditions, and perceptions of the neighborhood walking environment were associated with changes in both types of walking after retirement. Further, some correlates differed by gender and retirement age. Findings can inform the targeting of interventions to promote walking during the retirement transition. Keywords: Walking, Retirement, Built environment, Transportation, Leisure activities, Cohort study
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- 2018
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10. Ultrafiltration-profiled hemodialysis to reduce dialysis-related cardiovascular stress: Study protocol for a randomized controlled trial
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Matthew J. Tugman, Julia H. Narendra, Quefeng Li, Yueting Wang, Alan L. Hinderliter, Steven M. Brunelli, and Jennifer E. Flythe
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Medicine (General) ,R5-920 - Abstract
Rapid fluid removal (ultrafiltration, UF) is associated with higher cardiovascular morbidity and mortality among individuals receiving maintenance hemodialysis (HD). Fluid removal rates that exceed vascular refill rates can result in hemodynamic instability, end-organ damage to the heart, kidneys, gut and brain, among other organs, and patient symptoms. There are no known evidence-based HD treatment strategies to reduce harm from higher UF rates. Ultrafiltration profiling, the practice of varying UF rates to maximize fluid removal during periods of greatest hydration and plasma oncotic pressure, has been proposed as an HD treatment intervention that may reduce UF rate-related complications. This study is a randomized 4-phase cross-over trial in which participants are successively alternated between study arms with intervening washout periods, and treatment order is randomized. After 4-week screening and 6-week baseline periods, participants are randomized to HD with conventional UF or HD with UF profiling for a period of 3 weeks followed by a 1-week washout period before crossing over. Participants cross into conventional UF and UF profiling phases twice (2 phases per arm). The primary outcomes of interest are intradialytic hypotension (nadir intradialytic systolic blood pressure
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- 2019
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11. Wearable Devices, Health Care Use, and Psychological Well-Being in Patients With Atrial Fibrillation.
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Rosman, Lindsey, Lampert, Rachel, Songcheng Zhuo, Quefeng Li, Varma, Niraj, Burg, Matthew, Gaffey, Allison E., Armbruster, Tiffany, and Gehi, Anil
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- 2024
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12. Efficient computation of high-dimensional penalized generalized linear mixed models by latent factor modeling of the random effects.
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Heiling, Hillary M., Rashid, Naim U., Quefeng Li, Xianlu L. Peng, Yeh, Jen Jen, and Ibrahim, Joseph G.
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Modern biomedical datasets are increasingly high-dimensional and exhibit complex correlation structures. Generalized linear mixed models (GLMMs) have long been employed to accountforsuch dependencies.However, properspecification ofthe fixed and randomeffectsin GLMMs is increasingly difficult in high dimensions, and computational complexity grows with increasing dimension of the random effects. We present a novel reformulation of the GLMM using a factor model decomposition of the random effects, enabling scalable computation of GLMMsin high dimensions by reducing the latent space from a large number of random effects to a smaller set of latent factors. We also extend our prior work to estimate model parameters using a modified Monte Carlo Expectation Conditional Minimization algorithm, allowing us to perform variable selection on both the fixed and random effects simultaneously. We show through simulation that through this factor model decomposition, our method can fit high-dimensional penalized GLMMs faster than comparable methods and more easily scale to larger dimensions not previously seen in existing approaches. [ABSTRACT FROM AUTHOR]
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- 2024
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13. glmmPen: High Dimensional Penalized Generalized Linear Mixed Models.
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Heiling, Hillary M., Rashid, Naim U., Quefeng Li, and Ibrahim, Joseph G.
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CONDITIONAL expectations ,PANCREATIC cancer - Abstract
Generalized linear mixed models (GLMMs) are widely used in research for their ability to model correlated outcomes with non-Gaussian conditional distributions. The proper selection of fixed and random effects is a critical part of the modeling process since model misspecification may lead to significant bias. However, the joint selection of fixed and random effects has historically been limited to lower-dimensional GLMMs, largely due to the use of criterion-based model selection strategies. Here we present the R package glmmPen, one of the first to select fixed and random effects in higher dimension using a penalized GLMM modeling framework. Model parameters are estimated using a Monte Carlo Expectation Conditional Minimization (MCECM) algorithm, which leverages Stan and RcppArmadillo for increased computational efficiency. Our package supports the Binomial, Gaussian, and Poisson families and multiple penalty functions. In this manuscript we discuss the modeling procedure, estimation scheme, and software implementation through application to a pancreatic cancer subtyping study. Simulation results show our method has good performance in selecting both the fixed and random effects in high dimensional GLMMs. [ABSTRACT FROM AUTHOR]
- Published
- 2023
14. Supplement of "An Efficient Greedy Search Algorithm for High-dimensional Linear Discriminant Analysis".
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Hannan Yang, Danyu Lin, and Quefeng Li
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FISHER discriminant analysis ,SCHWARZ inequality ,MEAN value theorems ,CUMULATIVE distribution function - Abstract
The article focuses on providing proofs and supporting lemmas for "An Efficient Greedy Search Algorithm for High-dimensional Linear Discriminant Analysis." Topics include concentration inequalities for differences in covariance matrices and discriminant vectors; conditions ensuring the convergence of covariance matrix estimates; and results are crucial for validating the efficiency and accuracy of the proposed algorithm in high-dimensional linear discriminant analysis.
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- 2023
15. HIGH-DIMENSIONAL FACTOR REGRESSION FOR HETEROGENEOUS SUBPOPULATIONS.
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Peiyao Wang, Quefeng Li, Dinggang Shen, and Yufeng Liu
- Abstract
In modern scientific research, data heterogeneity is commonly observed due to the abundance of complex data. We propose a factor regression model for data with heterogeneous subpopulations. The proposed model can be represented as a decomposition of heterogeneous and homogeneous terms. The heterogeneous term is driven by latent factors in different subpopulations. The homogeneous term captures common variation in the covariates and shares common regression coefficients across subpopulations. Our proposed model attains a good balance between a global model and a group-specific model. The global model ignores data heterogeneity, while the group-specific model fits each subgroup separately. We prove the estimation and prediction consistency for our proposed estimators, and show that it has better convergence rates than the group-specific and the global models. We show that the extra cost of estimating latent factors is asymptotically negligible and the minimax rate is still attainable. We further demonstrate the robustness of our proposed method by studying its prediction error under a mis-specified group-specific model. Finally, we conduct simulation studies and analyze a dataset from Alzheimer's Disease Neuroimaging Initiative and an aggregated microarray dataset to further demonstrate the competitiveness and interpretability of our proposed factor regression model. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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16. Arrhythmia Risk During the 2016 US Presidential Election: The Cost of Stressful Politics
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Joseph M. Bumgarner, Lindsey Rosman, Anthony J. Mazzella, Jeffrey Lawrence Klein, Elena Salmoirago-Blotcher, Quefeng Li, Rafat Mahmood, Hannan Yang, and Anil K. Gehi
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Male ,medicine.medical_specialty ,Time Factors ,Presidential election ,Epidemiology ,Political Elections ,media_common.quotation_subject ,030204 cardiovascular system & hematology ,Anger ,implantable cardioverter‐defibrillator ,Arrhythmias ,arrhythmia ,triggers ,03 medical and health sciences ,Politics ,0302 clinical medicine ,Risk Factors ,health services administration ,Mental stress ,Secondary Prevention ,Diseases of the circulatory (Cardiovascular) system ,Medicine ,Humans ,Arrhythmia and Electrophysiology ,030212 general & internal medicine ,cardiovascular diseases ,Psychiatry ,media_common ,Original Research ,Aged ,Retrospective Studies ,Cross-Over Studies ,business.industry ,Incidence ,Arrhythmias, Cardiac ,pacemaker ,United States ,Extreme stress ,Mental Health ,RC666-701 ,mental stress ,cardiovascular system ,Costs and Cost Analysis ,Female ,Cardiology and Cardiovascular Medicine ,business ,Stress, Psychological ,Follow-Up Studies - Abstract
Background Anger and extreme stress can trigger potentially fatal cardiovascular events in susceptible people. Political elections, such as the 2016 US presidential election, are significant stressors. Whether they can trigger cardiac arrhythmias is unknown. Methods and Results In this retrospective case‐crossover study, we linked cardiac device data, electronic health records, and historic voter registration records from 2436 patients with implanted cardiac devices. The incidence of arrhythmias during the election was compared with a control period with Poisson regression. We also tested for effect modification by demographics, comorbidities, political affiliation, and whether an individual's political affiliation was concordant with county‐level election results. Overall, 2592 arrhythmic events occurred in 655 patients during the hazard period compared with 1533 events in 472 patients during the control period. There was a significant increase in the incidence of composite outcomes for any arrhythmia (incidence rate ratio [IRR], 1.77 [95% CI, 1.42–2.21]), supraventricular arrhythmia (IRR, 1.82 [95% CI, 1.36–2.43]), and ventricular arrhythmia (IRR, 1.60 [95% CI, 1.22–2.10]) during the election relative to the control period. There was also an increase in specific types of arrhythmia, including atrial fibrillation (IRR, 1.50 [95% CI, 1.06–2.11]), supraventricular tachycardia (IRR, 3.7 [95% CI, 2.2–6.2]), nonsustained ventricular tachycardia (IRR, 1.7 [95% CI, 1.3–2.2]), and daily atrial fibrillation burden ( P Conclusions There was a significant increase in cardiac arrhythmias during the 2016 US presidential election. These findings suggest that exposure to stressful sociopolitical events may trigger arrhythmogenesis in susceptible people.
- Published
- 2021
17. Effect of ultrafiltration profiling on outcomes among maintenance hemodialysis patients: a pilot randomized crossover trial
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Steven M. Brunelli, Alan L. Hinderliter, Quefeng Li, Magdalene M. Assimon, Yueting Wang, Matthew J. Tugman, Jennifer E. Flythe, and Julia H. Narendra
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Male ,medicine.medical_treatment ,030232 urology & nephrology ,Hemodynamics ,Ultrafiltration ,Blood volume ,Pilot Projects ,030204 cardiovascular system & hematology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Renal Dialysis ,medicine ,Intravascular volume status ,Humans ,Cross-Over Studies ,Troponin T ,business.industry ,Sodium ,Infant, Newborn ,medicine.disease ,Crossover study ,Blood pressure ,Nephrology ,Anesthesia ,Female ,Hemodialysis ,Hypotension ,Hypervolemia ,business - Abstract
BACKGROUND: More rapid fluid removal during hemodialysis is associated with adverse cardiovascular outcomes and longer dialysis recovery times. The effect of ultrafiltration (UF) profiling, independent of concomitant sodium profiling, on markers of intradialytic hemodynamics and other outcomes has been inadequately studied. METHODS: Four-phase, blinded crossover trial. Participants (UF rates >10 mL/h/kg) were assigned in random order to receive hemodialysis with UF profiling (constantly declining UF rate, intervention) vs. hemodialysis with conventional UF (control). Each 3-week 9-treatment period was followed by a 1-week 3-treatment washout period. Participants crossed into each study arm twice (2 phases/arm); 18 treatments per treatment type. The primary outcomes were intradialytic hypotension, pre- to post-dialysis troponin T change, and change from baseline in left ventricular global longitudinal strain. Other outcomes included intradialytic symptoms and blood volume measured-plasma refill (post-dialysis volume status measure), among others. Each participant served as their own control. RESULTS: On average, the 34 randomized patients (mean age 56 years, 24% female, mean dialysis vintage 6.3 years) had UF rates >10 mL/h/kg in 56% of treatments during the screening period. All but 2 patients completed the 15-week study (prolonged hospitalization, kidney transplant). There was no significant difference in intradialytic hypotension, troponin T change, or left ventricular strain between hemodialysis with UF profiling and conventional UF. With UF profiling, participants had significantly lower odds of light-headedness and plasma refill compared to hemodialysis with conventional UF. CONCLUSIONS: UF profiling did not reduce the odds of treatment-related cardiac stress but did reduce the odds of light-headedness and post-dialysis hypervolemia. TRIAL REGISTRATION: Clinicaltrials.gov identifier: NCT03301740 (registered October 4, 2017)
- Published
- 2020
18. Dynamic Classification of Plasmodium vivax Malaria Recurrence: An Application of Classifying Unknown Cause of Failure in Competing Risks.
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YUTONG LIU, FENG-CHANG LIN, LIN, JESSICA T., and QUEFENG LI
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PLASMODIUM vivax ,COMPETING risks ,MALARIA ,DISEASE relapse ,CLASSIFICATION ,TREATMENT effectiveness - Abstract
A standard competing risks set-up requires both time to event and cause of failure to be fully observable for all subjects. However, in application, the cause of failure may not always be observable, thus impeding the risk assessment. In some extreme cases, none of the causes of failure is observable. In the case of a recurrent episode of Plasmodium vivax malaria following treatment, the patient may have suffered a relapse from a previous infection or acquired a new infection from a mosquito bite. In this case, the time to relapse cannot be modeled when a competing risk, a new infection, is present. The efficacy of a treatment for preventing relapse from a previous infection may be underestimated when the true cause of infection cannot be classified. In this paper, we developed a novel method for classifying the latent cause of failure under a competing risks set-up, which uses not only time to event information but also transition likelihoods between covariates at the baseline and at the time of event occurrence. Our classifier shows superior performance under various scenarios in simulation experiments. The method was applied to Plasmodium vivax infection data to classify recurrent infections of malaria. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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19. Modeling Between-Study Heterogeneity for Improved Replicability in Gene Signature Selection and Clinical Prediction
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Quefeng Li, Naim U. Rashid, Joseph G. Ibrahim, and Jen Jen Yeh
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Statistics and Probability ,Microarray ,RNA-Seq ,Computational biology ,Biology ,Gene signature ,Generalized linear mixed model ,Article ,body regions ,Study heterogeneity ,Identification (biology) ,Statistics, Probability and Uncertainty ,Gene ,Selection (genetic algorithm) - Abstract
In the genomic era, the identification of gene signatures associated with disease is of significant interest. Such signatures are often used to predict clinical outcomes in new patients and aid clinical decision-making. However, recent studies have shown that gene signatures are often not replicable. This occurrence has practical implications regarding the generalizability and clinical applicability of such signatures. To improve replicability, we introduce a novel approach to select gene signatures from multiple datasets whose effects are consistently non-zero and account for between-study heterogeneity. We build our model upon some rank-based quantities, facilitating integration over different genomic datasets. A high dimensional penalized Generalized Linear Mixed Model (pGLMM) is used to select gene signatures and address data heterogeneity. We compare our method to some commonly used strategies that select gene signatures ignoring between-study heterogeneity. We provide asymptotic results justifying the performance of our method and demonstrate its advantage in the presence of heterogeneity through thorough simulation studies. Lastly, we motivate our method through a case study subtyping pancreatic cancer patients from four gene expression studies.
- Published
- 2019
20. The Influence of Organized Physical Activity (Including Gymnastics) on Young Adult Skeletal Traits: Is Maturity Phase Important?
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Bernardoni, Brittney, Scerpella, Tamara A., Rosenbaum, Paula F., Kanaley, Jill A., Raab, Lindsay N., Quefeng Li, Sijian Wang, and Dowthwaite, Jodi N.
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ANALYSIS of bones ,ANALYSIS of variance ,ANTHROPOMETRY ,CHI-squared test ,STATISTICAL correlation ,GYMNASTICS ,MENARCHE ,SCIENTIFIC observation ,RESEARCH funding ,STATISTICAL hypothesis testing ,PILOT projects ,REPEATED measures design ,PHYSICAL activity ,DATA analysis software ,DESCRIPTIVE statistics ,PHOTON absorptiometry ,MANN Whitney U Test - Abstract
We prospectively evaluated adolescent organized physical activity (PA) as a factor in adult female bone traits. Annual DXA scans accompanied semiannual records of anthropometry, maturity, and PA for 42 participants in this preliminary analysis (criteria: appropriately timed DXA scans at ~1 year premenarche [predictor] and ~5 years postmenarche [dependent variable]). Regression analysis evaluated total adolescent interscan PA and PA over 3 maturity subphases as predictors of young adult bone outcomes: 1) bone mineral content (BMC), geometry, and strength indices at nondominant distal radius and femoral neck; 2) subhead BMC; 3) lumbar spine BMC. Analyses accounted for baseline gynecological age (years pre- or postmenarche), baseline bone status, adult body size and interscan body size change. Gymnastics training was evaluated as a potentially independent predictor, but did not improve models for any outcomes (p > .07). Premenarcheal bone traits were strong predictors of most adult outcomes (semipartial r
2 = .21-0.59, p ≤ .001). Adult 1/3 radius and subhead BMC were predicted by both total PA and PA 1-3 years postmenarche (p < .03). PA 3-5 years postmenarche predicted femoral narrow neck width, endosteal diameter, and buckling ratio (p < .05). Thus, participation in organized physical activity programs throughout middle and high school may reduce lifetime fracture risk in females. [ABSTRACT FROM AUTHOR]- Published
- 2015
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21. Arrhythmia Risk During the 2016 US Presidential Election: The Cost of Stressful Politics.
- Author
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Rosman, Lindsey, Salmoirago-Blotcher, Elena, Mahmood, Rafat, Hannan Yang, Quefeng Li, Mazzella, Anthony J., Klein, Jeffrey Lawrence, Bumgarner, Joseph, Gehi, Anil, Yang, Hannan, Li, Quefeng, and Lawrence Klein, Jeffrey
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- 2021
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22. Robust estimation of high-dimensional covariance and precision matrices
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Jianqing Fan, Heather Battey, Quefeng Li, Marco Avella-Medina, and Engineering & Physical Science Research Council (EPSRC)
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Statistics and Probability ,General Mathematics ,Statistics & Probability ,02 engineering and technology ,High dimensional ,01 natural sciences ,010104 statistics & probability ,Matrix (mathematics) ,Robustness (computer science) ,0202 electrical engineering, electronic engineering, information engineering ,1403 Econometrics ,Applied mathematics ,0101 mathematics ,Mathematics ,Applied Mathematics ,0103 Numerical and Computational Mathematics ,0104 Statistics ,Estimator ,020206 networking & telecommunications ,Articles ,Covariance ,Minimax ,Agricultural and Biological Sciences (miscellaneous) ,Thresholding ,Bounded function ,Statistics, Probability and Uncertainty ,General Agricultural and Biological Sciences - Abstract
High-dimensional data are often most plausibly generated from distributions with complex structure and leptokurtosis in some or all components. Covariance and precision matrices provide a useful summary of such structure, yet the performance of popular matrix estimators typically hinges upon a sub-Gaussianity assumption. This paper presents robust matrix estimators whose performance is guaranteed for a much richer class of distributions. The proposed estimators, under a bounded fourth moment assumption, achieve the same minimax convergence rates as do existing methods under a sub-Gaussianity assumption. Consistency of the proposed estimators is also established under the weak assumption of bounded [Formula: see text] moments for [Formula: see text]. The associated convergence rates depend on [Formula: see text].
- Published
- 2018
23. The effect of a practice-based multi-component intervention that includes health coaching on medication adherence and blood pressure control in rural primary care
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Jia Rong Wu, Quefeng Li, Darren A. DeWalt, Jimmy Tillman, Alan L. Hinderliter, Doyle M. Cummings, and Hayden B. Bosworth
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Blood pressure control ,Adult ,Male ,medicine.medical_specialty ,Health coaching ,Endocrinology, Diabetes and Metabolism ,Diastole ,Medication adherence ,Primary care ,Rural Health ,030204 cardiovascular system & hematology ,Article ,Medication Adherence ,03 medical and health sciences ,0302 clinical medicine ,Patient Education as Topic ,Intervention (counseling) ,Internal medicine ,Internal Medicine ,Medicine ,Humans ,030212 general & internal medicine ,Prospective Studies ,Antihypertensive Agents ,Aged ,Primary Health Care ,business.industry ,Secondary data ,Blood Pressure Determination ,Middle Aged ,Blood pressure ,Hypertension ,Female ,Cardiology and Cardiovascular Medicine ,business - Abstract
Low adherence to anti-hypertensive medications contributes to worse outcomes. The authors conducted a secondary data analysis to examine the effects of a health-coaching intervention on medication adherence and blood pressure (BP), and to explore whether changes in medication adherence over time were associated with changes in BP longitudinally in 477 patients with hypertension. Data regarding medication adherence and BP were collected at baseline, 6, 12, 18, and 24 months. The intervention resulted in increases in medication adherence (5.75→5.94, P = .04) and decreases in diastolic BP (81.6→76.1 mm Hg, P < .001) over time. The changes in medication adherence were associated with reductions in diastolic BP longitudinally (P = .047). Patients with low medication adherence at baseline had significantly greater improvement in medication adherence and BP over time than those with high medication adherence. The intervention demonstrated improvements in medication adherence and diastolic BP and offers promise as a clinically applicable intervention in rural primary care.
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- 2018
24. Embracing the Blessing of Dimensionality in Factor Models
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Jianqing Fan, Quefeng Li, Guang Cheng, and Yuyan Wang
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Statistics and Probability ,Divide and conquer algorithms ,FOS: Computer and information sciences ,Mathematics - Statistics Theory ,Statistics Theory (math.ST) ,01 natural sciences ,Article ,Set (abstract data type) ,Methodology (stat.ME) ,010104 statistics & probability ,symbols.namesake ,0502 economics and business ,Econometrics ,FOS: Mathematics ,0101 mathematics ,Fisher information ,Statistics - Methodology ,050205 econometrics ,Mathematics ,Factor analysis ,Covariance matrix ,05 social sciences ,Rate of convergence ,symbols ,Statistics, Probability and Uncertainty ,Random variable ,Curse of dimensionality - Abstract
Factor modeling is an essential tool for exploring intrinsic dependence structures among high-dimensional random variables. Much progress has been made for estimating the covariance matrix from a high-dimensional factor model. However, the blessing of dimensionality has not yet been fully embraced in the literature: much of the available data are often ignored in constructing covariance matrix estimates. If our goal is to accurately estimate a covariance matrix of a set of targeted variables, shall we employ additional data, which are beyond the variables of interest, in the estimation? In this article, we provide sufficient conditions for an affirmative answer, and further quantify its gain in terms of Fisher information and convergence rate. In fact, even an oracle-like result (as if all the factors were known) can be achieved when a sufficiently large number of variables is used. The idea of using data as much as possible brings computational challenges. A divide-and-conquer algorithm is thus proposed to alleviate the computational burden, and also shown not to sacrifice any statistical accuracy in comparison with a pooled analysis. Simulation studies further confirm our advocacy for the use of full data, and demonstrate the effectiveness of the above algorithm. Our proposal is applied to a microarray data example that shows empirical benefits of using more data. Supplementary materials for this article are available online.
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- 2017
25. The association of health literacy and blood pressure reduction in a cohort of patients with hypertension: The heart healthy lenoir trial
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Beverly A. Garcia, Alan L. Hinderliter, Katrina E Donahue, Margorie Rachide, Alice S. Ammerman, Cassandra Miller, Jacqueline R. Halladay, Jim Tillman, Crystal W. Cené, Darren A. DeWalt, Edwin Little, Quefeng Li, and Doyle M. Cummings
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Adult ,medicine.medical_specialty ,Health Knowledge, Attitudes, Practice ,Psychological intervention ,MEDLINE ,Health literacy ,Blood Pressure ,Rural Health ,030204 cardiovascular system & hematology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Health care ,Outcome Assessment, Health Care ,Medicine ,Humans ,030212 general & internal medicine ,Prospective Studies ,Prospective cohort study ,Aged ,Primary Health Care ,business.industry ,Rural health ,General Medicine ,Middle Aged ,Quality Improvement ,Health Literacy ,Blood pressure ,Cohort ,Hypertension ,Physical therapy ,Female ,business - Abstract
Objective Lower health literacy is associated with poorer health outcomes. Few interventions poised to mitigate the impact of health literacy in hypertensive patients have been published. We tested if a multi-level quality improvement intervention could differentially improve Systolic Blood Pressure (SBP) more so in patients with low vs. higher health literacy. Methods We conducted a non-randomized prospective cohort trial of 525 patients referred with uncontrolled hypertension. Stakeholder informed and health literacy sensitive strategies were implemented at the practice and patient level. Outcomes were assessed at 0, 6, 12, 18 and 24 months. Results At 12 months, the low and higher health literacy groups had statistically significant decreases in mean SBP (6.6 and 5.3 mmHg, respectively), but the between group difference was not significant (Δ 1.3 mmHg, P = 0.067). At 24 months, the low and higher health literacy groups reductions were 8.1 and 4.6 mmHg, respectively, again the between group difference was not significant (Δ 3.5 mmHg, p = 0.25). Conclusions/practice implications A health literacy sensitive multi-level intervention may equally lower SBP in patients with low and higher health literacy. Practical health literacy appropriate tools and methods can be implemented in primary care settings using a quality improvement approach.
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- 2017
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26. TIME-VARYING HAZARDS MODEL FOR INCORPORATING IRREGULARLY MEASURED HIGH-DIMENSIONAL BIOMARKERS.
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Xiang Li, Quefeng Li, Donglin Zeng, Marder, Karen, Paulsen, Jane, and Yuanjia Wang
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MAGNETIC resonance imaging ,PROGNOSTIC models ,BIOMARKERS ,HAZARDS ,STOCHASTIC approximation - Abstract
Clinical studies with time-to-event outcomes often collect measurements of a large number of time-varying covariates over time (e.g., clinical assessments or neuroimaging biomarkers) in order to build a time-sensitive prognostic model. However, resource-intensive or invasive (e.g., lumbar puncture) data-collection processes mean that biomarkers may be measured infrequently and, thus, not be available at every observed event time point. Therefore, leveraging all available time-varying biomarkers is important to improving our models event occurrence. We propose a kernel smoothing-based approach that borrows information across subjects to remedy the problem of infrequent and unbalanced biomarker measurements under a time-varying hazards model. A penalized pseudo-likelihood function is proposed for estimation, and an efficient augmented penalization minimization algorithm related to the alternating direction method of multipliers is adopted for computation. Given several regularity conditions, used to control the approximation bias and stochastic variability, we show that even in the presence of ultrahigh dimensionality, the proposed method selects important biomarkers with high probability. We use simulation studies to show that our method outperforms existing methods in terms of estimation and selection performance. Finally, we apply the proposed method to real data to model time-to-disease conversion using longitudinal, whole-brain structural magnetic resonance imaging biomarkers. The results show substantial improvement in performance over that of current standards, including using baseline measures only. [ABSTRACT FROM AUTHOR]
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- 2020
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27. GENERALIZED REGRESSION ESTIMATORS WITH HIGH-DIMENSIONAL COVARIATES.
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Tram Ta, Jun Shao, Quefeng Li, and Lei Wang
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ASYMPTOTIC efficiencies ,DEMOGRAPHIC surveys ,REGRESSION analysis ,SAMPLE size (Statistics) - Abstract
Data from a large number of covariates with known population totals are frequently observed in survey studies. These auxiliary variables contain valuable information that can be incorporated into an estimation of the population total of a survey variable in order to improve the estimation precision. We consider a generalized regression estimator formulated under a model-assisted framework, in which a regression model is used for the available covariates, and the estimator retains the basic design-based properties. The generalized regression estimator is shown to improve the efficiency of the design-based Horvitz-Thompson estimator when the number of covariates is fixed. We investigate the performance of the generalized regression estimator when the number of covariates p is allowed to diverge as the sample size n increases. We examine two approaches. First, the model parameter is estimated using the weighted least squares method when p < n. Second, the Lasso method is employed when the model parameter is sparse. We show that under an assisted model and certain conditions on the joint distribution of the covariates, as well as the divergence rates of n and p, the generalized regression estimator is asymptotically more efficient than the Horvitz-Thompson estimator, and is robust against a model misspecification. We also study the consistency of the variance estimation for the generalized regression estimator. Our theoretical results are corroborated by simulation studies and an example. [ABSTRACT FROM AUTHOR]
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- 2020
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28. Site-Specific, Adult Bone Benefits Attributed to Loading During Youth: A Preliminary Longitudinal Analysis
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Brittney Bernardoni, Sijian Wang, Jodi N. Dowthwaite, Quefeng Li, Tamara A. Scerpella, and Paul J. Rathouz
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0301 basic medicine ,Adult ,Histology ,Time Factors ,Adolescent ,Gymnastics ,Physiology ,Endocrinology, Diabetes and Metabolism ,Osteoporosis ,030209 endocrinology & metabolism ,Metaphysis ,Article ,Bone and Bones ,Longitudinal observation ,Weight-Bearing ,03 medical and health sciences ,0302 clinical medicine ,Absorptiometry, Photon ,medicine ,Humans ,Longitudinal Studies ,Femoral neck ,Orthodontics ,business.industry ,Anatomy ,Anthropometry ,Bone area ,medicine.disease ,Diaphysis ,medicine.anatomical_structure ,Organ Specificity ,Linear Models ,Cortical bone ,Female ,030101 anatomy & morphology ,business ,human activities - Abstract
We examined site-specific bone development in relation to childhood and adolescent artistic gymnastics exposure, comparing up to 10years of prospectively acquired longitudinal data in 44 subjects, including 31 non-gymnasts (NON) and 13 gymnasts (GYM) who participated in gymnastics from pre-menarche to ≥1.9years post-menarche. Subjects underwent annual regional and whole-body DXA scans; indices of bone geometry and strength were calculated. Anthropometrics, physical activity, and maturity were assessed annually, coincident with DXA scans. Non-linear mixed effect models centered growth in bone outcomes at menarche and adjusted for menarcheal age, height, and non-bone fat-free mass to evaluate GYM-NON differences. A POST-QUIT variable assessed the withdrawal effect of quitting gymnastics. Curves for bone area, mass (BMC), and strength indices were higher in GYM than NON at both distal radius metaphysis and diaphysis (p
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- 2016
29. GENDER PREFERENCES OF PATIENTS WHEN SELECTING ORTHOPAEDIC PROVIDERS.
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Dineen, Hannah A., Patterson, J. Megan M., Eskildsen, Scott M., Gan, Zoe S., Quefeng Li, Patterson, Brendan C., and Draeger, Reid W.
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- 2019
30. A School-Based Resistance Intervention Improves Skeletal Growth in Adolescent Females
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Jill M. Thein-Nissenbaum, Quefeng Li, Molly Day, Sijian Wang, Joshua Fast, Tamara A. Scerpella, and Brittney Bernardoni
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medicine.medical_specialty ,Bone density ,Endocrinology, Diabetes and Metabolism ,Narrow neck ,Motor Activity ,Article ,Absorptiometry, Photon ,Wisconsin ,Bone Density ,Internal medicine ,Medicine ,Humans ,Child ,Skeletal growth ,School Health Services ,Bone growth ,Menarche ,Bone Development ,Lumbar Vertebrae ,Physical Education and Training ,Anthropometry ,business.industry ,Femur Neck ,Resistance Training ,Rheumatology ,Physical therapy ,School based ,Female ,Curriculum ,business - Abstract
Twenty-two sixth-grade girls who participated in a 7-month school-based resistance-training program were compared to 22 controls. In a subanalysis of Tanner breast II (T2) and III (T3) subjects (n = 21 controls subjects (CON), n = 17 subjects in the high-intervention (INT)-dose group (HI)), T2 HI had greater narrow neck (NN) width gains than T2 CON (p 0.05) and T3 HI had greater L3 bone mineral density (BMD) gains than T3 CON (p 0.05).Physical activity modulates bone growth during adolescence, but an effective activity has not been identified for general use. The purpose of this study was to examine the effect of a school-based resistance-training program on skeletal growth in pre-menarcheal females.Sixth-grade girls participated in a 7-month, resistance-training program (INT) embedded in physical education (PE) classes. Age- and maturity-matched CON from a neighboring school participated in the standard PE classes. INT dose defined high (HI) and low (LO) groups. At baseline (BL) and follow-up (FU), non-INT organized physical activity (PA, hours per week) and maturity status were recorded; DXA scans assessed total body, distal radius, proximal femur, and lumbar spine. Regression models analyzed growth in bone outcomes for HI versus CON, accounting for age, Tanner stage, height, and PA.Forty-four girls (22 HI, 22 CON) were 11.7 ± 0.3 years of age at BL; all were ≤6 months postmenarche and did not differ in bone growth over the course of the intervention (p 0.05). However, in a subanalysis limited to subjects who were T2 or T3 at BL (n = 21 CON, n = 17 HI), T2 HI had greater gains in NN width (p = 0.01) compared to T2 CON, while T3 HI had greater gains in L3 BMD (p = 0.03) compared to T3 CON.In a group of T2 and T3 sixth-grade girls, a school-based resistance-training intervention produced maturity-specific differential gains for HI versus CON at the hip and spine.
- Published
- 2013
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